uid domain_id unp_acc unp_name locus_tag gene_name protein_name gene_order range is_manual a_id x_id h_id t_id f_id a_name x_name h_name t_name rep_ecod_uid rep_ecod_domain_id comment 002986947 Q87KL8_nD1 Q87KL8 Q87KL8_VIBPA VP2959 UPF0056 inner membrane protein 2958 1-194 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001139949 e4ldsA2 002986948 Q87TM7_nD1 Q87TM7 Q87TM7_VIBPA VP0042 42 51-135 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000003337 e1cc5A1 002986949 Q87M48_nD4 Q87M48 Q87M48_VIBPA VP2410 2410 281-310 f a.7 5037 5037.1 5037.1.1 alpha bundles Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like 001101573 e1jb0B2 002986950 Q87M48_nD3 Q87M48 Q87M48_VIBPA VP2410 2410 86-95,126-280 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 002387840 e6bs9A1 002986951 Q87M48_nD1 Q87M48 Q87M48_VIBPA VP2410 2410 16-40 f a.7 5037 5037.1 5037.1.1 alpha bundles Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like 001101573 e1jb0B2 002986952 Q87M48_nD2 Q87M48 Q87M48_VIBPA VP2410 2410 101-125 f a.7 5037 5037.1 5037.1.1 alpha bundles Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like 001101573 e1jb0B2 002986953 Q87SU6_nD1 Q87SU6 Q87SU6_VIBPA VP0326 Malate dehydrogenase 326 1-60 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000026259 e1iz6B2 002986954 Q87SV3_nD1 Q87SV3 Q87SV3_VIBPA VP0319 Universal stress protein 319 1-145 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009854 e1mjhA1 002986955 Q87L13_nD1 Q87L13 SYW_VIBPA VP2804 trpS Tryptophan--tRNA ligase 2803 1-338 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002429583 e6ncrB1 002986956 Q87HJ6_nD3 Q87HJ6 Q87HJ6_VIBPA VPA0967 mannose-6-phosphate isomerase 4046 326-410 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001138169 e2wfpA3 002986957 Q87HJ6_nD1 Q87HJ6 Q87HJ6_VIBPA VPA0967 mannose-6-phosphate isomerase 4046 6-160,256-325 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001138167 e2wfpA1 002986958 Q87HJ6_nD2 Q87HJ6 Q87HJ6_VIBPA VPA0967 mannose-6-phosphate isomerase 4046 161-255 f a.6 3691 3691.1 3691.1.1 alpha arrays Phosphomannose isomerase helical insertion domain Phosphomannose isomerase helical insertion domain Phosphomannose isomerase helical insertion domain 001138168 e2wfpA2 002986959 Q87HC4_nD3 Q87HC4 Q87HC4_VIBPA VPA1041 Type VI secretion system baseplate subunit TssK 4120 311-440 f a.3 10 10.47 10.47.1 beta sandwiches jelly-roll TssK C-terminal domain TssK C-terminal domain 002390432 e5y0eA2 002986960 Q87HC4_nD1 Q87HC4 Q87HC4_VIBPA VPA1041 Type VI secretion system baseplate subunit TssK 4120 6-185 f a.3 4166 4166.1 4166.1.1 beta sandwiches Lactophage receptor-binding protein N-terminal domain-like Lactophage receptor-binding protein N-terminal domain-like Lactophage receptor-binding protein N-terminal domain-like 002390431 e5y0eA1 002986961 Q87HC4_nD2 Q87HC4 Q87HC4_VIBPA VPA1041 Type VI secretion system baseplate subunit TssK 4120 186-310 f a.6 602 602.3 602.3.1 alpha arrays L-aspartase middle domain-like TssK neck domain TssK neck domain 002089738 e5mwnB2 002986962 Q87G25_nD4 Q87G25 Q87G25_VIBPA VPA1492 4571 266-540 f 002986963 Q87G25_nD3 Q87G25 Q87G25_VIBPA VPA1492 4571 1-10,211-265 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002986964 Q87G25_nD1 Q87G25 Q87G25_VIBPA VPA1492 4571 11-50,176-210 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002986965 Q87G25_nD2 Q87G25 Q87G25_VIBPA VPA1492 4571 51-175 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002429573 e6itsA1 002986966 Q87NC3_nD1 Q87NC3 Q87NC3_VIBPA VP1945 1945 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001918783 e5hevB2 002986967 Q87NC3_nD2 Q87NC3 Q87NC3_VIBPA VP1945 1945 136-210 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001148285 e4gvpA5 002986968 Q87RT5_nD2 Q87RT5 Q87RT5_VIBPA VP0692 692 86-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002986969 Q87RT5_nD1 Q87RT5 Q87RT5_VIBPA VP0692 692 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002986970 Q87I74_nD1 Q87I74 Q87I74_VIBPA VPA0732 Chromosome segregation ATPase 3811 31-165 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 000004683 e2f6mB1 002986971 Q87T11_nD1 Q87T11 RL23_VIBPA VP0259 rplW 50S ribosomal protein L23 259 1-95 f a.11 304 304.109 304.109.1 a+b two layers Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e 001860059 e5j8aDU1 002986972 Q87FR2_nD3 Q87FR2 Q87FR2_VIBPA VPA1616 4695 656-685 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008805 e1mxgA2 002986973 Q87FR2_nD2 Q87FR2 Q87FR2_VIBPA VPA1616 4695 191-655 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001806778 e5a2aA2 002986974 Q87FR2_nD1 Q87FR2 Q87FR2_VIBPA VPA1616 4695 21-115,136-185 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000032655 e1h3gB1 002986975 Q87JM3_nD1 Q87JM3 Q87JM3_VIBPA VPA0225 3304 31-460 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 000142239 e3pikA1 002986976 Q87LR9_nD2 Q87LR9 Q87LR9_VIBPA VP2542 2542 116-285 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000144716 e3tqhA2 002986977 Q87LR9_nD1 Q87LR9 Q87LR9_VIBPA VP2542 2542 1-115,286-315 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 000144715 e3tqhA1 002986978 Q87PP7_nD1 Q87PP7 Q87PP7_VIBPA VP1454 OMP_b-brl domain-containing protein 1454 21-159 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002986979 Q87P87_nD1 Q87P87 Q87P87_VIBPA VP1631 1631 36-450 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 001841138 e5azsC1 002986980 Q87K03_nD1 Q87K03 QNR_VIBPA VPA0095 Pentapeptide repeat protein VPA0095 3174 1-215 f a.4 207 207.9 207.9.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Pentapeptide repeats Pentapeptide repeats 000454317 e2xtyA1 002986981 Q87KR8_nD3 Q87KR8 Q87KR8_VIBPA VP2908 Tyr recombinase domain-containing protein 2907 306-510,532-550 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001834379 e1z4hA1 002986982 Q87KR8_nD4 Q87KR8 Q87KR8_VIBPA VP2908 Tyr recombinase domain-containing protein 2907 291-305,551-585 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 000184859 e2p22A1 002986983 Q87KR8_nD2 Q87KR8 Q87KR8_VIBPA VP2908 Tyr recombinase domain-containing protein 2907 171-290,601-685 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 001267972 e3nkhB3 002986984 Q87KR8_nD5 Q87KR8 Q87KR8_VIBPA VP2908 Tyr recombinase domain-containing protein 2907 701-850 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 000004674 e1lrzA1 002986985 Q87KR8_nD1 Q87KR8 Q87KR8_VIBPA VP2908 Tyr recombinase domain-containing protein 2907 21-170 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 000140402 e3nrwA1 002986986 Q87T01_nD1 Q87T01 RL5_VIBPA VP0269 rplE 50S ribosomal protein L5 269 1-179 f a.11 882 882.1 882.1.1 a+b two layers Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5 002093033 e5o60F1 002986987 Q87MB9_nD1 Q87MB9 Q87MB9_VIBPA VP2337 2337 11-450 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000004915 e2a65A1 002986988 Q87R50_nD1 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 46-130 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001594 e1f00I2 002986989 Q87R50_nD3 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 221-310 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001397 e1f1sA1 002986990 Q87R50_nD4 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 311-395 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001397 e1f1sA1 002986991 Q87R50_nD6 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 476-565 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001669608 e1xeuA1 002986992 Q87R50_nD10 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 836-1023 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002792151 e7b0wC1 002986993 Q87R50_nD2 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 131-215 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001397 e1f1sA1 002986994 Q87R50_nD5 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 396-475 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001669608 e1xeuA1 002986995 Q87R50_nD8 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 661-740 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000223972 e4ak1A2 002986996 Q87R50_nD7 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 571-655 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001843100 e5iryB5 002986997 Q87R50_nD9 Q87R50 Q87R50_VIBPA VP0948 D-Tyr-tRNAtyr deacylase 948 741-830 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001892051 e5szoB4 002986998 Q87HX0_nD1 Q87HX0 Q87HX0_VIBPA VPA0836 3915 21-150 f a.4 5 5.1 5.1.2 beta duplicates or obligate multimers beta-propeller-like beta-propeller 5-bladed 000415887 e2x8sA2 002986999 Q87FP9_nD3 Q87FP9 RSGA2_VIBPA VPA1629 rsgA2 Small ribosomal subunit biogenesis GTPase RsgA 2 4708 331-358 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000277145 e2bekA1 002987000 Q87FP9_nD2 Q87FP9 RSGA2_VIBPA VPA1629 rsgA2 Small ribosomal subunit biogenesis GTPase RsgA 2 4708 96-325 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002506997 e6h4dA1 002987001 Q87FP9_nD1 Q87FP9 RSGA2_VIBPA VPA1629 rsgA2 Small ribosomal subunit biogenesis GTPase RsgA 2 4708 11-95 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002432502 e6hedI1 002987002 Q87T93_nD2 Q87T93 RNPH_VIBPA VP0177 rph Ribonuclease PH 177 156-235 f a.11 245 245.1 245.1.1 a+b two layers Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2 001157620 e3dd6A6 002987003 Q87T93_nD1 Q87T93 RNPH_VIBPA VP0177 rph Ribonuclease PH 177 1-155 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000071321 e1udsA2 002987004 Q877L0_nD1 Q877L0 Q877L0_VIBPA VP1569VPA0896 1569 11-70 f a.21 5022 5022.1 5022.1.1 extended segments Subunit XII of photosystem I reaction centre, PsaM Subunit XII of photosystem I reaction centre, PsaM Subunit XII of photosystem I reaction centre, PsaM 002775758 e7a4pM1 002987005 Q87PU3_nD9 Q87PU3 Q87PU3_VIBPA VP1408 1408 1001-1110 f a.3 11 11.2 11.2.1 beta sandwiches Immunoglobulin-like beta-sandwich C2 domain C2 domain 001679996 e4y7mC1 002987006 Q87PU3_nD7 Q87PU3 Q87PU3_VIBPA VP1408 1408 721-740,821-890 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002818710 e7rdrC2 002987007 Q87PU3_nD5 Q87PU3 Q87PU3_VIBPA VP1408 1408 446-470,491-600 f a.19 4106 4106.1 4106.1.1 few secondary structure elements Zinc hairpin stack Zinc hairpin stack Zinc hairpin stack 002394343 e6bmsD1 002987008 Q87PU3_nD8 Q87PU3 Q87PU3_VIBPA VP1408 1408 891-1000,1111-1129 f a.7 601 601.45 601.45.1 alpha bundles Four-helical up-and-down bundle Type VI secretion protein IcmF helical domain Type VI secretion protein IcmF helical domain 001679997 e4y7mC2 002987009 Q87PU3_nD2 Q87PU3 Q87PU3_VIBPA VP1408 1408 76-245,366-405 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001684507 e5ck3B1 002987010 Q87PU3_nD6 Q87PU3 Q87PU3_VIBPA VP1408 1408 601-720,741-760,791-820 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001413708 e2b1eA1 002987011 Q87PU3_nD4 Q87PU3 Q87PU3_VIBPA VP1408 1408 406-435,471-490 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002436450 e6hd5t1 002987012 Q87PU3_nD3 Q87PU3 Q87PU3_VIBPA VP1408 1408 231-375 f a.11 327 327.9 327.9.1 a+b two layers Alpha-lytic protease prodomain-like Probable GTPase Der, C-terminal domain Probable GTPase Der, C-terminal domain 001411868 e3j8gX2 002987013 Q87PU3_nD1 Q87PU3 Q87PU3_VIBPA VP1408 1408 6-65 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002987014 Q87MN6_nD1 Q87MN6 MNMC_VIBPA VP2195 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 2195 6-260 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001279475 e3ps9A5 002987015 Q87MN6_nD2 Q87MN6 MNMC_VIBPA VP2195 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 2195 261-350,406-480,571-670 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002987016 Q87MN6_nD3 Q87MN6 MNMC_VIBPA VP2195 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 2195 351-405,481-570 f a.11 244 244.1 244.1.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C 001873077 e3djeB2 002987017 Q87JR4_nD1 Q87JR4 Q87JR4_VIBPA VPA0184 GGDEF domain-containing protein 3263 21-210 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002524026 e6nwdA1 002987018 Q87JR4_nD2 Q87JR4 Q87JR4_VIBPA VPA0184 GGDEF domain-containing protein 3263 196-418 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002987019 Q87JD1_nD1 Q87JD1 Y4321_VIBPA VPA0321 UPF0251 protein VPA0321 3401 16-90 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002505916 e6p18Q1 002987020 Q87ML2_nD1 Q87ML2 CCME_VIBPA VP2219 ccmE Cytochrome c-type biogenesis protein CcmE 2219 6-140 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000024153 e1sr3A1 002987021 Q87FN2_nD2 Q87FN2 Q87FN2_VIBPA VPA1647 4726 201-400 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002987022 Q87FN2_nD1 Q87FN2 Q87FN2_VIBPA VPA1647 4726 6-200 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002388968 e6exsA1 002987023 Q87RQ2_nD1 Q87RQ2 Q87RQ2_VIBPA VP0725 DNA polymerase III subunit delta 725 1-140 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102733 e1jr3D3 002987024 Q87RQ2_nD2 Q87RQ2 Q87RQ2_VIBPA VP0725 DNA polymerase III subunit delta 725 141-205 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000052304 e1jr3D2 002987025 Q87RQ2_nD3 Q87RQ2 Q87RQ2_VIBPA VP0725 DNA polymerase III subunit delta 725 211-335 f a.6 138 138.1 138.1.1 alpha arrays DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain 000003385 e1jr3D1 002987026 Q87NL0_nD1 Q87NL0 Q87NL0_VIBPA VP1858 DUF645 family protein 1858 1-59 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002126732 e1jq0A1 002987027 Q87NS7_nD1 Q87NS7 Q87NS7_VIBPA VP1791 DUF4238 domain-containing protein 1791 16-170 f a.14 237 237.1 237.1.1 a+b complex topology ADP-ribosylation ADP-ribosylation ADP-ribosylation 001191308 e4f0eA2 002987028 Q87FM1_nD2 Q87FM1 Q87FM1_VIBPA VPA1658 ATP-grasp domain-containing protein 4737 111-400 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001164578 e3vmmA4 002987029 Q87FM1_nD1 Q87FM1 Q87FM1_VIBPA VPA1658 ATP-grasp domain-containing protein 4737 1-110 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 001837663 e3votA3 002987030 Q87FR6_nD1 Q87FR6 Q87FR6_VIBPA VPA1612 Gate domain-containing protein 4691 26-155 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 002060801 e5l26B1 002987031 Q87RU0_nD1 Q87RU0 DXS_VIBPA VP0686 dxs 1-deoxy-D-xylulose-5-phosphate synthase 686 6-310 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002770696 e7bzy111 002987032 Q87RU0_nD2 Q87RU0 DXS_VIBPA VP0686 dxs 1-deoxy-D-xylulose-5-phosphate synthase 686 311-490 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002511794 e6ouvB2 002987033 Q87RU0_nD3 Q87RU0 DXS_VIBPA VP0686 dxs 1-deoxy-D-xylulose-5-phosphate synthase 686 491-620 f a.17 7522 7522.1 7522.1.1 a/b three-layered sandwiches TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like 001149463 e2o1sD6 002987034 Q87SX5_nD1 Q87SX5 Q87SX5_VIBPA VP0297 PH domain-containing protein 297 6-180 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002722 e1yyvA1 002987035 Q87J36_nD1 Q87J36 Q87J36_VIBPA VPA0417 Leucine-rich repeat protein 3496 21-199 f a.4 207 207.1 207.1.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats 002709300 e6lolA2 002987036 Q87NF4_nD1 Q87NF4 Q87NF4_VIBPA VP1914 1914 1-218 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 000140035 e2xf4A1 002987037 Q87N05_nD1 Q87N05 FADR_VIBPA VP2071 fadR Fatty acid metabolism regulator protein 2071 6-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001495275 e4p96A1 002987038 Q87N05_nD2 Q87N05 FADR_VIBPA VP2071 fadR Fatty acid metabolism regulator protein 2071 81-275 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 001495276 e4p96A2 002987039 Q87LQ8_nD1 Q87LQ8 Q87LQ8_VIBPA VP2553 rpoS RNA polymerase sigma factor RpoS 2553 46-160 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 002715010 e6wmrZ1 002987040 Q87LQ8_nD2 Q87LQ8 Q87LQ8_VIBPA VP2553 rpoS RNA polymerase sigma factor RpoS 2553 161-315 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002715011 e6wmrZ2 002987041 Q87IF9_nD1 Q87IF9 Q87IF9_VIBPA VPA0647 pdhA Pyruvate dehydrogenase E1 component subunit alpha 3726 6-355 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 000010705 e1qs0A1 002987042 Q87G72_nD1 Q87G72 Q87G72_VIBPA VPA1445 4524 1-195 f a.4 207 207.6 207.6.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Serralysin-like metalloprotease-C Serralysin-like metalloprotease-C 001687100 e5cvwA1 002987043 Q87GV7_nD1 Q87GV7 Q87GV7_VIBPA VPA1208 secF Protein-export membrane protein SecF 4287 36-115 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002075784 e5xanB1 002987044 Q87GV7_nD2 Q87GV7 Q87GV7_VIBPA VPA1208 secF Protein-export membrane protein SecF 4287 1-35,116-290 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002987045 Q87P20_nD3 Q87P20 Q87P20_VIBPA VP1698 Type III secretion negative regulator (LscZ) 1698 136-160,236-315 f a.6 3318 3318.1 3318.1.1 alpha arrays Middle domain in transcriptional anti-activator ExsD Middle domain in transcriptional anti-activator ExsD Middle domain in transcriptional anti-activator ExsD 000185244 e3fd9A2 002987046 Q87P20_nD2 Q87P20 Q87P20_VIBPA VP1698 Type III secretion negative regulator (LscZ) 1698 166-235 f a.7 192 192.20 192.20.1 alpha bundles Long alpha-hairpin helical hairpin domain in transcriptional anti-activator ExsD helical hairpin domain in transcriptional anti-activator ExsD 000185245 e3fd9A3 002987047 Q87P20_nD1 Q87P20 Q87P20_VIBPA VP1698 Type III secretion negative regulator (LscZ) 1698 56-135 f a.6 3317 3317.2 3317.2.1 alpha arrays KorB C-terminal domain-like N-terminal domain in transcriptional anti-activator ExsD N-terminal domain in transcriptional anti-activator ExsD 000185243 e3fd9A1 002987048 Q87HY3_nD3 Q87HY3 Q87HY3_VIBPA VPA0823 Pyruvate kinase 3902 341-480 f a.17 7518 7518.1 7518.1.1 a/b three-layered sandwiches PK C-terminal domain-like PK C-terminal domain-like PK C-terminal domain-like 001518055 e3khdB3 002987049 Q87HY3_nD2 Q87HY3 Q87HY3_VIBPA VPA0823 Pyruvate kinase 3902 1-70,171-340 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002537694 e6qxlG3 002987050 Q87HY3_nD1 Q87HY3 Q87HY3_VIBPA VPA0823 Pyruvate kinase 3902 71-170 f a.1 1 1.1 1.1.15 beta barrels cradle loop barrel RIFT-related PK beta-barrel domain-like 002537693 e6qxlG2 002987051 Q87FU8_nD1 Q87FU8 Q87FU8_VIBPA VPA1580 DUF1656 domain-containing protein 4659 16-65 f a.21 1078 1078.1 1078.1.1 extended segments Bd-type quinol oxidase transmembrane helix subunit Bd-type quinol oxidase transmembrane helix subunit Bd-type quinol oxidase transmembrane helix subunit 001838825 e5doqC1 002987052 Q87H17_nD1 Q87H17 Q87H17_VIBPA VPA1148 4227 11-273 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009678 e1ji0A1 002987053 Q79YZ2_nD2 Q79YZ2 Q79YZ2_VIBPA VP0773 773 166-308 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000972338 e3rvqA1 002987054 Q79YZ2_nD1 Q79YZ2 Q79YZ2_VIBPA VP0773 773 21-160 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 000164917 e2ho9A1 002987055 Q87HS1_nD1 Q87HS1 Q87HS1_VIBPA VPA0885 3964 96-189 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 002552601 e6i0nA1 002987056 Q87Q62_nD1 Q87Q62 Q87Q62_VIBPA VP1288 Phosphate-selective porin O and P 1288 16-390 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001168681 e3sybA2 002987057 Q87NA9_nD1 Q87NA9 Q87NA9_VIBPA VP1966 1966 16-430 f a.10 5052 5052.1 5052.1.1 alpha complex topology Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein 002634187 e6s3qA1 002987058 Q87K66_nD1 Q87K66 Q87K66_VIBPA VPA0032 3111 6-275 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002455677 e6m96B1 002987059 Q87RT3_nD1 Q87RT3 Q87RT3_VIBPA VP0694 DUF423 domain-containing protein 694 1-125 f a.9 5038 5038.1 5038.1.1 alpha superhelices Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 002619675 e6t0bn1 002987060 Q87T23_nD1 Q87T23 RRAA_VIBPA VP0247 rraA Regulator of ribonuclease activity A 247 1-170 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000150446 e2yjtA1 002987061 Q87H83_nD3 Q87H83 Q87H83_VIBPA VPA1082 4161 161-295,321-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002987062 Q87H83_nD1 Q87H83 Q87H83_VIBPA VPA1082 4161 1-55 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002391034 e5yszA1 002987063 Q87H83_nD2 Q87H83 Q87H83_VIBPA VPA1082 4161 56-160,296-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001252984 e3oqoC4 002987064 Q87NJ0_nD1 Q87NJ0 Q87NJ0_VIBPA VP1878 1878 6-199 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 002323930 e5t3pC1 002987065 P46232_nD1 P46232 RNT_VIBPA VP2114 rnt Ribonuclease T 2114 6-210 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001145977 e4kb1A1 002987066 Q87HJ7_nD1 Q87HJ7 Q87HJ7_VIBPA VPA0966 4045 6-435 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001139948 e4ldsA1 002987067 Q87NP7_nD1 Q87NP7 Q87NP7_VIBPA VP1821 Antitoxin 1821 16-95 f a.15 4267 4267.1 4267.1.1 a+b duplicates or obligate multimers YefM-like YefM-like YefM-like 002629019 e7bwfD1 002987068 Q87FM9_nD3 Q87FM9 Q87FM9_VIBPA VPA1650 4729 476-720 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 002395642 e6b05A4 002987069 Q87FM9_nD4 Q87FM9 Q87FM9_VIBPA VPA1650 4729 721-910 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 001116572 e3s5iA3 002987070 Q87FM9_nD2 Q87FM9 Q87FM9_VIBPA VPA1650 4729 256-475 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 000067199 e1hr7A2 002987071 Q87FM9_nD1 Q87FM9 Q87FM9_VIBPA VPA1650 4729 26-255 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 002538944 e6ofsA1 002987072 Q87TK4_nD1 Q87TK4 Q87TK4_VIBPA VP0065 2-dehydro-3-deoxy-phosphogluconate aldolase 65 1-200 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001833029 e4e38C1 002987073 Q87SL2_nD1 Q87SL2 Q87SL2_VIBPA VP0411 7,8-dihydroneopterin aldolase 411 6-119 f a.11 230 230.1 230.1.1 a+b two layers T-fold Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 000399778 e3o1kB1 002987074 Q87FT5_nD3 Q87FT5 Q87FT5_VIBPA VPA1593 4672 566-660 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001380946 e3cmgA4 002987075 Q87FT5_nD4 Q87FT5 Q87FT5_VIBPA VPA1593 4672 661-875 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001383 e1ulvA1 002987076 Q87FT5_nD1 Q87FT5 Q87FT5_VIBPA VPA1593 4672 21-465 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002708614 e6lcuA1 002987077 Q87FT5_nD2 Q87FT5 Q87FT5_VIBPA VPA1593 4672 466-560 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 002031884 e5gquA3 002987078 Q87LS5_nD1 Q87LS5 Q87LS5_VIBPA VP2536 2536 6-150 f a.14 1189 1189.1 1189.1.1 a+b complex topology VSG (variant surface glycoprotein) N-terminal domain VSG (variant surface glycoprotein) N-terminal domain VSG (variant surface glycoprotein) N-terminal domain 002337262 e6eluA1 002987079 Q87LS5_nD2 Q87LS5 Q87LS5_VIBPA VP2536 2536 171-330 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000135021 e3hf7A1 002987080 Q87LS5_nD3 Q87LS5 Q87LS5_VIBPA VP2536 2536 331-420 f a.14 217 217.2 217.2.1 a+b complex topology FAD-binding domain-like CorC/HlyC domain-like CorC/HlyC domain-like 001016923 e4hg0A2 002987081 Q87K53_nD4 Q87K53 Q87K53_VIBPA VPA0045 3124 201-305 f a.11 331 331.1 331.1.1 a+b two layers TBP-like TATA-box binding protein-like TATA-box binding protein-like 000073353 e1mpgB2 002987082 Q87K53_nD3 Q87K53 Q87K53_VIBPA VPA0045 3124 141-190 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002987083 Q87K53_nD5 Q87K53 Q87K53_VIBPA VPA0045 3124 306-455 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 000154765 e4b21A1 002987084 Q87K53_nD2 Q87K53 Q87K53_VIBPA VPA0045 3124 86-140 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002792433 e7befG1 002987085 Q87K53_nD1 Q87K53 Q87K53_VIBPA VPA0045 3124 11-80 f a.19 901 901.1 901.1.1 few secondary structure elements Ada DNA repair protein, N-terminal domain (N-Ada 10) Ada DNA repair protein, N-terminal domain (N-Ada 10) Ada DNA repair protein, N-terminal domain (N-Ada 10) 001616108 e1zgwA1 002987086 Q87N00_nD3 Q87N00 Q87N00_VIBPA VP2076 2076 6-20,301-485 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002987087 Q87N00_nD2 Q87N00 Q87N00_VIBPA VP2076 2076 21-65,121-285 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002168239 e6f9gD1 002987088 Q87N00_nD1 Q87N00 Q87N00_VIBPA VP2076 2076 76-120 f 002987089 Q87SF0_nD1 Q87SF0 Q87SF0_VIBPA VP0474 Probable membrane transporter protein 474 1-245 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002987090 Q87J53_nD3 Q87J53 Q87J53_VIBPA VPA0400 3479 126-289 f a.15 886 886.1 886.1.1 a+b duplicates or obligate multimers Probable bacterial effector-binding domain Probable bacterial effector-binding domain Probable bacterial effector-binding domain 000007319 e1jyhA1 002987091 Q87J53_nD2 Q87J53 Q87J53_VIBPA VPA0400 3479 61-125 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001101912 e2k9sA2 002987092 Q87J53_nD1 Q87J53 Q87J53_VIBPA VPA0400 3479 6-60 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002987093 Q87TL5_nD2 Q87TL5 Q87TL5_VIBPA VP0054 Fibronectin type-III domain-containing protein 54 231-350 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001724304 e5halA1 002987094 Q87TL5_nD1 Q87TL5 Q87TL5_VIBPA VP0054 Fibronectin type-III domain-containing protein 54 121-225 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001298749 e4m00A4 002987095 Q87TL5_nD3 Q87TL5 Q87TL5_VIBPA VP0054 Fibronectin type-III domain-containing protein 54 351-515 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000033711 e2g30A1 002987096 Q87KA5_nD1 Q87KA5 ATPD_VIBPA VP3072 atpH ATP synthase subunit delta 3071 1-175 f a.7 563 563.1 563.1.1 alpha bundles ATPD N-terminal domain-like N-terminal domain of the delta subunit of the F1F0-ATP synthase N-terminal domain of the delta subunit of the F1F0-ATP synthase 002631473 e6oqtW1 002987097 Q87Q54_nD1 Q87Q54 TPMT_VIBPA VP1296 tpm Thiopurine S-methyltransferase 1296 6-215 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000305959 e2gb4A1 002987098 Q87J81_nD1 Q87J81 Q87J81_VIBPA VPA0372 Phosphoenolpyruvate synthase 3451 11-350 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001312429 e2olsA3 002987099 Q87J81_nD2 Q87J81 Q87J81_VIBPA VPA0372 Phosphoenolpyruvate synthase 3451 351-475 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 001517963 e2e28A3 002987100 Q87J81_nD3 Q87J81 Q87J81_VIBPA VPA0372 Phosphoenolpyruvate synthase 3451 486-790 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001308667 e2olsA1 002987101 Q87FX0_nD2 Q87FX0 Q87FX0_VIBPA VPA1558 Group-specific protein 4637 41-95 f a.7 604 604.1 604.1.1 alpha bundles Spectrin repeat-like Spectrin repeat Spectrin repeat 001176315 e2oduA2 002987102 Q87FX0_nD1 Q87FX0 Q87FX0_VIBPA VPA1558 Group-specific protein 4637 11-35 f a.21 5035 5035.1 5035.1.1 extended segments Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI 001699792 e4rvyI1 002987103 Q87QR3_nD1 Q87QR3 Q87QR3_VIBPA VP1086 DUF636 domain protein 1086 6-115 f a.18 1103 1103.1 1103.1.1 mixed a+b and a/b uncharacterized protein LPG2148 insertion domain uncharacterized protein LPG2148 insertion domain uncharacterized protein LPG2148 insertion domain 001883379 e5sujA2 002987104 Q87ID3_nD1 Q87ID3 MGSA_VIBPA VPA0673 mgsA Methylglyoxal synthase 3752 6-150 f a.17 7543 7543.1 7543.1.1 a/b three-layered sandwiches Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like 000109531 e1s8aB1 002987105 Q87G99_nD1 Q87G99 Q87G99_VIBPA VPA1418 Catalase 4497 6-415 f a.1 4028 4028.1 4028.1.1 beta barrels Barrel domain in heme-dependent catalases Barrel domain in heme-dependent catalases Barrel domain in heme-dependent catalases 001502655 e4qomB2 002987106 Q87G99_nD2 Q87G99 Q87G99_VIBPA VPA1418 Catalase 4497 416-475 f a.7 4048 4048.1 4048.1.1 alpha bundles Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases 001311789 e4cabB3 002987107 Q87NN3_nD1 Q87NN3 Q87NN3_VIBPA VP1835 Orphan protein 1835 6-125 f a.11 4205 4205.1 4205.1.1 a+b two layers SMI1/KNR4-like SMI1/KNR4-like SMI1/KNR4-like 002575389 e6qbrA1 002987108 Q87KD1_nD2 Q87KD1 Q87KD1_VIBPA VP3046 Trk system potassium uptake protein 3045 166-260 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 000410581 e3pjzB3 002987109 Q87KD1_nD1 Q87KD1 Q87KD1_VIBPA VP3046 Trk system potassium uptake protein 3045 6-145 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002579536 e6v4lA4 002987110 Q87KD1_nD4 Q87KD1 Q87KD1_VIBPA VP3046 Trk system potassium uptake protein 3045 371-480 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 000410580 e3pjzB2 002987111 Q87KD1_nD3 Q87KD1 Q87KD1_VIBPA VP3046 Trk system potassium uptake protein 3045 261-370 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 000410581 e3pjzB3 002987112 Q87GS6_nD2 Q87GS6 Q87GS6_VIBPA VPA1239 4318 51-435 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001447936 e4pedA1 002987113 Q87GS6_nD1 Q87GS6 Q87GS6_VIBPA VPA1239 4318 16-50 f a.6 1007 1007.1 1007.1.1 alpha arrays SopD C-terminal domain SopD C-terminal domain SopD C-terminal domain 001687098 e5cq9B1 002987114 Q87Q37_nD1 Q87Q37 Q87Q37_VIBPA VP1313 SAM-dependent methyltransferase 1313 1-130,156-190 f a.7 159 159.1 159.1.4 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases Type II deoxyuridine triphosphatase-related 000415361 e2yb0E1 002987115 Q87Q37_nD2 Q87Q37 Q87Q37_VIBPA VP1313 SAM-dependent methyltransferase 1313 131-155 f a.11 221 221.1 221.1.5 a+b two layers beta-Grasp Ubiquitin-related Chemotaxis inhibitory protein CHIPS 000158300 e1xeeA1 002987116 Q87N69_nD4 Q87N69 Q87N69_VIBPA VP2006 2006 551-700 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000353408 e3f9uB1 002987117 Q87N69_nD3 Q87N69 Q87N69_VIBPA VP2006 2006 301-545 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002987118 Q87N69_nD1 Q87N69 Q87N69_VIBPA VP2006 2006 31-185 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002387841 e6c29A1 002987119 Q87N69_nD2 Q87N69 Q87N69_VIBPA VP2006 2006 186-290 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002387842 e6c29A2 002987120 Q87R70_nD1 Q87R70 Q87R70_VIBPA VP0928 menF Isochorismate synthase MenF 928 1-425 f a.15 880 880.1 880.1.1 a+b duplicates or obligate multimers ADC synthase ADC synthase ADC synthase 000007316 e3bznA1 002987121 Q87Q61_nD1 Q87Q61 Q87Q61_VIBPA VP1289 1289 1-155 f a.7 601 601.14 601.14.1 alpha bundles Four-helical up-and-down bundle Hemerythrin Hemerythrin 001549356 e4xpwA1 002987122 Q87Q61_nD2 Q87Q61 Q87Q61_VIBPA VP1289 1289 176-370 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002987123 Q87K05_nD1 Q87K05 Q87K05_VIBPA VPA0093 HAD-IB family hydrolase 3172 6-200 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000170261 e3fvvA1 002987124 Q87Q28_nD1 Q87Q28 Q87Q28_VIBPA VP1322 1322 1-145,176-250 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002572485 e6l7tC2 002987125 Q87Q28_nD2 Q87Q28 Q87Q28_VIBPA VP1322 1322 146-175 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002576225 e6ox6A1 002987126 Q87QE8_nD4 Q87QE8 Q87QE8_VIBPA VP1201 histidine kinase 1201 401-560 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002987127 Q87QE8_nD3 Q87QE8 Q87QE8_VIBPA VP1201 histidine kinase 1201 311-400 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002987128 Q87QE8_nD1 Q87QE8 Q87QE8_VIBPA VP1201 histidine kinase 1201 86-205 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002987129 Q87QE8_nD2 Q87QE8 Q87QE8_VIBPA VP1201 histidine kinase 1201 6-85,206-310 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002987130 Q87GQ3_nD5 Q87GQ3 Q87GQ3_VIBPA VPA1262 TIR domain-containing protein 4341 921-1100 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001695363 e5anrA1 002987131 Q87GQ3_nD2 Q87GQ3 Q87GQ3_VIBPA VPA1262 TIR domain-containing protein 4341 136-160,211-320 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002388190 e5n9bA2 002987132 Q87GQ3_nD1 Q87GQ3 Q87GQ3_VIBPA VPA1262 TIR domain-containing protein 4341 1-135,161-210 f a.19 382 382.1 382.1.1 few secondary structure elements Snake toxin-like Snake toxin-like Snake toxin-like 002739986 e7bprA2 002987133 Q87GQ3_nD4 Q87GQ3 Q87GQ3_VIBPA VPA1262 TIR domain-containing protein 4341 606-920 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002089790 e5wy3B1 002987134 Q87GQ3_nD3 Q87GQ3 Q87GQ3_VIBPA VPA1262 TIR domain-containing protein 4341 401-590 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 001227839 e2ze4A3 002987135 Q87QS4_nD2 Q87QS4 Q87QS4_VIBPA VP1075 Tim44 domain-containing protein 1075 61-95 f a.19 539 539.1 539.1.1 few secondary structure elements Crustacean Hyperglycemic Hormone (CHH)-like Crustacean Hyperglycemic Hormone (CHH)-like Crustacean Hyperglycemic Hormone (CHH)-like 001891477 e5b5iB1 002987136 Q87QS4_nD1 Q87QS4 Q87QS4_VIBPA VP1075 Tim44 domain-containing protein 1075 26-50 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002644549 e6yufC2 002987137 Q87QS4_nD3 Q87QS4 Q87QS4_VIBPA VP1075 Tim44 domain-containing protein 1075 121-145 f a.7 7111 7111.1 7111.1.1 alpha bundles Ubiquinol-cytochrome C chaperone, C-terminal domain Ubiquinol-cytochrome C chaperone, C-terminal domain Ubiquinol-cytochrome C chaperone, C-terminal domain 002576239 e6rwtA1 002987138 Q87FR1_nD1 Q87FR1 MTGA_VIBPA VPA1617 mtgA Biosynthetic peptidoglycan transglycosylase 4696 21-220 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001933509 e5hlbA3 002987139 Q87N43_nD2 Q87N43 Q87N43_VIBPA VP2032 2032 46-55,96-345 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001122940 e4kwbA1 002987140 Q87N43_nD1 Q87N43 Q87N43_VIBPA VP2032 2032 56-95 f a.1 9 9.10 9.10.1 beta barrels Lipocalins/Streptavidin Uncharacterized protein bvu_3222 Uncharacterized protein bvu_3222 000863416 e4gdzA1 002987141 Q87J99_nD2 Q87J99 Q87J99_VIBPA VPA0354 3433 146-265,326-355 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002987142 Q87J99_nD1 Q87J99 Q87J99_VIBPA VPA0354 3433 31-145,266-325 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002987143 Q87MP4_nD1 Q87MP4 Q87MP4_VIBPA VP2187 2187 121-200 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 000157953 e1x60A1 002987144 Q87LB5_nD1 Q87LB5 Q87LB5_VIBPA VP2697 2696 36-65 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 002485481 e6gv9L1 002987145 Q79YT9_nD1 Q79YT9 Q79YT9_VIBPA VPA0981 C4-dicarboxylate transporter 4060 1-443 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002987146 Q87PK6_nD1 Q87PK6 Q87PK6_VIBPA VP1496 Molybdopterin molybdenumtransferase 1496 6-170 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009652 e1np6A1 002987147 Q87PK6_nD5 Q87PK6 Q87PK6_VIBPA VP1496 Molybdopterin molybdenumtransferase 1496 511-590 f a.1 70 70.1 70.1.1 beta barrels beta-clip MoeA C-terminal domain-like MoeA C-terminal domain-like 000027166 e2nrpB1 002987148 Q87PK6_nD2 Q87PK6 Q87PK6_VIBPA VP1496 Molybdopterin molybdenumtransferase 1496 236-325 f a.14 3052 3052.1 3052.1.1 a+b complex topology MoeA domain II MoeA domain II MoeA domain II 000007658 e2ftsA3 002987149 Q87PK6_nD4 Q87PK6 Q87PK6_VIBPA VP1496 Molybdopterin molybdenumtransferase 1496 191-210,361-510 f a.17 7541 7541.1 7541.1.1 a/b three-layered sandwiches Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins 002710597 e6q32A1 002987150 Q87PK6_nD3 Q87PK6 Q87PK6_VIBPA VP1496 Molybdopterin molybdenumtransferase 1496 211-235,326-360 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 000004983 e1g8lA2 002987151 Q87T74_nD1 Q87T74 KDKA_VIBPA VP0196 kdkA 3-deoxy-D-manno-octulosonic acid kinase 196 16-235 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 002715151 e6wqxC1 002987152 Q87TQ8_nD1 Q87TQ8 Q87TQ8_VIBPA VP0010 10 16-40 f a.19 7020 7020.1 7020.1.1 few secondary structure elements Influenza A M2 transmembrane domain Influenza A M2 