Published October 5, 2026
| Version Glimpse2LowPassImputation_v2.0.1
Software
Open
github.com/broadinstitute/warp/scANVI
Authors/Creators
Description
Pipeline for cell type label transfer using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and (optionally) ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models. When no ATAC h5ad is provided, the pipeline auto-detects GEX-only mode and trains/annotates from the reference atlas using GEX and reference alone.
Files
github.com-broadinstitute-warp-scANVI_Glimpse2LowPassImputation_v2.0.1.zip
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.23175475 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/warp/scANVI:Glimpse2LowPassImputation_v2.0.1 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FscANVI/versions/Glimpse2LowPassImputation_v2.0.1/PLAIN-WDL/descriptor/scANVI.wdl (URL)