Hoffman Lab
Published July 23, 2026 | Version v1
Dataset Open

Newmap: FM-index of GRCh38.p14

Authors/Creators

  • 1. ROR icon University Health Network
  • 2. ROR icon University of Toronto
  • 3. ROR icon Vector Institute

Description

FM-index of GRCh38.p14

Assembly: GRCh38.p14
Newmap version: 0.2

Files

GRCh38_no_alt_analysis_set_GCA_000001405.15.awfmi: An FM-index of the no alternative loci scaffolds analysis set for GRCh38.p14. The index has a compression ratio of 8 and a seed length of 12.

Methods

Newmap uses the AvxWindowFmIndex library to generate an FM-index with the reference sequence as input.

Files

Files (3.8 GB)

Name Size
md5:27d0fba48dcb8f0b76b1da91a46ea73d
3.8 GB Download

Additional details

Funding

Natural Sciences and Engineering Research Council
Computational methods for chromatin data RGPIN-2022-05134

Software

Repository URL
https://github.com/hoffmangroup/newmap
Programming language
Python , C
Development Status
Active