transmembrane domain Influenza A M2 transmembrane domain 002570365 e6ougC1 002987153 Q87MT0_nD3 Q87MT0 Q87MT0_VIBPA VP2151 2151 471-620 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000009218 e1ps9A2 002987154 Q87MT0_nD1 Q87MT0 Q87MT0_VIBPA VP2151 2151 1-335 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008728 e1ps9A1 002987155 Q87MT0_nD2 Q87MT0 Q87MT0_VIBPA VP2151 2151 336-470,621-665 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002987156 Q87HR2_nD2 Q87HR2 Q87HR2_VIBPA VPA0895 DUF4115 domain-containing protein 3974 161-238 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001030922 e1tq5A3 002987157 Q87HR2_nD1 Q87HR2 Q87HR2_VIBPA VPA0895 DUF4115 domain-containing protein 3974 1-75 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002831711 e7eymA1 002987158 Q87SX4_nD1 Q87SX4 Q87SX4_VIBPA VP0298 DUF645 domain-containing protein 298 11-50 f a.21 5074 5074.1 5074.1.1 extended segments Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits 002802223 e7pbwAD1 002987159 Q87PI0_nD1 Q87PI0 Q87PI0_VIBPA VP1522 Terpene synthase 1522 21-305 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002738110 e6bcuB1 002987160 Q87IZ2_nD2 Q87IZ2 Q87IZ2_VIBPA VPA0464 3543 401-610 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001145865 e3l9wB1 002987161 Q87IZ2_nD1 Q87IZ2 Q87IZ2_VIBPA VPA0464 3543 6-400 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001422103 e4czbB1 002987162 Q87MZ7_nD1 Q87MZ7 Q87MZ7_VIBPA VP2079 2079 6-290 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 002817087 e7kypF1 002987163 Q87TI6_nD1 Q87TI6 Q87TI6_VIBPA VP0083 Lipoprotein 83 26-55 f a.11 3513 3513.1 3513.1.1 a+b two layers Putative lipoprotein LppA Putative lipoprotein LppA Putative lipoprotein LppA 000184922 e2v7sA1 002987164 Q87QD5_nD3 Q87QD5 Q87QD5_VIBPA VP1214 1214 371-430 f a.19 375 375.15 375.15.1 few secondary structure elements Rubredoxin-like Zinc finger domain of DNA repair helicase RadD Zinc finger domain of DNA repair helicase RadD 002526330 e6jdeB3 002987165 Q87QD5_nD4 Q87QD5 Q87QD5_VIBPA VP1214 1214 431-583 f a.14 7091 7091.1 7091.1.1 a+b complex topology C-terminal domain of DNA repair helicase RadD C-terminal domain of DNA repair helicase RadD C-terminal domain of DNA repair helicase RadD 002526331 e6jdeB4 002987166 Q87QD5_nD2 Q87QD5 Q87QD5_VIBPA VP1214 1214 196-370 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002560607 e6jdeA2 002987167 Q87QD5_nD1 Q87QD5 Q87QD5_VIBPA VP1214 1214 1-195 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002559768 e6jdeB1 002987168 Q87JI2_nD3 Q87JI2 FLGI1_VIBPA VPA0271 flgI1 Flagellar P-ring protein 1 3350 261-285,331-373 f a.11 306 306.8 306.8.1 a+b two layers Glucose permease domain IIB-like TM1457-like TM1457-like 000005581 e2idlA1 002987169 Q87JI2_nD2 Q87JI2 FLGI1_VIBPA VPA0271 flgI1 Flagellar P-ring protein 1 3350 26-40,186-255 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002722356 e7kz9A3 002987170 Q87JI2_nD1 Q87JI2 FLGI1_VIBPA VPA0271 flgI1 Flagellar P-ring protein 1 3350 41-185 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000387757 e2w7uC1 002987171 Q87IF5_nD1 Q87IF5 Q87IF5_VIBPA VPA0652 Copper resistance protein CopZ 3730 26-150 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 002527840 e6p1gA1 002987172 Q87HZ1_nD1 Q87HZ1 Q87HZ1_VIBPA VPA0815 Endo/exonuclease/phosphatase domain-containing protein 3894 11-324 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 002754119 e7ax1A1 002987173 Q87IC2_nD1 Q87IC2 Q87IC2_VIBPA VPA0684 3763 6-430 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001014986 e4k38A1 002987174 Q87IJ2_nD1 Q87IJ2 Q87IJ2_VIBPA VPA0614 Integral membrane protein 3693 11-175 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002756447 e7d5iB2 002987175 Q87FP2_nD2 Q87FP2 Q87FP2_VIBPA VPA1636 XRE family transcriptional regulator 4715 121-170 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002392035 e6dcrA2 002987176 Q87FP2_nD1 Q87FP2 Q87FP2_VIBPA VPA1636 XRE family transcriptional regulator 4715 26-120 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000317770 e2ox6C1 002987177 Q87RC5_nD1 Q87RC5 MINE_VIBPA VP0872 minE Cell division topological specificity factor 872 36-85 f a.15 812 812.1 812.1.1 a+b duplicates or obligate multimers MinE-like Cell division protein MinE topological specificity domain Cell division protein MinE topological specificity domain 001032192 e3r9jD1 002987178 Q87NL6_nD3 Q87NL6 Q87NL6_VIBPA VP1852 Stc1 domain-containing protein 1852 56-100 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000008041 e2fiyA1 002987179 Q87NL6_nD4 Q87NL6 Q87NL6_VIBPA VP1852 Stc1 domain-containing protein 1852 101-145 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001715231 e5fmfR2 002987180 Q87NL6_nD1 Q87NL6 Q87NL6_VIBPA VP1852 Stc1 domain-containing protein 1852 1-30 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 002646917 e6vy1g1 002987181 Q87NL6_nD2 Q87NL6 Q87NL6_VIBPA VP1852 Stc1 domain-containing protein 1852 31-55 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002987182 Q87NL6_nD5 Q87NL6 Q87NL6_VIBPA VP1852 Stc1 domain-containing protein 1852 146-225 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 002132896 e5w3vA1 002987183 Q87GX2_nD1 Q87GX2 PEPT_VIBPA VPA1193 pepT Peptidase T 4272 1-205,321-405 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 000105710 e1vixA2 002987184 Q87GX2_nD2 Q87GX2 PEPT_VIBPA VPA1193 pepT Peptidase T 4272 206-320 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 000135887 e3ifeA1 002987185 Q87P65_nD1 Q87P65 Q87P65_VIBPA VP1653 1653 1-135,251-385 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001312286 e4tpgA1 002987186 Q87P65_nD2 Q87P65 Q87P65_VIBPA VP1653 1653 136-185,441-490 f a.21 5056 5056.1 5056.1.1 extended segments Gated mechanosensitive channel Gated mechanosensitive channel Gated mechanosensitive channel 000061253 e2oarB1 002987187 Q87P65_nD3 Q87P65 Q87P65_VIBPA VP1653 1653 206-225,396-440 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002807378 e7slaA1 002987188 Q87NI5_nD1 Q87NI5 Q87NI5_VIBPA VP1883 6-carboxy-5,6,7,8-tetrahydropterin synthase 1883 16-135 f a.11 230 230.1 230.1.1 a+b two layers T-fold Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 000314075 e2obaF1 002987189 Q87RC7_nD3 Q87RC7 Q87RC7_VIBPA VP0870 870 456-560 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 001203670 e3r44A6 002987190 Q87RC7_nD1 Q87RC7 Q87RC7_VIBPA VP0870 870 21-205 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002624999 e6oz1A1 002987191 Q87RC7_nD2 Q87RC7 Q87RC7_VIBPA VP0870 870 206-455 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002987192 Q87L79_nD1 Q87L79 Q87L79_VIBPA VP2733 Omp85 domain-containing protein 2732 1-390 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001562388 e4ql0A3 002987193 Q87R08_nD2 Q87R08 Y990_VIBPA VP0990 UPF0304 protein VP0990 990 51-165 f a.6 4981 4981.1 4981.1.1 alpha arrays YfbU-like, C-terminal subdomain YfbU-like, C-terminal subdomain YfbU-like, C-terminal subdomain 001288723 e4lr3I2 002987194 Q87R08_nD1 Q87R08 Y990_VIBPA VP0990 UPF0304 protein VP0990 990 1-50 f a.8 4359 4359.1 4359.1.1 alpha duplicates or obligate multimers YfbU-like, N-terminal subdomain YfbU-like, N-terminal subdomain YfbU-like, N-terminal subdomain 000058640 e1wpbJ2 002987195 Q87Q31_nD2 Q87Q31 Q87Q31_VIBPA VP1319 PS_pyruv_trans domain-containing protein 1319 196-370 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001383628 e3q3eA5 002987196 Q87Q31_nD1 Q87Q31 Q87Q31_VIBPA VP1319 PS_pyruv_trans domain-containing protein 1319 1-50,76-195 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002647238 e6ldqC1 002987197 Q87L89_nD1 Q87L89 Q87L89_VIBPA VP2723 RepB 2722 1-75 f a.11 896 896.1 896.1.1 a+b two layers SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related 002106303 e5xy3k1 002987198 Q87QC8_nD1 Q87QC8 Q87QC8_VIBPA VP1221 1221 26-120 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001890618 e5lo9A4 002987199 Q87QC8_nD2 Q87QC8 Q87QC8_VIBPA VP1221 1221 121-205 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000235712 e3ziyA3 002987200 Q87HV0_nD1 Q87HV0 Q87HV0_VIBPA VPA0856 3935 1-155,196-310 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000370037 e3gi9C1 002987201 Q87HV0_nD2 Q87HV0 Q87HV0_VIBPA VPA0856 3935 166-195 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 001684581 e5da0A1 002987202 Q87N72_nD1 Q87N72 Q87N72_VIBPA VP2003 Methyltransferase domain-containing protein 2003 11-224 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002591910 e6lyhA1 002987203 Q87T46_nD1 Q87T46 Q87T46_VIBPA VP0224 224 1-290 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000143081 e2ydxA1 002987204 Q87QP3_nD1 Q87QP3 LOLA_VIBPA VP1106 lolA Outer-membrane lipoprotein carrier protein 1106 26-205 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 000137630 e2w7qA1 002987205 Q87L90_nD4 Q87L90 CYSJ_VIBPA VP2722 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component 2721 471-623 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 002453087 e6efvA2 002987206 Q87L90_nD3 Q87L90 CYSJ_VIBPA VP2722 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component 2721 306-405 f a.7 3687 3687.1 3687.1.1 alpha bundles NADPH-cytochrome p450 reductase helical insertion domain NADPH-cytochrome p450 reductase helical insertion domain NADPH-cytochrome p450 reductase helical insertion domain 001128371 e1ddgB3 002987207 Q87L90_nD2 Q87L90 CYSJ_VIBPA VP2722 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component 2721 241-305,406-470 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001779755 e4yalB1 002987208 Q87L90_nD1 Q87L90 CYSJ_VIBPA VP2722 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component 2721 36-60,81-235 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 000136318 e3hr4A1 002987209 Q87TE9_nD1 Q87TE9 Q87TE9_VIBPA VP0120 DUF4124 domain-containing protein 120 91-190 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000185592 e3va6A3 002987210 Q87FV6_nD1 Q87FV6 Q87FV6_VIBPA VPA1572 HSDR_N_2 domain-containing protein 4651 11-175 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000185517 e3s1sA1 002987211 Q87FV6_nD2 Q87FV6 Q87FV6_VIBPA VPA1572 HSDR_N_2 domain-containing protein 4651 181-240 f a.6 148 148.1 148.1.1 alpha arrays Histone-like Histone-related Histone 001492374 e4wv4B1 002987212 Q87FV6_nD3 Q87FV6 Q87FV6_VIBPA VPA1572 HSDR_N_2 domain-containing protein 4651 276-368 f a.11 241 241.5 241.5.1 a+b two layers Type III secretory system chaperone-like DNA-binding C-terminal domain of the transcription factor MotA DNA-binding C-terminal domain of the transcription factor MotA 002521280 e6k4yM1 002987213 Q56712_nD1 Q56712 FLAC_VIBPA VP0788 flaC Polar flagellin C 788 1-170,281-384 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002987214 Q56712_nD2 Q56712 FLAC_VIBPA VP0788 flaC Polar flagellin C 788 171-280 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002559772 e6iwyA3 002987215 Q79YY2_nD3 Q79YY2 Q79YY2_VIBPA VP1551 1551 341-379 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 000048610 e2jy8A1 002987216 Q79YY2_nD2 Q79YY2 Q79YY2_VIBPA VP1551 1551 201-335 f a.11 331 331.1 331.1.1 a+b two layers TBP-like TATA-box binding protein-like TATA-box binding protein-like 001487331 e4cijB2 002987217 Q79YY2_nD1 Q79YY2 Q79YY2_VIBPA VP1551 1551 41-55,81-200 f a.11 331 331.1 331.1.1 a+b two layers TBP-like TATA-box binding protein-like TATA-box binding protein-like 001487330 e4cijB1 002987218 Q87K07_nD2 Q87K07 Q87K07_VIBPA VPA0091 3170 61-145 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000315937 e2gqqC2 002987219 Q87K07_nD1 Q87K07 Q87K07_VIBPA VPA0091 3170 1-55 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000377610 e2w25B1 002987220 Q87LQ0_nD2 Q87LQ0 ENO_VIBPA VP2561 eno Enolase 131-433 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002553359 e6d3qD2 002987221 Q87LQ0_nD1 Q87LQ0 ENO_VIBPA VP2561 eno Enolase 1-130 f a.11 218 218.1 218.1.1 a+b two layers Enolase-N/ribosomal protein Enolase N-terminal domain-like Enolase N-terminal domain-like 002553358 e6d3qD1 002987222 Q87QW5_nD1 Q87QW5 Q87QW5_VIBPA VP1034 cmoM tRNA 5-carboxymethoxyuridine methyltransferase 1034 6-260 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000154006 e4htfB1 002987223 Q87T35_nD2 Q87T35 Q87T35_VIBPA VP0235 235 141-260 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001713017 e3nklA1 002987224 Q87T35_nD1 Q87T35 Q87T35_VIBPA VP0235 235 1-135 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 001153052 e1y2mB5 002987225 Q87T35_nD3 Q87T35 Q87T35_VIBPA VP0235 235 261-630 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002706400 e7kn1B1 002987226 Q87H86_nD1 Q87H86 Q87H86_VIBPA VPA1079 4158 6-243 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 001096332 e4mchA1 002987227 Q87LI9_nD2 Q87LI9 GLSA_VIBPA VP2623 glsA Glutaminase 2622 1-60,196-305 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 002156849 e5uqeB1 002987228 Q87LI9_nD1 Q87LI9 GLSA_VIBPA VP2623 glsA Glutaminase 2622 61-195 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 000062670 e1u60B1 002987229 Q87LH0_nD2 Q87LH0 Q87LH0_VIBPA VP2642 2641 146-240 f a.2 3523 3523.1 3523.1.1 beta meanders Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) 002464332 e6mjpG2 002987230 Q87LH0_nD1 Q87LH0 Q87LH0_VIBPA VP2642 2641 6-135,241-355 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002464331 e6mjpG1 002987231 Q87S02_nD1 Q87S02 Q87S02_VIBPA VP0622 622 6-500 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002444945 e6csfM1 002987232 Q87I46_nD1 Q87I46 Q87I46_VIBPA VPA0760 3839 11-185 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000143010 e3r95A1 002987233 Q87T54_nD2 Q87T54 Q87T54_VIBPA VP0216 YjbG 216 151-245 f a.11 221 221.8 221.8.1 a+b two layers beta-Grasp GfcC GfcC 000146308 e3p42A2 002987234 Q87T54_nD1 Q87T54 Q87T54_VIBPA VP0216 YjbG 216 31-150 f a.11 221 221.8 221.8.1 a+b two layers beta-Grasp GfcC GfcC 000146307 e3p42A1 002987235 Q87J89_nD1 Q87J89 Q87J89_VIBPA VPA0364 3443 71-110,181-215 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002987236 Q87J89_nD2 Q87J89 Q87J89_VIBPA VPA0364 3443 111-180 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001632108 e4dk0A2 002987237 Q87J89_nD4 Q87J89 Q87J89_VIBPA VPA0364 3443 46-55,296-370 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002987238 Q87J89_nD3 Q87J89 Q87J89_VIBPA VPA0364 3443 56-70,216-295 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002987239 Q87JT6_nD2 Q87JT6 Q87JT6_VIBPA VPA0162 3241 171-308 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002521035 e6r3zA1 002987240 Q87JT6_nD1 Q87JT6 Q87JT6_VIBPA VPA0162 3241 26-170 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002521036 e6r3zA2 002987241 Q87SS0_nD1 Q87SS0 Q87SS0_VIBPA VP0352 Acetolactate synthase 352 6-185 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002157252 e5wj1A1 002987242 Q87SS0_nD2 Q87SS0 Q87SS0_VIBPA VP0352 Acetolactate synthase 352 186-365 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 000360056 e3ea4A1 002987243 Q87SS0_nD3 Q87SS0 Q87SS0_VIBPA VP0352 Acetolactate synthase 352 366-570 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002760966 e7egvA2 002987244 Q87HS7_nD1 Q87HS7 Q87HS7_VIBPA VPA0879 UDP-glucose 4-epimerase 3958 1-335 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000096654 e1a9yA1 002987245 Q87PF7_nD1 Q87PF7 Q87PF7_VIBPA VP1545 NusG_II domain-containing protein 1545 46-128 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002103527 e5t7aA1 002987246 Q87ID6_nD1 Q87ID6 Q87ID6_VIBPA VPA0670 50S ribosomal protein L29 3749 23-55 f a.8 562 562.1 562.1.1 alpha duplicates or obligate multimers NblA-like (Pfam 04485) NblA-like (Pfam 04485) NblA-like (Pfam 04485) 000058518 e1ojhD1 002987247 Q87M45_nD2 Q87M45 Q87M45_VIBPA VP2413 2413 146-400 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000348697 e3ea0B1 002987248 Q87M45_nD1 Q87M45 Q87M45_VIBPA VP2413 2413 6-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001088260 e4jgiB1 002987249 Q87QW8_nD1 Q87QW8 TORD_VIBPA VP1031 torD Chaperone protein TorD 1031 1-215 f a.7 629 629.1 629.1.1 alpha bundles TorD-like (Pfam 06192) TorD-like (Pfam 06192) TorD-like (Pfam 06192) 000360395 e3efpB1 002987250 Q87HB9_nD1 Q87HB9 Q87HB9_VIBPA VPA1046 Hpt domain-containing protein 4125 1-113 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002987251 Q87HA7_nD1 Q87HA7 Q87HA7_VIBPA VPA1058 4137 116-255,426-454 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001520776 e2hauB1 002987252 Q87HA7_nD2 Q87HA7 Q87HA7_VIBPA VPA1058 4137 31-115,256-440 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002617704 e4eswA2 002987253 Q87QM5_nD1 Q87QM5 Q87QM5_VIBPA VP1124 DUF2878 domain-containing protein 1124 6-165 f a.10 1015 1015.1 1015.1.1 alpha complex topology Insulin-induced gene (Insig) homologs Insulin-induced gene (Insig) homologs Insulin-induced gene (Insig) homologs 001697371 e4xu5A1 002987254 Q87LG8_nD2 Q87LG8 AMPA_VIBPA VP2644 pepA Probable cytosol aminopeptidase 2643 181-500 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 000105665 e1gytA1 002987255 Q87LG8_nD1 Q87LG8 AMPA_VIBPA VP2644 pepA Probable cytosol aminopeptidase 2643 1-180 f a.17 7529 7529.1 7529.1.1 a/b three-layered sandwiches Macro domain-like Macro domain-like Macro domain-like 000010497 e1gytA2 002987256 Q87T57_nD1 Q87T57 Q87T57_VIBPA VP0213 lpxM Lipid A biosynthesis myristoyltransferase 213 26-329 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 001890022 e5knkB1 002987257 Q87HZ6_nD1 Q87HZ6 Q87HZ6_VIBPA VPA0810 OMP_b-brl domain-containing protein 3889 26-190 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000141724 e2x27X1 002987258 Q87HJ5_nD2 Q87HJ5 Q87HJ5_VIBPA VPA0968 hydroxymethylglutaryl-CoA reductase (NADPH) 4047 21-145,256-415 f a.11 304 304.31 304.31.2 a+b two layers Alpha-beta plaits HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 000343598 e3cd5B2 002987259 Q87HJ5_nD1 Q87HJ5 Q87HJ5_VIBPA VPA0968 hydroxymethylglutaryl-CoA reductase (NADPH) 4047 146-255 f a.11 304 304.31 304.31.1 a+b two layers Alpha-beta plaits HMG-CoA reductase NAD-binding domain of HMG-CoA reductase 000065381 e1dqaC1 002987260 Q87PK8_nD2 Q87PK8 NAGK_VIBPA VP1494 nagK N-acetyl-D-glucosamine kinase 1494 101-300 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000147676 e4db3A1 002987261 Q87PK8_nD1 Q87PK8 NAGK_VIBPA VP1494 nagK N-acetyl-D-glucosamine kinase 1494 1-100 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011222 e2ap1A2 002987262 Q87M02_nD5 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 576-690 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001390527 e4b3xA2 002987263 Q87M02_nD2 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 66-95 f a.8 4207 4207.1 4207.1.1 alpha duplicates or obligate multimers Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21) 002075290 e5n9jD1 002987264 Q87M02_nD6 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 691-800 f a.17 7526 7526.1 7526.1.1 a/b three-layered sandwiches Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 Initiation factor IF2/eIF5b, domain 3 002491028 e6o9kz2 002987265 Q87M02_nD1 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 1-55 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001098014 e4b43A3 002987266 Q87M02_nD4 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 331-575 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001098014 e4b43A3 002987267 Q87M02_nD3 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 101-235 f a.21 3462 3462.1 3462.1.1 extended segments V-type proton ATPase subunit G V-type proton ATPase subunit G V-type proton ATPase subunit G 002596248 e6vq7M1 002987268 Q87M02_nD7 Q87M02 IF2_VIBPA VP2456 infB Translation initiation factor IF-2 2456 806-900 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001781039 e3jcjf3 002987269 Q87JE3_nD1 Q87JE3 Q87JE3_VIBPA VPA0310 Acyl-CoA synthetase 3389 1-119 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 000373012 e3iuwB1 002987270 Q87LV3_nD1 Q87LV3 Q87LV3_VIBPA VP2505 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 2505 1-160 f a.11 304 304.45 304.45.1 a+b two layers Alpha-beta plaits 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 001900613 e1cbkA1 002987271 Q87NB1_nD2 Q87NB1 Q87NB1_VIBPA VP1964 1964 166-410 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002987272 Q87NB1_nD1 Q87NB1 Q87NB1_VIBPA VP1964 1964 1-165 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002148238 e5u29C3 002987273 Q87NB1_nD3 Q87NB1 Q87NB1_VIBPA VP1964 1964 411-510 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002625246 e6sq8B1 002987274 Q87KK1_nD1 Q87KK1 Q87KK1_VIBPA VP2976 EVE domain-containing protein 2975 1-150 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 000000183 e2eveA1 002987275 Q87K20_nD1 Q87K20 Q87K20_VIBPA VPA0078 3157 6-170 f a.8 6155 6155.2 6155.2.1 alpha duplicates or obligate multimers TOG superfamily PnuC PnuC 001400358 e4qtnC1 002987276 Q87HD0_nD1 Q87HD0 Q87HD0_VIBPA VPA1035 Type VI secretion system contractile sheath small subunit 4114 36-130 f a.17 2499 2499.2 2499.2.1 a/b three-layered sandwiches Subtilisin-like Domain III of tail sheath protein Gp18 Domain III of tail sheath protein Gp18 002152022 e5n8nM1 002987277 Q87HD0_nD2 Q87HD0 Q87HD0_VIBPA VPA1035 Type VI secretion system contractile sheath small subunit 4114 131-159 f a.17 2499 2499.2 2499.2.1 a/b three-layered sandwiches Subtilisin-like Domain III of tail sheath protein Gp18 Domain III of tail sheath protein Gp18 001546185 e4ps2A1 002987278 Q87SZ9_nD1 Q87SZ9 RS8_VIBPA VP0271 rpsH 30S ribosomal protein S8 271 6-65 f a.11 320 320.2 320.2.1 a+b two layers R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain 001859976 e5j8aBH1 002987279 Q87SZ9_nD2 Q87SZ9 RS8_VIBPA VP0271 rpsH 30S ribosomal protein S8 271 71-130 f a.11 4988 4988.1 4988.1.1 a+b two layers Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain 002546316 e6spfh2 002987280 Q87MS0_nD1 Q87MS0 Q87MS0_VIBPA VP2161 Cofac_haem_bdg domain-containing protein 2161 31-295 f a.17 4244 4244.1 4244.1.1 a/b three-layered sandwiches EreA/ChaN-like EreA/ChaN-like EreA/ChaN-like 000009792 e2g5gX1 002987281 Q87I37_nD1 Q87I37 Q87I37_VIBPA VPA0769 DUF2384 domain-containing protein 3848 16-145 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002414154 e6gw6E1 002987282 Q87IT1_nD1 Q87IT1 Q87IT1_VIBPA VPA0525 3604 1-295 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002987283 Q87SG8_nD3 Q87SG8 Q87SG8_VIBPA VP0456 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 456 316-454 f a.17 7570 7570.1 7570.1.1 a/b three-layered sandwiches MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 001519097 e4qf5A3 002987284 Q87SG8_nD2 Q87SG8 Q87SG8_VIBPA VP0456 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 456 86-315 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001519093 e4qdiA2 002987285 Q87SG8_nD1 Q87SG8 Q87SG8_VIBPA VP0456 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 456 1-85 f a.17 2493 2493.1 2493.1.1 a/b three-layered sandwiches MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like 000011450 e1gg4A3 002987286 Q87JL9_nD1 Q87JL9 Q87JL9_VIBPA VPA0230 3309 1-90 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 000010098 e1vkrA1 002987287 Q87P15_nD1 Q87P15 Q87P15_VIBPA VP1703 1703 1-260,481-500 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901310 e4h7nA2 002987288 Q87P15_nD2 Q87P15 Q87P15_VIBPA VP1703 1703 261-480 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001900717 e2d4eB1 002987289 Q87RM9_nD1 Q87RM9 Q87RM9_VIBPA VP0749 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 749 1-155 f a.14 299 299.1 299.1.1 a+b complex topology YbaK/ProRS associated domain YbaK/ProRS associated domain YbaK/ProRS associated domain 000007513 e1dbxA1 002987290 Q87P63_nD1 Q87P63 Q87P63_VIBPA VP1655 1655 26-120,256-323 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600407 e4dddA2 002987291 Q87P63_nD2 Q87P63 Q87P63_VIBPA VP1655 1655 121-255 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518774 e1us5A2 002987292 Q87T27_nD1 Q87T27 Q87T27_VIBPA VP0243 Transcriptional regulator 243 1-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002595 e2a61A1 002987293 Q87T27_nD2 Q87T27 Q87T27_VIBPA VP0243 Transcriptional regulator 243 76-204 f a.14 873 873.1 873.1.1 a+b complex topology H-NOX domain H-NOX domain H-NOX domain 001811353 e5frwA1 002987294 Q87LY2_nD2 Q87LY2 Q87LY2_VIBPA VP2476 2476 136-160 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002987295 Q87LY2_nD1 Q87LY2 Q87LY2_VIBPA VP2476 2476 86-125 f a.17 3110 3110.1 3110.1.1 a/b three-layered sandwiches STT3/PglB/AglB core domain STT3/PglB/AglB core domain STT3/PglB/AglB core domain 002562574 e6s7oA1 002987296 Q87LY2_nD3 Q87LY2 Q87LY2_VIBPA VP2476 2476 31-85,161-360 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002770734 e7eebD1 002987297 Q87JA0_nD1 Q87JA0 Q87JA0_VIBPA VPA0353 Nucleotide pyrophosphatase 3432 1-274 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 001569468 e4upiA1 002987298 Q87PY0_nD1 Q87PY0 Q87PY0_VIBPA VP1370 ABM domain-containing protein 1370 1-95 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 002598452 e6qpaT2 002987299 Q87T48_nD1 Q87T48 Q87T48_VIBPA VP0222 dTDP-glucose 4,6-dehydratase 222 1-360 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000096693 e1keuB1 002987300 Q87HE0_nD1 Q87HE0 Q87HE0_VIBPA VPA1025 Type VI secretion protein 4104 6-95 f a.1 3174 3174.3 3174.3.1 beta barrels Ribosomal protein L14-like PAAR-repeat protein PAAR-repeat protein 001292784 e4ku0D1 002987301 Q87L56_nD1 Q87L56 ARGB_VIBPA VP2758 argB Acetylglutamate kinase 2757 1-263 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 000010505 e1gs5A1 002987302 Q87PU8_nD2 Q87PU8 Q87PU8_VIBPA VP1403 Type VI secretion system contractile sheath large subunit 1403 366-485 f a.15 283 283.2 283.2.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like gpW/gp25-like gpW/gp25-like 001526185 e3j9gb1 002987303 Q87PU8_nD1 Q87PU8 Q87PU8_VIBPA VP1403 Type VI secretion system contractile sheath large subunit 1403 41-365 f a.17 2499 2499.2 2499.2.1 a/b three-layered sandwiches Subtilisin-like Domain III of tail sheath protein Gp18 Domain III of tail sheath protein Gp18 002074264 e5urw3J2 002987304 Q87NT0_nD1 Q87NT0 Q87NT0_VIBPA VP1788 1788 6-90 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002503 e1hlvA1 002987305 Q87KS1_nD3 Q87KS1 Q87KS1_VIBPA VP2905 Ion_trans domain-containing protein 2904 321-390 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002436450 e6hd5t1 002987306 Q87KS1_nD4 Q87KS1 Q87KS1_VIBPA VP2905 Ion_trans domain-containing protein 2904 456-590 f a.8 3839 3839.1 3839.1.1 alpha duplicates or obligate multimers Viral phosphoprotein dimerization domain Rabies virus phosphoprotein dimerization domain Rabies virus phosphoprotein dimerization domain 000175171 e3l32A1 002987307 Q87KS1_nD2 Q87KS1 Q87KS1_VIBPA VP2905 Ion_trans domain-containing protein 2904 31-50,116-320,391-450 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001108085 e4by6A1 002987308 Q87KS1_nD5 Q87KS1 Q87KS1_VIBPA VP2905 Ion_trans domain-containing protein 2904 591-785 f a.12 2485 2485.3 2485.3.1 a+b three layers Thioredoxin-like Major capsid protein gp5 Major capsid protein gp5 001002529 e1yueA2 002987309 Q87KS1_nD1 Q87KS1 Q87KS1_VIBPA VP2905 Ion_trans domain-containing protein 2904 1-30,51-115 f a.21 3456 3456.1 3456.1.1 extended segments NADH-quinone oxidoreductase subunit A NADH-quinone oxidoreductase subunit A NADH-quinone oxidoreductase subunit A 000185512 e3rkoA1 002987310 Q87FG9_nD1 Q87FG9 Q87FG9_VIBPA VPA1711 Carboxymuconolactone decarboxylase family protein 4789 31-245 f a.6 608 608.1 608.1.1 alpha arrays AhpD-like AhpD-like AhpD-like 001176331 e4g9qA2 002987311 Q87JH8_nD3 Q87JH8 Q87JH8_VIBPA VPA0275 3354 301-345 f a.12 4031 4031.1 4031.1.1 a+b three layers Nigritoxin middle domain Nigritoxin middle domain Nigritoxin middle domain 002133059 e5wk6J1 002987312 Q87JH8_nD1 Q87JH8 Q87JH8_VIBPA VPA0275 3354 51-140,246-295 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002717224 e6xl0T1 002987313 Q87JH8_nD2 Q87JH8 Q87JH8_VIBPA VPA0275 3354 141-245 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 001910311 e5fhyB2 002987314 Q87LN4_nD2 Q87LN4 Q87LN4_VIBPA VP2577 Anti-sigma-E factor RseA 2576 176-200 f a.11 807 807.1 807.1.1 a+b two layers Allophycocyanin linker chain (domain) Allophycocyanin linker chain (domain) Allophycocyanin linker chain (domain) 002558845 e6kgxdJ1 002987315 Q87LN4_nD1 Q87LN4 Q87LN4_VIBPA VP2577 Anti-sigma-E factor RseA 2576 6-70 f a.6 564 564.1 564.1.1 alpha arrays N-terminal, cytoplasmic domain of anti-sigma factors N-terminal, cytoplasmic domain of anti-sigma factors N-terminal, cytoplasmic domain of anti-sigma factors 002516761 e6in7A1 002987316 Q87KN0_nD1 Q87KN0 PLSB_VIBPA VP2947 plsB Glycerol-3-phosphate acyltransferase 2946 11-205 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 000010587 e1iuqA1 002987317 Q87KN0_nD2 Q87KN0 PLSB_VIBPA VP2947 plsB Glycerol-3-phosphate acyltransferase 2946 211-245 f a.17 7519 7519.1 7519.1.1 a/b three-layered sandwiches ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit 001886930 e5ik2O1 002987318 Q87KN0_nD4 Q87KN0 PLSB_VIBPA VP2947 plsB Glycerol-3-phosphate acyltransferase 2946 616-805 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002140759 e5w5aB1 002987319 Q87KN0_nD3 Q87KN0 PLSB_VIBPA VP2947 plsB Glycerol-3-phosphate acyltransferase 2946 246-435,461-615 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000358617 e3g73B1 002987320 Q87HJ4_nD2 Q87HJ4 Q87HJ4_VIBPA VPA0969 DUF1800 domain-containing protein 4048 36-65,91-105,357-385,421-520 f a.6 3144 3144.1 3144.1.1 alpha arrays PBS linker domain of phycobilisome linker polypeptide PBS linker domain of phycobilisome linker polypeptide PBS linker domain of phycobilisome linker polypeptide 002138717 e5y6pew1 002987321 Q87HJ4_nD1 Q87HJ4 Q87HJ4_VIBPA VPA0969 DUF1800 domain-containing protein 4048 66-75,106-195,261-340,402-420 f a.6 3144 3144.1 3144.1.1 alpha arrays PBS linker domain of phycobilisome linker polypeptide PBS linker domain of phycobilisome linker polypeptide PBS linker domain of phycobilisome linker polypeptide 002558844 e6kgxeD1 002987322 Q79YV8_nD4 Q79YV8 Q79YV8_VIBPA VP2251 2251 401-465 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002987323 Q79YV8_nD3 Q79YV8 Q79YV8_VIBPA VP2251 2251 301-375 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001314443 e4qhtC2 002987324 Q79YV8_nD2 Q79YV8 Q79YV8_VIBPA VP2251 2251 121-300 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002598028 e6lufB2 002987325 Q79YV8_nD1 Q79YV8 Q79YV8_VIBPA VP2251 2251 1-120 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001822144 e5ep0A2 002987326 Q87K48_nD1 Q87K48 Q87K48_VIBPA VPA0050 3129 1-120 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 002645133 e1xa8B1 002987327 Q87FU7_nD3 Q87FU7 Q87FU7_VIBPA VPA1581 4660 41-80,151-190 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002987328 Q87FU7_nD4 Q87FU7 Q87FU7_VIBPA VPA1581 4660 31-40,191-290 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001313622 e4tkoB1 002987329 Q87FU7_nD1 Q87FU7 Q87FU7_VIBPA VPA1581 4660 1-30 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001070260 e4l8jA3 002987330 Q87FU7_nD2 Q87FU7 Q87FU7_VIBPA VPA1581 4660 81-150 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001632108 e4dk0A2 002987331 Q87QE1_nD1 Q87QE1 Q87QE1_VIBPA VP1208 1208 11-75 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001267909 e3iwgA3 002987332 Q87QE1_nD2 Q87QE1 Q87QE1_VIBPA VP1208 1208 76-230 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001118250 e3ec4A1 002987333 Q87IQ4_nD1 Q87IQ4 Q87IQ4_VIBPA VPA0552 3631 6-69 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000023763 e2es2A1 002987334 Q87S25_nD2 Q87S25 HSCB_VIBPA VP0599 hscB Co-chaperone protein HscB homolog 599 76-170 f a.7 622 622.1 622.1.1 alpha bundles YvfG-like HSC20 (HSCB), C-terminal oligomerisation domain HSC20 (HSCB), C-terminal oligomerisation domain 000055281 e1fpoB2 002987335 Q87S25_nD1 Q87S25 HSCB_VIBPA VP0599 hscB Co-chaperone protein HscB homolog 599 1-75 f a.7 650 650.1 650.1.1 alpha bundles Chaperone J-domain Chaperone J-domain Chaperone J-domain 000054371 e1fpoB1 002987336 Q87H84_nD1 Q87H84 Q87H84_VIBPA VPA1081 Amino acid permease 4160 1-70 f a.7 3826 3826.1 3826.1.1 alpha bundles Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) 002546344 e6ahxA1 002987337 Q87P01_nD2 Q87P01 Q87P01_VIBPA VP1717 ABC transporter 1717 1-40,171-375 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002415225 e6hzmB1 002987338 Q87P01_nD1 Q87P01 Q87P01_VIBPA VP1717 ABC transporter 1717 46-170 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518824 e3cniA1 002987339 Q87P37_nD1 Q87P37 Q87P37_VIBPA VP1682 CesT family type III secretion system chaperone 1681 1-140 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 002171511 e5z38C1 002987340 Q87FN3_nD1 Q87FN3 Q87FN3_VIBPA VPA1646 4725 6-140 f a.17 7565 7565.1 7565.1.1 a/b three-layered sandwiches Resolvase-like Resolvase-like Resolvase-like 001031122 e4bqqA1 002987341 Q87FN3_nD2 Q87FN3 Q87FN3_VIBPA VPA1646 4725 156-215 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002575693 e6rwoA1 002987342 Q87R72_nD1 Q87R72 5DNU_VIBPA VP0926 5'-deoxynucleotidase VP0926 926 6-190 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 001919142 e5tk8A1 002987343 Q87H09_nD1 Q87H09 Q87H09_VIBPA VPA1156 4235 1-225 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009852 e1efvB1 002987344 Q87H39_nD1 Q87H39 Q87H39_VIBPA VPA1126 4205 6-535 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001174347 e3u9rB3 002987345 Q87KR0_nD1 Q87KR0 DCUP_VIBPA VP2916 hemE Uroporphyrinogen decarboxylase 2915 1-355 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001411801 e4wshA1 002987346 Q87KP2_nD1 Q87KP2 Q87KP2_VIBPA VP2935 2934 51-145 f a.11 304 304.9 304.9.1 a+b two layers Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD 002722991 e7dvqY1 002987347 Q87IJ5_nD2 Q87IJ5 ACKA2_VIBPA VPA0611 ackA2 Acetate kinase 2 3690 196-395 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000115586 e1x3mA2 002987348 Q87IJ5_nD1 Q87IJ5 ACKA2_VIBPA VPA0611 ackA2 Acetate kinase 2 3690 1-195 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001149669 e3slcA3 002987349 Q87JL1_nD2 Q87JL1 Q87JL1_VIBPA VPA0238 3317 241-370 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001265607 e2awnB5 002987350 Q87JL1_nD1 Q87JL1 Q87JL1_VIBPA VPA0238 3317 6-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001265582 e2it1A8 002987351 Q87HL6_nD1 Q87HL6 Q87HL6_VIBPA VPA0947 4026 6-100 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000360455 e3f72B1 002987352 Q87K40_nD1 Q87K40 Q87K40_VIBPA VPA0058 3137 16-45 f a.21 5074 5074.1 5074.1.1 extended segments Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits 002046538 e5b5nA1 002987353 Q87QC5_nD1 Q87QC5 Q87QC5_VIBPA VP1224 Multidrug resistance protein NorM 1224 6-230 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002473003 e6nc9A2 002987354 Q87QC5_nD2 Q87QC5 Q87QC5_VIBPA VP1224 Multidrug resistance protein NorM 1224 231-455 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002987355 Q87I49_nD1 Q87I49 Q87I49_VIBPA VPA0757 EamA family transporter 3836 1-290 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002987356 Q87S28_nD2 Q87S28 ISCS_VIBPA VP0596 iscS Cysteine desulfurase IscS 596 281-400 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001151913 e3bcbA3 002987357 Q87S28_nD1 Q87S28 ISCS_VIBPA