sample_name,donor,treatment,cell_type,bam
001V_DMSO_AT2,001V,DMSO,AT2,XCAST_20250729_A00904_IL21540-001_N4UD-H12_L002.markdup.sorted.bam
001V_Smg1i_AT2,001V,Smg1i,AT2,XCAST_20250729_A00904_IL21539-001_N4UD-G12_L002.markdup.sorted.bam
027U_DMSO_AT2,027U,DMSO,AT2,XCAST_20250729_A00904_IL21538-001_N4UD-F12_L002.markdup.sorted.bam
027U_Smg1i_AT2,027U,Smg1i,AT2,XCAST_20250729_A00904_IL21537-002_N4UD-E12_L002.markdup.sorted.bam
029T_DMSO_AT2,029T,DMSO,AT2,XCAST_20250729_A00904_IL21542-001_N4UD-B09_L002.markdup.sorted.bam
029T_Smg1i_AT2,029T,Smg1i,AT2,XCAST_20250729_A00904_IL21541-002_N4UD-A09_L002.markdup.sorted.bam
001V_DMSO_FB,001V,DMSO,FB,PS_STC1505_8_FB001VDMSO_S8_L001.markdup.sorted.bam
001V_Smg1i_FB,001V,Smg1i,FB,PS_STC1505_7_FB001VSmg1i_S7_L001.markdup.sorted.bam
027U_DMSO_FB,027U,DMSO,FB,PS_STC1505_4_FB027UDMSO_S4_L001.markdup.sorted.bam
027U_Smg1i_FB,027U,Smg1i,FB,PS_STC1505_3_FB027USmg1i_S3_L001.markdup.sorted.bam
029T_DMSO_FB,029T,DMSO,FB,PS_STC1505_12_FB029TDMSOClean_S12_L001.markdup.sorted.bam
029T_Smg1i_FB,029T,Smg1i,FB,PS_STC1505_11_FB029TSmg1iClean_S11_L001.markdup.sorted.bam
010R_DMSO_LAE,010R,DMSO,LAE,XCAST_20250729_A00904_IL21530-001_N4UD-F11_L002.markdup.sorted.bam
010R_Smg1i_LAE,010R,Smg1i,LAE,XCAST_20250729_A00904_IL21529-003_N4UD-E11_L002.markdup.sorted.bam
017Q_DMSO_LAE,017Q,DMSO,LAE,XCAST_20250729_A00904_IL21534-002_N4UD-B12_L002.markdup.sorted.bam
017Q_Smg1i_LAE,017Q,Smg1i,LAE,XCAST_20250729_A00904_IL21533-002_N4UD-A12_L002.markdup.sorted.bam
047N_DMSO_LAE,047N,DMSO,LAE,XCAST_20250729_A00904_IL21536-001_N4UD-D12_L002.markdup.sorted.bam
047N_Smg1i_LAE,047N,Smg1i,LAE,XCAST_20250729_A00904_IL21535-001_N4UD-C12_L002.markdup.sorted.bam
066Q_DMSO_LAE,066Q,DMSO,LAE,XCAST_20250729_A00904_IL21532-001_N4UD-H11_L002.markdup.sorted.bam
066Q_Smg1i_LAE,066Q,Smg1i,LAE,XCAST_20250729_A00904_IL21531-001_N4UD-G11_L002.markdup.sorted.bam
001V_DMSO_MV,001V,DMSO,MV,PS_STC1505_6_MV001VDMSO_S6_L001.markdup.sorted.bam
001V_Smg1i_MV,001V,Smg1i,MV,PS_STC1505_5_MV001VSmg1i_S5_L001.markdup.sorted.bam
027U_DMSO_MV,027U,DMSO,MV,PS_STC1505_2_MV027UDMSO_S2_L001.markdup.sorted.bam
027U_Smg1i_MV,027U,Smg1i,MV,PS_STC1505_1_MV027USmg1i_S1_L001.markdup.sorted.bam
029T_DMSO_MV,029T,DMSO,MV,PS_STC1505_10_MV029TDMSO_S10_L001.markdup.sorted.bam
029T_Smg1i_MV,029T,Smg1i,MV,PS_STC1505_9_MV029TSmg1i_S9_L001.markdup.sorted.bam