Recent uploads

  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/ReblockGVCF
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 30, 2026

    Part of Dockstore

    208 more versions exist for this record

    4377
    915
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/PrepareGenotypes
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 30, 2026

    Part of Dockstore

    161 more versions exist for this record

    2152
    499
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/PeakCalling
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 30, 2026

    Part of Dockstore

    209 more versions exist for this record

    4799
    1972
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/pca_only_no_labels
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 30, 2026

    Part of Dockstore

    226 more versions exist for this record

    4896
    1105
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/PairedTag
    broadinstitute

    WDL Analysis Research Pipelines The WDL Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like...

    Uploaded on October 30, 2026

    Part of Dockstore

    211 more versions exist for this record

    4110
    990
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/Optimus
    broadinstitute

    The optimus 3' pipeline processes 10x genomics sequencing data based on the v2 chemistry. It corrects cell barcodes and UMIs, aligns reads, marks duplicates, and returns data as alignments in BAM format and as counts in sparse matrix exchange format.

    Uploaded on October 30, 2026

    Part of Dockstore

    209 more versions exist for this record

    4573
    1323
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/Multiome
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on October 30, 2026

    Part of Dockstore

    212 more versions exist for this record

    4748
    1610
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/MitoPostProcessing
    broadinstitute

    Runs mito post-processing: exports filtered VCF and sample metadata TSV.

    Uploaded on October 30, 2026

    Part of Dockstore

    161 more versions exist for this record

    2494
    399
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/MitochondriaSingleSample
    broadinstitute

    Takes in an hg38 bam or cram and outputs VCF of SNP/Indel calls on the mitochondria.

    Uploaded on October 30, 2026

    Part of Dockstore

    146 more versions exist for this record

    2198
    287
  • October 30, 2026 (ImputationBeagle_v4.2.1)
    Software
    Open
    github.com/broadinstitute/warp/MitochondriaMerge
    broadinstitute

    This workflow builds a combined mtDNA MatrixTable from per-sample VCFs, imputes hom-ref coverage from a coverage DB, and outputs annotated (full and filtered) callsets.

    Uploaded on October 30, 2026

    Part of Dockstore

    146 more versions exist for this record

    2317
    477
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