VP0596 iscS Cysteine desulfurase IscS 596 6-300 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001192599 e3lvmA2 002987358 Q87H24_nD1 Q87H24 Q87H24_VIBPA VPA1141 4220 6-120 f a.6 608 608.1 608.1.1 alpha arrays AhpD-like AhpD-like AhpD-like 000049638 e2af7D1 002987359 Q87LV1_nD2 Q87LV1 PANC_VIBPA VP2507 panC Pantothenate synthetase 2507 181-280 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 001260422 e3q12A3 002987360 Q87LV1_nD1 Q87LV1 PANC_VIBPA VP2507 panC Pantothenate synthetase 2507 1-180 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001260421 e3q12A2 002987361 Q87RB4_nD1 Q87RB4 Q87RB4_VIBPA VP0883 883 6-150 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 002466957 e6qsrB1 002987362 Q87HN8_nD1 Q87HN8 Q87HN8_VIBPA VPA0925 4004 11-235 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002813253 e7b6wAAA2 002987363 Q87HN8_nD2 Q87HN8 Q87HN8_VIBPA VPA0925 4004 236-410 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002987364 P0A498_nD1 P0A498 RL36_VIBPA VP0278 rpmJ 50S ribosomal protein L36 278 1-35 f a.19 919 919.1 919.1.1 few secondary structure elements Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 002392996 e6hixA91 002987365 Q87JK8_nD1 Q87JK8 Q87JK8_VIBPA VPA0241 Multidrug transporter 3320 1-300 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002987366 Q87L02_nD1 Q87L02 Q87L02_VIBPA VP2822 queG Epoxyqueuosine reductase 2821 6-315 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 001693437 e5d6sD1 002987367 Q87L02_nD2 Q87L02 Q87L02_VIBPA VP2822 queG Epoxyqueuosine reductase 2821 316-355 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001889998 e5d08A3 002987368 Q87JE7_nD1 Q87JE7 Q87JE7_VIBPA VPA0306 3385 21-155 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002073620 e5h2aA1 002987369 Q87SX1_nD1 Q87SX1 Q87SX1_VIBPA VP0301 301 6-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002987370 Q87SD8_nD1 Q87SD8 Q87SD8_VIBPA VP0486 486 36-145 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001018827 e4hh2D3 002987371 Q87SD8_nD2 Q87SD8 Q87SD8_VIBPA VP0486 486 151-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001018827 e4hh2D3 002987372 Q87SD8_nD3 Q87SD8 Q87SD8_VIBPA VP0486 486 266-410 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002987373 Q87SD8_nD4 Q87SD8 Q87SD8_VIBPA VP0486 486 411-580 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002987374 Q87KP8_nD1 Q87KP8 Q87KP8_VIBPA VP2928 secE Protein translocase subunit SecE 2927 16-65 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 002151959 e5n5eE1 002987375 Q87KP8_nD2 Q87KP8 Q87KP8_VIBPA VP2928 secE Protein translocase subunit SecE 2927 66-120 f a.21 5027 5027.1 5027.1.1 extended segments Preprotein translocase SecE subunit Preprotein translocase SecE subunit Preprotein translocase SecE subunit 001714788 e5awwE1 002987376 Q87SD9_nD1 Q87SD9 Q87SD9_VIBPA VP0485 Radical SAM core domain-containing protein 485 1-315 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002448552 e6iadA1 002987377 Q87N53_nD1 Q87N53 Q87N53_VIBPA VP2022 2022 1-235 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002323855 e5mlzA1 002987378 Q87SP9_nD1 Q87SP9 373 71-125 f 002987379 Q87NT8_nD1 Q87NT8 Q87NT8_VIBPA VP1780 1780 6-35 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002632561 e6pqvY1 002987380 Q87JH6_nD3 Q87JH6 Q87JH6_VIBPA VPA0277 RCK N-terminal domain-containing protein 3356 526-595 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 001155182 e3u6nA6 002987381 Q87JH6_nD2 Q87JH6 Q87JH6_VIBPA VPA0277 RCK N-terminal domain-containing protein 3356 396-525 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001731289 e4xqcA1 002987382 Q87JH6_nD1 Q87JH6 Q87JH6_VIBPA VPA0277 RCK N-terminal domain-containing protein 3356 6-390 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001422103 e4czbB1 002987383 Q87N82_nD1 Q87N82 Q87N82_VIBPA VP1993 1993 1-190 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000389320 e3mgkB1 002987384 Q87N82_nD2 Q87N82 Q87N82_VIBPA VP1993 1993 196-250 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670618 e6swiA1 002987385 Q87N82_nD3 Q87N82 Q87N82_VIBPA VP1993 1993 251-304 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002987386 Q87Q18_nD1 Q87Q18 Q87Q18_VIBPA VP1332 1332 26-135,266-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002987387 Q87Q18_nD2 Q87Q18 Q87Q18_VIBPA VP1332 1332 136-265,331-355 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002662555 e4wrnA5 002987388 Q87KV2_nD3 Q87KV2 Q87KV2_VIBPA VP2873 fumC Fumarate hydratase class II 2872 401-455 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 000181629 e3r6qA2 002987389 Q87KV2_nD1 Q87KV2 Q87KV2_VIBPA VP2873 fumC Fumarate hydratase class II 2872 6-130 f a.6 4952 4952.1 4952.1.1 alpha arrays L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like 000133644 e1yfmA3 002987390 Q87KV2_nD2 Q87KV2 Q87KV2_VIBPA VP2873 fumC Fumarate hydratase class II 2872 131-400 f a.6 602 602.1 602.1.1 alpha arrays L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like 001129103 e3gtdB3 002987391 Q87NP6_nD1 Q87NP6 Q87NP6_VIBPA VP1822 DUF3265 domain-containing protein 1822 1-30 f a.21 5025 5025.1 5025.1.1 extended segments PetL subunit of the cytochrome b6f complex PetL subunit of the cytochrome b6f complex PetL subunit of the cytochrome b6f complex 000004729 e2e74E1 002987392 Q87IJ0_nD1 Q87IJ0 Q87IJ0_VIBPA VPA0616 3695 6-275 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000135618 e3i47A1 002987393 Q87QH0_nD1 Q87QH0 Q87QH0_VIBPA VP1179 1179 6-185 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 000163494 e2jg6A1 002987394 Q87MZ5_nD1 Q87MZ5 Y2081_VIBPA VP2081 UPF0208 membrane protein VP2081 2081 6-95,126-135 f a.14 3712 3712.1 3712.1.1 a+b complex topology Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 002075294 e5n9jV1 002987395 Q87K64_nD1 Q87K64 Q87K64_VIBPA VPA0034 3113 11-120 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001510410 e3neuA1 002987396 Q87PY3_nD2 Q87PY3 Q87PY3_VIBPA VP1367 1367 91-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002987397 Q87PY3_nD1 Q87PY3 Q87PY3_VIBPA VP1367 1367 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001663571 e4x6gD2 002987398 Q87GI0_nD1 Q87GI0 Q87GI0_VIBPA VPA1336 Tub domain-containing protein 4415 221-245 f a.11 6041 6041.1 6041.1.1 a+b two layers DUF1107-like DUF1107-like DUF1107-like 000184678 e2jroA1 002987399 Q87S83_nD1 Q87S83 Q87S83_VIBPA VP0541 DUF2799 domain-containing protein 541 21-110 f a.7 6028 6028.1 6028.1.1 alpha bundles Ribosome modulation factor Ribosome modulation factor Ribosome modulation factor 002403868 e6h58vv1 002987400 P46233_nD2 P46233 MOTY_VIBPA VP2111 motY Sodium-type flagellar protein MotY 2111 176-290 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001086999 e4g4vA1 002987401 P46233_nD1 P46233 MOTY_VIBPA VP2111 motY Sodium-type flagellar protein MotY 2111 21-175 f a.11 3659 3659.1 3659.1.1 a+b two layers MotY N-terminal domain MotY N-terminal domain MotY N-terminal domain 001002452 e2zf8A1 002987402 Q87SP8_nD2 Q87SP8 Q87SP8_VIBPA VP0374 SIMPL domain-containing protein 374 51-165 f a.11 304 304.133 304.133.1 a+b two layers Alpha-beta plaits 26 kDa periplasmic immunogenic protein 26 kDa periplasmic immunogenic protein 002648135 e7c51A1 002987403 Q87SP8_nD1 Q87SP8 Q87SP8_VIBPA VP0374 SIMPL domain-containing protein 374 6-30 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001411682 e4rnhA2 002987404 Q87SP8_nD3 Q87SP8 Q87SP8_VIBPA VP0374 SIMPL domain-containing protein 374 36-50,166-235 f a.11 304 304.133 304.133.1 a+b two layers Alpha-beta plaits 26 kDa periplasmic immunogenic protein 26 kDa periplasmic immunogenic protein 002644666 e7c50A2 002987405 Q87JJ5_nD2 Q87JJ5 Q87JJ5_VIBPA VPA0254 L-serine dehydratase 3333 166-455 f a.6 4021 4021.1 4021.1.1 alpha arrays alpha-helical domain in 2-methylcitrate dehydratase PrpD alpha-helical domain in 2-methylcitrate dehydratase PrpD alpha-helical domain in 2-methylcitrate dehydratase PrpD 001411398 e4rqoB2 002987406 Q87JJ5_nD1 Q87JJ5 Q87JJ5_VIBPA VPA0254 L-serine dehydratase 3333 6-155 f a.11 298 298.3 298.3.1 a+b two layers FwdE/GAPDH domain-like Serine dehydratase beta chain-like Serine dehydratase beta chain-like 001411397 e4rqoB1 002987407 Q87QN7_nD1 Q87QN7 Q87QN7_VIBPA VP1112 bioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1112 26-330 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001949149 e5uc7A1 002987408 Q87QN7_nD2 Q87QN7 Q87QN7_VIBPA VP1112 bioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1112 331-425 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001949150 e5uc7A2 002987409 Q87NK1_nD1 Q87NK1 Q87NK1_VIBPA VP1867 HD domain-containing protein 1867 6-195 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000137236 e3kh1A1 002987410 Q87TQ3_nD1 Q87TQ3 Q87TQ3_VIBPA VP0016 GreA_GreB domain-containing protein 16 26-120 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 002126108 e3bmbB1 002987411 Q87TA3_nD2 Q87TA3 Q87TA3_VIBPA VP0167 DUF3450 domain-containing protein 167 176-240 f a.15 3409 3409.1 3409.1.1 a+b duplicates or obligate multimers Vacuolar protein sorting-associated protein 30 BARA domain Vacuolar protein sorting-associated protein 30 BARA domain Vacuolar protein sorting-associated protein 30 BARA domain 002074717 e5dfzD1 002987412 Q87TA3_nD1 Q87TA3 Q87TA3_VIBPA VP0167 DUF3450 domain-containing protein 167 31-175 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002987413 Q87M12_nD2 Q87M12 Q87M12_VIBPA VP2446 2446 241-415 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002987414 Q87M12_nD1 Q87M12 Q87M12_VIBPA VP2446 2446 6-240 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002753462 e7dwmA2 002987415 Q87M12_nD3 Q87M12 Q87M12_VIBPA VP2446 2446 416-675 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002034028 e5m1tA1 002987416 Q87N87_nD3 Q87N87 Q87N87_VIBPA VP1988 1988 166-255 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002496432 e6gz0A2 002987417 Q87N87_nD1 Q87N87 Q87N87_VIBPA VP1988 1988 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002987418 Q87N87_nD2 Q87N87 Q87N87_VIBPA VP1988 1988 91-165,256-285 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002987419 Q87NY3_nD1 Q87NY3 Q87NY3_VIBPA VP1735 Sensor protein QseC 1735 16-185 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002596952 e6py3B2 002987420 Q87NY3_nD2 Q87NY3 Q87NY3_VIBPA VP1735 Sensor protein QseC 1735 191-245 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002987421 Q87NY3_nD3 Q87NY3 Q87NY3_VIBPA VP1735 Sensor protein QseC 1735 246-325 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002625009 e6pajB2 002987422 Q87NY3_nD4 Q87NY3 Q87NY3_VIBPA VP1735 Sensor protein QseC 1735 331-475 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001290979 e4q20A1 002987423 Q87SF7_nD3 Q87SF7 SECA_VIBPA VP0467 secA Protein translocase subunit SecA 467 836-860 f a.10 3281 3281.1 3281.1.1 alpha complex topology Sodium/proton antiporter subunits-like Sodium/proton antiporter subunits-like NADH-quinone oxidoreductase subunit L (NuoL)-related 002580625 e6l7oB1 002987424 Q87SF7_nD2 Q87SF7 SECA_VIBPA VP0467 secA Protein translocase subunit SecA 467 16-225,376-595,621-830 f a.10 161 161.1 161.1.1 alpha complex topology Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA 001710539 e2fshB2 002987425 Q87SF7_nD1 Q87SF7 SECA_VIBPA VP0467 secA Protein translocase subunit SecA 467 231-370 f a.6 570 570.1 570.1.1 alpha arrays Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA 001392920 e2ipcA4 002987426 Q87JV4_nD1 Q87JV4 Q87JV4_VIBPA VPA0144 3223 1-100,301-330 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 002408127 e5z20F1 002987427 Q87JV4_nD2 Q87JV4 Q87JV4_VIBPA VPA0144 3223 101-300 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002395127 e6abjB1 002987428 Q87NG4_nD4 Q87NG4 Q87NG4_VIBPA VP1904 1904 356-615 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002987429 Q87NG4_nD3 Q87NG4 Q87NG4_VIBPA VP1904 1904 291-350 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002987430 Q87NG4_nD1 Q87NG4 Q87NG4_VIBPA VP1904 1904 1-30,271-290 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002987431 Q87NG4_nD2 Q87NG4 Q87NG4_VIBPA VP1904 1904 31-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002472915 e6d8vA1 002987432 Q87QZ1_nD3 Q87QZ1 Q87QZ1_VIBPA VP1007 dinG ATP-dependent DNA helicase DinG 1007 486-610,631-690 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002429155 e6fwrA1 002987433 Q87QZ1_nD1 Q87QZ1 Q87QZ1_VIBPA VP1007 dinG ATP-dependent DNA helicase DinG 1007 6-260,436-485 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002429156 e6fwrA2 002987434 Q87QZ1_nD2 Q87QZ1 Q87QZ1_VIBPA VP1007 dinG ATP-dependent DNA helicase DinG 1007 261-435 f a.11 3636 3636.1 3636.1.1 a+b two layers XPD arch domain XPD arch domain XPD arch domain 002429157 e6fwrA3 002987435 Q87GH1_nD1 Q87GH1 Q87GH1_VIBPA VPA1345 Chaperone 4424 26-80,346-383 f a.7 3799 3799.1 3799.1.1 alpha bundles SabA N-terminal extracellular adhesion domain SabA N-terminal extracellular adhesion domain SabA N-terminal extracellular adhesion domain 002562099 e6qd6G1 002987436 Q87GH1_nD2 Q87GH1 Q87GH1_VIBPA VPA1345 Chaperone 4424 81-345 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000004814 e1or7A2 002987437 Q87Q03_nD2 Q87Q03 Q87Q03_VIBPA VP1347 1347 26-65,191-290,506-535 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001019356 e1jetA3 002987438 Q87Q03_nD1 Q87Q03 Q87Q03_VIBPA VP1347 1347 66-190 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002412748 e6dqqA3 002987439 Q87Q03_nD3 Q87Q03 Q87Q03_VIBPA VP1347 1347 291-505 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001019357 e1jetA4 002987440 Q87FK0_nD1 Q87FK0 Q87FK0_VIBPA VPA1679 Glutathione peroxidase 4758 12-80 f a.8 573 573.1 573.1.1 alpha duplicates or obligate multimers Soluble domain of poliovirus core protein 3a Soluble domain of poliovirus core protein 3a Soluble domain of poliovirus core protein 3a 002516739 e6hlwD1 002987441 Q87GP7_nD2 Q87GP7 Q87GP7_VIBPA VPA1268 Alpha/beta hydrolase 4347 101-135 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002068819 e4owiB1 002987442 Q87GP7_nD1 Q87GP7 Q87GP7_VIBPA VPA1268 Alpha/beta hydrolase 4347 6-80 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000281323 e1yx3A1 002987443 Q87GP7_nD3 Q87GP7 Q87GP7_VIBPA VPA1268 Alpha/beta hydrolase 4347 171-220 f 002987444 Q87IR0_nD1 Q87IR0 Q87IR0_VIBPA VPA0546 3625 31-210 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002803452 e7pqfA1 002987445 Q87PQ9_nD1 Q87PQ9 Q87PQ9_VIBPA VP1442 Exonuclease domain-containing protein 1442 6-175 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001318582 e4qozE2 002987446 Q87T92_nD1 Q87T92 PYRE_VIBPA VP0178 pyrE Orotate phosphoribosyltransferase 178 1-213 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 000010658 e1lh0A1 002987447 Q87MI4_nD1 Q87MI4 Q87MI4_VIBPA VP2271 DUF2897 family protein 2271 6-30 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002987448 Q87I70_nD4 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 486-520 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002821689 e7rz5A1 002987449 Q87I70_nD3 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 356-440 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001520346 e4f3pA1 002987450 Q87I70_nD1 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 26-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001519490 e1ah5A3 002987451 Q87I70_nD7 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 736-890 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223387 e3crlB3 002987452 Q87I70_nD9 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 976-1115 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010042 e2ayxA1 002987453 Q87I70_nD10 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 1116-1215 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 001555866 e4pacA1 002987454 Q87I70_nD6 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 666-735 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002708987 e6lgqC1 002987455 Q87I70_nD5 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 531-645 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001780568 e5hwwA1 002987456 Q87I70_nD8 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 896-975 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 001879403 e5ixmH1 002987457 Q87I70_nD2 Q87I70 Q87I70_VIBPA VPA0736 Phosphorelay protein LuxU 3815 261-355,441-485 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002987458 Q87GJ7_nD1 Q87GJ7 Q87GJ7_VIBPA VPA1320 4398 16-45 f a.21 5074 5074.1 5074.1.1 extended segments Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits 002172704 e6et5Z1 002987459 Q87IP6_nD1 Q87IP6 Q87IP6_VIBPA VPA0560 3639 1-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002417768 e5gkoA1 002987460 Q87IR4_nD1 Q87IR4 Q87IR4_VIBPA VPA0542 Cytochrome oxidase biogenesis cluster protein 3621 41-175 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002142613 e5xbrA1 002987461 Q87LL8_nD1 Q87LL8 Q87LL8_VIBPA VP2593 D-3-phosphoglycerate dehydrogenase 2592 6-110,296-330 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 000136946 e3k5pA3 002987462 Q87LL8_nD2 Q87LL8 Q87LL8_VIBPA VP2593 D-3-phosphoglycerate dehydrogenase 2592 111-295 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000136945 e3k5pA2 002987463 Q87LL8_nD3 Q87LL8 Q87LL8_VIBPA VP2593 D-3-phosphoglycerate dehydrogenase 2592 331-410 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000136944 e3k5pA1 002987464 Q87H98_nD1 Q87H98 Q87H98_VIBPA VPA1067 4146 16-418 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002705927 e7kgvB1 002987465 Q87PT3_nD1 Q87PT3 Q87PT3_VIBPA VP1418 Archease domain-containing protein 1418 66-100 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002526305 e6a4cA2 002987466 Q87Q55_nD1 Q87Q55 Q87Q55_VIBPA VP1295 Phosphoribosylglycinamide formyltransferase 1295 46-250 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002142446 e6ewzA1 002987467 Q87R79_nD3 Q87R79 CLPX_VIBPA VP0918 clpX ATP-dependent Clp protease ATP-binding subunit ClpX 918 321-415 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002570854 e6vfxC1 002987468 Q87R79_nD1 Q87R79 CLPX_VIBPA VP0918 clpX ATP-dependent Clp protease ATP-binding subunit ClpX 918 11-60 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 000089702 e1ovxB1 002987469 Q87R79_nD2 Q87R79 CLPX_VIBPA VP0918 clpX ATP-dependent Clp protease ATP-binding subunit ClpX 918 61-320 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002592124 e6pp7D1 002987470 Q87M73_nD1 Q87M73 Q87M73_VIBPA VP2385 2385 6-265 f a.10 5048 5048.1 5048.1.1 alpha complex topology Aquaporin-like Aquaporin-like Aquaporin-like 000004909 e1fx8A1 002987471 Q87Q73_nD1 Q87Q73 Q87Q73_VIBPA VP1277 1277 6-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001489280 e4u0vB1 002987472 Q87Q73_nD2 Q87Q73 Q87Q73_VIBPA VP1277 1277 71-235 f a.11 814 814.1 814.1.1 a+b two layers Chorismate lyase Chorismate lyase Chorismate lyase 001841093 e4zsiA1 002987473 Q87Q45_nD1 Q87Q45 COBS_VIBPA VP1305 cobS Adenosylcobinamide-GDP ribazoletransferase 1305 16-260 f a.10 5053 5053.1 5053.1.1 alpha complex topology Clc chloride channel Clc chloride channel Clc chloride channel 002478109 e6qvcA1 002987474 Q87LD4_nD1 Q87LD4 Q87LD4_VIBPA VP2678 2677 1-100,291-320 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 001931379 e5tx7A2 002987475 Q87LD4_nD2 Q87LD4 Q87LD4_VIBPA VP2678 2677 101-290 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001931378 e5tx7A1 002987476 Q87J72_nD3 Q87J72 Q87J72_VIBPA VPA0381 3460 281-330 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001762220 e3w6vA1 002987477 Q87J72_nD1 Q87J72 Q87J72_VIBPA VPA0381 3460 6-205 f a.14 873 873.1 873.1.1 a+b complex topology H-NOX domain H-NOX domain H-NOX domain 000137765 e3iqbA1 002987478 Q87J72_nD2 Q87J72 Q87J72_VIBPA VPA0381 3460 211-280 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001761263 e3mn2A1 002987479 Q87H13_nD3 Q87H13 Q87H13_VIBPA VPA1152 4231 471-635 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002088394 e5msdA4 002987480 Q87H13_nD1 Q87H13 Q87H13_VIBPA VPA1152 4231 1-190 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002088405 e5mstB3 002987481 Q87H13_nD2 Q87H13 Q87H13_VIBPA VPA1152 4231 191-470 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002987482 Q87GG1_nD3 Q87GG1 Q87GG1_VIBPA VPA1355 4434 336-435 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001016744 e3mydA4 002987483 Q87GG1_nD4 Q87GG1 Q87GG1_VIBPA VPA1355 4434 436-525 f a.6 3254 3254.1 3254.1.1 alpha arrays helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA 002723630 e7awaA2 002987484 Q87GG1_nD1 Q87GG1 Q87GG1_VIBPA VPA1355 4434 31-255 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 001019380 e1xwmA3 002987485 Q87GG1_nD2 Q87GG1 Q87GG1_VIBPA VPA1355 4434 271-320 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002462606 e4mrpA2 002987486 Q87GG1_nD5 Q87GG1 Q87GG1_VIBPA VPA1355 4434 531-625 f a.17 3255 3255.1 3255.1.1 a/b three-layered sandwiches a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA 002325635 e6ch1A4 002987487 Q87SQ3_nD2 Q87SQ3 MTLD_VIBPA VP0369 mtlD Mannitol-1-phosphate 5-dehydrogenase 369 206-380 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 001155153 e3h2zA3 002987488 Q87SQ3_nD1 Q87SQ3 MTLD_VIBPA VP0369 mtlD Mannitol-1-phosphate 5-dehydrogenase 369 1-205 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001155154 e3h2zA4 002987489 Q87QQ1_nD2 Q87QQ1 Q87QQ1_VIBPA VP1098 1098 171-440 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 000342886 e2uyrX1 002987490 Q87QQ1_nD1 Q87QQ1 Q87QQ1_VIBPA VP1098 1098 21-165 f a.3 11 11.8 11.8.1 beta sandwiches Immunoglobulin-like beta-sandwich Osmotin-like Osmotin-like 002832032 e7ekzA1 002987491 Q87L57_nD1 Q87L57 Q87L57_VIBPA VP2755 DUF3624 domain-containing protein 2754 1-80 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002512978 e6r2gA1 002987492 Q87PA5_nD3 Q87PA5 RSMF_VIBPA VP1612 rsmF Ribosomal RNA small subunit methyltransferase F 1612 406-478 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 001179759 e2frxA4 002987493 Q87PA5_nD1 Q87PA5 RSMF_VIBPA VP1612 rsmF Ribosomal RNA small subunit methyltransferase F 1612 1-315 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001179757 e2frxA2 002987494 Q87PA5_nD2 Q87PA5 RSMF_VIBPA VP1612 rsmF Ribosomal RNA small subunit methyltransferase F 1612 321-405 f a.11 243 243.6 243.6.1 a+b two layers Cystatin-like Pre-PUA domain Pre-PUA domain 001179758 e2frxA3 002987495 Q87P48_nD1 Q87P48 Q87P48_VIBPA VP1670 1670 326-415 f a.11 3186 3186.1 3186.1.1 a+b two layers C-terminal domain of FliK C-terminal domain of FliK C-terminal domain of FliK 001718745 e5cukA1 002987496 Q87NQ1_nD3 Q87NQ1 Q87NQ1_VIBPA VP1817 Permease 1817 61-160 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002576339 e6qpqC1 002987497 Q87NQ1_nD1 Q87NQ1 Q87NQ1_VIBPA VP1817 Permease 1817 1-30 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002987498 Q87NQ1_nD2 Q87NQ1 Q87NQ1_VIBPA VP1817 Permease 1817 31-60 f a.6 1073 1073.1 1073.1.1 alpha arrays Mitochondrial calcium uniporter (MCU) Mitochondrial calcium uniporter (MCU) Mitochondrial calcium uniporter (MCU) 001830972 e5id3A1 002987499 Q87KK7_nD1 Q87KK7 Q87KK7_VIBPA VP2970 Glyceraldehyde-3-phosphate dehydrogenase 2969 1-150,316-333 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000144085 e3sthA2 002987500 Q87KK7_nD2 Q87KK7 Q87KK7_VIBPA VP2970 Glyceraldehyde-3-phosphate dehydrogenase 2969 151-185,206-315 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000077172 e1hdgQ1 002987501 Q87HB3_nD1 Q87HB3 Q87HB3_VIBPA VPA1052 4131 6-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002574266 e6nsmA1 002987502 Q87HB3_nD2 Q87HB3 Q87HB3_VIBPA VPA1052 4131 71-190 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000349953 e3e7qB2 002987503 Q87RI8_nD1 Q87RI8 Q87RI8_VIBPA VP0806 Thioredoxin domain-containing protein 806 1-115 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001394877 e3qdnA2 002987504 Q87RI8_nD2 Q87RI8 Q87RI8_VIBPA VP0806 Thioredoxin domain-containing protein 806 116-280 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001290102 e2r5sA1 002987505 Q87FU9_nD1 Q87FU9 Q87FU9_VIBPA VPA1579 4658 26-260,291-520 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 001841134 e5azpB1 002987506 Q87LM4_nD1 Q87LM4 Q87LM4_VIBPA VP2587 2586 1-390 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002773986 e6pvgA1 002987507 Q87H19_nD1 Q87H19 Q87H19_VIBPA VPA1146 SAM-dependent methyltransferase 4225 6-200 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000139262 e3lccA1 002987508 Q87SV5_nD1 Q87SV5 Q87SV5_VIBPA VP0317 Thiamine transport system permease protein ThiP 317 6-525 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001723418 e4xigN1 002987509 Q87HA4_nD1 Q87HA4 Q87HA4_VIBPA VPA1061 4140 21-305 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001562216 e4zv9A1 002987510 Q87L27_nD1 Q87L27 Q87L27_VIBPA VP2789 TIGR02444 family protein 2788 11-150 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000004675 e1k4tA5 002987511 Q87JR6_nD2 Q87JR6 Q87JR6_VIBPA VPA0182 histidine kinase 3261 6-25,271-295 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002987512 Q87JR6_nD5 Q87JR6 Q87JR6_VIBPA VPA0182 histidine kinase 3261 536-685 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001888779 e5idjA1 002987513 Q87JR6_nD1 Q87JR6 Q87JR6_VIBPA VPA0182 histidine kinase 3261 26-270 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002987514 Q87JR6_nD3 Q87JR6 Q87JR6_VIBPA VPA0182 histidine kinase 3261 296-465 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002721694 e7a6pA1 002987515 Q87JR6_nD4 Q87JR6 Q87JR6_VIBPA VPA0182 histidine kinase 3261 466-535 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002987516 Q87NY2_nD2 Q87NY2 Q87NY2_VIBPA VP1736 Sulfatase domain-containing protein 1736 236-645 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 000175457 e3lxqA1 002987517 Q87NY2_nD1 Q87NY2 Q87NY2_VIBPA VP1736 Sulfatase domain-containing protein 1736 11-235 f a.7 1151 1151.1 1151.1.1 alpha bundles Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A 002036575 e5fgnA1 002987518 Q87T82_nD1 Q87T82 Q87T82_VIBPA VP0188 50S ribosomal protein L33 188 51-155 f a.11 3784 3784.1 3784.1.1 a+b two layers Putative lipoprotein CPF_1278-related Putative lipoprotein CPF_1278-related Putative lipoprotein CPF_1278-related 001117595 e2mctA1 002987519 Q87TG5_nD1 Q87TG5 Q87TG5_VIBPA VP0104 Delta-aminolevulinic acid dehydratase 104 1-10,31-353 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000400336 e3obkD1 002987520 Q87MD4_nD1 Q87MD4 TRUC_VIBPA VP2322 truC tRNA pseudouridine synthase C 2322 1-245 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 002774629 e6yxyEC1 002987521 Q87M27_nD1 Q87M27 Q87M27_VIBPA VP2431 Phosphoserine phosphatase 2431 31-100 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001824707 e5is2A3 002987522 Q87M27_nD2 Q87M27 Q87M27_VIBPA VP2431 Phosphoserine phosphatase 2431 101-325 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001546123 e3n28A1 002987523 Q87JY5_nD1 Q87JY5 Q87JY5_VIBPA VPA0113 Lipoprotein 3192 61-145 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 000433153 e3sxkA1 002987524 Q87MK0_nD1 Q87MK0 Q87MK0_VIBPA VP2235 flhA Flagellar biosynthesis protein FlhA 2235 21-330 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002145206 e4q4hB3 002987525 Q87MK0_nD2 Q87MK0 Q87MK0_VIBPA VP2235 flhA Flagellar biosynthesis protein FlhA 2235 356-440,486-505 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002755331 e7amyA2 002987526 Q87MK0_nD5 Q87MK0 Q87MK0_VIBPA VP2235 flhA Flagellar biosynthesis protein FlhA 2235 596-699 f a.17 3255 3255.1 3255.1.1 a/b three-layered sandwiches a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA 001138613 e3mixA3 002987527 Q87MK0_nD3 Q87MK0 Q87MK0_VIBPA VP2235 flhA Flagellar biosynthesis protein FlhA 2235 441-485 f a.11 3253 3253.1 3253.1.1 a+b two layers ferredoxin-like domain in flagellar biosynthesis protein flhA ferredoxin-like domain in flagellar biosynthesis protein flhA ferredoxin-like domain in flagellar biosynthesis protein flhA 002755333 e7amyA4 002987528 Q87MK0_nD4 Q87MK0 Q87MK0_VIBPA VP2235 flhA Flagellar biosynthesis protein FlhA 2235 506-595 f a.6 3254 3254.1 3254.1.1 alpha arrays helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA 001138612 e3mixA2 002987529 Q87QF2_nD1 Q87QF2 Q87QF2_VIBPA VP1197 TVP38/TMEM64 family membrane protein 1197 31-210 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 000869562 e4huqS1 002987530 Q87SL3_nD1 Q87SL3 PLSY_VIBPA VP0410 plsY Glycerol-3-phosphate acyltransferase 410 6-195 f a.7 1197 1197.1 1197.1.1 alpha bundles Integral membrane glycerol 3-phosphate acyltransferase PlsY Integral membrane glycerol 3-phosphate acyltransferase PlsY Integral membrane glycerol 3-phosphate acyltransferase PlsY 002324027 e5xj6A1 002987531 Q87GZ8_nD1 Q87GZ8 Q87GZ8_VIBPA VPA1167 Tellurium resistance protein 4246 6-315 f a.9 109 109.37 109.37.1 alpha superhelices Repetitive alpha hairpins Anion channel SLAC1-related Anion channel SLAC1-related 001505863 e3m73A1 002987532 Q87M98_nD1 Q87M98 Q87M98_VIBPA VP2359 DUF4397 domain-containing protein 2359 6-140 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002803315 e7pmyA3 002987533 Q87RR8_nD1 Q87RR8 Q87RR8_VIBPA VP0709 709 6-50 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002647093 e7ce1K1 002987534 Q87RR8_nD2 Q87RR8 Q87RR8_VIBPA VP0709 709 51-155,281-310 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002066778 e4xxhA1 002987535 Q87RR8_nD3 Q87RR8 Q87RR8_VIBPA VP0709 709 156-280 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002391036 e5yszA3 002987536 Q87QU7_nD3 Q87QU7 RUVB_VIBPA VP1052 ruvB Holliday junction ATP-dependent DNA helicase RuvB 1052 261-330 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002137972 e6blbA2 002987537 Q87QU7_nD2 Q87QU7 RUVB_VIBPA VP1052 ruvB Holliday junction ATP-dependent DNA helicase RuvB 1052 186-260 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002137971 e6blbA1 002987538 Q87QU7_nD1 Q87QU7 RUVB_VIBPA VP1052 ruvB Holliday junction ATP-dependent DNA helicase RuvB 1052 16-185 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002137973 e6blbA3 002987539 Q87S87_nD1 Q87S87 ISPH_VIBPA VP0537 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 537 1-95 f a.17 7588 7588.1 7588.1.1 a/b three-layered sandwiches NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase 001035435 e3uv6B1 002987540 Q87S87_nD2 Q87S87 ISPH_VIBPA VP0537 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 537 96-200 f a.17 7588 7588.1 7588.1.1 a/b three-layered sandwiches NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase 001035436 e3uv6B2 002987541 Q87S87_nD3 Q87S87 ISPH_VIBPA VP0537 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 537 201-310 f a.17 7588 7588.1 7588.1.1 a/b three-layered sandwiches NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase 001035437 e3uv6B3 002987542 Q87LC2_nD1 Q87LC2 Q87LC2_VIBPA VP2690 Cell shape-determining protein MreC 2689 36-60 f a.7 3755 3755.4 3755.4.1 alpha bundles YscO-like Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 002512795 e6e7eA1 002987543 Q87LC2_nD2 Q87LC2 Q87LC2_VIBPA VP2690 Cell shape-determining protein MreC 2689 61-280 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001147765 e2j5uA1 002987544 Q87T97_nD1 Q87T97 Q87T97_VIBPA VP0173 173 1-275 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002987545 Q87QU1_nD1 Q87QU1 Q87QU1_VIBPA VP1058 tolR Tol-Pal system protein TolR 1058 46-145 f a.18 2484 2484.6 2484.6.1 mixed a+b and a/b Ribonuclease H-like Periplasmic domain of ExbD/TolR Periplasmic domain of ExbD/TolR 001685126 e5by4A1 002987546 Q87MY8_nD1 Q87MY8 Q87MY8_VIBPA VP2088 2088 1-320 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002987547 Q87LV8_nD1 Q87LV8 Q87LV8_VIBPA VP2500 dksA RNA polymerase-binding transcription factor DksA 2500 6-148 f a.7 192 192.10 192.10.1 alpha bundles Long alpha-hairpin DnaK suppressor protein DksA, alpha-hairpin domain DnaK suppressor protein DksA, alpha-hairpin domain 000060641 e1tjlB1 002987548 Q87FK9_nD1 Q87FK9 Q87FK9_VIBPA VPA1670 4749 6-345,376-663 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001118088 e4c1kE1 002987549 Q87P57_nD1 Q87P57 Q87P57_VIBPA VP1661 1661 1-130 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002469865 e6iufA1 002987550 Q87SF6_nD1 Q87SF6 Q87SF6_VIBPA VP0468 468 1-130 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 001497685 e4v14A1 002987551 Q87Q43_nD1 Q87Q43 Q87Q43_VIBPA VP1307 1307 1-204 f a.17 7525 7525.1 7525.1.1 a/b three-layered sandwiches Phosphoglycerate mutase-like Phosphoglycerate mutase-like Phosphoglycerate mutase-like 000364608 e3hjgB1 002987552 Q87G91_nD1 Q87G91 Q87G91_VIBPA VPA1426 Lipoprotein 4505 41-240 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001113196 e3wg5B1 002987553 Q87ND7_nD1 Q87ND7 Q87ND7_VIBPA VP1931 1931 6-30,56-230 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001182411 e2y4uA4 002987554 Q87K79_nD1 Q87K79 Q87K79_VIBPA VPA0019 Beta-lactamase 3098 36-445 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001907333 e5ldvA1 002987555 Q87ME5_nD6 Q87ME5 Q87ME5_VIBPA VP2310 bamA Outer membrane protein assembly factor BamA 2310 426-804 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001788077 e5d0oA5 002987556 Q87ME5_nD1 Q87ME5 Q87ME5_VIBPA VP2310 bamA Outer membrane protein assembly factor BamA 2310 26-90 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001261968 e2qdfA11 002987557 Q87ME5_nD5 Q87ME5 Q87ME5_VIBPA VP2310 bamA Outer membrane protein assembly factor BamA 2310 346-420 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001122870 e4k3cA2 002987558 Q87ME5_nD2 Q87ME5 Q87ME5_VIBPA VP2310 bamA Outer membrane protein assembly factor BamA 2310 91-175 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 000341322 e2v9hA1 002987559 Q87ME5_nD4 Q87ME5 Q87ME5_VIBPA VP2310 bamA Outer membrane protein assembly factor BamA 2310 266-345 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001261966 e2qdfA9 002987560 Q87ME5_nD3 Q87ME5 Q87ME5_VIBPA VP2310 bamA Outer membrane protein assembly factor BamA 2310 176-265 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001788078 e5d0oA6 002987561 Q87P28_nD1 Q87P28 Q87P28_VIBPA VP1690 Lipoprotein 1690 21-80 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 001405794 e4w4mK1 002987562 Q87P28_nD2 Q87P28 Q87P28_VIBPA VP1690 Lipoprotein 1690 81-200 f a.11 327 327.13 327.13.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif I in type III secretion system Ring-building motif I in type III secretion system 001935466 e5tcpL2 002987563 Q87P28_nD3 Q87P28 Q87P28_VIBPA VP1690 Lipoprotein 1690 216-240 f a.17 3598 3598.1 3598.1.1 a/b three-layered sandwiches Cellulose Synthase Subunit B a/b domain Cellulose Synthase Subunit B a/b domain Cellulose Synthase Subunit B a/b domain 001285159 e4p02B2 002987564 Q87MD8_nD1 Q87MD8 RS2_VIBPA VP2318 rpsB 30S ribosomal protein S2 2318 1-235 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001550271 e4toiA1 002987565 Q79YV5_nD1 Q79YV5 Q79YV5_VIBPA VP2515 Hypoxanthine phosphoribosyltransferase 2515 1-175 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 002093517 e5knsB1 002987566 Q87N98_nD1 Q87N98 Q87N98_VIBPA VP1977 DUF4250 domain-containing protein 1977 16-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000352703 e3e7lD1 002987567 Q87LG4_nD1 Q87LG4 Q87LG4_VIBPA VP2648 2647 6-170 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001141836 e1yleA1 002987568 Q87FY0_nD1 Q87FY0 Q87FY0_VIBPA VPA1540 4619 26-185 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 000151996 e4fhrA1 002987569 Q87FY0_nD2 Q87FY0 Q87FY0_VIBPA VPA1540 4619 196-265 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 001558568 e4yxcB2 002987570 Q87LI4_nD1 Q87LI4 Q87LI4_VIBPA VP2628 2627 46-200 f a.12 312 312.2 312.2.1 a+b three layers HIT-like Lytic transglycosylase MltC N-terminal domain Lytic transglycosylase MltC N-terminal domain 001322530 e4c5fB1 002987571 Q87LI4_nD2 Q87LI4 Q87LI4_VIBPA VP2628 2627 201-375 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001322531 e4c5fB2 002987572 Q87FE1_nD1 Q87FE1 Q87FE1_VIBPA VPA1738 4817 1-195 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001298300 e4lafA1 002987573 Q87KV8_nD3 Q87KV8 NHAP2_VIBPA VP2867 nhaP2 K(+)/H(+) antiporter NhaP2 2866 501-570 f a.14 217 217.2 217.2.1 a+b complex topology FAD-binding domain-like CorC/HlyC domain-like CorC/HlyC domain-like 000138583 e3llbA1 002987574 Q87KV8_nD1 Q87KV8 NHAP2_VIBPA VP2867 nhaP2 K(+)/H(+) antiporter NhaP2 2866 6-395 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001422103 e4czbB1 002987575 Q87KV8_nD2 Q87KV8 NHAP2_VIBPA VP2867 nhaP2 K(+)/H(+) antiporter NhaP2 2866 406-485 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 000384309 e3l4bD1 002987576 Q87HM2_nD1 Q87HM2 Q87HM2_VIBPA VPA0941 4020 1-95 f a.6 103 103.2 103.2.1 alpha arrays RuvA-C ATP cone ATP cone 002141738 e5olkA2 002987577 Q87HM2_nD2 Q87HM2 Q87HM2_VIBPA VPA0941 4020 96-240,261-685 f a.16 2500 2500.1 2500.1.1 a/b barrels Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel 000009015 e1hk8A1 002987578 Q87M84_nD2 Q87M84 Q87M84_VIBPA VP2374 recB RecBCD enzyme subunit RecB 2374 911-1210 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001230984 e3k70B9 002987579 Q87M84_nD1 Q87M84 Q87M84_VIBPA VP2374 recB RecBCD enzyme subunit RecB 2374 16-910 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001495165 e1w36B1 002987580 Q87IH0_nD1 Q87IH0 Q87IH0_VIBPA VPA0636 3715 6-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009677 e1b0uA1 002987581 Q87PJ6_nD2 Q87PJ6 Q87PJ6_VIBPA VP1506 fdhD Sulfur carrier protein FdhD 1506 96-265 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 001031012 e2pw9A3 002987582 Q87PJ6_nD1 Q87PJ6 Q87PJ6_VIBPA VP1506 fdhD Sulfur carrier protein FdhD 1506 36-95 f a.11 221 221.10 221.10.1 a+b two layers beta-Grasp FdhD/NarQ beta-grasp fold domain FdhD/NarQ beta-grasp fold domain 001032929 e2pw9D2 002987583 Q87RV7_nD1 Q87RV7 Q87RV7_VIBPA VP0669 Deacylase 669 11-245 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001268611 e3cdxA2 002987584 Q87RV7_nD2 Q87RV7 Q87RV7_VIBPA VP0669 Deacylase 669 246-335 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001513383 e3cdxA3 002987585 Q87JA9_nD1 Q87JA9 Q87JA9_VIBPA VPA0344 3423 46-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816520 e7cz9B7 002987586 Q87JA9_nD4 Q87JA9 Q87JA9_VIBPA VPA0344 3423 6-45,326-495 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002987587 Q87JA9_nD3 Q87JA9 Q87JA9_VIBPA VPA0344 3423 136-180,271-325 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002672279 e6vejC7 002987588 Q87JA9_nD8 Q87JA9 Q87JA9_VIBPA VPA0344 3423 501-555,856-1030 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002987589 Q87JA9_nD5 Q87JA9 Q87JA9_VIBPA VPA0344 3423 561-660 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002754738 e7m4pA4 002987590 Q87JA9_nD2 Q87JA9 Q87JA9_VIBPA VPA0344 3423 181-270 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002987591 Q87JA9_nD6 Q87JA9 Q87JA9_VIBPA VPA0344 3423 706-795 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730400 e7kf7A6 002987592 Q87JA9_nD7 Q87JA9 Q87JA9_VIBPA VPA0344 3423 661-705,796-855 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002987593 Q87LY5_nD1 Q87LY5 Q87LY5_VIBPA VP2473 HlyD_D23 domain-containing protein 2473 81-115,176-210 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002987594 Q87LY5_nD2 Q87LY5 Q87LY5_VIBPA VP2473 HlyD_D23 domain-containing protein 2473 116-175 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001070258 e4l8jA1 002987595 Q87LY5_nD3 Q87LY5 Q87LY5_VIBPA VP2473 HlyD_D23 domain-containing protein 2473 66-80,211-285 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145751 e3lnnA2 002987596 Q87LY5_nD4 Q87LY5 Q87LY5_VIBPA VP2473 HlyD_D23 domain-containing protein 2473 47-65,286-360 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002987597 Q87I12_nD2 Q87I12 Q87I12_VIBPA VPA0794 3873 96-165,276-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002496433 e6gz2A1 002987598 Q87I12_nD1 Q87I12 Q87I12_VIBPA VPA0794 3873 6-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002987599 Q87I12_nD3 Q87I12 Q87I12_VIBPA VPA0794 3873 151-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002987600 Q87I30_nD1 Q87I30 Q87I30_VIBPA VPA0776 3855 1-129 f a.7 159 159.1 159.1.1 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases Hypothetical protein AF_0060 000185138 e3craA2 002987601 Q87Q84_nD3 Q87Q84 Q87Q84_VIBPA VP1266 J domain-containing protein 1266 261-320 f a.7 650 650.1 650.1.1 alpha bundles Chaperone J-domain Chaperone J-domain Chaperone J-domain 000307123 e2guzN1 002987602 Q87Q84_nD1 Q87Q84 Q87Q84_VIBPA VP1266 J domain-containing protein 1266 26-150 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002476883 e6if6A1 002987603 Q87Q84_nD2 Q87Q84 Q87Q84_VIBPA VP1266 J domain-containing protein 1266 226-260 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002068819 e4owiB1 002987604 Q56696_nD3 Q56696 COLA_VIBPA VPA0459 prt Microbial collagenase 3538 586-695 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 000396747 e3afgB2 002987605 Q56696_nD4 Q56696 COLA_VIBPA VPA0459 prt Microbial collagenase 3538 706-815 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001872117 e5sv5A1 002987606 Q56696_nD1 Q56696 COLA_VIBPA VPA0459 prt Microbial collagenase 3538 1-305 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001147777 e2y3uA1 002987607 Q56696_nD2 Q56696 COLA_VIBPA VPA0459 prt Microbial collagenase 3538 306-570 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001168933 e4ar9A1 002987608 Q87HY6_nD1 Q87HY6 Q87HY6_VIBPA VPA0820 3899 31-125,221-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002987609 Q87HY6_nD2 Q87HY6 Q87HY6_VIBPA VPA0820 3899 126-220 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001521257 e3k4uD2 002987610 Q87KP0_nD1 Q87KP0 Q87KP0_VIBPA VP2937 Diphthami_syn_2 domain-containing protein 2936 6-220 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009843 e2d13A1 002987611 Q87MX4_nD1 Q87MX4 RNFA_VIBPA VP2102 rnfA Ion-translocating oxidoreductase complex subunit A 2102 6-190 f a.10 3921 3921.1 3921.1.1 alpha complex topology Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D 001488368 e4p6vE1 002987612 Q87FY5_nD2 Q87FY5 Q87FY5_VIBPA VPA1535 Flagellar motor switch protein FliG 4614 101-330 f a.6 531 531.1 531.1.1 alpha arrays Domains of FliG C-terminal domain of FliG C-terminal domain of FliG 001149078 e3usyA3 002987613 Q87FY5_nD1 Q87FY5 Q87FY5_VIBPA VPA1535 Flagellar motor switch protein FliG 4614 11-75 f a.6 531 531.3 531.3.1 alpha arrays Domains of FliG N-terminal domain of FliG N-terminal domain of FliG 002141248 e5wujB1 002987614 Q87JJ3_nD2 Q87JJ3 Q87JJ3_VIBPA VPA0256 Transporter 3335 36-238 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002414893 e6hcyB1 002987615 Q87JJ3_nD1 Q87JJ3 Q87JJ3_VIBPA VPA0256 Transporter 3335 11-35 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002987616 Q87M81_nD1 Q87M81 Q87M81_VIBPA VP2377 C4-dicarboxylate ABC transporter 2377 1-320 f a.9 109 109.37 109.37.1 alpha superhelices Repetitive alpha hairpins Anion channel SLAC1-related Anion channel SLAC1-related 001505863 e3m73A1 002987617 Q87JH2_nD1 Q87JH2 Q87JH2_VIBPA VPA0281 CENP-V/GFA domain-containing protein 3360 1-133 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 002645133 e1xa8B1 002987618 Q87GW1_nD1 Q87GW1 Q87GW1_VIBPA VPA1204 4283 1-270 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 001481065 e4o9cF1 002987619 Q87GW1_nD2 Q87GW1 Q87GW1_VIBPA VPA1204 4283 271-400 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000299956 e2c7zA2 002987620 Q87M32_nD1 Q87M32 Q87M32_VIBPA VP2426 DUF1127 domain-containing protein 2426 21-69 f a.5 825 825.1 825.1.1 beta complex topology Aerolysin family of pore-forming toxins Aerolysin family of pore-forming toxins Aerolysin family of pore-forming toxins 001155879 e2ztbB2 002987621 Q87TP2_nD2 Q87TP2 Q87TP2_VIBPA VP0027 27 111-185,291-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002987622 Q87TP2_nD1 Q87TP2 Q87TP2_VIBPA VP0027 27 21-105 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002987623 Q87TP2_nD3 Q87TP2 Q87TP2_VIBPA VP0027 27 186-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002987624 Q87JZ1_nD2 Q87JZ1 Q87JZ1_VIBPA VPA0107 3186 96-310 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002987625 Q87JZ1_nD1 Q87JZ1 Q87JZ1_VIBPA VPA0107 3186 1-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002987626 Q87I85_nD3 Q87I85 Q87I85_VIBPA VPA0721 3800 151-175 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002800448 e7ofhL2 002987627 Q87I85_nD4 Q87I85 Q87I85_VIBPA VPA0721 3800 191-415 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002672677 e6w6mK1 002987628 Q87I85_nD2 Q87I85 Q87I85_VIBPA VPA0721 3800 96-150,176-185 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 002810762 e6xmvA2 002987629 Q87I85_nD1 Q87I85 Q87I85_VIBPA VPA0721 3800 26-95 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001397 e1f1sA1 002987630 Q87R71_nD1 Q87R71 Q87R71_VIBPA VP0927 927 6-15,36-300 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001318437 e4cvqA1 002987631 Q87R71_nD2 Q87R71 Q87R71_VIBPA VP0927 927 301-404 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001318438 e4cvqA2 002987632 Q87KQ9_nD1 Q87KQ9 Q87KQ9_VIBPA VP2917 Secreted protein 2916 26-245 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002117039 e5mfiB1 002987633 Q87J60_nD1 Q87J60 Q87J60_VIBPA VPA0393 N-acetylglucosaminyltransferase 3472 31-420 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001902972 e4p02A1 002987634 Q87MB1_nD2 Q87MB1 Q87MB1_VIBPA VP2345 FAD:protein FMN transferase 2345 211-334 f a.11 230 230.4 230.4.1 a+b two layers T-fold ApbE-like ApbE-like 001201977 e3pndC4 002987635 Q87MB1_nD1 Q87MB1 Q87MB1_VIBPA VP2345 FAD:protein FMN transferase 2345 26-205 f a.11 230 230.4 230.4.1 a+b two layers T-fold ApbE-like ApbE-like 002458643 e6nxiA1 002987636 Q87TH9_nD2 Q87TH9 Q87TH9_VIBPA VP0090 DUF883_C domain-containing protein 90 41-65 f a.21 3396 3396.1 3396.1.1 extended segments HIG1 domain family member 1A HIG1 domain family member 1A HIG1 domain family member 1A 000184804 e2lomA1 002987637 Q87TH9_nD1 Q87TH9 Q87TH9_VIBPA VP0090 DUF883_C domain-containing protein 90 6-40 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001756673 e3vkgA15 002987638 Q87PZ3_nD2 Q87PZ3 Q87PZ3_VIBPA VP1357 TonB-dependent receptor 1357 226-260 f a.1 5084 5084.3 5084.3.1 beta barrels Outer membrane meander beta-barrels Autotransporter Autotransporter 000145306 e3sljA1 002987639 Q87PZ3_nD1 Q87PZ3 Q87PZ3_VIBPA VP1357 TonB-dependent receptor 1357 26-225,261-300 f 002987640 Q87N37_nD3 Q87N37 Q87N37_VIBPA VP2038 2038 206-375 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011225 e1z05A2 002987641 Q87N37_nD1 Q87N37 Q87N37_VIBPA VP2038 2038 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001905866 e5f7qJ2 002987642 Q87N37_nD2 Q87N37 Q87N37_VIBPA VP2038 2038 81-205,376-405 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011226 e1z05A3 002987643 P46231_nD1 P46231 Y2115_VIBPA VP2115 Uncharacterized membrane protein VP2115 2115 6-440 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001549199 e4r0cD1 002987644 P19250_nD1 P19250 HLY2_VIBPA VPA1314 tdh2 Thermostable direct hemolysin 2 4393 36-189 f a.3 11 11.8 11.8.1 beta sandwiches Immunoglobulin-like beta-sandwich Osmotin-like Osmotin-like 000138722 e3a57A1 002987645 Q87JG5_nD1 Q87JG5 Q87JG5_VIBPA VPA0288 Leukocidin domain-containing protein 3367 26-323 f a.3 11 11.13 11.13.1 beta sandwiches Immunoglobulin-like beta-sandwich Leukocidin-like Leukocidin-like 001871109 e5k59A1 002987646 Q87SI5_nD1 Q87SI5 RL13_VIBPA VP0438 rplM 50S ribosomal protein L13 438 1-140 f a.17 2490 2490.2 2490.2.1 a/b three-layered sandwiches Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A 001860039 e5j8aDK1 002987647 Q87NN8_nD1 Q87NN8 Q87NN8_VIBPA VP1830 Type II toxin-antitoxin system RelE/ParE family toxin 1830 1-85 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 001712440 e5cegB1 002987648 Q87MJ5_nD1 Q87MJ5 Q87MJ5_VIBPA VP2255 2255 1-95 f a.7 3718 3718.1 3718.1.1 alpha bundles Flagellar protein fliT Flagellar protein fliT Flagellar protein fliT 001141909 e3h3mA1 002987649 Q87MQ8_nD1 Q87MQ8 Y2173_VIBPA VP2173 UPF0597 protein VP2173 2173 21-160 f a.11 298 298.3 298.3.1 a+b two layers FwdE/GAPDH domain-like Serine dehydratase beta chain-like Serine dehydratase beta chain-like 001411397 e4rqoB1 002987650 Q87MQ8_nD2 Q87MQ8 Y2173_VIBPA VP2173 UPF0597 protein VP2173 2173 176-425 f a.6 4021 4021.1 4021.1.1 alpha arrays alpha-helical domain in 2-methylcitrate dehydratase PrpD alpha-helical domain in 2-methylcitrate dehydratase PrpD alpha-helical domain in 2-methylcitrate dehydratase PrpD 001411398 e4rqoB2 002987651 Q87PA6_nD5 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 521-640 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002573989 e6kz4B3 002987652 Q87PA6_nD2 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 161-280 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002568839 e6kz3A2 002987653 Q87PA6_nD6 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 641-745 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002573988 e6kz4B2 002987654 Q87PA6_nD1 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 46-155 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002568839 e6kz3A2 002987655 Q87PA6_nD4 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 396-465,486-515 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002573989 e6kz4B3 002987656 Q87PA6_nD7 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 751-875 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002573987 e6kz4B1 002987657 Q87PA6_nD3 Q87PA6 Q87PA6_VIBPA VP1611 Paraquat-inducible protein B 1611 281-395 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002568840 e6kz3A3 002987658 Q87FX5_nD2 Q87FX5 Q87FX5_VIBPA VPA1545 flhB Flagellar biosynthetic protein FlhB 4624 11-50,96-240 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002639168 e6welD1 002987659 Q87FX5_nD1 Q87FX5 Q87FX5_VIBPA VPA1545 flhB Flagellar biosynthetic protein FlhB 4624 51-95 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 000454311 e2xqtE1 002987660 Q87FX5_nD3 Q87FX5 Q87FX5_VIBPA VPA1545 flhB Flagellar biosynthetic protein FlhB 4624 241-350 f a.3 4104 4104.1 4104.1.1 beta sandwiches EscU C-terminal domain-like EscU C-terminal domain-like EscU C-terminal domain-like 000145352 e3t7yA1 002987661 Q87M11_nD1 Q87M11 Q87M11_VIBPA VP2447 ubiU Ubiquinone biosynthesis protein UbiU 2447 1-330 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001715987 e5d88A1 002987662 Q87HX1_nD1 Q87HX1 Q87HX1_VIBPA VPA0835 gsk Guanosine-inosine kinase 3914 1-430 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 002816095 e6vwpD1 002987663 Q87GM7_nD1 Q87GM7 Q87GM7_VIBPA VPA1288 PNPLA domain-containing protein 4367 6-280 f a.17 2007 2007.1 2007.1.19 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like 001380481 e4akfA2 002987664 Q87IP3_nD1 Q87IP3 Q87IP3_VIBPA VPA0563 3642 1-159 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 000372305 e3iq1D1 002987665 Q87NA7_nD4 Q87NA7 Q87NA7_VIBPA VP1968 histidine kinase 1968 471-525 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002987666 Q87NA7_nD3 Q87NA7 Q87NA7_VIBPA VP1968 histidine kinase 1968 246-260,306-470 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001308505 e3lfvA2 002987667 Q87NA7_nD5 Q87NA7 Q87NA7_VIBPA VP1968 histidine kinase 1968 531-685 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223391 e3d2rB3 002987668 Q87NA7_nD2 Q87NA7 Q87NA7_VIBPA VP1968 histidine kinase 1968 261-305 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002570781 e6s1kA3 002987669 Q87NA7_nD1 Q87NA7 Q87NA7_VIBPA VP1968 histidine kinase 1968 1-245 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002762677 e7m3gB4 002987670 Q87NA7_nD6 Q87NA7 Q87NA7_VIBPA VP1968 histidine kinase 1968 716-835 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002599894 e6ontA1 002987671 Q87SP2_nD2 Q87SP2 Q87SP2_VIBPA VP0380 380 101-220 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002987672 Q87SP2_nD1 Q87SP2 Q87SP2_VIBPA VP0380 380 1-100 f a.11 252 252.2 252.2.1 a+b two layers DNA-binding domain GCC-box binding domain-like GCC-box binding domain-like 000136653 e3jtzA1 002987673 Q87SP2_nD4 Q87SP2 Q87SP2_VIBPA VP0380 380 361-420 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000154242 e4a8eA2 002987674 Q87SP2_nD3 Q87SP2 Q87SP2_VIBPA VP0380 380 221-360 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000150341 e3vcfA1 002987675 Q87IS4_nD1 Q87IS4 Q87IS4_VIBPA VPA0532 Lysine transporter LysE 3611 1-210 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002987676 Q87MV9_nD1 Q87MV9 Q87MV9_VIBPA VP2122 UPF0056 inner membrane protein 2122 6-205 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001139087 e3wdoA4 002987677 Q87GR0_nD2 Q87GR0 Q87GR0_VIBPA VPA1255 AAA_13 domain-containing protein 4334 256-310 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 002642070 e6zffA1 002987678 Q87GR0_nD5 Q87GR0 Q87GR0_VIBPA VPA1255 AAA_13 domain-containing protein 4334 651-770 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000157755 e1wwpA1 002987679 Q87GR0_nD1 Q87GR0 Q87GR0_VIBPA VPA1255 AAA_13 domain-containing protein 4334 151-220,416-455 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002987680 Q87GR0_nD3 Q87GR0 Q87GR0_VIBPA VPA1255 AAA_13 domain-containing protein 4334 231-250,311-415 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002816307 e6z26B1 002987681 Q87GR0_nD4 Q87GR0 Q87GR0_VIBPA VPA1255 AAA_13 domain-containing protein 4334 1-150,456-650 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002044878 e5h68A1 002987682 Q87FG7_nD1 Q87FG7 Q87FG7_VIBPA VPA1712 Cupin_2 domain-containing protein 4791 1-149 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001304 e2f4pA1 002987683 Q87SK1_nD1 Q87SK1 Q87SK1_VIBPA VP0421 421 31-110 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 002674771 e6ynwH1 002987684 Q87SK1_nD2 Q87SK1 Q87SK1_VIBPA VP0421 421 111-165 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 000997502 e4i44A1 002987685 Q87SK1_nD4 Q87SK1 Q87SK1_VIBPA VP0421 421 166-235,361-435 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002608170 e6tz4O1 002987686 Q87SK1_nD3 Q87SK1 Q87SK1_VIBPA VP0421 421 236-360 f 002987687 Q87N70_nD1 Q87N70 Q87N70_VIBPA VP2005 2005 36-170 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002392103 e6gc1C1 002987688 Q87TB0_nD1 Q87TB0 RPOZ_VIBPA VP0160 rpoZ DNA-directed RNA polymerase subunit omega 160 6-90 f a.6 152 152.1 152.1.2 alpha arrays RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit 001548523 e4ylnK1 002987689 Q87HE5_nD1 Q87HE5 Q87HE5_VIBPA VPA1020 Adenylate kinase 4099 1-174 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000446979 e3tlxB1 002987690 Q87P79_nD1 Q87P79 Q87P79_VIBPA VP1639 queE 7-carboxy-7-deazaguanine synthase 1639 1-220 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002442755 e6nhlB1 002987691 Q87N36_nD3 Q87N36 Q87N36_VIBPA VP2039 Pyruvate kinase 2039 346-480 f a.17 7518 7518.1 7518.1.1 a/b three-layered sandwiches PK C-terminal domain-like PK C-terminal domain-like PK C-terminal domain-like 002527184 e6qxlJ2 002987692 Q87N36_nD1 Q87N36 Q87N36_VIBPA VP2039 Pyruvate kinase 2039 76-170 f a.1 1 1.1 1.1.15 beta barrels cradle loop barrel RIFT-related PK beta-barrel domain-like 002537693 e6qxlG2 002987693 Q87N36_nD2 Q87N36 Q87N36_VIBPA VP2039 Pyruvate kinase 2039 6-75,171-345 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002537694 e6qxlG3 002987694 Q87KZ8_nD1 Q87KZ8 Q87KZ8_VIBPA VP2826 2825 6-75,101-470 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002987695 Q87LE5_nD1 Q87LE5 Q87LE5_VIBPA VP2667 lptC Lipopolysaccharide export system protein LptC 2666 41-180 f a.2 3523 3523.1 3523.1.1 beta meanders Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) 002491895 e6mitC1 002987696 Q87PN6_nD1 Q87PN6 Q87PN6_VIBPA VP1465 1465 16-220 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002987697 Q87PN6_nD2 Q87PN6 Q87PN6_VIBPA VP1465 1465 241-490 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002388911 e6cc4A3 002987698 Q87RU7_nD1 Q87RU7 Q87RU7_VIBPA VP0679 Riboflavin biosynthesis protein RibD 679 11-155 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 000235717 e3zpcA2 002987699 Q87RU7_nD2 Q87RU7 Q87RU7_VIBPA VP0679 Riboflavin biosynthesis protein RibD 679 156-370 f a.17 7501 7501.1 7501.1.1 a/b three-layered sandwiches Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases 000163314 e2g6vA1 002987700 Q87RS9_nD1 Q87RS9 Q87RS9_VIBPA VP0698 AMP nucleosidase 698 1-110 f a.11 3623 3623.1 3623.1.1 a+b two layers Uncharacterized protein VC_0899 Uncharacterized protein VC_0899 Uncharacterized protein VC_0899 000334020 e3bq9B2 002987701 Q87RS9_nD2 Q87RS9 Q87RS9_VIBPA VP0698 AMP nucleosidase 698 111-450 f a.17 7563 7563.1 7563.1.1 a/b three-layered sandwiches MCP/YpsA-related MCP/YpsA-related MCP/YpsA-related 000334019 e3bq9B1 002987702 Q87R74_nD1 Q87R74 Q87R74_VIBPA VP0923 tRNA-uridine aminocarboxypropyltransferase 923 6-195 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 001855572 e5apgC1 002987703 Q87GG6_nD1 Q87GG6 4429 21-210 f 002987704 Q87GX5_nD3 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 136-185,276-330 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002502614 e6owsA8 002987705 Q87GX5_nD4 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 1-35,331-510 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002987706 Q87GX5_nD1 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 41-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816520 e7cz9B7 002987707 Q87GX5_nD7 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 676-725,811-870 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001396259 e3w9iF3 002987708 Q87GX5_nD2 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 186-275 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 001319995 e4mt1A5 002987709 Q87GX5_nD5 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 561-675 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816517 e7cz9B4 002987710 Q87GX5_nD8 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 511-560,871-1045 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002099444 e5lq3F5 002987711 Q87GX5_nD6 Q87GX5 Q87GX5_VIBPA VPA1190 Efflux pump membrane transporter 4269 726-810 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 001312389 e4k0eA8 002987712 Q87LU8_nD1 Q87LU8 Q87LU8_VIBPA VP2510 Transport permease protein 2510 1-255 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002455677 e6m96B1 002987713 Q87IU0_nD1 Q87IU0 Q87IU0_VIBPA VPA0516 SAF domain-containing protein 3595 51-209 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 002773773 e6rw8A4 002987714 Q87L98_nD2 Q87L98 Q87L98_VIBPA VP2714 2713 306-373 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001192666 e2z9wB3 002987715 Q87L98_nD1 Q87L98 Q87L98_VIBPA VP2714 2713 1-305 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001192641 e3islB2 002987716 Q87N52_nD1 Q87N52 Q87N52_VIBPA VP2023 2023 1-335 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001934022 e5u4qA1 002987717 Q87LM8_nD2 Q87LM8 YGFZ_VIBPA VP2583 tRNA-modifying protein YgfZ 2582 236-320 f a.1 1 1.1 1.1.8 beta barrels cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain 001612800 e4pabA2 002987718 Q87LM8_nD1 Q87LM8 YGFZ_VIBPA VP2583 tRNA-modifying protein YgfZ 2582 6-230 f a.11 304 304.107 304.107.1 a+b two layers Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain 002068824 e4p9sA4 002987719 Q87L65_nD1 Q87L65 Q87L65_VIBPA VP2747 2746 86-170 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 000999030 e2lc4A1 002987720 Q87SU3_nD1 Q87SU3 RL27_VIBPA VP0329 rpmA 50S ribosomal protein L27 329 6-85 f a.14 325 325.1 325.1.8 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein 002773421 e6eriAW1 002987721 Q87GD3_nD1 Q87GD3 Q87GD3_VIBPA VPA1384 DUF1622 domain-containing protein 4463 1-25,66-105 f a.7 3718 3718.1 3718.1.1 alpha bundles Flagellar protein fliT Flagellar protein fliT Flagellar protein fliT 001068649 e3nkzA1 002987722 Q87NC8_nD2 Q87NC8 Q87NC8_VIBPA VP1940 Carboxynorspermidine/carboxyspermidine decarboxylase 1940 246-370 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001160347 e3n29A4 002987723 Q87NC8_nD1 Q87NC8 Q87NC8_VIBPA VP1940 Carboxynorspermidine/carboxyspermidine decarboxylase 1940 1-245 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001160346 e3n29A3 002987724 Q87KK9_nD1 Q87KK9 Q87KK9_VIBPA VP2968 2967 1-205 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001139701 e4ikvA1 002987725 Q87KK9_nD2 Q87KK9 Q87KK9_VIBPA VP2968 2967 206-400 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002728876 e7dl9B1 002987726 Q87KR7_nD2 Q87KR7 Q87KR7_VIBPA VP2909 Tyr recombinase domain-containing protein 2908 161-285,316-355 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 001504637 e4dwpA1 002987727 Q87KR7_nD1 Q87KR7 Q87KR7_VIBPA VP2909 Tyr recombinase domain-containing protein 2908 21-155 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 000003058 e1a0pA3 002987728 Q87KR7_nD3 Q87KR7 Q87KR7_VIBPA VP2909 Tyr recombinase domain-containing protein 2908 356-410 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 001267988 e3mgvC4 002987729 Q87KR7_nD4 Q87KR7 Q87KR7_VIBPA VP2909 Tyr recombinase domain-containing protein 2908 446-525 f a.7 192 192.17 192.17.1 alpha bundles Long alpha-hairpin Rabenosyn-5 Rab-binding domain-like Rabenosyn-5 Rab-binding domain-like 000004686 e1z0jB1 002987730 Q87N01_nD1 Q87N01 DUSC_VIBPA VP2075 dusC tRNA-dihydrouridine(16) synthase 2075 1-320 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001108227 e4bfaB1 002987731 Q87K55_nD1 Q87K55 Q87K55_VIBPA VPA0043 Oxidoreductase 3122 16-140 f a.19 174 174.1 174.1.1 few secondary structure elements Tetraspanin transmembrane domain Tetraspanin transmembrane domain Tetraspanin transmembrane domain 002627913 e6k4jA1 002987732 Q87HC0_nD3 Q87HC0 Q87HC0_VIBPA VPA1045 Response regulatory domain-containing protein 4124 456-505 f a.9 109 109.26 109.26.1 alpha superhelices Repetitive alpha hairpins Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains 001312394 e4fhnB3 002987733 Q87HC0_nD2 Q87HC0 Q87HC0_VIBPA VPA1045 Response regulatory domain-containing protein 4124 146-455 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002457053 e6id1J1 002987734 Q87HC0_nD1 Q87HC0 Q87HC0_VIBPA VPA1045 Response regulatory domain-containing protein 4124 1-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001503901 e4r3uC1 002987735 Q87R81_nD1 Q87R81 TIG_VIBPA VP0916 tig Trigger factor 916 1-115 f a.11 306 306.7 306.7.1 a+b two layers Glucose permease domain IIB-like Trigger factor ribosome-binding domain Trigger factor ribosome-binding domain 000068053 e1t11A2 002987736 Q87R81_nD2 Q87R81 TIG_VIBPA VP0916 tig Trigger factor 916 121-245 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 001180110 e1w26A6 002987737 Q87R81_nD3 Q87R81 TIG_VIBPA VP0916 tig Trigger factor 916 266-430 f a.6 589 589.1 589.1.2 alpha arrays Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like TF C-terminus (Pfam 05698) 001180109 e1w26A5 002987738 Q87KM7_nD1 Q87KM7 Q87KM7_VIBPA VP2950 Flagellar protein FliL 2949 31-135 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000996940 e3bk6B1 002987739 Q87QR6_nD3 Q87QR6 Q87QR6_VIBPA VP1083 DNA helicase 1083 886-1120 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001233609 e4cejB5 002987740 Q87QR6_nD2 Q87QR6 Q87QR6_VIBPA VP1083 DNA helicase 1083 186-885 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001397092 e4ceiA4 002987741 Q87QR6_nD1 Q87QR6 Q87QR6_VIBPA VP1083 DNA helicase 1083 6-180 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002472901 e6cyyA1 002987742 Q87ST4_nD1 Q87ST4 SURA_VIBPA VP0338 surA Chaperone SurA 338 21-160,391-425 f a.6 589 589.1 589.1.1 alpha arrays Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like Porin chaperone SurA, peptide-binding domain 000002396 e1m5yA1 002987743 Q87ST4_nD2 Q87ST4 SURA_VIBPA VP0338 surA Chaperone SurA 338 166-270 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000074655 e1m5yD2 002987744 Q87ST4_nD3 Q87ST4 SURA_VIBPA VP0338 surA Chaperone SurA 338 276-380 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000006493 e1m5yA3 002987745 Q87NE7_nD1 Q87NE7 RIBA_VIBPA VP1921 ribA GTP cyclohydrolase-2 1921 1-195 f a.17 7580 7580.1 7580.1.1 a/b three-layered sandwiches RibA-like RibA-like RibA-like 000010863 e2bz1A1 002987746 Q87P95_nD1 Q87P95 Q87P95_VIBPA VP1623 1623 6-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001554269 e4u02B1 002987747 Q8GRF5_nD1 Q8GRF5 RRF_VIBPA VP2315 frr Ribosome-recycling factor 2315 1-180 f a.11 310 310.2 310.2.1 a+b two layers RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF 002319513 e6eriAz1 002987748 Q87N18_nD1 Q87N18 RL32_VIBPA VP2058 rpmF 50S ribosomal protein L32 2058 21-55 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001514283 e4y4o251 002987749 Q87M24_nD2 Q87M24 DEOB_VIBPA VP2434 deoB Phosphopentomutase 2434 1-115,236-405 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 001902306 e4n7tA2 002987750 Q87M24_nD1 Q87M24 DEOB_VIBPA VP2434 deoB Phosphopentomutase 2434 116-235 f a.12 4344 4344.1 4344.1.1 a+b three layers DeoB insert domain-like DeoB insert domain-like DeoB insert domain-like 001902944 e3ot9A1 002987751 Q87IJ1_nD1 Q87IJ1 Q87IJ1_VIBPA VPA0615 hydroxymethylglutaryl-CoA lyase 3694 1-300 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000291963 e2cw6B1 002987752 Q87SK4_nD1 Q87SK4 Q87SK4_VIBPA VP0419 TIGR00153 family protein 419 16-228 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 000314469 e2oltC1 002987753 Q87NL8_nD1 Q87NL8 Q87NL8_VIBPA VP1850 1850 1-135 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002047891 e5ib0C1 002987754 Q87SP5_nD3 Q87SP5 Q87SP5_VIBPA VP0377 377 181-230 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002987755 Q87SP5_nD1 Q87SP5 Q87SP5_VIBPA VP0377 377 6-130 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001821889 e4mloA2 002987756 Q87SP5_nD2 Q87SP5 Q87SP5_VIBPA VP0377 377 131-180 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670618 e6swiA1 002987757 Q87SI7_nD1 Q87SI7 Q87SI7_VIBPA VP0436 zapE Cell division protein ZapE 436 1-40,61-365 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002592124 e6pp7D1 002987758 Q87T17_nD1 Q87T17 Q87T17_VIBPA VP0253 priA Primosomal protein N' 253 6-110 f a.14 3430 3430.1 3430.1.1 a+b complex topology Primosome assembly protein PriA 3' DNA-binding domain Primosome assembly protein PriA 3' DNA-binding domain Primosome assembly protein PriA 3' DNA-binding domain 002392036 e6dcrA3 002987759 Q87T17_nD2 Q87T17 Q87T17_VIBPA VP0253 priA Primosomal protein N' 253 116-180 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002392048 e6dgdA2 002987760 Q87T17_nD5 Q87T17 Q87T17_VIBPA VP0253 priA Primosomal protein N' 253 636-730 f a.11 304 304.44 304.44.1 a+b two layers Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10 002392038 e6dcrA5 002987761 Q87T17_nD3 Q87T17 Q87T17_VIBPA VP0253 priA Primosomal protein N' 253 181-385 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002392050 e6dgdA4 002987762 Q87T17_nD4 Q87T17 Q87T17_VIBPA VP0253 priA Primosomal protein N' 253 386-615 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002392035 e6dcrA2 002987763 Q87GL9_nD1 Q87GL9 Q87GL9_VIBPA VPA1296 serine-type D-Ala-D-Ala carboxypeptidase 4375 61-175 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 001918518 e5tr7A1 002987764 Q87GL9_nD2 Q87GL9 Q87GL9_VIBPA VPA1296 serine-type D-Ala-D-Ala carboxypeptidase 4375 21-60,176-280 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 000137548 e3a3jA3 002987765 Q87GL9_nD3 Q87GL9 Q87GL9_VIBPA VPA1296 serine-type D-Ala-D-Ala carboxypeptidase 4375 281-385 f a.3 51 51.1 51.1.1 beta sandwiches Penicillin-binding protein associated domain Penicillin-binding protein associated domain Penicillin-binding protein associated domain 001101913 e4k91A1 002987766 Q87P44_nD1 Q87P44 Q87P44_VIBPA VP1674 1674 11-245 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002327776 e6bppA2 002987767 Q87FG3_nD1 Q87FG3 Q87FG3_VIBPA VPA1716 DUF445 domain-containing protein 4795 1-235 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002987768 Q87KI1_nD1 Q87KI1 Q87KI1_VIBPA VP2996 2995 1-89 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 002389025 e5ogxA2 002987769 Q87M04_nD2 Q87M04 TRUB_VIBPA VP2454 truB tRNA pseudouridine synthase B 2454 251-310 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 000000161 e1k8wA1 002987770 Q87M04_nD1 Q87M04 TRUB_VIBPA VP2454 truB tRNA pseudouridine synthase B 2454 6-250 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000005391 e1k8wA2 002987771 Q87L55_nD1 Q87L55 ARGC_VIBPA VP2759 argC N-acetyl-gamma-glutamyl-phosphate reductase 2758 1-150,311-334 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000168544 e3dr3A2 002987772 Q87L55_nD2 Q87L55 ARGC_VIBPA VP2759 argC N-acetyl-gamma-glutamyl-phosphate reductase 2758 151-310 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000006754 e2g17A1 002987773 Q87IC6_nD1 Q87IC6 Q87IC6_VIBPA VPA0680 3759 26-495 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 000010248 e1p49A1 002987774 Q87GV0_nD1 Q87GV0 Q87GV0_VIBPA VPA1215 EamA family transporter 4294 6-300 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002987775 Q87JH0_nD1 Q87JH0 Q87JH0_VIBPA VPA0283 Secreted protein 3362 51-154 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001397034 e2zyrA1 002987776 Q87J92_nD1 Q87J92 Q87J92_VIBPA VPA0361 ABC transporter permease 3440 6-80 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 002388822 e5xs9A1 002987777 Q87IE3_nD1 Q87IE3 Q87IE3_VIBPA VPA0663 3742 76-260 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002516467 e6nwoD1 002987778 Q87IE3_nD2 Q87IE3 Q87IE3_VIBPA VPA0663 3742 261-320 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002987779 Q87IE3_nD3 Q87IE3 Q87IE3_VIBPA VPA0663 3742 321-360 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001839955 e5chhA3 002987780 Q87M72_nD1 Q87M72 GLPK_VIBPA VP2386 glpK Glycerol kinase 2386 1-500 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001873458 e1glfY1 002987781 Q87QG9_nD1 Q87QG9 Q87QG9_VIBPA VP1180 Lipase chaperone 1180 31-185,206-280 f a.6 4990 4990.1 4990.1.1 alpha arrays Lipase chaperone LifO-like Lipase chaperone LifO-like Lipase chaperone LifO-like 000053360 e2es4E1 002987782 P59620_nD3 P59620 ARLY_VIBPA VP2756 argH Bifunctional protein ArgH 2755 351-435 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 000133511 e1tj7A2 002987783 P59620_nD4 P59620 ARLY_VIBPA VP2756 argH Bifunctional protein ArgH 2755 461-624 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002125857 e5ygeA1 002987784 P59620_nD1 P59620 ARLY_VIBPA VP2756 argH Bifunctional protein ArgH 2755 1-105 f a.6 4952 4952.1 4952.1.1 alpha arrays L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like 000133467 e1tj7A3 002987785 P59620_nD2 P59620 ARLY_VIBPA VP2756 argH Bifunctional protein ArgH 2755 106-350,441-460 f a.6 602 602.1 602.1.1 alpha arrays L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like 001131256 e1tj7A4 002987786 Q87L77_nD1 Q87L77 Q87L77_VIBPA VP2735 Replicative DNA helicase 2734 11-170,191-460 f a.6 507 507.1 507.1.1 alpha arrays DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related 002735406 e6t66C1 002987787 Q87I33_nD1 Q87I33 Q87I33_VIBPA VPA0773 3852 1-365 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000303207 e2gq8A1 002987788 Q87PI8_nD1 Q87PI8 Q87PI8_VIBPA VP1514 1514 1-180 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002769939 e7b04A1 002987789 Q87RW9_nD1 Q87RW9 Q87RW9_VIBPA VP0657 Type II secretion system protein H 657 46-185 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000868467 e4dq9B1 002987790 Q87NZ9_nD2 Q87NZ9 Q87NZ9_VIBPA VP1719 1719 321-395 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000064899 e2cdqB1 002987791 Q87NZ9_nD1 Q87NZ9 Q87NZ9_VIBPA VP1719 1719 1-305 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 000010510 e2j0wA3 002987792 Q87NZ9_nD3 Q87NZ9 Q87NZ9_VIBPA VP1719 1719 396-460 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001190370 e3c1mC6 002987793 Q87TF4_nD1 Q87TF4 Q87TF4_VIBPA VP0115 Coproporphyrinogen-III oxidase 115 11-370,451-460 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008987 e1oltA2 002987794 Q87TF4_nD2 Q87TF4 Q87TF4_VIBPA VP0115 Coproporphyrinogen-III oxidase 115 371-450 f a.6 101 101.19 101.19.1 alpha arrays HTH C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN 000002911 e1oltA1 002987795 Q87TN7_nD1 Q87TN7 TRKH_VIBPA VP0032 trkH Trk system potassium uptake protein TrkH 32 1-155 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001165465 e3ukmD1 002987796 Q87TN7_nD2 Q87TN7 TRKH_VIBPA VP0032 trkH Trk system potassium uptake protein TrkH 32 156-260 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001881646 e4j7cJ3 002987797 Q87TN7_nD4 Q87TN7 TRKH_VIBPA VP0032 trkH Trk system potassium uptake protein TrkH 32 391-480 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 000410580 e3pjzB2 002987798 Q87TN7_nD3 Q87TN7 TRKH_VIBPA VP0032 trkH Trk system potassium uptake protein TrkH 32 261-385 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001881645 e4j7cJ2 002987799 Q87HI4_nD2 Q87HI4 Q87HI4_VIBPA VPA0979 4058 166-500,521-725 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001789763 e3v8xA1 002987800 Q87HI4_nD1 Q87HI4 Q87HI4_VIBPA VPA0979 4058 26-165 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001716663 e2gufA1 002987801 Q87KI8_nD1 Q87KI8 Q87KI8_VIBPA VP2989 Uroporphyrinogen-III synthase 2988 41-155 f a.17 2007 2007.1 2007.1.8 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Uroporphyrinogen III synthase (U3S, HemD) 000221985 e4es6A2 002987802 Q87KI8_nD2 Q87KI8 Q87KI8_VIBPA VP2989 Uroporphyrinogen-III synthase 2988 1-35,156-240 f a.17 2007 2007.1 2007.1.8 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Uroporphyrinogen III synthase (U3S, HemD) 000422734 e3re1B1 002987803 Q87HB0_nD5 Q87HB0 Q87HB0_VIBPA VPA1055 4134 486-540 f a.6 101 101.32 101.32.1 alpha arrays HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin 000185707 e4e6kG1 002987804 Q87HB0_nD2 Q87HB0 Q87HB0_VIBPA VPA1055 4134 121-255 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002632341 e6pfzA1 002987805 Q87HB0_nD1 Q87HB0 Q87HB0_VIBPA VPA1055 4134 11-120,256-325 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001684989 e4ywoA1 002987806 Q87HB0_nD6 Q87HB0 Q87HB0_VIBPA VPA1055 4134 541-635,796-835 f a.11 304 304.37 304.37.1 a+b two layers Alpha-beta plaits Sulfite reductase, domains 1 and 3 Sulfite reductase, domains 1 and 3 000148155 e3b0gA2 002987807 Q87HB0_nD4 Q87HB0 Q87HB0_VIBPA VPA1055 4134 426-480 f a.6 101 101.32 101.32.1 alpha arrays HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin 000185707 e4e6kG1 002987808 Q87HB0_nD7 Q87HB0 Q87HB0_VIBPA VPA1055 4134 636-790 f a.12 296 296.1 296.1.1 a+b three layers Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 001180638 e2xsjD8 002987809 Q87HB0_nD3 Q87HB0 Q87HB0_VIBPA VPA1055 4134 326-425 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 001879133 e5fs8A1 002987810 Q87QF6_nD1 Q87QF6 Q87QF6_VIBPA VP1193 CDP-alcohol phosphatidyltransferase family protein 1193 1-203 f a.7 3883 3883.1 3883.1.1 alpha bundles CDP-alcohol phosphotransferase helical bundle domain CDP-alcohol phosphotransferase helical bundle domain CDP-alcohol phosphotransferase helical bundle domain 001700190 e5d92B2 002987811 Q87KS8_nD1 Q87KS8 PUR2_VIBPA VP2898 purD Phosphoribosylamine--glycine ligase 2897 1-100 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 000139332 e3mjfA2 002987812 Q87KS8_nD2 Q87KS8 PUR2_VIBPA VP2898 purD Phosphoribosylamine--glycine ligase 2897 101-325 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001164578 e3vmmA4 002987813 Q87KS8_nD3 Q87KS8 PUR2_VIBPA VP2898 purD Phosphoribosylamine--glycine ligase 2897 291-305,326-425 f a.14 325 325.1 325.1.1 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like 000139333 e3mjfA3 002987814 Q87NL7_nD1 Q87NL7 Q87NL7_VIBPA VP1851 EcsC family protein 1851 16-175,201-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002808317 e7vexA1 002987815 Q87HP1_nD1 Q87HP1 Q87HP1_VIBPA VPA0922 NAD(P) transhydrogenase subunit alpha 4001 1-140,321-390 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 000287512 e1x15A2 002987816 Q87HP1_nD2 Q87HP1 Q87HP1_VIBPA VPA0922 NAD(P) transhydrogenase subunit alpha 4001 141-320 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000097899 e2fsvA1 002987817 Q87HP1_nD3 Q87HP1 Q87HP1_VIBPA VPA0922 NAD(P) transhydrogenase subunit alpha 4001 406-515 f a.7 3892 3892.1 3892.1.1 alpha bundles Transhydrogeanse domain II Transhydrogeanse domain II Transhydrogeanse domain II 001482387 e4o93A1 002987818 Q87KB3_nD2 Q87KB3 Q87KB3_VIBPA VP3064 Bcr/CflA family efflux transporter 3063 186-390 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680302 e4zp0A2 002987819 Q87KB3_nD1 Q87KB3 Q87KB3_VIBPA VP3064 Bcr/CflA family efflux transporter 3063 1-185 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002137981 e6ei3A2 002987820 Q87J37_nD1 Q87J37 Q87J37_VIBPA VPA0416 PlsC domain-containing protein 3495 16-65 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002408703 e5zfrC1 002987821 Q87J37_nD2 Q87J37 Q87J37_VIBPA VPA0416 PlsC domain-containing protein 3495 66-369 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 000010587 e1iuqA1 002987822 Q87PH0_nD2 Q87PH0 Q87PH0_VIBPA VP1532 DUF2987 domain-containing protein 1532 116-215 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001843726 e5fu5A1 002987823 Q87PH0_nD1 Q87PH0 Q87PH0_VIBPA VP1532 DUF2987 domain-containing protein 1532 21-115 f a.11 243 243.4 243.4.1 a+b two layers Cystatin-like DsbC/DsbG N-terminal domain-like DsbC/DsbG N-terminal domain-like 001153941 e3tdgA4 002987824 Q87NP1_nD1 Q87NP1 Q87NP1_VIBPA VP1827 1827 6-180 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000427328 e3tcvB1 002987825 Q87GR6_nD1 Q87GR6 Q87GR6_VIBPA VPA1249 Cobinamide adenolsyltransferase 4328 1-205 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001888605 e5d8mA1 002987826 Q87HU1_nD1 Q87HU1 Q87HU1_VIBPA VPA0865 DUF2238 domain-containing protein 4856 6-190 f a.10 1174 1174.1 1174.1.1 alpha complex topology Potassium channel TMEM175 Potassium channel TMEM175 Potassium channel TMEM175 002576198 e6hd8B1 002987827 Q87QE5_nD1 Q87QE5 Q87QE5_VIBPA VP1204 DUF1289 domain-containing protein 1204 32-60 f a.19 377 377.1 377.1.2 few secondary structure elements Glucocorticoid receptor-like LIM domain-like PARP-type zinc finger 000008200 e1uw0A1 002987828 Q87RU9_nD1 Q87RU9 PROA_VIBPA VP0677 proA Gamma-glutamyl phosphate reductase 677 1-415 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001903868 e1wndB2 002987829 Q87KM4_nD2 Q87KM4 Q87KM4_VIBPA VP2953 rpoH RNA polymerase sigma factor RpoH 2952 121-180 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002454 e1le8A1 002987830 Q87KM4_nD1 Q87KM4 Q87KM4_VIBPA VP2953 rpoH RNA polymerase sigma factor RpoH 2952 16-120 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 001922202 e5tmcF2 002987831 Q87KM4_nD3 Q87KM4 Q87KM4_VIBPA VP2953 rpoH RNA polymerase sigma factor RpoH 2952 206-285 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002505916 e6p18Q1 002987832 Q87PH6_nD2 Q87PH6 Q87PH6_VIBPA VP1526 Putrescine-binding periplasmic protein 1526 146-265,331-355 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002801655 e7oywA1 002987833 Q87PH6_nD1 Q87PH6 Q87PH6_VIBPA VP1526 Putrescine-binding periplasmic protein 1526 31-145,266-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002801655 e7oywA1 002987834 Q87L80_nD1 Q87L80 Q87L80_VIBPA VP2732 YjbQ family protein 2731 1-139 f a.11 846 846.1 846.1.1 a+b two layers YjbQ-like (Pfam 01894) YjbQ-like (Pfam 01894) YjbQ-like (Pfam 01894) 000159042 e2cu5A1 002987835 Q87MF8_nD2 Q87MF8 Q87MF8_VIBPA VP2297 Yip1 domain-containing protein 2297 6-55,81-225 f a.6 101 101.1 101.1.10 alpha arrays HTH HTH Cyclin-like 001114422 e4ellB1 002987836 Q87MF8_nD1 Q87MF8 Q87MF8_VIBPA VP2297 Yip1 domain-containing protein 2297 56-80 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002085426 e5nugB6 002987837 Q87NA1_nD2 Q87NA1 METE_VIBPA VP1974 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1974 386-755 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001716890 e4ztyA2 002987838 Q87NA1_nD1 Q87NA1 METE_VIBPA VP1974 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1974 1-385 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000430852 e3ppgA1 002987839 Q87FI8_nD2 Q87FI8 Q87FI8_VIBPA VPA1691 MFS transporter 4770 61-220 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000004415 e1i4dA1 002987840 Q87FI8_nD1 Q87FI8 Q87FI8_VIBPA VPA1691 MFS transporter 4770 31-60 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002496459 e6i1rB1 002987841 Q87FF8_nD1 Q87FF8 Q87FF8_VIBPA VPA1721 PH domain-containing protein 4800 61-140 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 000000996 e3dcxA1 002987842 Q87IR7_nD1 Q87IR7 Q87IR7_VIBPA VPA0539 cytochrome-c oxidase 3618 16-294 f a.7 5039 5039.1 5039.1.1 alpha bundles Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like 000144976 e2ybbN1 002987843 Q87T85_nD1 Q87T85 RL28_VIBPA VP0185 rpmB 50S ribosomal protein L28 185 1-10,31-75 f a.19 4232 4232.1 4232.1.1 few secondary structure elements Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28 001860066 e5j8aCY1 002987844 Q87KG7_nD1 Q87KG7 Q87KG7_VIBPA VP3010 LysE family translocator 3009 6-219 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002987845 Q87G79_nD2 Q87G79 Q87G79_VIBPA VPA1438 4517 341-655 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000154491 e4g1uA1 002987846 Q87G79_nD1 Q87G79 Q87G79_VIBPA VPA1438 4517 6-320 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 001921594 e5b58A1 002987847 Q87NI2_nD1 Q87NI2 Q87NI2_VIBPA VP1886 Prevent-host-death protein 1886 11-90 f a.15 4267 4267.1 4267.1.1 a+b duplicates or obligate multimers YefM-like YefM-like YefM-like 001273763 e2a6qC2 002987848 Q87NZ5_nD1 Q87NZ5 BCCT2_VIBPA VP1723 Glycine betaine/proline/choline transporter VP1723 1723 41-553 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 001108697 e4c7rA1 002987849 Q87QS0_nD4 Q87QS0 Q87QS0_VIBPA VP1079 FGE-sulfatase domain-containing protein 1079 411-624 f a.14 209 209.1 209.1.2 a+b complex topology C-type lectin-like C-type lectin-like Sulfatase-modifying factor-like 002464389 e6qkjA1 002987850 Q87QS0_nD3 Q87QS0 Q87QS0_VIBPA VP1079 FGE-sulfatase domain-containing protein 1079 106-115,351-410 f a.11 327 327.11 327.11.2 a+b two layers Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I) 001178357 e4ifdH4 002987851 Q87QS0_nD1 Q87QS0 Q87QS0_VIBPA VP1079 FGE-sulfatase domain-containing protein 1079 6-79,116-125,301-325 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 001712440 e5cegB1 002987852 Q87QS0_nD2 Q87QS0 Q87QS0_VIBPA VP1079 FGE-sulfatase domain-containing protein 1079 141-195,222-240,276-300 f a.6 138 138.1 138.1.1 alpha arrays DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain 002584139 e6vvoB1 002987853 Q87FE3_nD3 Q87FE3 Q87FE3_VIBPA VPA1736 4815 451-704 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002448376 e6a6mA1 002987854 Q87FE3_nD2 Q87FE3 Q87FE3_VIBPA VPA1736 4815 131-450 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002322486 e5l22B2 002987855 Q87FE3_nD1 Q87FE3 Q87FE3_VIBPA VPA1736 4815 1-125 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 000185067 e3b79A1 002987856 Q87J15_nD1 Q87J15 Q87J15_VIBPA VPA0440 ribonuclease H 3519 16-160 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002757009 e7o0gA1 002987857 Q87H90_nD5 Q87H90 Q87H90_VIBPA VPA1075 4154 286-413 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223631 e3jz3B3 002987858 Q87H90_nD2 Q87H90 Q87H90_VIBPA VPA1075 4154 51-130 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001557239 e4zr7D1 002987859 Q87H90_nD1 Q87H90 Q87H90_VIBPA VPA1075 4154 16-50,136-160 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002987860 Q87H90_nD4 Q87H90 Q87H90_VIBPA VPA1075 4154 231-280 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002987861 Q87H90_nD3 Q87H90 Q87H90_VIBPA VPA1075 4154 161-230 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002987862 Q87KW2_nD2 Q87KW2 Q87KW2_VIBPA VP2863 Aspartate ammonia-lyase 2862 151-405 f a.6 602 602.1 602.1.1 alpha arrays L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like 001130856 e3r6yE3 002987863 Q87KW2_nD1 Q87KW2 Q87KW2_VIBPA VP2863 Aspartate ammonia-lyase 2862 16-150 f a.6 4952 4952.1 4952.1.1 alpha arrays L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like 002627417 e6wngD2 002987864 Q87KW2_nD3 Q87KW2 Q87KW2_VIBPA VP2863 Aspartate ammonia-lyase 2862 406-475 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 000181629 e3r6qA2 002987865 Q87FH1_nD1 Q87FH1 Q87FH1_VIBPA VPA1708 2-dehydro-3-deoxy-phosphogluconate aldolase 4787 1-209 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001833029 e4e38C1 002987866 Q87RY2_nD1 Q87RY2 SSRP_VIBPA VP0644 smpB SsrA-binding protein 644 12-135 f a.1 2 2.21 2.21.1 beta barrels OB-fold Small protein B (SmpB) Small protein B (SmpB) 002831758 e7ljpC1 002987867 Q87KL3_nD1 Q87KL3 Q87KL3_VIBPA VP2964 DUF4145 domain-containing protein 2963 6-85 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003731 e1wtyA1 002987868 Q87MK2_nD1 Q87MK2 Q87MK2_VIBPA VP2233 2233 11-290 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002794325 e7ejwA1 002987869 Q87ND1_nD2 Q87ND1 Q87ND1_VIBPA VP1937 CinA-like protein 1937 176-250 f a.11 304 304.162 304.162.1 a+b two layers Alpha-beta plaits Competence or damage-inducible protein CinA middle domain Competence or damage-inducible protein CinA middle domain 002409932 e6mr3A2 002987870 Q87ND1_nD1 Q87ND1 Q87ND1_VIBPA VP1937 CinA-like protein 1937 1-170 f a.17 7541 7541.1 7541.1.1 a/b three-layered sandwiches Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins 001488297 e4uuwA1 002987871 Q87ND1_nD3 Q87ND1 Q87ND1_VIBPA VP1937 CinA-like protein 1937 251-400 f a.17 7520 7520.1 7520.1.1 a/b three-layered sandwiches CinA-like CinA-like CinA-like 002602614 e3wvcB1 002987872 Q87NU8_nD2 Q87NU8 Q87NU8_VIBPA VP1770 inorganic diphosphatase 1770 196-315 f a.12 5104 5104.1 5104.1.1 a+b three layers C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases 000007061 e1k20A1 002987873 Q87NU8_nD1 Q87NU8 Q87NU8_VIBPA VP1770 inorganic diphosphatase 1770 1-195 f a.17 2006 2006.1 2006.1.2 a/b three-layered sandwiches HAD domain-like HAD domain-related DHH phosphoesterases 000324850 e2eb0B2 002987874 Q87FZ9_nD1 Q87FZ9 Q87FZ9_VIBPA VPA1521 Bacterial non-heme ferritin 4600 1-155 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 000003956 e1jkvA1 002987875 Q87RF2_nD1 Q87RF2 Q87RF2_VIBPA VP0845 Succinate dehydrogenase flavoprotein subunit 845 6-235,356-450 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000370959 e2wdqI3 002987876 Q87RF2_nD2 Q87RF2 Q87RF2_VIBPA VP0845 Succinate dehydrogenase flavoprotein subunit 845 236-355 f a.14 278 278.1 278.1.1 a+b complex topology Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 001527897 e2ws3I3 002987877 Q87RF2_nD3 Q87RF2 Q87RF2_VIBPA VP0845 Succinate dehydrogenase flavoprotein subunit 845 451-570 f a.7 604 604.2 604.2.1 alpha bundles Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 001527895 e2ws3I1 002987878 Q87GI8_nD2 Q87GI8 Q87GI8_VIBPA VPA1328 DUF4176 domain-containing protein 4407 76-265 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001515938 e4bvuA1 002987879 Q87GI8_nD1 Q87GI8 Q87GI8_VIBPA VPA1328 DUF4176 domain-containing protein 4407 21-75 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002774818 e6lsuA1 002987880 Q87LC8_nD2 Q87LC8 Q87LC8_VIBPA VP2684 2683 241-480 f a.1 3053 3053.1 3053.1.1 beta barrels barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD 002123826 e5nj9A3 002987881 Q87LC8_nD1 Q87LC8 Q87LC8_VIBPA VP2684 2683 6-240 f a.11 512 512.1 512.1.1 a+b two layers a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 000070450 e1vl4B3 002987882 Q87GK6_nD1 Q87GK6 Q87GK6_VIBPA VPA1309 Cupin 4388 6-190 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000195932 e2qdrA1 002987883 Q87N60_nD1 Q87N60 Q87N60_VIBPA VP2015 2015 26-100 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000003351 e1h1oA1 002987884 Q87N60_nD2 Q87N60 Q87N60_VIBPA VP2015 2015 101-203 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001890618 e5lo9A4 002987885 Q87NE2_nD2 Q87NE2 Q87NE2_VIBPA VP1926 1926 211-320 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 000184933 e2vpwC2 002987886 Q87NE2_nD1 Q87NE2 Q87NE2_VIBPA VP1926 1926 6-210 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002329646 e6btmF2 002987887 Q87JY6_nD1 Q87JY6 Q87JY6_VIBPA VPA0112 3191 6-575 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000011477 e1s4bP1 002987888 Q87JY6_nD2 Q87JY6 Q87JY6_VIBPA VPA0112 3191 576-615 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001790185 e5hdtA1 002987889 Q87KK6_nD1 Q87KK6 Q87KK6_VIBPA VP2971 2970 1-105 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002987890 Q87IS5_nD1 Q87IS5 Q87IS5_VIBPA VPA0531 3610 11-175 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002516467 e6nwoD1 002987891 Q87IS5_nD2 Q87IS5 Q87IS5_VIBPA VPA0531 3610 176-275 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670618 e6swiA1 002987892 Q87J59_nD3 Q87J59 Q87J59_VIBPA VPA0394 HlyD family secretion protein 3473 106-225 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001509019 e4dk1B4 002987893 Q87J59_nD4 Q87J59 Q87J59_VIBPA VPA0394 HlyD family secretion protein 3473 56-70,261-345 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145751 e3lnnA2 002987894 Q87J59_nD2 Q87J59 Q87J59_VIBPA VPA0394 HlyD family secretion protein 3473 71-105,226-260 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002987895 Q87J59_nD1 Q87J59 Q87J59_VIBPA VPA0394 HlyD family secretion protein 3473 31-55 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001632110 e4dk0A4 002987896 Q87IE2_nD2 Q87IE2 Q87IE2_VIBPA VPA0664 3743 46-60,151-668 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001769389 e4aiqA1 002987897 Q87IE2_nD1 Q87IE2 Q87IE2_VIBPA VPA0664 3743 31-150 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 002538943 e6ofrA2 002987898 Q87FS9_nD1 Q87FS9 Q87FS9_VIBPA VPA1599 PNPLA domain-containing protein 4678 1-275 f a.17 2007 2007.1 2007.1.19 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like 001380481 e4akfA2 002987899 Q87MW3_nD2 Q87MW3 Q87MW3_VIBPA VP2118 Superoxide dismutase 2118 91-199 f a.12 228 228.1 228.1.1 a+b three layers Fe,Mn superoxide dismutase (SOD)-C Fe,Mn superoxide dismutase (SOD)-C Fe,Mn superoxide dismutase (SOD)-C 000362901 e3esfB2 002987900 Q87MW3_nD1 Q87MW3 Q87MW3_VIBPA VP2118 Superoxide dismutase 2118 6-90 f a.7 192 192.3 192.3.1 alpha bundles Long alpha-hairpin Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), N-terminal domain 000060308 e1uesB1 002987901 Q87IC1_nD2 Q87IC1 Q87IC1_VIBPA VPA0685 3764 221-325 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001614409 e2r44A2 002987902 Q87IC1_nD1 Q87IC1 Q87IC1_VIBPA VPA0685 3764 6-220 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001614408 e2r44A1 002987903 Q87JJ1_nD1 Q87JJ1 Q87JJ1_VIBPA VPA0258 3337 6-170 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 000168843 e3dupA1 002987904 Q87IV8_nD3 Q87IV8 Q87IV8_VIBPA VPA0498 3577 111-135,256-355,556-585 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001546305 e2wopA3 002987905 Q87IV8_nD4 Q87IV8 Q87IV8_VIBPA VPA0498 3577 356-555 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523987 e4oerB4 002987906 Q87IV8_nD1 Q87IV8 Q87IV8_VIBPA VPA0498 3577 6-110 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000177170 e3nqoA1 002987907 Q87IV8_nD2 Q87IV8 Q87IV8_VIBPA VPA0498 3577 136-255 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 001389383 e4oerB2 002987908 Q87IV1_nD1 Q87IV1 Y4505_VIBPA VPA0505 Probable phosphatase VPA0505 3584 1-245 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008707 e1m65A1 002987909 Q87HX2_nD1 Q87HX2 FTHS_VIBPA VPA0834 fhs Formate--tetrahydrofolate ligase 3913 1-150,171-580 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000223683 e4jimA1 002987910 Q87I11_nD1 Q87I11 ACCD2_VIBPA VPA0795 accD2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 2 3874 26-280 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000011409 e2f9yB1 002987911 Q87NY5_nD1 Q87NY5 Q87NY5_VIBPA VP1733 TPR_REGION domain-containing protein 1733 6-190 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001181805 e4di3C2 002987912 Q87HC2_nD3 Q87HC2 Q87HC2_VIBPA VPA1043 FHA domain-containing protein 4122 331-375 f a.8 165 165.3 165.3.1 alpha duplicates or obligate multimers Dimerisation interlock Phenylalanine zipper Phenylalanine zipper 000004307 e1q2hA1 002987913 Q87HC2_nD2 Q87HC2 Q87HC2_VIBPA VPA1043 FHA domain-containing protein 4122 206-330,381-398 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002987914 Q87HC2_nD1 Q87HC2 Q87HC2_VIBPA VPA1043 FHA domain-containing protein 4122 1-110 f a.3 73 73.1 73.1.1 beta sandwiches SMAD/FHA domain SMAD/FHA domain SMAD/FHA domain 002607838 e6l9wE1 002987915 Q87S88_nD1 Q87S88 Q87S88_VIBPA VP0536 Peptidyl-prolyl cis-trans isomerase 536 1-70,131-143 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000006498 e1ix5A1 002987916 Q87S88_nD2 Q87S88 Q87S88_VIBPA VP0536 Peptidyl-prolyl cis-trans isomerase 536 71-130 f a.11 284 284.4 284.4.1 a+b two layers FKBP-like Archaeal FKBP insertion domain Archaeal FKBP insertion domain 002036627 e5i7pA2 002987917 Q87JK3_nD1 Q87JK3 Q87JK3_VIBPA VPA0246 Peptidase_M14 domain-containing protein 3325 31-400 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001837030 e4a37B1 002987918 Q87SH0_nD2 Q87SH0 Q87SH0_VIBPA VP0454 ftsI Peptidoglycan D,D-transpeptidase FtsI 454 71-115,186-230,251-260 f a.5 3702 3702.1 3702.1.1 beta complex topology Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain 002033917 e5kshA2 002987919 Q87SH0_nD1 Q87SH0 Q87SH0_VIBPA VP0454 ftsI Peptidoglycan D,D-transpeptidase FtsI 454 116-185 f a.11 308 308.2 308.2.1 a+b two layers ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain 002546353 e6hr4A4 002987920 Q87SH0_nD3 Q87SH0 Q87SH0_VIBPA VP0454 ftsI Peptidoglycan D,D-transpeptidase FtsI 454 261-590 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 002529431 e1qmeA4 002987921 Q87HN7_nD1 Q87HN7 Q87HN7_VIBPA VPA0926 Omp_AT domain-containing protein 4005 26-325 f a.1 5084 5084.3 5084.3.1 beta barrels Outer membrane meander beta-barrels Autotransporter Autotransporter 000000885 e1uynX1 002987922 Q87GJ2_nD1 Q87GJ2 Q87GJ2_VIBPA VPA1324 EAL domain-containing protein 4403 1-230 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141255 e5xgbA1 002987923 Q87MH3_nD1 Q87MH3 Q87MH3_VIBPA VP2282 DUF2066 domain-containing protein 2282 21-115 f a.11 872 872.9 872.9.1 a+b two layers Dodecin subunit-like Flagella basal-body protein flgT N-terminal domain Flagella basal-body protein flgT N-terminal domain 001005532 e3w1eA1 002987924 Q87MH3_nD2 Q87MH3 Q87MH3_VIBPA VP2282 DUF2066 domain-containing protein 2282 116-250 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 001005533 e3w1eA2 002987925 Q87MH3_nD3 Q87MH3 Q87MH3_VIBPA VP2282 DUF2066 domain-containing protein 2282 261-325 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 001293770 e4n8nB1 002987926 Q87HH3_nD3 Q87HH3 Q87HH3_VIBPA VPA0992 DUF11 domain-containing protein 4071 431-570 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001146638 e4jguA1 002987927 Q87HH3_nD4 Q87HH3 Q87HH3_VIBPA VPA0992 DUF11 domain-containing protein 4071 571-725 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001613 e1r4xA1 002987928 Q87HH3_nD1 Q87HH3 Q87HH3_VIBPA VPA0992 DUF11 domain-containing protein 4071 41-255 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001839921 e3jvfC1 002987929 Q87HH3_nD2 Q87HH3 Q87HH3_VIBPA VPA0992 DUF11 domain-containing protein 4071 256-430 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000162284 e2f1eA1 002987930 Q87HH3_nD5 Q87HH3 Q87HH3_VIBPA VPA0992 DUF11 domain-containing protein 4071 736-870 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001307870 e3fcgA1 002987931 Q87KV5_nD2 Q87KV5 Q87KV5_VIBPA VP2870 DUF4871 domain-containing protein 2869 36-155 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002103527 e5t7aA1 002987932 Q87KV5_nD1 Q87KV5 Q87KV5_VIBPA VP2870 DUF4871 domain-containing protein 2869 6-30 f a.21 6106 6106.1 6106.1.1 extended segments Photosystem II protein Y, psbY Photosystem II protein Y, psbY Photosystem II protein Y, psbY 002097769 e5mx2R1 002987933 Q87FL0_nD1 Q87FL0 Q87FL0_VIBPA VPA1669 4748 21-113 f a.11 331 331.5 331.5.1 a+b two layers TBP-like TT1751-like TT1751-like 002814317 e7tj1D1 002987934 Q87JM7_nD1 Q87JM7 Q87JM7_VIBPA VPA0221 Carbonic anhydrase 3300 21-239 f a.2 62 62.1 62.1.1 beta meanders Carbonic anhydrase Carbonic anhydrase Carbonic anhydrase 001930884 e5hpjA1 002987935 Q87T18_nD3 Q87T18 Q87T18_VIBPA VP0252 252 161-290,321-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002987936 Q87T18_nD2 Q87T18 Q87T18_VIBPA VP0252 252 46-160,291-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002121138 e5k5tA3 002987937 Q87T18_nD1 Q87T18 Q87T18_VIBPA VP0252 252 1-45 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002647093 e7ce1K1 002987938 Q87LS7_nD2 Q87LS7 Q87LS7_VIBPA VP2534 ffh Signal recognition particle protein 2534 91-440 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002818175 e7obrx2 002987939 Q87LS7_nD1 Q87LS7 Q87LS7_VIBPA VP2534 ffh Signal recognition particle protein 2534 1-90 f a.7 181 181.1 181.1.1 alpha bundles Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins 001159866 e3dm5A6 002987940 Q87IS6_nD2 Q87IS6 Q87IS6_VIBPA VPA0530 3609 171-235 f a.6 3542 3542.1 3542.1.1 alpha arrays Presenilin family intramembrane aspartate proteases Presenilin family intramembrane aspartate proteases Presenilin family intramembrane aspartate proteases 002429565 e6idfB1 002987941 Q87IS6_nD1 Q87IS6 Q87IS6_VIBPA VPA0530 3609 11-170 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002582149 e6e9cA1 002987942 Q87LP3_nD1 Q87LP3 ACPS_VIBPA VP2568 acpS Holo-[acyl-carrier-protein] synthase 2567 1-125 f a.12 301 301.8 301.8.1 a+b three layers Bacillus chorismate mutase-like 4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 000414018 e3qmnO1 002987943 Q87RI2_nD1 Q87RI2 Q87RI2_VIBPA VP0812 DUF1538 domain-containing protein 812 6-60 f a.10 5076 5076.2 5076.2.1 alpha complex topology Mitochondrial ADP/ATP carrier-like Putative sulfate permease CysZ Putative sulfate permease CysZ 002330435 e6d9zC1 002987944 Q87RI2_nD2 Q87RI2 Q87RI2_VIBPA VP0812 DUF1538 domain-containing protein 812 61-250 f a.10 3950 3950.1 3950.1.1 alpha complex topology Bacterial vitamin C transporter UlaA/SgaT Bacterial vitamin C transporter UlaA/SgaT Bacterial vitamin C transporter UlaA/SgaT 001503839 e4rp9A1 002987945 Q87RC9_nD1 Q87RC9 Q87RC9_VIBPA VP0868 868 26-145 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001843723 e5f55A3 002987946 Q87Q26_nD1 Q87Q26 RLMF_VIBPA VP1324 rlmF Ribosomal RNA large subunit methyltransferase F 1324 46-260,286-375 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002392887 e6du4A1 002987947 Q87IT2_nD2 Q87IT2 Q87IT2_VIBPA VPA0524 3603 91-195 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000297781 e1z7pA1 002987948 Q87IT2_nD1 Q87IT2 Q87IT2_VIBPA VPA0524 3603 1-90 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000161988 e2hlsA1 002987949 Q87SS9_nD1 Q87SS9 LEUC_VIBPA VP0343 leuC 3-isopropylmalate dehydratase large subunit 343 1-160 f a.17 7542 7542.1 7542.1.1 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain 002482578 e1c96A4 002987950 Q87SS9_nD2 Q87SS9 LEUC_VIBPA VP0343 leuC 3-isopropylmalate dehydratase large subunit 343 161-285 f a.17 7542 7542.1 7542.1.2 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain II 002483244 e1l5jB6 002987951 Q87SS9_nD3 Q87SS9 LEUC_VIBPA VP0343 leuC 3-isopropylmalate dehydratase large subunit 343 286-465 f a.17 7542 7542.1 7542.1.1 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain 002483191 e4kp2A1 002987952 Q87QN2_nD1 Q87QN2 Q87QN2_VIBPA VP1117 Heat shock protein HtpX 1117 11-50 f a.11 308 308.1 308.1.1 a+b two layers ClpS-like ClpS-related ClpS-related 000362517 e3gq1A1 002987953 Q87TR4_nD1 Q87TR4 RNPA_VIBPA VP0004 rnpA Ribonuclease P protein component 4 6-115 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001140604 e4jg4A1 002987954 Q87M28_nD5 Q87M28 Q87M28_VIBPA VP2430 Pilus assembly protein PilZ 2430 466-580 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000142349 e2l74A1 002987955 Q87M28_nD2 Q87M28 Q87M28_VIBPA VP2430 Pilus assembly protein PilZ 2430 56-115 f 002987956 Q87M28_nD1 Q87M28 Q87M28_VIBPA VP2430 Pilus assembly protein PilZ 2430 1-55,91-105 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000166741 e2rn7A1 002987957 Q87M28_nD4 Q87M28 Q87M28_VIBPA VP2430 Pilus assembly protein PilZ 2430 126-145,266-465,586-780 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002099203 e5gpoB1 002987958 Q87M28_nD3 Q87M28 Q87M28_VIBPA VP2430 Pilus assembly protein PilZ 2430 146-265 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000000077 e2rdeA1 002987959 Q87SZ8_nD2 Q87SZ8 RL6_VIBPA VP0272 rplF 50S ribosomal protein L6 272 81-170 f a.11 318 318.1 318.1.1 a+b two layers Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 001860029 e5j8aDG2 002987960 Q87SZ8_nD1 Q87SZ8 RL6_VIBPA VP0272 rplF 50S ribosomal protein L6 272 1-80 f a.11 318 318.1 318.1.1 a+b two layers Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 002703806 e7jilF2 002987961 Q87T64_nD1 Q87T64 Q87T64_VIBPA VP0206 206 1-265 f a.13 246 246.1 246.1.1 a+b four layers Carbon-nitrogen hydrolase-like Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 000955913 e2vhhC1 002987962 Q87KH4_nD1 Q87KH4 GPPA_VIBPA VP3003 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 3002 6-130 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000115713 e1u6zB2 002987963 Q87KH4_nD2 Q87KH4 GPPA_VIBPA VP3003 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 3002 131-310 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002554778 e6pbzA1 002987964 Q87KH4_nD3 Q87KH4 GPPA_VIBPA VP3003 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 3002 311-495 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 002554780 e6pbzA3 002987965 Q87K97_nD2 Q87K97 Q87K97_VIBPA VPA0001 Translation elongation factor 3080 366-470 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001945706 e5ubfB2 002987966 Q87K97_nD1 Q87K97 Q87K97_VIBPA VPA0001 Translation elongation factor 3080 11-365 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001945704 e5ubdB1 002987967 Q87K97_nD4 Q87K97 Q87K97_VIBPA VPA0001 Translation elongation factor 3080 596-655 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001068666 e3ucsB1 002987968 Q87K97_nD3 Q87K97 Q87K97_VIBPA VPA0001 Translation elongation factor 3080 531-590 f a.11 284 284.1 284.1.3 a+b two layers FKBP-like FKBP-like WNK1 autoinhibitory domain 002080121 e5g3qA1 002987969 Q87IU2_nD1 Q87IU2 Q87IU2_VIBPA VPA0514 3593 6-223 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002642997 e6t1zA1 002987970 Q87FQ5_nD4 Q87FQ5 MALT_VIBPA VPA1623 malT HTH-type transcriptional regulator MalT 4702 341-810 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002814206 e7qe7O1 002987971 Q87FQ5_nD3 Q87FQ5 MALT_VIBPA VPA1623 malT HTH-type transcriptional regulator MalT 4702 251-340 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001231073 e4m9sD6 002987972 Q87FQ5_nD1 Q87FQ5 MALT_VIBPA VPA1623 malT HTH-type transcriptional regulator MalT 4702 1-185 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002448607 e6mfvA2 002987973 Q87FQ5_nD5 Q87FQ5 MALT_VIBPA VPA1623 malT HTH-type transcriptional regulator MalT 4702 816-900 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 002552682 e6kjuB2 002987974 Q87FQ5_nD2 Q87FQ5 MALT_VIBPA VPA1623 malT HTH-type transcriptional regulator MalT 4702 186-250 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002393117 e6azyA5 002987975 Q87SX7_nD2 Q87SX7 Q87SX7_VIBPA VP0295 295 1-205,376-574 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002987976 Q87SX7_nD1 Q87SX7 Q87SX7_VIBPA VP0295 295 206-280 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 001824299 e4ys2A1 002987977 Q87SX7_nD3 Q87SX7 Q87SX7_VIBPA VP0295 295 281-365 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 000986044 e4gvlC1 002987978 Q87PP2_nD1 Q87PP2 Q87PP2_VIBPA VP1459 1459 6-400 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002659620 e6yv8A1 002987979 Q87J64_nD4 Q87J64 Q87J64_VIBPA VPA0389 Bac_rhamnosid6H domain-containing protein 3468 651-710 f a.3 12 12.6 12.6.1 beta sandwiches Glycosyl hydrolase domain-like Glycoside hydrolase family 127 middle domain-related Glycoside hydrolase family 127 middle domain-related 001559108 e4zlfA3 002987980 Q87J64_nD3 Q87J64 Q87J64_VIBPA VPA0389 Bac_rhamnosid6H domain-containing protein 3468 226-650,691-730 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 000004508 e2jg0A1 002987981 Q87J64_nD1 Q87J64 Q87J64_VIBPA VPA0389 Bac_rhamnosid6H domain-containing protein 3468 36-160 f a.3 3597 3597.1 3597.1.1 beta sandwiches Starch specific carbohydrate-binding modules Starch specific carbohydrate-binding modules Starch specific carbohydrate-binding modules 002060448 e5x5sA1 002987982 Q87J64_nD6 Q87J64 Q87J64_VIBPA VPA0389 Bac_rhamnosid6H domain-containing protein 3468 811-959 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002068365 e5x7gA1 002987983 Q87J64_nD5 Q87J64 Q87J64_VIBPA VPA0389 Bac_rhamnosid6H domain-containing protein 3468 731-805 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002426886 e6i6rB3 002987984 Q87J64_nD2 Q87J64 Q87J64_VIBPA VPA0389 Bac_rhamnosid6H domain-containing protein 3468 161-225 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002443964 e6i60B4 002987985 Q87HP9_nD1 Q87HP9 Q87HP9_VIBPA VPA0914 DUF1007 family protein 3993 1-65 f a.11 809 809.1 809.1.1 a+b two layers BLIP-like beta-lactamase-inhibitor protein, BLIP beta-lactamase-inhibitor protein, BLIP 000360186 e3gmxB2 002987986 Q87H04_nD1 Q87H04 Q87H04_VIBPA VPA1161 PAS domain-containing protein 4240 1-145 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001678422 e4zp4D1 002987987 Q87P05_nD1 Q87P05 Q87P05_VIBPA VP1713 TolC family protein 1713 26-85,111-460 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 001319990 e4mt0A1 002987988 Q87SX9_nD2 Q87SX9 CYSN_VIBPA VP0293 cysN Sulfate adenylyltransferase subunit 1 293 241-330 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000143 e1zunB1 002987989 Q87SX9_nD1 Q87SX9 CYSN_VIBPA VP0293 cysN Sulfate adenylyltransferase subunit 1 293 6-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001563515 e4zkdA3 002987990 Q87SX9_nD4 Q87SX9 CYSN_VIBPA VP0293 cysN Sulfate adenylyltransferase subunit 1 293 446-470 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002150941 e6f1yj1 002987991 Q87SX9_nD3 Q87SX9 CYSN_VIBPA VP0293 cysN Sulfate adenylyltransferase subunit 1 293 331-435 f a.1 1 1.1 1.1.8 beta barrels cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain 001313874 e4cxhA2 002987992 Q87L06_nD1 Q87L06 MIAA_VIBPA VP2818 miaA tRNA dimethylallyltransferase 2817 116-185 f a.6 3949 3949.1 3949.1.1 alpha arrays tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 001527978 e2zxuA2 002987993 Q87L06_nD2 Q87L06 MIAA_VIBPA VP2818 miaA tRNA dimethylallyltransferase 2817 1-115,186-310 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000198685 e3crmA1 002987994 Q87MQ7_nD1 Q87MQ7 Q87MQ7_VIBPA VP2174 2174 1-125 f a.12 301 301.7 301.7.1 a+b three layers Bacillus chorismate mutase-like YjgF-like YjgF-like 000079357 e1x25B1 002987995 Q87PI3_nD1 Q87PI3 Q87PI3_VIBPA VP1519 Cystatin domain-containing protein 1519 51-95 f a.11 295 295.1 295.1.1 a+b two layers ssDNA-binding transcriptional regulator domain-like ssDNA-binding transcriptional regulator domain ssDNA-binding transcriptional regulator domain 002494924 e6bp6A1 002987996 Q87KX4_nD1 Q87KX4 Q87KX4_VIBPA VP2850 PhaC PHA synthase 2849 26-190 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 001285582 e4k6rA2 002987997 Q87R06_nD1 Q87R06 Q87R06_VIBPA VP0992 Pyruvate formate-lyase-activating enzyme 992 6-245 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000350807 e3c8fA1 002987998 Q87LJ5_nD2 Q87LJ5 Q87LJ5_VIBPA VP2617 proC Pyrroline-5-carboxylate reductase 2616 166-265 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000307084 e2gr9A1 002987999 Q87LJ5_nD1 Q87LJ5 Q87LJ5_VIBPA VP2617 proC Pyrroline-5-carboxylate reductase 2616 1-165 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001712332 e5bseI2 002988000 Q87KZ5_nD1 Q87KZ5 GPMI_VIBPA VP2829 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2828 76-310 f a.17 7554 7554.1 7554.1.1 a/b three-layered sandwiches 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 000375816 e3igzB2 002988001 Q87KZ5_nD2 Q87KZ5 GPMI_VIBPA VP2829 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2828 6-75,311-510 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 002077660 e5vpuA2 002988002 Q87PB4_nD1 Q87PB4 Q87PB4_VIBPA VP1603 DUF2835 family protein 1603 1-70 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000142631 e3oyyA1 002988003 Q87S06_nD1 Q87S06 Q87S06_VIBPA VP0618 Na_H_antiporter domain-containing protein 618 6-475 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001549199 e4r0cD1 002988004 Q87Q06_nD1 Q87Q06 Q87Q06_VIBPA VP1344 1344 41-355 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002988005 Q87JU3_nD1 Q87JU3 Q87JU3_VIBPA VPA0155 Protein TonB 3234 121-200 f a.11 272 272.1 272.1.1 a+b two layers TolA/TonB C-terminal domain TolA/TonB C-terminal domain TolA/TonB C-terminal domain 002534572 e6i97D1 002988006 Q87SG2_nD1 Q87SG2 Q87SG2_VIBPA VP0462 ftsQ Cell division protein FtsQ 462 6-45 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001436286 e4v6mAZ1 002988007 Q87SG2_nD2 Q87SG2 Q87SG2_VIBPA VP0462 ftsQ Cell division protein FtsQ 462 51-125 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 002429636 e5z2wA1 002988008 Q87SG2_nD3 Q87SG2 Q87SG2_VIBPA VP0462 ftsQ Cell division protein FtsQ 462 126-250 f a.11 6020 6020.1 6020.1.1 a+b two layers Beta domain of DivIB/FtsQ Beta domain of DivIB/FtsQ Beta domain of DivIB/FtsQ 002429637 e5z2wA2 002988009 Q87PI4_nD1 Q87PI4 Q87PI4_VIBPA VP1518 SMI1/KNR4 family protein 1518 6-123 f a.11 4205 4205.1 4205.1.1 a+b two layers SMI1/KNR4-like SMI1/KNR4-like SMI1/KNR4-like 002575389 e6qbrA1 002988010 Q79YY0_nD1 Q79YY0 Q79YY0_VIBPA VP1553 1553 46-70 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002632561 e6pqvY1 002988011 Q87FN1_nD2 Q87FN1 Q87FN1_VIBPA VPA1648 DUF945 domain-containing protein 4727 216-325,346-385,546-565 f a.12 881 881.1 881.1.1 a+b three layers Mog1p/PsbP-like Mog1p/PsbP-like Mog1p/PsbP-like 002771892 e7cu9B1 002988012 Q87FN1_nD1 Q87FN1 Q87FN1_VIBPA VPA1648 DUF945 domain-containing protein 4727 31-215 f a.12 881 881.3 881.3.1 a+b three layers Mog1p/PsbP-like Outer membrane-associated lipoprotein TP0453 Outer membrane-associated lipoprotein TP0453 000146734 e3k8gA1 002988013 Q87FN1_nD3 Q87FN1 Q87FN1_VIBPA VPA1648 DUF945 domain-containing protein 4727 326-345,391-505 f a.12 881 881.3 881.3.1 a+b three layers Mog1p/PsbP-like Outer membrane-associated lipoprotein TP0453 Outer membrane-associated lipoprotein TP0453 000146734 e3k8gA1 002988014 Q87FN1_nD4 Q87FN1 Q87FN1_VIBPA VPA1648 DUF945 domain-containing protein 4727 511-545 f a.11 331 331.3 331.3.1 a+b two layers TBP-like Bet v1-like Bet v1-like 002454831 e5zykA1 002988015 Q87TF2_nD1 Q87TF2 Q87TF2_VIBPA VP0117 117 66-220 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002472915 e6d8vA1 002988016 Q87TF2_nD6 Q87TF2 Q87TF2_VIBPA VP0117 117 591-848 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002519516 e6hq7A1 002988017 Q87TF2_nD2 Q87TF2 Q87TF2_VIBPA VP0117 117 11-35,341-365 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002988018 Q87TF2_nD5 Q87TF2 Q87TF2_VIBPA VP0117 117 426-590 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002988019 Q87TF2_nD3 Q87TF2 Q87TF2_VIBPA VP0117 117 41-65,221-340 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002988020 Q87TF2_nD4 Q87TF2 Q87TF2_VIBPA VP0117 117 366-425 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002988021 Q87HS4_nD1 Q87HS4 Q87HS4_VIBPA VPA0882 3961 26-155 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001760520 e3fhhA1 002988022 Q87HS4_nD2 Q87HS4 Q87HS4_VIBPA VPA0882 3961 156-693 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001789763 e3v8xA1 002988023 Q87JM1_nD1 Q87JM1 Q87JM1_VIBPA VPA0228 ATPase 3307 46-110 f a.11 304 304.7 304.7.1 a+b two layers Alpha-beta plaits Protease propeptides/inhibitors Protease propeptides/inhibitors 001125408 e3whiA2 002988024 Q87TA2_nD1 Q87TA2 Q87TA2_VIBPA VP0168 TonB-dependent receptor 168 36-170 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001760805 e2hdiA2 002988025 Q87TA2_nD2 Q87TA2 Q87TA2_VIBPA VP0168 TonB-dependent receptor 168 171-865 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001828699 e5fr8A2 002988026 Q87NF1_nD1 Q87NF1 Q87NF1_VIBPA VP1917 DUF1513 domain-containing protein 1917 26-360 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 002084840 e5n1aB2 002988027 Q87QG1_nD2 Q87QG1 Q87QG1_VIBPA VP1188 1188 111-250 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 000318378 e2eixB2 002988028 Q87QG1_nD1 Q87QG1 Q87QG1_VIBPA VP1188 1188 6-110 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000021396 e1gvhA1 002988029 Q87QG1_nD3 Q87QG1 Q87QG1_VIBPA VP1188 1188 256-350 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006115 e2piaA2 002988030 Q87HY2_nD1 Q87HY2 Q87HY2_VIBPA VPA0824 3903 11-235 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004911 e1pw4A1 002988031 Q87HY2_nD2 Q87HY2 Q87HY2_VIBPA VPA0824 3903 236-450 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001566580 e4w6vA2 002988032 Q87NT1_nD1 Q87NT1 Q87NT1_VIBPA VP1787 1787 6-30 f a.6 101 101.1 101.1.6 alpha arrays HTH HTH TrpR 001035813 e2lvsA2 002988033 Q87NT1_nD2 Q87NT1 Q87NT1_VIBPA VP1787 1787 36-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002032403 e5ui5I2 002988034 Q87NT1_nD3 Q87NT1 Q87NT1_VIBPA VP1787 1787 116-280 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002784392 e7ouhB1 002988035 Q87P71_nD1 Q87P71 Q87P71_VIBPA VP1647 Citrate synthase 1647 21-360 f a.10 172 172.1 172.1.1 alpha complex topology Citrate synthase-like Citrate synthase Citrate synthase 002670383 e6s6fB1 002988036 Q79YU9_nD1 Q79YU9 Q79YU9_VIBPA VPA0266 Basal-body rod modification protein FlgD 3345 66-95 f a.8 4207 4207.1 4207.1.1 alpha duplicates or obligate multimers Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21) 002721645 e6w1sW1 002988037 Q79YU9_nD2 Q79YU9 Q79YU9_VIBPA VPA0266 Basal-body rod modification protein FlgD 3345 111-190 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001780764 e3osvB1 002988038 Q79YU9_nD3 Q79YU9 Q79YU9_VIBPA VPA0266 Basal-body rod modification protein FlgD 3345 101-110,191-225 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001779558 e3c12A2 002988039 Q87IU7_nD1 Q87IU7 Q87IU7_VIBPA VPA0509 3588 1-385 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002475205 e6f2wA1 002988040 Q87TR6_nD3 Q87TR6 MNME_VIBPA VP0002 mnmE tRNA modification GTPase MnmE 2 216-375 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001210565 e4a9aA7 002988041 Q87TR6_nD1 Q87TR6 MNME_VIBPA VP0002 mnmE tRNA modification GTPase MnmE 2 1-120 f a.11 304 304.107 304.107.1 a+b two layers Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain 001835180 e3gehA4 002988042 Q87TR6_nD2 Q87TR6 MNME_VIBPA VP0002 mnmE tRNA modification GTPase MnmE 2 121-215,381-453 f a.7 601 601.25 601.25.1 alpha bundles Four-helical up-and-down bundle TrmE connector domain TrmE connector domain 001167764 e3geiA9 002988043 Q87G98_nD2 Q87G98 Q87G98_VIBPA VPA1419 4498 171-290 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 001903983 e1yb4B3 002988044 Q87G98_nD1 Q87G98 Q87G98_VIBPA VPA1419 4498 6-170 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002651217 e6sm7C1 002988045 Q87NM8_nD1 Q87NM8 Q87NM8_VIBPA VP1840 Phage_int_SAM_5 domain-containing protein 1840 16-195 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 000180488 e3n0uA1 002988046 Q87LF0_nD1 Q87LF0 Q87LF0_VIBPA VP2662 2661 6-150 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002702525 e7d06K1 002988047 Q87KB1_nD1 Q87KB1 Q87KB1_VIBPA VP3066 3065 26-240 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002988048 Q87J74_nD1 Q87J74 Q87J74_VIBPA VPA0379 3458 6-60 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002988049 Q87J74_nD2 Q87J74 Q87J74_VIBPA VPA0379 3458 61-140 f a.1 2 2.24 2.24.1 beta barrels OB-fold probable receptor YhhM probable receptor YhhM 000140409 e2l0cA1 002988050 Q87H30_nD1 Q87H30 Q87H30_VIBPA VPA1135 4214 1-175 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 000162485 e2ic7A1 002988051 Q87GW4_nD1 Q87GW4 Q87GW4_VIBPA VPA1201 Cytochrome c-type protein 4280 21-185 f a.19 139 139.1 139.1.1 few secondary structure elements Multiheme cytochromes Cytochrome c3-like Cytochrome c3-like 001644188 e2vr0F1 002988052 Q87NU1_nD1 Q87NU1 Q87NU1_VIBPA VP1777 1777 1-265 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002393120 e6b4rA2 002988053 Q87NU1_nD2 Q87NU1 Q87NU1_VIBPA VP1777 1777 266-365 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002132546 e5iuvB1 002988054 Q87RJ2_nD1 Q87RJ2 Q87RJ2_VIBPA VP0802 802 6-469 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001734923 e5dl5A1 002988055 Q87GC0_nD1 Q87GC0 Q87GC0_VIBPA VPA1397 4476 6-160 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 001712687 e5egkE1 002988056 Q87NX8_nD1 Q87NX8 Q87NX8_VIBPA VP1740 Signal peptidase I 1740 1-50 f a.7 3826 3826.1 3826.1.1 alpha bundles Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) 001871271 e5lcyB1 002988057 Q87KY0_nD1 Q87KY0 Q87KY0_VIBPA VP2844 PHB domain-containing protein 2843 46-80 f a.3 3529 3529.1 3529.1.1 beta sandwiches Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain 001434207 e4v60I2 002988058 Q87KY0_nD2 Q87KY0 Q87KY0_VIBPA VP2844 PHB domain-containing protein 2843 81-190,246-275 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000005771 e1winA1 002988059 Q87KY0_nD3 Q87KY0 Q87KY0_VIBPA VP2844 PHB domain-containing protein 2843 276-395 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002330459 e6fkfp1 002988060 Q87N74_nD1 Q87N74 Q87N74_VIBPA VP2001 N-acetyltransferase domain-containing protein 2001 6-160 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000163797 e2ozhA1 002988061 Q87Q91_nD4 Q87Q91 Q87Q91_VIBPA VP1259 1259 506-590 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001948970 e5ltjA2 002988062 Q87Q91_nD3 Q87Q91 Q87Q91_VIBPA VP1259 1259 336-505 f a.6 4156 4156.1 4156.1.1 alpha arrays Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like 002456942 e6ff7q2 002988063 Q87Q91_nD1 Q87Q91 Q87Q91_VIBPA VP1259 1259 1-165 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002703075 e7dcpx1 002988064 Q87Q91_nD6 Q87Q91 Q87Q91_VIBPA VP1259 1259 631-784 f 002988065 Q87Q91_nD5 Q87Q91 Q87Q91_VIBPA VP1259 1259 591-630 f a.2 64 64.5 64.5.1 beta meanders WW domain-like Connector region of RNA helicase HrpB Connector region of RNA helicase HrpB 002485688 e6eudA6 002988066 Q87Q91_nD2 Q87Q91 Q87Q91_VIBPA VP1259 1259 166-335 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002406136 e5vhaA2 002988067 P0A308_nD1 P0A308 ATPL_VIBPA VP3074 atpE ATP synthase subunit c 3073 6-75 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 002824855 e7p3wO1 002988068 Q87R53_nD1 Q87R53 Q87R53_VIBPA VP0945 DUF1244 domain-containing protein 945 21-115 f a.8 4245 4245.1 4245.1.1 alpha duplicates or obligate multimers SMc04008-like SMc04008-like SMc04008-like 000170157 e3fybA1 002988069 Q87P40_nD1 Q87P40 Q87P40_VIBPA VP1678 1678 1-310 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002320389 e5xb6H1 002988070 Q87RF9_nD1 Q87RF9 Q87RF9_VIBPA VP0838 seqA Negative modulator of initiation of replication 838 1-35 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 001167933 e1u9pA3 002988071 Q87RF9_nD2 Q87RF9 Q87RF9_VIBPA VP0838 seqA Negative modulator of initiation of replication 838 68-180 f a.6 110 110.2 110.2.1 alpha arrays DEATH domain Replication modulator SeqA-C Replication modulator SeqA-C 000154543 e3sk7A1 002988072 Q87QD4_nD1 Q87QD4 RSUA_VIBPA VP1215 rsuA Ribosomal small subunit pseudouridine synthase A 1215 1-55 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 000006221 e1kskA2 002988073 Q87QD4_nD2 Q87QD4 RSUA_VIBPA VP1215 rsuA Ribosomal small subunit pseudouridine synthase A 1215 56-230 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000005395 e1vioA1 002988074 Q87GX9_nD1 Q87GX9 Q87GX9_VIBPA VPA1186 4265 21-185 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000141724 e2x27X1 002988075 Q87GX9_nD2 Q87GX9 Q87GX9_VIBPA VPA1186 4265 201-325 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002988076 Q87QY4_nD2 Q87QY4 Q87QY4_VIBPA VP1014 1014 171-350 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009748 e1jbkA1 002988077 Q87QY4_nD5 Q87QY4 Q87QY4_VIBPA VP1014 1014 656-750 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000003433 e1r6bX2 002988078 Q87QY4_nD1 Q87QY4 Q87QY4_VIBPA VP1014 1014 1-140 f a.6 148 148.1 148.1.2 alpha arrays Histone-like Histone-related double Clp-N 000003424 e1k6kA1 002988079 Q87QY4_nD3 Q87QY4 Q87QY4_VIBPA VP1014 1014 351-440 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000003436 e1qvrC3 002988080 Q87QY4_nD4 Q87QY4 Q87QY4_VIBPA VP1014 1014 441-655 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002088798 e5vyaC3 002988081 Q87NW0_nD1 Q87NW0 Q87NW0_VIBPA VP1758 Acetyltransferase 1758 1-129 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 002540217 e6pubA1 002988082 Q87G58_nD1 Q87G58 Q87G58_VIBPA VPA1459 Phosphate transport system permease protein PstA 4538 6-280 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001779670 e4xtcM1 002988083 Q87S60_nD1 Q87S60 Q87S60_VIBPA VP0564 564 26-279 f a.11 307 307.1 307.1.1 a+b two layers Hedgehog/DD-peptidase Hedgehog/DD-peptidase Hedgehog/DD-peptidase 000005589 e1tzpA1 002988084 Q87M05_nD1 Q87M05 RS15_VIBPA VP2453 rpsO 30S ribosomal protein S15 2453 1-89 f a.6 616 616.1 616.1.1 alpha arrays S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain 002093019 e5o5jO1 002988085 Q87QI9_nD1 Q87QI9 Q87QI9_VIBPA VP1160 1160 6-45 f a.21 5027 5027.1 5027.1.1 extended segments Preprotein translocase SecE subunit Preprotein translocase SecE subunit Preprotein translocase SecE subunit 000140954 e3mp7B1 002988086 Q87ML0_nD1 Q87ML0 Q87ML0_VIBPA VP2221 ccmC Heme exporter protein C 2221 11-235 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002542985 e6rkoA2 002988087 Q87K27_nD2 Q87K27 Q87K27_VIBPA VPA0071 S-(hydroxymethyl)glutathione dehydrogenase 3150 176-325 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001481249 e4rqtA2 002988088 Q87K27_nD1 Q87K27 Q87K27_VIBPA VPA0071 S-(hydroxymethyl)glutathione dehydrogenase 3150 1-175,326-380 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 000153738 e3ukoA1 002988089 Q87FS3_nD1 Q87FS3 Q87FS3_VIBPA VPA1605 Cytochrome b561 domain-containing protein 4684 6-129 f a.19 174 174.1 174.1.1 few secondary structure elements Tetraspanin transmembrane domain Tetraspanin transmembrane domain Tetraspanin transmembrane domain 001921571 e5tcxA2 002988090 Q87PN2_nD4 Q87PN2 Q87PN2_VIBPA VP1469 1469 451-514 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001159960 e3n0rA6 002988091 Q87PN2_nD3 Q87PN2 Q87PN2_VIBPA VP1469 1469 311-390 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001822146 e5ep1A1 002988092 Q87PN2_nD1 Q87PN2 Q87PN2_VIBPA VP1469 1469 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002072962 e5m7pB4 002988093 Q87PN2_nD2 Q87PN2 Q87PN2_VIBPA VP1469 1469 136-310 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002988094 Q87SF3_nD4 Q87SF3 CARB_VIBPA VP0471 carB Carbamoyl-phosphate synthase large chain 471 556-670 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 000100167 e1t36A4 002988095 Q87SF3_nD3 Q87SF3 CARB_VIBPA VP0471 carB Carbamoyl-phosphate synthase large chain 471 121-405,671-935 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000080656 e1t36A2 002988096 Q87SF3_nD1 Q87SF3 CARB_VIBPA VP0471 carB Carbamoyl-phosphate synthase large chain 471 6-120 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 000100185 e1a9xE5 002988097 Q87SF3_nD5 Q87SF3 CARB_VIBPA VP0471 carB Carbamoyl-phosphate synthase large chain 471 941-1055 f a.17 7543 7543.1 7543.1.1 a/b three-layered sandwiches Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like 000109485 e1a9xE6 002988098 Q87SF3_nD2 Q87SF3 CARB_VIBPA VP0471 carB Carbamoyl-phosphate synthase large chain 471 406-555 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000046093 e1a9xE1 002988099 Q87LV6_nD1 Q87LV6 GLUQ_VIBPA VP2502 gluQ Glutamyl-Q tRNA(Asp) synthetase 2502 1-260,281-294 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002539200 e2ja2A3 002988100 Q87Q77_nD2 Q87Q77 HUTH_VIBPA VP1273 hutH Histidine ammonia-lyase 1273 201-310,331-510 f a.6 602 602.1 602.1.1 alpha arrays L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like 000118948 e1gkmA1 002988101 Q87Q77_nD1 Q87Q77 HUTH_VIBPA VP1273 hutH Histidine ammonia-lyase 1273 1-200 f a.6 4952 4952.1 4952.1.1 alpha arrays L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like 000118947 e1gkmA2 002988102 Q79YT4_nD1 Q79YT4 Q79YT4_VIBPA VPA1552 4631 6-95 f a.7 3718 3718.1 3718.1.1 alpha bundles Flagellar protein fliT Flagellar protein fliT Flagellar protein fliT 001108989 e2g42A1 002988103 Q87RR1_nD1 Q87RR1 LIPA_VIBPA VP0716 lipA Lipoyl synthase 716 16-320 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001324174 e4u0pB1 002988104 Q87P50_nD3 Q87P50 Q87P50_VIBPA VP1668 Type 3 secretion system ATPase 1668 366-440 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 002450278 e6njpD3 002988105 Q87P50_nD1 Q87P50 Q87P50_VIBPA VP1668 Type 3 secretion system ATPase 1668 21-95 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001790386 e5b0oB2 002988106 Q87P50_nD2 Q87P50 Q87P50_VIBPA VP1668 Type 3 secretion system ATPase 1668 96-365 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002591325 e6rd9X1 002988107 Q87KQ3_nD1 Q87KQ3 RL7_VIBPA VP2923 rplL 50S ribosomal protein L7/L12 2922 1-35 f a.8 156 156.1 156.1.1 alpha duplicates or obligate multimers Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain Ribosomal protein L7/12, oligomerisation (N-terminal) domain 001435939 e4v6fDJ1 002988108 Q87KQ3_nD2 Q87KQ3 RL7_VIBPA VP2923 rplL 50S ribosomal protein L7/L12 2922 56-120 f a.11 308 308.1 308.1.1 a+b two layers ClpS-like ClpS-related ClpS-related 001430105 e4v4vB52 002988109 Q87QX3_nD1 Q87QX3 Q87QX3_VIBPA VP1026 RanBP2-type domain-containing protein 1026 1-70 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 001405794 e4w4mK1 002988110 Q87QX3_nD2 Q87QX3 Q87QX3_VIBPA VP1026 RanBP2-type domain-containing protein 1026 76-105 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001715231 e5fmfR2 002988111 Q87SC0_nD1 Q87SC0 Y504_VIBPA VP0504 UPF0246 protein VP0504 504 1-258 f a.17 7599 7599.1 7599.1.1 a/b three-layered sandwiches UPF0246 protein YaaA UPF0246 protein YaaA UPF0246 protein YaaA 001779576 e5cajA1 002988112 Q87N91_nD5 Q87N91 Q87N91_VIBPA VP1984 1984 296-430 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223631 e3jz3B3 002988113 Q87N91_nD2 Q87N91 Q87N91_VIBPA VP1984 1984 41-135 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000341202 e3cwfB1 002988114 Q87N91_nD1 Q87N91 Q87N91_VIBPA VP1984 1984 11-40,136-165 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 000004346 e2c2aA1 002988115 Q87N91_nD4 Q87N91 Q87N91_VIBPA VP1984 1984 221-295 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002988116 Q87N91_nD3 Q87N91 Q87N91_VIBPA VP1984 1984 166-220 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002988117 Q87IL6_nD1 Q87IL6 Q87IL6_VIBPA VPA0590 3669 1-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001296768 e4d26A1 002988118 Q87IL6_nD2 Q87IL6 Q87IL6_VIBPA VPA0590 3669 216-395 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002988119 Q87QV3_nD1 Q87QV3 Q87QV3_VIBPA VP1046 DUF72 domain-containing protein 1046 6-280 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000283944 e1ztvB1 002988120 Q87SH1_nD1 Q87SH1 Q87SH1_VIBPA VP0453 ftsL Cell division protein FtsL 453 6-85 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001758134 e3mudA2 002988121 Q87JQ0_nD1 Q87JQ0 Q87JQ0_VIBPA VPA0198 3277 6-45,266-290 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002644549 e6yufC2 002988122 Q87JQ0_nD2 Q87JQ0 Q87JQ0_VIBPA VPA0198 3277 46-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001005116 e4jgoB1 002988123 Q87JQ0_nD3 Q87JQ0 Q87JQ0_VIBPA VPA0198 3277 291-450 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002988124 Q87NH1_nD1 Q87NH1 Q87NH1_VIBPA VP1897 Capsule biosynthesis protein 1897 6-75 f a.11 265 265.1 265.1.1 a+b two layers RNA bacteriophage capsid protein RNA bacteriophage capsid protein RNA bacteriophage capsid protein 002659073 e6yfsAI1 002988125 Q87NM1_nD1 Q87NM1 Q87NM1_VIBPA VP1847 LprI domain-containing protein 1847 41-150 f a.7 3831 3831.1 3831.1.1 alpha bundles Secreted protein of unknown function DUF1311 Secreted protein of unknown function DUF1311 Secreted protein of unknown function DUF1311 002122152 e6ar7C1 002988126 Q87LA7_nD1 Q87LA7 Q87LA7_VIBPA VP2705 2704 46-109 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 000185990 e2ivwA1 002988127 Q87GI7_nD1 Q87GI7 Q87GI7_VIBPA VPA1329 4408 56-185 f a.6 636 636.1 636.1.1 alpha arrays SopE-like GEF domain SopE-like GEF domain SopE-like GEF domain 000003455 e1gzsB1 002988128 Q87K56_nD1 Q87K56 Q87K56_VIBPA VPA0042 Pirin family protein 3121 1-230 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000164207 e2p17A1 002988129 Q87N51_nD1 Q87N51 Q87N51_VIBPA VP2024 Adenylosuccinate lyase 2024 1-79 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 002043024 e3cymA3 002988130 Q87PB3_nD1 Q87PB3 Q87PB3_VIBPA VP1604 Aminopeptidase N 1604 11-195 f a.3 4081 4081.1 4081.1.1 beta sandwiches Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related 002067112 e5mfrA2 002988131 Q87PB3_nD2 Q87PB3 Q87PB3_VIBPA VP1604 Aminopeptidase N 1604 196-445 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001672683 e3b34A1 002988132 Q87PB3_nD3 Q87PB3 Q87PB3_VIBPA VP1604 Aminopeptidase N 1604 446-545 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002067113 e5mfrA3 002988133 Q87PB3_nD4 Q87PB3 Q87PB3_VIBPA VP1604 Aminopeptidase N 1604 546-865 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001672684 e3b34A2 002988134 Q87SN4_nD2 Q87SN4 Q87SN4_VIBPA VP0388 site-specific DNA-methyltransferase (adenine-specific) 388 156-480 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002322908 e5ybbB1 002988135 Q87SN4_nD1 Q87SN4 Q87SN4_VIBPA VP0388 site-specific DNA-methyltransferase (adenine-specific) 388 6-155 f a.6 3962 3962.1 3962.1.1 alpha arrays N-terminal helical domain in restriction-modification system methylation subunit-like N-terminal helical domain in restriction-modification system methylation subunit N-terminal helical domain in restriction-modification system methylation subunit 001550441 e3ufbA2 002988136 Q87IX6_nD7 Q87IX6 Q87IX6_VIBPA VPA0480 3559 671-715,801-855 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002988137 Q87IX6_nD6 Q87IX6 Q87IX6_VIBPA VPA0480 3559 716-800 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 001312389 e4k0eA8 002988138 Q87IX6_nD5 Q87IX6 Q87IX6_VIBPA VPA0480 3559 556-670 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834883 e4dntA3 002988139 Q87IX6_nD8 Q87IX6 Q87IX6_VIBPA VPA0480 3559 511-555,856-1040 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002709975 e6m49B1 002988140 Q87IX6_nD2 Q87IX6 Q87IX6_VIBPA VPA0480 3559 186-215,236-270 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002988141 Q87IX6_nD4 Q87IX6 Q87IX6_VIBPA VPA0480 3559 1-40,326-510 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002988142 Q87IX6_nD3 Q87IX6 Q87IX6_VIBPA VPA0480 3559 136-185,271-325 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834886 e4dntA6 002988143 Q87IX6_nD1 Q87IX6 Q87IX6_VIBPA VPA0480 3559 41-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834882 e4dntA2 002988144 Q87LT7_nD3 Q87LT7 Q87LT7_VIBPA VP2524 2524 146-560 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001891751 e5it5A1 002988145 Q87LT7_nD1 Q87LT7 Q87LT7_VIBPA VP2524 2524 6-60 f a.6 1112 1112.1 1112.1.1 alpha arrays MshE c-di-GMP-binding domain MshE c-di-GMP-binding domain MshE c-di-GMP-binding domain 002771394 e7lkmA2 002988146 Q87LT7_nD2 Q87LT7 Q87LT7_VIBPA VP2524 2524 61-140 f a.11 327 327.8 327.8.1 a+b two layers Alpha-lytic protease prodomain-like GSPII protein E N-terminal domain-like GSPII protein E N-terminal domain-like 001891393 e2d28C3 002988147 Q87G05_nD3 Q87G05 Q87G05_VIBPA VPA1515 histidine kinase 4594 196-255 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002988148 Q87G05_nD4 Q87G05 Q87G05_VIBPA VPA1515 histidine kinase 4594 256-315 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001389315 e4mt8A1 002988149 Q87G05_nD1 Q87G05 Q87G05_VIBPA VPA1515 histidine kinase 4594 1-40,171-195 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001177461 e3a0rA6 002988150 Q87G05_nD2 Q87G05 Q87G05_VIBPA VPA1515 histidine kinase 4594 41-160 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002988151 Q87G05_nD5 Q87G05 Q87G05_VIBPA VPA1515 histidine kinase 4594 316-455 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002625008 e6pajB1 002988152 Q87Q86_nD1 Q87Q86 Q87Q86_VIBPA VP1264 Superfamily II DNA and RNA helicase 1264 26-125 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102461 e1ofuY1 002988153 Q87GB7_nD2 Q87GB7 MALF_VIBPA VPA1400 malF Maltose/maltodextrin transport system permease protein MalF 4479 126-215 f a.14 4947 4947.1 4947.1.1 a+b complex topology barrel domain in MalF N-terminal region barrel domain in MalF N-terminal region barrel domain in MalF N-terminal region 001111045 e4ki0F2 002988154 Q87GB7_nD1 Q87GB7 MALF_VIBPA VPA1400 malF Maltose/maltodextrin transport system permease protein MalF 4479 26-70 f a.21 4274 4274.1 4274.1.1 extended segments Transmembrane helices in MalF N-terminal region Transmembrane helices in MalF N-terminal region Transmembrane helices in MalF N-terminal region 001164723 e3rlfF5 002988155 Q87GB7_nD3 Q87GB7 MALF_VIBPA VPA1400 malF Maltose/maltodextrin transport system permease protein MalF 4479 106-125,216-265 f a.14 4948 4948.1 4948.1.1 a+b complex topology linker domain in MalF N-terminal region linker domain in MalF N-terminal region linker domain in MalF N-terminal region 001111046 e4ki0F3 002988156 Q87GB7_nD4 Q87GB7 MALF_VIBPA VPA1400 malF Maltose/maltodextrin transport system permease protein MalF 4479 71-105,266-520 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001386964 e4jbwF3 002988157 Q87RG1_nD1 Q87RG1 Q87RG1_VIBPA VP0836 DUF2788 domain-containing protein 836 1-65 f a.7 3826 3826.1 3826.1.1 alpha bundles Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) 001684166 e4uigA1 002988158 Q87RH0_nD2 Q87RH0 Q87RH0_VIBPA VP0826 826 196-550 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009838 e1ct9A2 002988159 Q87RH0_nD1 Q87RH0 Q87RH0_VIBPA VP0826 826 1-190 f a.13 210 210.1 210.1.3 a+b four layers Ntn/PP2C Ntn Class II glutamine amidotransferases 000007837 e1ct9A1 002988160 Q87PX0_nD1 Q87PX0 Q87PX0_VIBPA VP1380 YjjI family glycine radical enzyme 1380 26-525 f a.16 2500 2500.1 2500.1.1 a/b barrels Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel 000009015 e1hk8A1 002988161 Q87LW4_nD1 Q87LW4 Y2494_VIBPA VP2494 UPF0231 protein VP2494 2494 1-120 f a.11 295 295.1 295.1.1 a+b two layers ssDNA-binding transcriptional regulator domain-like ssDNA-binding transcriptional regulator domain ssDNA-binding transcriptional regulator domain 000005792 e2nvnA1 002988162 Q87R76_nD1 Q87R76 Q87R76_VIBPA VP0922 Transporter 922 36-99 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002963 e3bzkA3 002988163 Q87G20_nD1 Q87G20 Q87G20_VIBPA VPA1497 4576 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002988164 Q87G20_nD2 Q87G20 Q87G20_VIBPA VPA1497 4576 91-160,266-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002988165 Q87G20_nD3 Q87G20 Q87G20_VIBPA VPA1497 4576 161-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600822 e3hhfA1 002988166 Q87TH7_nD3 Q87TH7 Q87TH7_VIBPA VP0092 GGDEF domain-containing protein 92 276-380 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002988167 Q87TH7_nD4 Q87TH7 Q87TH7_VIBPA VP0092 GGDEF domain-containing protein 92 381-555 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141053 e5m3cA1 002988168 Q87TH7_nD2 Q87TH7 Q87TH7_VIBPA VP0092 GGDEF domain-containing protein 92 136-275 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002552681 e6kjuB1 002988169 Q87TH7_nD5 Q87TH7 Q87TH7_VIBPA VP0092 GGDEF domain-containing protein 92 556-810 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002034028 e5m1tA1 002988170 Q87TH7_nD1 Q87TH7 Q87TH7_VIBPA VP0092 GGDEF domain-containing protein 92 6-135 f a.12 223 223.2 223.2.1 a+b three layers Profilin-like profilin-like profilin-like 002553536 e6hjmP1 002988171 Q87LB1_nD3 Q87LB1 Q87LB1_VIBPA VP2701 2700 146-574 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002408703 e5zfrC1 002988172 Q87LB1_nD1 Q87LB1 Q87LB1_VIBPA VP2701 2700 6-60 f a.6 1112 1112.1 1112.1.1 alpha arrays MshE c-di-GMP-binding domain MshE c-di-GMP-binding domain MshE c-di-GMP-binding domain 001891418 e5htlA1 002988173 Q87LB1_nD2 Q87LB1 Q87LB1_VIBPA VP2701 2700 66-145 f a.11 327 327.8 327.8.1 a+b two layers Alpha-lytic protease prodomain-like GSPII protein E N-terminal domain-like GSPII protein E N-terminal domain-like 001891419 e5htlA2 002988174 Q87HK1_nD2 Q87HK1 Q87HK1_VIBPA VPA0962 4041 131-275 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 002530147 e4pdeA2 002988175 Q87HK1_nD1 Q87HK1 Q87HK1_VIBPA VPA0962 4041 41-110 f a.11 221 221.10 221.10.1 a+b two layers beta-Grasp FdhD/NarQ beta-grasp fold domain FdhD/NarQ beta-grasp fold domain 002530146 e4pdeA1 002988176 Q87M55_nD4 Q87M55 Q87M55_VIBPA VP2403 Beta-galactosidase 2403 606-705 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002570561 e6sd0A4 002988177 Q87M55_nD3 Q87M55 Q87M55_VIBPA VP2403 Beta-galactosidase 2403 316-605 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000427085 e3ob8C5 002988178 Q87M55_nD5 Q87M55 Q87M55_VIBPA VP2403 Beta-galactosidase 2403 706-1020 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 002570560 e6sd0A3 002988179 Q87M55_nD2 Q87M55 Q87M55_VIBPA VP2403 Beta-galactosidase 2403 211-315 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000134241 e3gm8A3 002988180 Q87M55_nD1 Q87M55 Q87M55_VIBPA VP2403 Beta-galactosidase 2403 1-210 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002331601 e6cvmB4 002988181 Q87G57_nD1 Q87G57 Q87G57_VIBPA VPA1460 Phosphate transport system permease protein 4539 31-305 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000419604 e3puyG1 002988182 Q87LY9_nD2 Q87LY9 Q87LY9_VIBPA VP2469 MgtE domain-containing protein 2469 126-314 f a.8 5079 5079.1 5079.1.1 alpha duplicates or obligate multimers Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain 002101903 e5x9hA2 002988183 Q87LY9_nD1 Q87LY9 Q87LY9_VIBPA VP2469 MgtE domain-containing protein 2469 6-120 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000007273 e1pbjA1 002988184 Q87JK6_nD1 Q87JK6 Q87JK6_VIBPA VPA0243 3322 26-304 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001877661 e5l7jA2 002988185 Q87M47_nD3 Q87M47 Q87M47_VIBPA VP2411 2411 6-25,261-320 f a.21 5042 5042.1 5042.1.1 extended segments Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region 001252174 e4ev6E5 002988186 Q87M47_nD2 Q87M47 Q87M47_VIBPA VP2411 2411 141-260 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001817768 e3jc9Cb1 002988187 Q87M47_nD1 Q87M47 Q87M47_VIBPA VP2411 2411 81-140 f a.19 4120 4120.1 4120.1.1 few secondary structure elements Tim10/DDP Tim10/DDP Tim10/DDP 002665422 e7cgpJ1 002988188 Q87TK7_nD1 Q87TK7 Q87TK7_VIBPA VP0062 edd Phosphogluconate dehydratase 62 6-35,56-420 f a.6 4303 4303.1 4303.1.1 alpha arrays lvD/EDD N-terminal domain-like lvD/EDD N-terminal domain-like lvD/EDD N-terminal domain-like 002439691 e5ze4A2 002988189 Q87TK7_nD2 Q87TK7 Q87TK7_VIBPA VP0062 edd Phosphogluconate dehydratase 62 421-598 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000011420 e2gp4A2 002988190 Q87QN3_nD1 Q87QN3 BIOD_VIBPA VP1116 bioD ATP-dependent dethiobiotin synthetase BioD 1116 1-225 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009641 e1byiA1 002988191 Q87I91_nD3 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 381-525 f a.5 5090 5090.2 5090.2.1 beta complex topology Viral glycoprotein, central and dimerisation domains-like Immune inhibitor A metallopeptidase C-terminal domain Immune inhibitor A metallopeptidase C-terminal domain 001699702 e4yu6A3 002988192 Q87I91_nD7 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 881-975 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001488387 e4r84A1 002988193 Q87I91_nD4 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 526-695 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001296148 e4ci7B2 002988194 Q87I91_nD6 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 796-875 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001298749 e4m00A4 002988195 Q87I91_nD1 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 31-100 f a.4 207 207.2 207.2.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like 001389495 e4peuA1 002988196 Q87I91_nD2 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 146-380 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001699700 e4yu6A1 002988197 Q87I91_nD5 Q87I91 Q87I91_VIBPA VPA0715 Peptidase_M6 domain-containing protein 3794 696-790 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001018750 e4aqoA1 002988198 Q87PZ6_nD1 Q87PZ6 Q87PZ6_VIBPA VP1354 1354 21-105 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001558905 e4uu3A1 002988199 Q87KZ4_nD1 Q87KZ4 Q87KZ4_VIBPA VP2830 Rhodanese domain-containing protein 2829 36-140 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 002419124 e6mxvB2 002988200 Q87M80_nD2 Q87M80 Q87M80_VIBPA VP2378 2378 96-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002988201 Q87M80_nD1 Q87M80 Q87M80_VIBPA VP2378 2378 6-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001663571 e4x6gD2 002988202 Q87P00_nD1 Q87P00 Q87P00_VIBPA VP1718 1718 31-190 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000051761 e2vhdA1 002988203 Q87P00_nD2 Q87P00 Q87P00_VIBPA VP1718 1718 191-325 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000293657 e2c1vB2 002988204 Q87SI1_nD1 Q87SI1 Q87SI1_VIBPA VP0442 Cytochrome b 442 16-220,251-295 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 000333723 e2qjpJ2 002988205 Q87SI1_nD2 Q87SI1 Q87SI1_VIBPA VP0442 Cytochrome b 442 296-420 f a.7 5068 5068.1 5068.1.1 alpha bundles a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 001225065 e2qjyM3 002988206 Q87PP1_nD2 Q87PP1 Q87PP1_VIBPA VP1461 1461 166-350 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002775294 e7mi0A1 002988207 Q87PP1_nD1 Q87PP1 Q87PP1_VIBPA VP1461 1461 1-165 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002988208 Q87SY0_nD1 Q87SY0 CYSD_VIBPA VP0292 cysD Sulfate adenylyltransferase subunit 2 292 6-300 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009848 e1zunA1 002988209 Q87HT0_nD2 Q87HT0 Q87HT0_VIBPA VPA0876 AHS1 domain-containing protein 3955 86-225 f a.1 75 75.1 75.1.1 beta barrels Cyclophilin-like Cyclophilin-like Cyclophilin-like 001153571 e3va7A20 002988210 Q87HT0_nD1 Q87HT0 Q87HT0_VIBPA VPA0876 AHS1 domain-containing protein 3955 1-85 f a.11 306 306.6 306.6.1 a+b two layers Glucose permease domain IIB-like PH0987 N-terminal domain-like PH0987 N-terminal domain-like 000139061 e3mmlB2 002988211 Q87N08_nD1 Q87N08 Q87N08_VIBPA VP2068 Iron-sulfur cluster carrier protein 2068 1-80 f a.11 327 327.6 327.6.1 a+b two layers Alpha-lytic protease prodomain-like Fe-S cluster assembly (FSCA) domain-like Fe-S cluster assembly (FSCA) domain-like 001170693 e3ux3B2 002988212 Q87N08_nD2 Q87N08 Q87N08_VIBPA VP2068 Iron-sulfur cluster carrier protein 2068 81-358 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002442028 e6g2gB1 002988213 Q87RM5_nD2 Q87RM5 Q87RM5_VIBPA VP0753 TraB/GumN family protein 753 21-70,136-285 f a.17 4244 4244.1 4244.1.1 a/b three-layered sandwiches EreA/ChaN-like EreA/ChaN-like EreA/ChaN-like 000009792 e2g5gX1 002988214 Q87RM5_nD1 Q87RM5 Q87RM5_VIBPA VP0753 TraB/GumN family protein 753 91-135 f a.7 604 604.12 604.12.1 alpha bundles Spectrin repeat-like MIT domain MIT domain 001557626 e4wzxA1 002988215 Q87NZ0_nD1 Q87NZ0 Q87NZ0_VIBPA VP1728 1728 26-115,261-335 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518760 e1r9lA2 002988216 Q87NZ0_nD2 Q87NZ0 Q87NZ0_VIBPA VP1728 1728 116-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518761 e1r9lA3 002988217 Q87MY9_nD1 Q87MY9 Q87MY9_VIBPA VP2087 2087 11-335 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002988218 Q87SK3_nD3 Q87SK3 Q87SK3_VIBPA VP0420 Inorganic triphosphatase 420 381-510 f a.7 601 601.33 601.33.1 alpha bundles Four-helical up-and-down bundle CHAD domain CHAD domain 002492497 e6qv7A2 002988219 Q87SK3_nD2 Q87SK3 Q87SK3_VIBPA VP0420 Inorganic triphosphatase 420 211-380 f a.7 601 601.33 601.33.1 alpha bundles Four-helical up-and-down bundle CHAD domain CHAD domain 002492495 e6qv5A2 002988220 Q87SK3_nD1 Q87SK3 Q87SK3_VIBPA VP0420 Inorganic triphosphatase 420 1-210 f a.14 868 868.1 868.1.1 a+b complex topology mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related 001812838 e5a61A2 002988221 Q87P99_nD4 Q87P99 Q87P99_VIBPA VP1619 precorrin-2 dehydrogenase 1619 211-300 f a.17 7550 7550.1 7550.1.1 a/b three-layered sandwiches Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain 002583649 e6pr1A3 002988222 Q87P99_nD3 Q87P99 Q87P99_VIBPA VP1619 precorrin-2 dehydrogenase 1619 151-210 f a.9 4049 4049.1 4049.1.1 alpha superhelices alpha-helical domain in siroheme synthase middle domains-like alpha-helical domain in siroheme synthase middle domains-like alpha-helical domain in siroheme synthase middle domains-like 000060294 e1pjtB1 002988223 Q87P99_nD1 Q87P99 Q87P99_VIBPA VP1619 precorrin-2 dehydrogenase 1619 6-115 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000097971 e1pjtB3 002988224 Q87P99_nD2 Q87P99 Q87P99_VIBPA VP1619 precorrin-2 dehydrogenase 1619 116-150 f a.15 4029 4029.1 4029.1.1 a+b duplicates or obligate multimers SSH domain in siroheme synthase middle domains-like SSH domain in siroheme synthase middle domains-like SSH domain in siroheme synthase middle domains-like 001034811 e1pjtB5 002988225 Q87H34_nD2 Q87H34 Q87H34_VIBPA VPA1131 4210 61-145,241-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002988226 Q87H34_nD1 Q87H34 Q87H34_VIBPA VPA1131 4210 21-50 f a.7 3050 3050.1 3050.1.1 alpha bundles Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain 001697307 e3jbnAT1 002988227 Q87H34_nD3 Q87H34 Q87H34_VIBPA VPA1131 4210 146-240 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002153584 e5ub3A2 002988228 Q87TN1_nD3 Q87TN1 Q87TN1_VIBPA VP0038 38 136-180,266-325 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001312384 e4k0eA3 002988229 Q87TN1_nD4 Q87TN1 Q87TN1_VIBPA VP0038 38 1-35,326-500 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002988230 Q87TN1_nD1 Q87TN1 Q87TN1_VIBPA VP0038 38 41-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834882 e4dntA2 002988231 Q87TN1_nD7 Q87TN1 Q87TN1_VIBPA VP0038 38 651-695,786-845 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002988232 Q87TN1_nD2 Q87TN1 Q87TN1_VIBPA VP0038 38 181-265 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002988233 Q87TN1_nD8 Q87TN1 Q87TN1_VIBPA VP0038 38 501-550,846-1035 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002754742 e7m4pA8 002988234 Q87TN1_nD5 Q87TN1 Q87TN1_VIBPA VP0038 38 551-650 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816517 e7cz9B4 002988235 Q87TN1_nD6 Q87TN1 Q87TN1_VIBPA VP0038 38 696-785 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002792356 e7b8sC4 002988236 Q87KU2_nD2 Q87KU2 PRMA_VIBPA VP2883 prmA Ribosomal protein L11 methyltransferase 2882 106-290 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000134342 e3grzA1 002988237 Q87KU2_nD1 Q87KU2 PRMA_VIBPA VP2883 prmA Ribosomal protein L11 methyltransferase 2882 1-90 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000305499 e2djwF1 002988238 Q87ND3_nD1 Q87ND3 Q87ND3_VIBPA VP1935 ribonucleoside-diphosphate reductase 1935 1-350 f a.7 150 150.1 150.1.2 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Heme oxygenase/Ribonucleotide reductase 001842738 e5ci1A1 002988239 Q87JH1_nD1 Q87JH1 Q87JH1_VIBPA VPA0282 LruC domain-containing protein 3361 21-30,52-270 f a.3 10 10.6 10.6.1 beta sandwiches jelly-roll Calcium-mediated lectin Calcium-mediated lectin 000160658 e2boiA1 002988240 Q87JH1_nD2 Q87JH1 Q87JH1_VIBPA VPA0282 LruC domain-containing protein 3361 256-555 f a.3 3342 3342.1 3342.1.1 beta sandwiches C-terminal domain in a putative lipoprotein BACOVA_00967 C-terminal domain in a putative lipoprotein BACOVA_00967 C-terminal domain in a putative lipoprotein BACOVA_00967 000185449 e3oqqA2 002988241 Q87NK6_nD1 Q87NK6 Q87NK6_VIBPA VP1862 1862 6-210 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002988242 Q87LZ2_nD1 Q87LZ2 GREA_VIBPA VP2466 greA Transcription elongation factor GreA 2466 6-75 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 000004656 e1grjA1 002988243 Q87LZ2_nD2 Q87LZ2 GREA_VIBPA VP2466 greA Transcription elongation factor GreA 2466 76-155 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000006495 e1grjA2 002988244 Q87MK6_nD1 Q87MK6 Q87MK6_VIBPA VP2226 CheW-like domain-containing protein 2226 226-360 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 000164917 e2ho9A1 002988245 Q87PQ4_nD4 Q87PQ4 Q87PQ4_VIBPA VP1447 1447 676-810 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002724077 e7l5iA3 002988246 Q87PQ4_nD3 Q87PQ4 Q87PQ4_VIBPA VP1447 1447 111-195,421-675 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002776375 e7bkdD1 002988247 Q87PQ4_nD2 Q87PQ4 Q87PQ4_VIBPA VP1447 1447 196-420 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002105089 e2ivfA6 002988248 Q87PQ4_nD1 Q87PQ4 Q87PQ4_VIBPA VP1447 1447 41-110 f a.11 1001 1001.1 1001.1.1 a+b two layers Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 001878389 e5chcE4 002988249 Q87HK8_nD1 Q87HK8 Q87HK8_VIBPA VPA0955 4034 73-200 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002988250 Q87QC4_nD1 Q87QC4 Q87QC4_VIBPA VP1225 1225 1-220 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002988251 Q87GI1_nD1 Q87GI1 Q87GI1_VIBPA VPA1335 4414 1-75 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 001252018 e3udcG6 002988252 Q87HT8_nD3 Q87HT8 Q87HT8_VIBPA VPA0868 Isopentenyl-diphosphate delta-isomerase 3947 441-550 f a.6 101 101.41 101.41.1 alpha arrays HTH MRB1590 C-terminal domain MRB1590 C-terminal domain 001684036 e5d6aA3 002988253 Q87HT8_nD2 Q87HT8 Q87HT8_VIBPA VPA0868 Isopentenyl-diphosphate delta-isomerase 3947 156-440 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001684035 e5d6aA2 002988254 Q87HT8_nD1 Q87HT8 Q87HT8_VIBPA VPA0868 Isopentenyl-diphosphate delta-isomerase 3947 1-155 f a.11 241 241.18 241.18.1 a+b two layers Type III secretory system chaperone-like MRB1590 N-terminal domain MRB1590 N-terminal domain 001684034 e5d6aA1 002988255 Q87J75_nD1 Q87J75 Q87J75_VIBPA VPA0378 Lysine transporter LysE 3457 6-200 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002988256 Q87LJ2_nD1 Q87LJ2 Q87LJ2_VIBPA VP2620 DUF4426 domain-containing protein 2619 21-143 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001282336 e3uc2D1 002988257 Q87TJ9_nD1 Q87TJ9 Q87TJ9_VIBPA VP0070 oligopeptidase A 70 6-675 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001101920 e4ka7A1 002988258 Q87PM9_nD1 Q87PM9 Q87PM9_VIBPA VP1471 1471 21-45 f a.6 102 102.2 102.2.1 alpha arrays HhH/H2TH H2TH H2TH 001553110 e4v5oBM1 002988259 Q87GV8_nD1 Q87GV8 Q87GV8_VIBPA VPA1207 Phage protein 4286 16-88 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 001489105 e4odpA1 002988260 Q87GP5_nD1 Q87GP5 Q87GP5_VIBPA VPA1270 Tyr recombinase domain-containing protein 4349 1-190 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002988261 Q87GP5_nD2 Q87GP5 Q87GP5_VIBPA VPA1270 Tyr recombinase domain-containing protein 4349 191-390 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 002428100 e6gyuE2 002988262 Q87GP5_nD3 Q87GP5 Q87GP5_VIBPA VPA1270 Tyr recombinase domain-containing protein 4349 391-430 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000150341 e3vcfA1 002988263 Q87FJ4_nD1 Q87FJ4 Q87FJ4_VIBPA VPA1685 4764 1-60 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160925 e2p7pC3 002988264 Q87FJ4_nD2 Q87FJ4 Q87FJ4_VIBPA VPA1685 4764 61-139 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001214742 e4huzA6 002988265 Q87JL6_nD1 Q87JL6 PHNX_VIBPA VPA0233 phnX Phosphonoacetaldehyde hydrolase 3312 6-270 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000136265 e3iruA1 002988266 Q87SQ9_nD2 Q87SQ9 Q87SQ9_VIBPA VP0363 363 161-360 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 002035871 e4rgvB1 002988267 Q87SQ9_nD1 Q87SQ9 Q87SQ9_VIBPA VP0363 363 6-160 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 002464012 e5zxlB1 002988268 Q87IA8_nD1 Q87IA8 Q87IA8_VIBPA VPA0698 3777 6-410 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001014986 e4k38A1 002988269 Q87GK3_nD1 Q87GK3 Q87GK3_VIBPA VPA1312 PARP catalytic domain-containing protein 4391 1-155 f a.14 237 237.1 237.1.1 a+b complex topology ADP-ribosylation ADP-ribosylation ADP-ribosylation 002443903 e6edgA1 002988270 Q87S07_nD2 Q87S07 GUAA_VIBPA VP0617 guaA GMP synthase [glutamine-hydrolyzing] 617 201-400 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002832076 e7mo6B3 002988271 Q87S07_nD1 Q87S07 GUAA_VIBPA VP0617 guaA GMP synthase [glutamine-hydrolyzing] 617 6-200 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000104092 e1gpmC3 002988272 Q87S07_nD3 Q87S07 GUAA_VIBPA VP0617 guaA GMP synthase [glutamine-hydrolyzing] 617 401-515 f a.11 327 327.3 327.3.1 a+b two layers Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain 002832075 e7mo6B2 002988273 Q03478_nD1 Q03478 LAFU_VIBPA VPA1557 lafU Chemotaxis protein LafU 4636 126-285 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 000999250 e2zvyA1 002988274 Q87MH7_nD1 Q87MH7 Q87MH7_VIBPA VP2278 Putative beta-barrel assembly-enhancing protease 2278 31-265 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002431158 e6aitA1 002988275 Q87MH7_nD2 Q87MH7 Q87MH7_VIBPA VP2278 Putative beta-barrel assembly-enhancing protease 2278 266-480 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002814211 e7qe7U1 002988276 Q87P72_nD2 Q87P72 Q87P72_VIBPA VP1646 Aconitate hydratase 1646 241-360 f a.17 7542 7542.1 7542.1.2 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain II 002482579 e1c96A5 002988277 Q87P72_nD1 Q87P72 Q87P72_VIBPA VP1646 Aconitate hydratase 1646 6-240 f a.17 7542 7542.1 7542.1.1 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain 002542104 e3snpA5 002988278 Q87P72_nD3 Q87P72 Q87P72_VIBPA VP1646 Aconitate hydratase 1646 361-595 f a.17 7542 7542.1 7542.1.1 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain 002529596 e3snpA3 002988279 Q87P72_nD4 Q87P72 Q87P72_VIBPA VP1646 Aconitate hydratase 1646 611-863 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 002529594 e3snpA1 002988280 Q87MN5_nD1 Q87MN5 Q87MN5_VIBPA VP2197 FMN_red domain-containing protein 2196 1-174 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001262567 e3svlB2 002988281 Q87QY0_nD1 Q87QY0 Q87QY0_VIBPA VP1019 1019 31-60,111-159 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002543586 e6htjA1 002988282 Q87IH5_nD1 Q87IH5 CYOE2_VIBPA VPA0631 cyoE2 Protoheme IX farnesyltransferase 2 3710 6-280 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 002774821 e6m31B1 002988283 Q87JC4_nD2 Q87JC4 Q87JC4_VIBPA VPA0329 Dipeptide epimerase 3408 106-330 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008683 e1jpdX2 002988284 Q87JC4_nD1 Q87JC4 Q87JC4_VIBPA VPA0329 Dipeptide epimerase 3408 1-105 f a.11 218 218.1 218.1.1 a+b two layers Enolase-N/ribosomal protein Enolase N-terminal domain-like Enolase N-terminal domain-like 001261274 e4gfiC4 002988285 Q87LI8_nD1 Q87LI8 Q87LI8_VIBPA VP2624 UPF0020 domain-containing protein 2623 1-105 f a.11 304 304.120 304.120.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in ThiI Ferredoxin-like domain in ThiI 000005447 e1vbkA1 002988286 Q87LI8_nD2 Q87LI8 Q87LI8_VIBPA VP2624 UPF0020 domain-containing protein 2623 111-340 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002327283 e5wmmA3 002988287 Q87KJ9_nD1 Q87KJ9 Q87KJ9_VIBPA VP2978 tRNA-uridine aminocarboxypropyltransferase 2977 22-195 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 001855572 e5apgC1 002988288 Q87RB7_nD3 Q87RB7 Q87RB7_VIBPA VP0880 HNHc domain-containing protein 880 426-563 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 000008235 e1e7lA2 002988289 Q87RB7_nD2 Q87RB7 Q87RB7_VIBPA VP0880 HNHc domain-containing protein 880 216-420 f a.1 7070 7070.1 7070.1.1 beta barrels Stalk domain of SBV glycoprotein Gc Stalk domain of SBV glycoprotein Gc Stalk domain of SBV glycoprotein Gc 002629277 e7cc9B1 002988290 Q87RB7_nD1 Q87RB7 Q87RB7_VIBPA VP0880 HNHc domain-containing protein 880 6-215 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002327283 e5wmmA3 002988291 Q87P56_nD3 Q87P56 Q87P56_VIBPA VP1662 1662 371-445,496-515 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002672845 e6wa6H1 002988292 Q87P56_nD4 Q87P56 Q87P56_VIBPA VP1662 1662 446-495 f a.11 3253 3253.1 3253.1.1 a+b two layers ferredoxin-like domain in flagellar biosynthesis protein flhA ferredoxin-like domain in flagellar biosynthesis protein flhA ferredoxin-like domain in flagellar biosynthesis protein flhA 002672848 e6wa6H4 002988293 Q87P56_nD1 Q87P56 Q87P56_VIBPA VP1662 1662 21-265 f a.7 604 604.7 604.7.1 alpha bundles Spectrin repeat-like Tubulin chaperone cofactor A Tubulin chaperone cofactor A 001411967 e4cqiA1 002988294 Q87P56_nD6 Q87P56 Q87P56_VIBPA VP1662 1662 606-708 f a.17 3255 3255.1 3255.1.1 a/b three-layered sandwiches a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA 001138613 e3mixA3 002988295 Q87P56_nD2 Q87P56 Q87P56_VIBPA VP1662 1662 276-330 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002988296 Q87P56_nD5 Q87P56 Q87P56_VIBPA VP1662 1662 516-600 f a.6 3254 3254.1 3254.1.1 alpha arrays helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA 002672846 e6wa6H2 002988297 Q87PQ6_nD2 Q87PQ6 Q87PQ6_VIBPA VP1445 Integron gene cassette protein 1445 61-110 f a.7 181 181.1 181.1.1 alpha bundles Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins 001280730 e3synC4 002988298 Q87PQ6_nD1 Q87PQ6 Q87PQ6_VIBPA VP1445 Integron gene cassette protein 1445 1-45 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002063581 e5h3vB1 002988299 Q87ND4_nD3 Q87ND4 Q87ND4_VIBPA VP1934 Ribonucleoside-diphosphate reductase 1934 221-750 f a.16 2500 2500.1 2500.1.1 a/b barrels Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel 001726024 e5cnsC2 002988300 Q87ND4_nD2 Q87ND4 Q87ND4_VIBPA VP1934 Ribonucleoside-diphosphate reductase 1934 101-220 f a.6 1074 1074.1 1074.1.1 alpha arrays Alpha helical domain of ribonucleotide reductases Alpha helical domain of ribonucleotide reductases Alpha helical domain of ribonucleotide reductases 001853284 e6r1rB3 002988301 Q87ND4_nD1 Q87ND4 Q87ND4_VIBPA VP1934 Ribonucleoside-diphosphate reductase 1934 6-100 f a.6 103 103.2 103.2.1 alpha arrays RuvA-C ATP cone ATP cone 001853285 e6r1rB4 002988302 Q87NI8_nD2 Q87NI8 Q87NI8_VIBPA VP1880 L-serine dehydratase 1880 171-450 f a.6 4021 4021.1 4021.1.1 alpha arrays alpha-helical domain in 2-methylcitrate dehydratase PrpD alpha-helical domain in 2-methylcitrate dehydratase PrpD alpha-helical domain in 2-methylcitrate dehydratase PrpD 001411398 e4rqoB2 002988303 Q87NI8_nD1 Q87NI8 Q87NI8_VIBPA VP1880 L-serine dehydratase 1880 6-155 f a.11 298 298.3 298.3.1 a+b two layers FwdE/GAPDH domain-like Serine dehydratase beta chain-like Serine dehydratase beta chain-like 001411397 e4rqoB1 002988304 Q87PY2_nD1 Q87PY2 Q87PY2_VIBPA VP1368 Methyltranfer_dom domain-containing protein 1368 1-210 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001500815 e4pneB1 002988305 Q87N10_nD3 Q87N10 Q87N10_VIBPA VP2066 2066 161-370 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002156904 e5necB1 002988306 Q87N10_nD4 Q87N10 Q87N10_VIBPA VP2066 2066 371-615,636-665 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002534564 e6i96A1 002988307 Q87N10_nD1 Q87N10 Q87N10_VIBPA VP2066 2066 1-25 f a.2 7026 7026.1 7026.1.1 beta meanders N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 002485672 e6cbcB1 002988308 Q87N10_nD2 Q87N10 Q87N10_VIBPA VP2066 2066 26-115 f a.2 7026 7026.1 7026.1.1 beta meanders N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 002485672 e6cbcB1 002988309 Q87IU8_nD1 Q87IU8 Q87IU8_VIBPA VPA0508 Transcriptional regulator 3587 26-113 f a.7 622 622.1 622.1.1 alpha bundles YvfG-like HSC20 (HSCB), C-terminal oligomerisation domain HSC20 (HSCB), C-terminal oligomerisation domain 001868087 e5csdD1 002988310 Q87JG2_nD1 Q87JG2 Q87JG2_VIBPA VPA0291 Glyoxalase domain-containing protein 3370 6-120 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000005742 e1zswA4 002988311 Q87SW3_nD1 Q87SW3 Q87SW3_VIBPA VP0309 Gamma-glutamylcyclotransferase family protein 309 1-110 f a.11 810 810.1 810.1.1 a+b two layers BtrG-like (Pfam 03674) BtrG-like (Pfam 03674) BtrG-like (Pfam 03674) 000005572 e1v30A1 002988312 Q87SU7_nD1 Q87SU7 MDH_VIBPA VP0325 mdh Malate dehydrogenase 325 1-145 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000097978 e1ib6B2 002988313 Q87SU7_nD2 Q87SU7 MDH_VIBPA VP0325 mdh Malate dehydrogenase 325 146-310 f a.14 279 279.1 279.1.1 a+b complex topology LDH C-terminal domain-like LDH C-terminal domain-like LDH C-terminal domain-like 001852324 e1ib6B1 002988314 Q87NW3_nD2 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 6-45,291-340 f a.7 3615 3615.1 3615.1.1 alpha bundles Bacterial dynamin-like protein helical domain Bacterial dynamin-like protein helical domain Bacterial dynamin-like protein helical domain 002442356 e5oxfC2 002988315 Q87NW3_nD8 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 766-900 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104746 e2v0nA2 002988316 Q87NW3_nD5 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 391-460 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002988317 Q87NW3_nD6 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 461-630 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002988318 Q87NW3_nD9 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 921-1050 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104748 e2v0nA3 002988319 Q87NW3_nD7 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 631-765 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104746 e2v0nA2 002988320 Q87NW3_nD1 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 46-145 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002035448 e1dowA1 002988321 Q87NW3_nD3 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 151-290 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001406524 e4akkA2 002988322 Q87NW3_nD4 Q87NW3 Q87NW3_VIBPA VP1755 histidine kinase 1755 341-370 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002988323 Q87JY0_nD3 Q87JY0 Q87JY0_VIBPA VPA0118 3197 396-460 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002594989 e6rl5G1 002988324 Q87JY0_nD2 Q87JY0 Q87JY0_VIBPA VPA0118 3197 96-395,461-480 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001117378 e2zc0D1 002988325 Q87JY0_nD1 Q87JY0 Q87JY0_VIBPA VPA0118 3197 11-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001525305 e4mgrA2 002988326 Q87SE9_nD2 Q87SE9 Q87SE9_VIBPA VP0475 475 81-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002988327 Q87SE9_nD1 Q87SE9 Q87SE9_VIBPA VP0475 475 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002988328 Q87LU7_nD2 Q87LU7 Q87LU7_VIBPA VP2511 2511 226-305 f a.11 304 304.147 304.147.1 a+b two layers Alpha-beta plaits Tetrahydrodipicolinate acetyltransferase N-terminal domain Tetrahydrodipicolinate acetyltransferase N-terminal domain 000197838 e3bv8A1 002988329 Q87LU7_nD1 Q87LU7 Q87LU7_VIBPA VP2511 2511 1-225 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002988330 Q87J47_nD1 Q87J47 Q87J47_VIBPA VPA0406 DUF808 domain-containing protein 3485 6-300 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002604380 e6nphB1 002988331 Q87T05_nD1 Q87T05 RL29_VIBPA VP0265 rpmC 50S ribosomal protein L29 265 1-60 f a.7 192 192.4 192.4.1 alpha bundles Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) 002824027 e7mszY1 002988332 Q87QM0_nD1 Q87QM0 HFLD_VIBPA VP1129 hflD High frequency lysogenization protein HflD homolog 1129 1-205 f a.6 578 578.1 578.1.1 alpha arrays YcfC-like YcfC-like YcfC-like 000003452 e1sdiA1 002988333 Q87GT2_nD1 Q87GT2 Q87GT2_VIBPA VPA1233 4312 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002988334 Q87GT2_nD2 Q87GT2 Q87GT2_VIBPA VPA1233 4312 86-165,271-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002988335 Q87GT2_nD3 Q87GT2 Q87GT2_VIBPA VPA1233 4312 166-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002988336 Q87Q19_nD1 Q87Q19 Q87Q19_VIBPA VP1331 1331 1-418 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002988337 Q87PF8_nD1 Q87PF8 Q87PF8_VIBPA VP1544 cytochrome-c oxidase 1544 11-470 f a.9 5038 5038.1 5038.1.1 alpha superhelices Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 002717134 e6xkwn1 002988338 Q87QJ7_nD1 Q87QJ7 Q87QJ7_VIBPA VP1152 DUF218 domain-containing protein 1152 1-210 f a.17 2005 2005.2 2005.2.1 a/b three-layered sandwiches HUP domain-like YdcF YdcF 000223833 e3ca8A1 002988339 Q87I31_nD1 Q87I31 Q87I31_VIBPA VPA0775 4HBT domain-containing protein 3854 11-140 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 001116121 e2ov9C2 002988340 Q87SG1_nD1 Q87SG1 Q87SG1_VIBPA VP0463 ftsA Cell division protein FtsA 463 6-400 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000988506 e4a2aB1 002988341 Q87P90_nD3 Q87P90 Q87P90_VIBPA VP1628 1628 131-190 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 000997502 e4i44A1 002988342 Q87P90_nD4 Q87P90 Q87P90_VIBPA VP1628 1628 191-460 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002988343 Q87P90_nD1 Q87P90 Q87P90_VIBPA VP1628 1628 11-60,101-130 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002988344 Q87P90_nD2 Q87P90 Q87P90_VIBPA VP1628 1628 61-100 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001447877 e4rh7A8 002988345 Q87N76_nD2 Q87N76 Q87N76_VIBPA VP1999 HlyD_D23 domain-containing protein 1999 91-175 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002576339 e6qpqC1 002988346 Q87N76_nD5 Q87N76 Q87N76_VIBPA VP1999 HlyD_D23 domain-containing protein 1999 26-40,311-375 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145750 e3lnnA1 002988347 Q87N76_nD1 Q87N76 Q87N76_VIBPA VP1999 HlyD_D23 domain-containing protein 1999 1-25 f a.7 604 604.1 604.1.1 alpha bundles Spectrin repeat-like Spectrin repeat Spectrin repeat 002393178 e6ds9A1 002988348 Q87N76_nD3 Q87N76 Q87N76_VIBPA VP1999 HlyD_D23 domain-containing protein 1999 56-90,176-215 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002988349 Q87N76_nD4 Q87N76 Q87N76_VIBPA VP1999 HlyD_D23 domain-containing protein 1999 41-55,216-310 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002988350 Q87R65_nD2 Q87R65 Q87R65_VIBPA VP0933 933 156-375 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002988351 Q87R65_nD1 Q87R65 Q87R65_VIBPA VP0933 933 6-155 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002073989 e5u89A4 002988352 Q87R65_nD3 Q87R65 Q87R65_VIBPA VP0933 933 376-480 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 001692312 e5c5hB4 002988353 Q87QA0_nD2 Q87QA0 Q87QA0_VIBPA VP1250 1250 336-595 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000985775 e4a82C2 002988354 Q87QA0_nD1 Q87QA0 Q87QA0_VIBPA VP1250 1250 6-330 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002462955 e5mkkB3 002988355 Q87LB8_nD2 Q87LB8 Q87LB8_VIBPA VP2694 2693 86-165 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000101 e1kzlA2 002988356 Q87LB8_nD1 Q87LB8 Q87LB8_VIBPA VP2694 2693 11-85,166-235 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000145186 e3sokA1 002988357 Q87G21_nD2 Q87G21 Q87G21_VIBPA VPA1496 4575 1-65,406-675 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000422978 e3muoA2 002988358 Q87G21_nD1 Q87G21 Q87G21_VIBPA VPA1496 4575 66-405 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 000139092 e3iujA1 002988359 Q87KB5_nD1 Q87KB5 Q87KB5_VIBPA VP3062 ilvA L-threonine dehydratase 3061 6-165 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002486078 e3iauA1 002988360 Q87KB5_nD2 Q87KB5 Q87KB5_VIBPA VP3062 ilvA L-threonine dehydratase 3061 166-330 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002482201 e1tdjA5 002988361 Q87KB5_nD3 Q87KB5 Q87KB5_VIBPA VP3062 ilvA L-threonine dehydratase 3061 336-425 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005243 e1tdjA1 002988362 Q87KB5_nD4 Q87KB5 Q87KB5_VIBPA VP3062 ilvA L-threonine dehydratase 3061 426-515 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005243 e1tdjA1 002988363 Q87SJ9_nD1 Q87SJ9 HLDE_VIBPA VP0424 hldE Bifunctional protein HldE 424 6-25,46-315 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000154587 e4e84A1 002988364 Q87SJ9_nD2 Q87SJ9 HLDE_VIBPA VP0424 hldE Bifunctional protein HldE 424 326-470 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001260739 e4mvcA2 002988365 Q87RA2_nD1 Q87RA2 Q87RA2_VIBPA VP0895 895 1-85 f a.7 132 132.1 132.1.1 alpha bundles ACP-like Acyl-carrier protein (ACP) Acyl-carrier protein (ACP) 000183755 e2lkiA1 002988366 Q87S61_nD1 Q87S61 Q87S61_VIBPA VP0563 Pseudouridine synthase 563 1-110 f a.11 315 315.1 315.1.1 a+b two layers Tautomerase/MIF-like Tautomerase/MIF Tautomerase/MIF 000063028 e1u9dB1 002988367 Q87TD3_nD1 Q87TD3 Q87TD3_VIBPA VP0137 Type II secretion system protein H 137 36-110,141-190 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000868467 e4dq9B1 002988368 Q87R87_nD1 Q87R87 Q87R87_VIBPA VP0910 910 21-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001875090 e4x04B1 002988369 Q87TE4_nD1 Q87TE4 DTD_VIBPA VP0126 dtd D-aminoacyl-tRNA deacylase 126 1-144 f a.17 2494 2494.1 2494.1.1 a/b three-layered sandwiches DTD-like DTD-like (Pfam 02580) DTD-like (Pfam 02580) 000118053 e1j7gA1 002988370 Q87LC3_nD1 Q87LC3 Q87LC3_VIBPA VP2689 Rod shape-determining protein MreD 2688 1-160 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 001481950 e4rfsS1 002988371 Q87IR5_nD2 Q87IR5 Q87IR5_VIBPA VPA0540 SURF1-like protein 3620 76-235 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000024156 e1ltlE1 002988372 Q87IR5_nD1 Q87IR5 Q87IR5_VIBPA VPA0540 SURF1-like protein 3620 26-75,236-270 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 000004346 e2c2aA1 002988373 Q87N95_nD4 Q87N95 Y1980_VIBPA VP1980 UPF0313 protein VP1980 1980 641-670 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001716889 e4ztyA1 002988374 Q87N95_nD3 Q87N95 Y1980_VIBPA VP1980 UPF0313 protein VP1980 1980 336-345,366-655 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002322646 e5v1tA1 002988375 Q87N95_nD2 Q87N95 Y1980_VIBPA VP1980 UPF0313 protein VP1980 1980 116-130,346-365 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001406104 e4qp0A1 002988376 Q87N95_nD1 Q87N95 Y1980_VIBPA VP1980 UPF0313 protein VP1980 1980 6-230,277-335 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001180370 e2xiqB3 002988377 Q87I84_nD1 Q87I84 Q87I84_VIBPA VPA0722 Signal peptide protein 3801 26-110 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001824325 e4zhvA1 002988378 Q87P27_nD1 Q87P27 Q87P27_VIBPA VP1691 1691 36-114 f a.10 627 627.1 627.1.1 alpha complex topology VPS9 domain VPS9 domain VPS9 domain 001839379 e5j2lB1 002988379 Q87IV5_nD1 Q87IV5 Q87IV5_VIBPA VPA0501 protein-N(pi)-phosphohistidine--D-mannitol phosphotransferase 3580 1-355 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 000416667 e3qnqC1 002988380 Q87IV5_nD2 Q87IV5 Q87IV5_VIBPA VPA0501 protein-N(pi)-phosphohistidine--D-mannitol phosphotransferase 3580 376-465 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 000010098 e1vkrA1 002988381 Q87KR2_nD2 Q87KR2 Q87KR2_VIBPA VP2914 2913 91-275 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000200116 e3evtA1 002988382 Q87KR2_nD1 Q87KR2 Q87KR2_VIBPA VP2914 2913 6-90,276-305 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 002037732 e3hg7A2 002988383 Q87MI1_nD1 Q87MI1 Q87MI1_VIBPA VP2274 Glycine cleavage system transcriptional repressor 2274 1-80 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005249 e1u8sA1 002988384 Q87MI1_nD2 Q87MI1 Q87MI1_VIBPA VP2274 Glycine cleavage system transcriptional repressor 2274 86-180 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005250 e1u8sA2 002988385 Q87SL1_nD1 Q87SL1 Q87SL1_VIBPA VP0412 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 412 1-155 f a.11 304 304.45 304.45.1 a+b two layers Alpha-beta plaits 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 001900613 e1cbkA1 002988386 Q87GV2_nD1 Q87GV2 Q87GV2_VIBPA VPA1213 Methyltransf_25 domain-containing protein 4292 6-200 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000099517 e1n7iB1 002988387 Q87NP0_nD1 Q87NP0 Q87NP0_VIBPA VP1828 1828 46-105 f a.8 6155 6155.1 6155.1.1 alpha duplicates or obligate multimers TOG superfamily SWEET transporter SWEET transporter 002098022 e5uhqA1 002988388 Q79YX4_nD1 Q79YX4 Q79YX4_VIBPA VP2225 2225 16-160 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 000164917 e2ho9A1 002988389 Q87GM5_nD1 Q87GM5 Q87GM5_VIBPA VPA1290 Adenosine deaminase 4369 6-45 f a.7 3926 3926.1 3926.1.1 alpha bundles V-type proton ATPase subunit D V-type proton ATPase subunit D V-type proton ATPase subunit D 002537758 e6r0wG1 002988390 Q87KI0_nD4 Q87KI0 UBID_VIBPA VP2997 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2996 476-595 f a.11 327 327.12 327.12.1 a+b two layers Alpha-lytic protease prodomain-like UbiD C-terminal domain-like UbiD C-terminal domain-like 001942821 e5m1eA3 002988391 Q87KI0_nD3 Q87KI0 UBID_VIBPA VP2997 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2996 326-470 f a.11 327 327.12 327.12.1 a+b two layers Alpha-lytic protease prodomain-like UbiD C-terminal domain-like UbiD C-terminal domain-like 001942821 e5m1eA3 002988392 Q87KI0_nD1 Q87KI0 UBID_VIBPA VP2997 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2996 1-90 f a.11 3688 3688.1 3688.1.1 a+b two layers N-terminal subdomain in UbiD middle domain N-terminal subdomain in UbiD middle domain N-terminal subdomain in UbiD middle domain 002832895 e7p9qA1 002988393 Q87KI0_nD2 Q87KI0 UBID_VIBPA VP2997 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2996 91-325 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001942820 e5m1eA2 002988394 Q87KW8_nD1 Q87KW8 Q87KW8_VIBPA VP2857 2856 46-165 f a.7 3711 3711.1 3711.1.1 alpha bundles LTXXQ motif family protein LTXXQ motif family protein LTXXQ motif family protein 001032972 e3qzcB1 002988395 Q87GS5_nD3 Q87GS5 Q87GS5_VIBPA VPA1240 4319 256-445 f a.8 5079 5079.1 5079.1.1 alpha duplicates or obligate multimers Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain 002101903 e5x9hA2 002988396 Q87GS5_nD2 Q87GS5 Q87GS5_VIBPA VPA1240 4319 126-255 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 001087106 e4gqyA1 002988397 Q87GS5_nD1 Q87GS5 Q87GS5_VIBPA VPA1240 4319 6-125 f a.9 109 109.13 109.13.1 alpha superhelices Repetitive alpha hairpins MgtE N-terminal domain-like MgtE N-terminal domain-like 000004635 e2ouxA1 002988398 Q87GH8_nD2 Q87GH8 Q87GH8_VIBPA VPA1338 4417 76-340 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002591325 e6rd9X1 002988399 Q87GH8_nD1 Q87GH8 Q87GH8_VIBPA VPA1338 4417 6-75 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002657414 e6xbwD1 002988400 Q87GH8_nD3 Q87GH8 Q87GH8_VIBPA VPA1338 4417 341-420 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 002450278 e6njpD3 002988401 Q87GV1_nD1 Q87GV1 Q87GV1_VIBPA VPA1214 4293 1-55 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000377610 e2w25B1 002988402 Q87GV1_nD2 Q87GV1 Q87GV1_VIBPA VPA1214 4293 56-145 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000315937 e2gqqC2 002988403 Q87GJ6_nD2 Q87GJ6 Q87GJ6_VIBPA VPA1319 4399 66-115 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000131793 e1mdmA2 002988404 Q87GJ6_nD1 Q87GJ6 Q87GJ6_VIBPA VPA1319 4399 1-60 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001094838 e3vwbA1 002988405 Q87GJ6_nD3 Q87GJ6 Q87GJ6_VIBPA VPA1319 4399 116-310 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000405821 e3oymA3 002988406 Q87NC2_nD4 Q87NC2 Q87NC2_VIBPA VP1946 DNA polymerase 1946 641-780 f a.7 4969 4969.1 4969.1.1 alpha bundles "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I 001710851 e3k59A1 002988407 Q87NC2_nD3 Q87NC2 Q87NC2_VIBPA VP1946 DNA polymerase 1946 371-640 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710853 e3k59A3 002988408 Q87NC2_nD2 Q87NC2 Q87NC2_VIBPA VP1946 DNA polymerase 1946 151-370 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002801086 e7om3A2 002988409 Q87NC2_nD1 Q87NC2 Q87NC2_VIBPA VP1946 DNA polymerase 1946 1-150 f a.11 304 304.114 304.114.1 a+b two layers Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain 001710852 e3k59A2 002988410 Q87NU5_nD1 Q87NU5 AGUA_VIBPA VP1773 aguA Putative agmatine deiminase 1773 6-360 f a.15 232 232.1 232.1.1 a+b duplicates or obligate multimers Pentein Pentein Pentein 002462464 e6nicD1 002988411 Q87M87_nD2 Q87M87 ARGA_VIBPA VP2371 argA Amino-acid acetyltransferase 2371 301-445 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001190242 e2r98A6 002988412 Q87M87_nD1 Q87M87 ARGA_VIBPA VP2371 argA Amino-acid acetyltransferase 2371 6-295 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 001190241 e2r98A5 002988413 Q87G28_nD1 Q87G28 Q87G28_VIBPA VPA1490 N-acetyltransferase domain-containing protein 4568 6-90 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011068 e1xmtA1 002988414 Q79YW5_nD1 Q79YW5 Q79YW5_VIBPA VP2242 Flagellar motor switch protein FliM 2242 46-235 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 002117601 e5x0zE1 002988415 Q79YW5_nD2 Q79YW5 Q79YW5_VIBPA VP2242 Flagellar motor switch protein FliM 2242 246-265,286-320 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 001558568 e4yxcB2 002988416 Q87HD6_nD2 Q87HD6 Q87HD6_VIBPA VPA1029 Type VI secretion system baseplate subunit TssG 4108 141-200,231-285 f a.11 327 327.11 327.11.1 a+b two layers Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II) 000136123 e3ievA1 002988417 Q87HD6_nD1 Q87HD6 Q87HD6_VIBPA VPA1029 Type VI secretion system baseplate subunit TssG 4108 11-135 f a.11 294 294.2 294.2.1 a+b two layers CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C 002136476 e5nodA1 002988418 Q87IN1_nD3 Q87IN1 Q87IN1_VIBPA VPA0575 3654 531-655 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002148237 e5u29C2 002988419 Q87IN1_nD2 Q87IN1 Q87IN1_VIBPA VPA0575 3654 1-10,271-530 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002988420 Q87IN1_nD1 Q87IN1 Q87IN1_VIBPA VPA0575 3654 11-270 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002148238 e5u29C3 002988421 Q87NG1_nD1 Q87NG1 Q87NG1_VIBPA VP1907 1907 1-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001015137 e4if4A2 002988422 Q87NG1_nD2 Q87NG1 Q87NG1_VIBPA VP1907 1907 141-210 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 002552682 e6kjuB2 002988423 Q87N81_nD1 Q87N81 Q87N81_VIBPA VP1994 1994 1-174 f a.17 7561 7561.1 7561.1.1 a/b three-layered sandwiches Isochorismatase-like hydrolases Isochorismatase-like hydrolases Isochorismatase-like hydrolases 002716990 e6xjmD1 002988424 Q87QW3_nD2 Q87QW3 MUKE_VIBPA VP1036 mukE Chromosome partition protein MukE 1036 76-200 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002808221 e7v8pA1 002988425 Q87QW3_nD1 Q87QW3 MUKE_VIBPA VP1036 mukE Chromosome partition protein MukE 1036 6-75 f a.11 3492 3492.1 3492.1.1 a+b two layers Chromosome partition protein mukE N-terminal domain Chromosome partition protein mukE N-terminal domain Chromosome partition protein mukE N-terminal domain 002074402 e3eukM1 002988426 Q87QR4_nD1 Q87QR4 Q87QR4_VIBPA VP1085 ThiF domain-containing protein 1085 6-140 f a.11 216 216.1 216.1.1 a+b two layers UBC-like UBC-like UBC-like 001283728 e4nfaA2 002988427 Q87QR4_nD2 Q87QR4 Q87QR4_VIBPA VP1085 ThiF domain-containing protein 1085 156-385 f a.17 2003 2003.1 2003.1.9 a/b three-layered sandwiches Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins 002398294 e6dc6C1 002988428 Q87J29_nD1 Q87J29 Q87J29_VIBPA VPA0424 3503 41-135 f a.18 2484 2484.6 2484.6.1 mixed a+b and a/b Ribonuclease H-like Periplasmic domain of ExbD/TolR Periplasmic domain of ExbD/TolR 001685126 e5by4A1 002988429 Q87LX4_nD1 Q87LX4 Q87LX4_VIBPA VP2484 2484 1-90 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000134788 e3h7lA2 002988430 Q87LX4_nD2 Q87LX4 Q87LX4_VIBPA VP2484 2484 91-570 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 001165135 e3h7lA3 002988431 Q87RD8_nD1 Q87RD8 Q87RD8_VIBPA VP0859 FeoC domain-containing protein 859 1-65 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001175691 e4awxB2 002988432 Q87R60_nD2 Q87R60 Q87R60_VIBPA VP0938 TetR_C_33 domain-containing protein 938 61-195 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 001688908 e5d1rA2 002988433 Q87R60_nD1 Q87R60 Q87R60_VIBPA VP0938 TetR_C_33 domain-containing protein 938 6-60 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000137965 e3lhqA1 002988434 Q87JD2_nD1 Q87JD2 Q87JD2_VIBPA VPA0322 Ovule protein 3400 26-90 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001219773 e3d2uA4 002988435 Q87G24_nD4 Q87G24 Q87G24_VIBPA VPA1493 endopeptidase La 4572 541-670 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002794666 e7ev6A1 002988436 Q87G24_nD3 Q87G24 Q87G24_VIBPA VPA1493 endopeptidase La 4572 446-540 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001572549 e3k1jA1 002988437 Q87G24_nD5 Q87G24 Q87G24_VIBPA VPA1493 endopeptidase La 4572 671-785 f a.17 3010 3010.1 3010.1.1 a/b three-layered sandwiches C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains 001117764 e4fw9A5 002988438 Q87G24_nD2 Q87G24 Q87G24_VIBPA VPA1493 endopeptidase La 4572 6-15,36-85,311-445 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001828414 e4zpxA1 002988439 Q87G24_nD1 Q87G24 Q87G24_VIBPA VPA1493 endopeptidase La 4572 86-310 f a.11 3714 3714.1 3714.1.1 a+b two layers Lon-like protease MtaLonC helical domain Lon-like protease MtaLonC helical domain Lon-like protease MtaLonC helical domain 001068675 e4fwvA2 002988440 Q87M60_nD1 Q87M60 GAL1_VIBPA VP2398 galK Galactokinase 2398 6-200 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002443622 e6q90A1 002988441 Q87M60_nD2 Q87M60 GAL1_VIBPA VP2398 galK Galactokinase 2398 201-380 f a.11 304 304.1 304.1.1 a+b two layers Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain 001155605 e3v5rA3 002988442 Q87RF3_nD1 Q87RF3 Q87RF3_VIBPA VP0844 Succinate dehydrogenase hydrophobic membrane anchor subunit 844 1-114 f a.7 5069 5069.1 5069.1.3 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits 002704890 e7jz2H1 002988443 Q87KS6_nD1 Q87KS6 Q87KS6_VIBPA VP2900 KAP NTPase domain-containing protein 2899 11-290 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002128573 e5uj7E1 002988444 Q87KS6_nD2 Q87KS6 Q87KS6_VIBPA VP2900 KAP NTPase domain-containing protein 2899 291-490 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001756668 e3vkgA10 002988445 Q87T96_nD1 Q87T96 Q87T96_VIBPA VP0174 174 1-220 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002988446 Q87IP2_nD1 Q87IP2 Q87IP2_VIBPA VPA0564 HAD family hydrolase 3643 1-200 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000103523 e1swwA1 002988447 Q87LK0_nD1 Q87LK0 Y2612_VIBPA VP2612 UPF0301 protein VP2612 2611 1-185 f a.1 4113 4113.1 4113.1.1 beta barrels VC0467-like VC0467-like VC0467-like 000000678 e2hafA1 002988448 Q87N71_nD1 Q87N71 Q87N71_VIBPA VP2004 Signal peptide protein 2004 26-175 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 001018784 e4g6tA1 002988449 Q87GY8_nD2 Q87GY8 Q87GY8_VIBPA VPA1177 4256 316-385 f a.11 284 284.2 284.2.1 a+b two layers FKBP-like Chitinase insertion domain Chitinase insertion domain 002455590 e6bt9B2 002988450 Q87GY8_nD1 Q87GY8 Q87GY8_VIBPA VPA1177 4256 21-315,386-430 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001098086 e3b9eA3 002988451 Q87L64_nD1 Q87L64 Q87L64_VIBPA VP2748 2747 6-40 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 002131732 e3jc9Oa2 002988452 Q87L64_nD2 Q87L64 Q87L64_VIBPA VP2748 2747 96-190 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002988453 Q87PW7_nD1 Q87PW7 Q87PW7_VIBPA VP1383 1383 1-240 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160546 e2gfpA1 002988454 Q87N75_nD1 Q87N75 Q87N75_VIBPA VP2000 2000 1-185 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000427328 e3tcvB1 002988455 Q87SK2_nD1 Q87SK2 Q87SK2_VIBPA VP0422 422 1-270 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002770733 e7eebC1 002988456 Q87GS7_nD1 Q87GS7 Q87GS7_VIBPA VPA1238 Pyridoxamine 5'-phosphate oxidase family protein 4317 21-230 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 002485465 e6rk0A1 002988457 Q87MZ3_nD4 Q87MZ3 Q87MZ3_VIBPA VP2083 Phosphate acetyltransferase 2083 536-680 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002812869 e7t88A1 002988458 Q87MZ3_nD3 Q87MZ3 Q87MZ3_VIBPA VP2083 Phosphate acetyltransferase 2083 391-535,681-714 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002812870 e7t88A2 002988459 Q87MZ3_nD2 Q87MZ3 Q87MZ3_VIBPA VP2083 Phosphate acetyltransferase 2083 226-355 f a.17 2493 2493.1 2493.1.1 a/b three-layered sandwiches MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like 000011453 e2iojA1 002988460 Q87MZ3_nD1 Q87MZ3 Q87MZ3_VIBPA VP2083 Phosphate acetyltransferase 2083 1-225,356-390 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002442028 e6g2gB1 002988461 Q87RY0_nD1 Q87RY0 Y646_VIBPA VP0646 UPF0125 protein VP0646 646 6-95 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000142852 e3po0A1 002988462 Q87QI8_nD3 Q87QI8 Q87QI8_VIBPA VP1161 Cytochrome c-type protein 1161 326-390 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001290132 e3u99A2 002988463 Q87QI8_nD1 Q87QI8 Q87QI8_VIBPA VP1161 Cytochrome c-type protein 1161 41-185 f a.19 139 139.1 139.1.1 few secondary structure elements Multiheme cytochromes Cytochrome c3-like Cytochrome c3-like 001644188 e2vr0F1 002988464 Q87QI8_nD2 Q87QI8 Q87QI8_VIBPA VP1161 Cytochrome c-type protein 1161 206-325 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001737448 e5ftbA3 002988465 Q87NQ2_nD1 Q87NQ2 Q87NQ2_VIBPA VP1816 1816 6-138 f a.12 312 312.1 312.1.1 a+b three layers HIT-like HIT-related HIT-related 000141636 e3l7xA1 002988466 Q87HG0_nD3 Q87HG0 Q87HG0_VIBPA VPA1005 dld Quinone-dependent D-lactate dehydrogenase 4084 271-325,356-560 f a.11 304 304.6 304.6.1 a+b two layers Alpha-beta plaits FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 002774829 e6v42A2 002988467 Q87HG0_nD2 Q87HG0 Q87HG0_VIBPA VPA1005 dld Quinone-dependent D-lactate dehydrogenase 4084 331-355 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 000078135 e1kdhA3 002988468 Q87HG0_nD1 Q87HG0 Q87HG0_VIBPA VPA1005 dld Quinone-dependent D-lactate dehydrogenase 4084 6-270 f a.14 217 217.1 217.1.1 a+b complex topology FAD-binding domain-like FAD-binding domain FAD-binding domain 000080853 e1f0xB2 002988469 Q87LM1_nD1 Q87LM1 Q87LM1_VIBPA VP2590 Cell division protein ZapA 2589 6-95 f a.15 857 857.1 857.1.1 a+b duplicates or obligate multimers Cell division protein ZapA-like Cell division protein ZapA-like Cell division protein ZapA-like 000367580 e3hnwB1 002988470 Q87PD9_nD2 Q87PD9 Q87PD9_VIBPA VP1575 1575 146-275 f a.3 10 10.2 10.2.1 beta sandwiches jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins) 000184943 e2vvfA2 002988471 Q87PD9_nD1 Q87PD9 Q87PD9_VIBPA VP1575 1575 1-145 f a.3 10 10.2 10.2.1 beta sandwiches jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins) 001014044 e3j31D1 002988472 Q87JN9_nD1 Q87JN9 Q87JN9_VIBPA VPA0209 3288 1-180 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 001934017 e5u2kA1 002988473 Q87KK3_nD1 Q87KK3 Q87KK3_VIBPA VP2974 2973 6-335 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002642520 e6khmK1 002988474 Q87FH6_nD1 Q87FH6 Q87FH6_VIBPA VPA1703 TRAP transporter small permease protein 4782 6-35 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002988475 Q87FH6_nD2 Q87FH6 Q87FH6_VIBPA VPA1703 TRAP transporter small permease protein 4782 46-160 f a.8 6155 6155.1 6155.1.1 alpha duplicates or obligate multimers TOG superfamily SWEET transporter SWEET transporter 001388514 e4qndA1 002988476 Q87GU5_nD7 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 721-855 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010042 e2ayxA1 002988477 Q87GU5_nD3 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 301-355 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002988478 Q87GU5_nD4 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 356-470 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002141257 e5xgbA3 002988479 Q87GU5_nD6 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 546-720 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002568309 e6qrjA2 002988480 Q87GU5_nD1 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 16-50,271-300 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002512583 e6nb0A2 002988481 Q87GU5_nD2 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 51-270 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000006843 e2hjeA1 002988482 Q87GU5_nD5 Q87GU5 LUXQ_VIBPA VPA1220 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ 4299 471-545 f a.7 622 622.4 622.4.1 alpha bundles YvfG-like Mite allergen Der p 5-related Mite allergen Der p 5-related 000392517 e3mq1B1 002988483 Q87PF2_nD1 Q87PF2 Q87PF2_VIBPA VP1550 AsnC_trans_reg domain-containing protein 1550 1-65 f a.15 4100 4100.1 4100.1.1 a+b duplicates or obligate multimers TTHA1013/TTHA0281-like TTHA1013/TTHA0281-like TTHA1013/TTHA0281-like 000007730 e1wv8A1 002988484 Q87JX7_nD1 Q87JX7 Q87JX7_VIBPA VPA0121 Type II secretion system protein 3200 81-234 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000868467 e4dq9B1 002988485 Q87MW0_nD1 Q87MW0 Q87MW0_VIBPA VP2121 Aldehyde-alcohol dehydrogenase 2121 1-210 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001905928 e5j7iB2 002988486 Q87MW0_nD2 Q87MW0 Q87MW0_VIBPA VP2121 Aldehyde-alcohol dehydrogenase 2121 211-445 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001905920 e5j78A2 002988487 Q87MW0_nD4 Q87MW0 Q87MW0_VIBPA VP2121 Aldehyde-alcohol dehydrogenase 2121 641-865 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 001106650 e3zdrA1 002988488 Q87MW0_nD3 Q87MW0 Q87MW0_VIBPA VP2121 Aldehyde-alcohol dehydrogenase 2121 456-640 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 002525254 e6ahcE4 002988489 Q87I81_nD2 Q87I81 Q87I81_VIBPA VPA0725 3804 111-225 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001035504 e2vmaA1 002988490 Q87I81_nD1 Q87I81 Q87I81_VIBPA VPA0725 3804 56-110 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002588605 e6p6jA1 002988491 Q87I81_nD3 Q87I81 Q87I81_VIBPA VPA0725 3804 226-285 f a.21 5042 5042.1 5042.1.1 extended segments Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region 001738407 e3jcfC2 002988492 Q87T02_nD1 Q87T02 RL24_VIBPA VP0268 rplX 50S ribosomal protein L24 268 1-105 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002774420 e6z1pAy1 002988493 Q87PE2_nD1 Q87PE2 Q87PE2_VIBPA VP1571 DNAase 1571 1-120 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001288872 e4ollA1 002988494 Q87RR6_nD1 Q87RR6 Q87RR6_VIBPA VP0711 711 1-480 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001780066 e5brpD1 002988495 Q87RR6_nD2 Q87RR6 Q87RR6_VIBPA VP0711 711 481-560 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 000001981 e1uokA1 002988496 Q87MR7_nD1 Q87MR7 Q87MR7_VIBPA VP2163 2164 21-525 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 001268779 e3wbhA2 002988497 Q87QM1_nD2 Q87QM1 Q87QM1_VIBPA VP1128 Adenylosuccinate lyase 1128 126-370 f a.6 602 602.1 602.1.1 alpha arrays L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like 000133602 e1yfmA1 002988498 Q87QM1_nD1 Q87QM1 Q87QM1_VIBPA VP1128 Adenylosuccinate lyase 1128 21-120 f a.6 4952 4952.1 4952.1.1 alpha arrays L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like 002807653 e7t29A2 002988499 Q87QM1_nD3 Q87QM1 Q87QM1_VIBPA VP1128 Adenylosuccinate lyase 1128 371-455 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 001194698 e2ptrB6 002988500 Q87FL4_nD2 Q87FL4 Q87FL4_VIBPA VPA1665 4744 131-230 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001148332 e4knyB4 002988501 Q87FL4_nD1 Q87FL4 Q87FL4_VIBPA VPA1665 4744 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002988502 Q87G54_nD1 Q87G54 Q87G54_VIBPA VPA1463 HutR like protein 4542 31-188 f a.14 209 209.1 209.1.1 a+b complex topology C-type lectin-like C-type lectin-like C-type lectin-like 000185718 e4epsA3 002988503 Q87KM3_nD1 Q87KM3 Q87KM3_VIBPA VP2954 Cell division protein FtsX 2953 81-180 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 002697243 e6tpiB1 002988504 Q87KM3_nD2 Q87KM3 Q87KM3_VIBPA VP2954 Cell division protein FtsX 2953 26-75,186-320 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002589205 e5nikK1 002988505 Q87SF2_nD1 Q87SF2 Q87SF2_VIBPA VP0472 ABC transporter permease 472 11-115 f a.10 3843 3843.1 3843.1.1 alpha complex topology NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K 002675993 e6zkbK1 002988506 Q87KD0_nD1 Q87KD0 Q87KD0_VIBPA VP3047 Ribonuclease 3046 101-210 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000033711 e2g30A1 002988507 Q87J33_nD1 Q87J33 Q87J33_VIBPA VPA0420 3499 6-65 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000176312 e3mvpA1 002988508 Q87J33_nD2 Q87J33 Q87J33_VIBPA VPA0420 3499 66-150 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 002098379 e5xazB1 002988509 Q87K86_nD1 Q87K86 Q87K86_VIBPA VPA0012 mrdB Peptidoglycan glycosyltransferase MrdB 3091 6-355 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002988510 Q87R62_nD1 Q87R62 Y936_VIBPA VP0936 UPF0324 membrane protein VP0936 936 1-305 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 000147023 e3zuxA1 002988511 Q87FK1_nD2 Q87FK1 Q87FK1_VIBPA VPA1678 4757 176-220 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002988512 Q87FK1_nD1 Q87FK1 Q87FK1_VIBPA VPA1678 4757 6-175 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001294 e2arcA1 002988513 Q87FK1_nD3 Q87FK1 Q87FK1_VIBPA VPA1678 4757 221-275 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002988514 Q87LM3_nD1 Q87LM3 Y2588_VIBPA VP2588 UPF0149 protein VP2588 2587 6-180 f a.6 635 635.1 635.1.1 alpha arrays YgfB-like YgfB-like YgfB-like 000003454 e1izmA1 002988515 Q87RD6_nD1 Q87RD6 SYR_VIBPA VP0861 argS Arginine--tRNA ligase 861 1-105 f a.11 310 310.1 310.1.1 a+b two layers RRF/tRNA synthetase additional domain-like Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 002430985 e5yymA2 002988516 Q87RD6_nD2 Q87RD6 SYR_VIBPA VP0861 argS Arginine--tRNA ligase 861 111-370 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002488233 e4r3zB2 002988517 Q87RD6_nD3 Q87RD6 SYR_VIBPA VP0861 argS Arginine--tRNA ligase 861 371-575 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002490059 e5yymA4 002988518 Q87LX2_nD1 Q87LX2 Q87LX2_VIBPA VP2486 beta-N-acetylhexosaminidase 2486 1-125 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 002430483 e6eztB3 002988519 Q87LX2_nD2 Q87LX2 Q87LX2_VIBPA VP2486 beta-N-acetylhexosaminidase 2486 126-260 f a.18 2498 2498.2 2498.2.1 mixed a+b and a/b Zincin-like beta-N-acetylhexosaminidase-like domain beta-N-acetylhexosaminidase-like domain 002628357 e6k35B1 002988520 Q87LX2_nD3 Q87LX2 Q87LX2_VIBPA VP2486 beta-N-acetylhexosaminidase 2486 261-635 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002430481 e6eztB1 002988521 Q87N12_nD1 Q87N12 Q87N12_VIBPA VP2064 protein-tyrosine-phosphatase 2064 1-149 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001299635 e4lrqB1 002988522 Q87RP2_nD1 Q87RP2 Q87RP2_VIBPA VP0735 735 1-390 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002773986 e6pvgA1 002988523 Q87JD0_nD1 Q87JD0 Q87JD0_VIBPA VPA0323 Nitro_FeMo-Co domain-containing protein 3402 1-110 f a.18 2484 2484.4 2484.4.1 mixed a+b and a/b Ribonuclease H-like Nitrogenase accessory factor-like Nitrogenase accessory factor-like 000165924 e2re2A1 002988524 Q87M31_nD2 Q87M31 Q87M31_VIBPA VP2427 2427 91-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002988525 Q87M31_nD1 Q87M31 Q87M31_VIBPA VP2427 2427 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002988526 Q87G69_nD1 Q87G69 Q87G69_VIBPA VPA1448 Restriction endonuclease subunit S 4527 27-55 f a.14 4333 4333.1 4333.1.1 a+b complex topology DNA methylase specificity domain DNA methylase specificity domain DNA methylase specificity domain 000007667 e1ydxA2 002988527 Q87SD5_nD2 Q87SD5 Q87SD5_VIBPA VP0489 489 126-235 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002749 e1ys7A1 002988528 Q87SD5_nD1 Q87SD5 Q87SD5_VIBPA VP0489 489 1-120 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002988529 Q87G18_nD1 Q87G18 LLDD_VIBPA VPA1499 lldD L-lactate dehydrogenase 4578 1-379 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002396192 e6bfgB1 002988530 Q87FV8_nD1 Q87FV8 Q87FV8_VIBPA VPA1570 DUF2799 domain-containing protein 4649 21-80 f a.7 6028 6028.1 6028.1.1 alpha bundles Ribosome modulation factor Ribosome modulation factor Ribosome modulation factor 002403868 e6h58vv1 002988531 Q87FV8_nD2 Q87FV8 Q87FV8_VIBPA VPA1570 DUF2799 domain-containing protein 4649 86-160 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 001276367 e2zr3A3 002988532 Q87QN6_nD1 Q87QN6 BIOB_VIBPA VP1113 bioB Biotin synthase 1113 6-345 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008659 e1r30A1 002988533 Q79YX1_nD1 Q79YX1 Q79YX1_VIBPA VP2231 2231 1-125 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000152472 e3to5A1 002988534 Q87ST6_nD2 Q87ST6 RSMA_VIBPA VP0336 rsmA Ribosomal RNA small subunit methyltransferase A 336 201-265 f a.6 102 102.2 102.2.1 alpha arrays HhH/H2TH H2TH H2TH 000048518 e1qyrB1 002988535 Q87ST6_nD1 Q87ST6 RSMA_VIBPA VP0336 rsmA Ribosomal RNA small subunit methyltransferase A 336 6-200 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001515146 e1qyrB2 002988536 Q87IQ8_nD1 Q87IQ8 Q87IQ8_VIBPA VPA0548 OmpA-like domain-containing protein 3627 61-208 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 000999250 e2zvyA1 002988537 Q87JZ8_nD1 Q87JZ8 Q87JZ8_VIBPA VPA0100 Lactamase_B domain-containing protein 3179 26-370 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 001560838 e4qn9B1 002988538 Q87G50_nD1 Q87G50 Q87G50_VIBPA VPA1467 4546 16-660 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 000140909 e2xe4A2 002988539 Q87KZ3_nD1 Q87KZ3 SECB_VIBPA VP2831 secB Protein-export protein SecB 2830 11-150 f a.11 504 504.1 504.1.1 a+b two layers Bacterial protein-export protein SecB Bacterial protein-export protein SecB Bacterial protein-export protein SecB 000069940 e1fx3A1 002988540 Q87J86_nD2 Q87J86 Q87J86_VIBPA VPA0367 Putrescine-binding periplasmic protein 3446 131-250,321-344 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002801655 e7oywA1 002988541 Q87J86_nD1 Q87J86 Q87J86_VIBPA VPA0367 Putrescine-binding periplasmic protein 3446 16-130,251-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002801655 e7oywA1 002988542 Q87S73_nD2 Q87S73 Q87S73_VIBPA VP0551 ettA Energy-dependent translational throttle protein EttA 551 251-555 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002814626 e7msmx2 002988543 Q87S73_nD1 Q87S73 Q87S73_VIBPA VP0551 ettA Energy-dependent translational throttle protein EttA 551 1-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001142663 e3j5sD2 002988544 Q87HQ5_nD1 Q87HQ5 Q87HQ5_VIBPA VPA0905 KxDL domain-containing protein 3984 6-100 f a.19 4120 4120.1 4120.1.1 few secondary structure elements Tim10/DDP Tim10/DDP Tim10/DDP 000007962 e2bskA1 002988545 Q87P89_nD1 Q87P89 RLMI_VIBPA VP1629 rlmI Ribosomal RNA large subunit methyltransferase I 1629 1-70 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 000351326 e3c0kB1 002988546 Q87P89_nD2 Q87P89 RLMI_VIBPA VP1629 rlmI Ribosomal RNA large subunit methyltransferase I 1629 71-395 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000351327 e3c0kB2 002988547 Q87NF0_nD1 Q87NF0 Q87NF0_VIBPA VP1918 Peptidase_M75 domain-containing protein 1918 31-335 f a.7 3719 3719.1 3719.1.1 alpha bundles Imelysin peptidase-like Imelysin peptidase-like Imelysin peptidase-like 001068652 e3pf0A1 002988548 Q87KH1_nD1 Q87KH1 Q87KH1_VIBPA VP3006 3005 6-100 f a.11 331 331.4 331.4.1 a+b two layers TBP-like Kinase associated domain 1, KA1 Kinase associated domain 1, KA1 001842130 e5iriB1 002988549 Q87KL7_nD1 Q87KL7 Q87KL7_VIBPA VP2960 DUF2492 family protein 2959 6-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000147301 e2lnbA1 002988550 Q87SQ5_nD5 Q87SQ5 Q87SQ5_VIBPA VP0367 367 591-635 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002988551 Q87SQ5_nD2 Q87SQ5 Q87SQ5_VIBPA VP0367 367 226-325 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001140903 e4lrxC2 002988552 Q87SQ5_nD1 Q87SQ5 Q87SQ5_VIBPA VP0367 367 6-205 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001140904 e4lrxC1 002988553 Q87SQ5_nD4 Q87SQ5 Q87SQ5_VIBPA VP0367 367 511-590 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001160041 e1ojlD5 002988554 Q87SQ5_nD3 Q87SQ5 Q87SQ5_VIBPA VP0367 367 326-510 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002629367 e6iy8A2 002988555 Q87MY1_nD1 Q87MY1 Q87MY1_VIBPA VP2095 Molybdenum cofactor biosynthesis protein B 2095 6-165 f a.17 7541 7541.1 7541.1.1 a/b three-layered sandwiches Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins 000109386 e1mkzB1 002988556 Q87I06_nD1 Q87I06 Q87I06_VIBPA VPA0800 AAA domain-containing protein 3879 61-105 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000059858 e2grmB2 002988557 Q87I06_nD2 Q87I06 Q87I06_VIBPA VPA0800 AAA domain-containing protein 3879 1-60,106-413 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002644548 e6yufC1 002988558 Q87FZ1_nD1 Q87FZ1 Q87FZ1_VIBPA VPA1529 EamA family transporter 4608 6-300 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002988559 Q87S44_nD1 Q87S44 Q87S44_VIBPA VP0580 Alkyl hydroperoxide reductase C 580 1-195 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002730755 e7kizH1 002988560 Q87SA1_nD1 Q87SA1 LGT_VIBPA VP0523 lgt Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase 523 6-265 f a.7 1037 1037.1 1037.1.1 alpha bundles Prolipoprotein diacylglyceryl transferase Prolipoprotein diacylglyceryl transferase Prolipoprotein diacylglyceryl transferase 001734349 e5azbA1 002988561 Q87P23_nD3 Q87P23 Q87P23_VIBPA VP1695 1695 226-290 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 001851172 e4alzA2 002988562 Q87P23_nD4 Q87P23 Q87P23_VIBPA VP1695 1695 296-365 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 001851173 e4alzA3 002988563 Q87P23_nD2 Q87P23 Q87P23_VIBPA VP1695 1695 166-225 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 001851171 e4alzA1 002988564 Q87P23_nD5 Q87P23 Q87P23_VIBPA VP1695 1695 366-420 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 000185450 e3ossC1 002988565 Q87P23_nD1 Q87P23 Q87P23_VIBPA VP1695 1695 1-100 f a.3 73 73.1 73.1.1 beta sandwiches SMAD/FHA domain SMAD/FHA domain SMAD/FHA domain 001238943 e4a0eA2 002988566 Q87QZ0_nD1 Q87QZ0 Q87QZ0_VIBPA VP1008 1008 46-359 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002327394 e6ehbC1 002988567 Q87R51_nD1 Q87R51 Q87R51_VIBPA VP0947 947 1-55 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045586 e2cfxD1 002988568 Q87R51_nD2 Q87R51 Q87R51_VIBPA VP0947 947 61-150 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000135839 e3i4pA2 002988569 Q87KT2_nD1 Q87KT2 Q87KT2_VIBPA VP2894 2893 1-110 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 002540059 e6jniD1 002988570 Q87RN2_nD1 Q87RN2 Q87RN2_VIBPA VP0745 Invasion protein 745 1-120 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001344566 e3o1jB3 002988571 Q87P74_nD4 Q87P74 Q87P74_VIBPA VP1644 1644 506-634 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002121238 e5gxdA4 002988572 Q87P74_nD3 Q87P74 Q87P74_VIBPA VP1644 1644 416-505 f a.1 4011 4011.1 4011.1.1 beta barrels beta-barrel domain in acetyl-CoA synthetase-like proteins beta-barrel domain in acetyl-CoA synthetase-like proteins beta-barrel domain in acetyl-CoA synthetase-like proteins 002121235 e5gxdA1 002988573 Q87P74_nD1 Q87P74 Q87P74_VIBPA VP1644 1644 11-240 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002121237 e5gxdA3 002988574 Q87P74_nD2 Q87P74 Q87P74_VIBPA VP1644 1644 241-430 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002121236 e5gxdA2 002988575 Q87RX0_nD1 Q87RX0 Q87RX0_VIBPA VP0656 656 41-143 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001411537 e4noaA1 002988576 Q87FZ0_nD1 Q87FZ0 Q87FZ0_VIBPA VPA1530 4609 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002988577 Q87FZ0_nD2 Q87FZ0 Q87FZ0_VIBPA VPA1530 4609 86-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002988578 Q87SD0_nD1 Q87SD0 Q87SD0_VIBPA VP0494 Bifunctional aspartokinase/homoserine dehydrogenase 494 1-295 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 000338337 e3c1mC3 002988579 Q87SD0_nD2 Q87SD0 Q87SD0_VIBPA VP0494 Bifunctional aspartokinase/homoserine dehydrogenase 494 311-395 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 002410348 e6mx1A2 002988580 Q87SD0_nD5 Q87SD0 Q87SD0_VIBPA VP0494 Bifunctional aspartokinase/homoserine dehydrogenase 494 616-795 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000006757 e1ebfA1 002988581 Q87SD0_nD3 Q87SD0 Q87SD0_VIBPA VP0494 Bifunctional aspartokinase/homoserine dehydrogenase 494 396-460 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001190370 e3c1mC6 002988582 Q87SD0_nD4 Q87SD0 Q87SD0_VIBPA VP0494 Bifunctional aspartokinase/homoserine dehydrogenase 494 461-615,796-815 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009115 e1ebfA2 002988583 Q87ML8_nD1 Q87ML8 Q87ML8_VIBPA VP2213 2213 31-439 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 000420253 e3pgsA1 002988584 Q87QF3_nD1 Q87QF3 Q87QF3_VIBPA VP1196 1196 26-155,306-355 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002988585 Q87QF3_nD2 Q87QF3 Q87QF3_VIBPA VP1196 1196 156-305,361-385 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002988586 Q87KY3_nD1 Q87KY3 Q87KY3_VIBPA VP2841 Fumarate reductase iron-sulfur subunit 2840 6-105 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006118 e1kf6B2 002988587 Q87KY3_nD2 Q87KY3 Q87KY3_VIBPA VP2841 Fumarate reductase iron-sulfur subunit 2840 106-245 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 000003324 e1kf6B1 002988588 Q87N25_nD3 Q87N25 Q87N25_VIBPA VP2050 mltG Endolytic murein transglycosylase 2050 191-338 f a.14 3374 3374.1 3374.1.1 a+b complex topology spore cortex-lytic enzyme catalytic domain spore cortex-lytic enzyme catalytic domain spore cortex-lytic enzyme catalytic domain 000998962 e2r1fA1 002988589 Q87N25_nD1 Q87N25 Q87N25_VIBPA VP2050 mltG Endolytic murein transglycosylase 2050 6-110 f a.14 3536 3536.1 3536.1.1 a+b complex topology Lmo1499 protein N-terminal domains Lmo1499 protein N-terminal domains Lmo1499 protein N-terminal domains 000185798 e4iiwB1 002988590 Q87N25_nD2 Q87N25 Q87N25_VIBPA VP2050 mltG Endolytic murein transglycosylase 2050 111-190 f a.14 3536 3536.1 3536.1.1 a+b complex topology Lmo1499 protein N-terminal domains Lmo1499 protein N-terminal domains Lmo1499 protein N-terminal domains 000998963 e2r1fA2 002988591 Q87IY9_nD1 Q87IY9 Q87IY9_VIBPA VPA0467 3546 1-523 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001142662 e3j5sD1 002988592 Q87LJ9_nD1 Q87LJ9 YQGF_VIBPA VP2613 Putative pre-16S rRNA nuclease 2612 1-140 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011158 e1nu0A1 002988593 Q87M08_nD1 Q87M08 Q87M08_VIBPA VP2450 2450 6-135 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002587 e1s3jA1 002988594 Q87ML1_nD1 Q87ML1 Q87ML1_VIBPA VP2220 Heme exporter protein D 2220 16-40 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002988595 Q87HI6_nD1 Q87HI6 Q87HI6_VIBPA VPA0977 4056 1-169 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002707129 e7kyjB1 002988596 Q87PA7_nD3 Q87PA7 Q87PA7_VIBPA VP1610 1610 216-245 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002794632 e7eu1L1 002988597 Q87PA7_nD4 Q87PA7 Q87PA7_VIBPA VP1610 1610 246-405 f a.7 633 633.23 633.23.1 alpha bundles Bromodomain-like Claudin Claudin 002093240 e5vouF1 002988598 Q87PA7_nD2 Q87PA7 Q87PA7_VIBPA VP1610 1610 51-215 f a.7 633 633.23 633.23.1 alpha bundles Bromodomain-like Claudin Claudin 002766148 e7oceJ1 002988599 Q87PA7_nD1 Q87PA7 Q87PA7_VIBPA VP1610 1610 11-50 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002794632 e7eu1L1 002988600 Q87KC0_nD2 Q87KC0 Q87KC0_VIBPA VP3057 3056 101-180 f a.17 3010 3010.1 3010.1.1 a/b three-layered sandwiches C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains 001117764 e4fw9A5 002988601 Q87KC0_nD1 Q87KC0 Q87KC0_VIBPA VP3057 3056 1-100 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001113231 e1xhkB1 002988602 Q87KC0_nD4 Q87KC0 Q87KC0_VIBPA VP3057 3056 426-500 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002810547 e7plo34 002988603 Q87KC0_nD3 Q87KC0 Q87KC0_VIBPA VP3057 3056 186-420 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001828414 e4zpxA1 002988604 Q87P54_nD1 Q87P54 Q87P54_VIBPA VP1664 1664 66-120 f a.7 3846 3846.1 3846.1.1 alpha bundles IcmR IcmR IcmR 001007238 e4eyyR1 002988605 Q87II0_nD1 Q87II0 Q87II0_VIBPA VPA0626 3705 1-230 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001123520 e4nbwA1 002988606 Q87KK0_nD3 Q87KK0 Q87KK0_VIBPA VP2977 Lipoprotein 2976 236-340 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001402068 e4u3qB1 002988607 Q87KK0_nD4 Q87KK0 Q87KK0_VIBPA VP2977 Lipoprotein 2976 361-500 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 001557583 e4tqjB1 002988608 Q87KK0_nD2 Q87KK0 Q87KK0_VIBPA VP2977 Lipoprotein 2976 141-230 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001402068 e4u3qB1 002988609 Q87KK0_nD1 Q87KK0 Q87KK0_VIBPA VP2977 Lipoprotein 2976 36-140 f a.1 2 2.20 2.20.1 beta barrels OB-fold NlpE C-terminal domain NlpE C-terminal domain 001082806 e2z4hB2 002988610 Q87R43_nD1 Q87R43 Q87R43_VIBPA VP0955 Ferredoxin 955 1-105 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005471 e7fd1A1 002988611 Q87GY4_nD1 Q87GY4 TKT2_VIBPA VPA1181 tkt2 Transketolase 2 4260 1-330 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002081191 e5nd5A2 002988612 Q87GY4_nD2 Q87GY4 TKT2_VIBPA VPA1181 tkt2 Transketolase 2 4260 331-525 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 000110820 e1qgdB2 002988613 Q87GY4_nD3 Q87GY4 TKT2_VIBPA VPA1181 tkt2 Transketolase 2 4260 526-663 f a.17 7522 7522.1 7522.1.1 a/b three-layered sandwiches TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like 002075526 e5vrbB2 002988614 Q87JZ4_nD1 Q87JZ4 Q87JZ4_VIBPA VPA0104 3183 6-80 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160787 e4mymA6 002988615 Q87JZ4_nD2 Q87JZ4 Q87JZ4_VIBPA VPA0104 3183 81-135 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160853 e2qntA3 002988616 Q87RJ6_nD1 Q87RJ6 CYSZ_VIBPA VP0798 cysZ Sulfate transporter CysZ 798 6-55,76-245 f a.10 5076 5076.2 5076.2.1 alpha complex topology Mitochondrial ADP/ATP carrier-like Putative sulfate permease CysZ Putative sulfate permease CysZ 001146560 e3tx3A1 002988617 Q87QE2_nD2 Q87QE2 Q87QE2_VIBPA VP1207 1207 366-550 f a.14 805 805.1 805.1.1 a+b complex topology 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 000007582 e2z1aA1 002988618 Q87QE2_nD1 Q87QE2 Q87QE2_VIBPA VP1207 1207 26-365 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000087627 e1ho5A2 002988619 Q87RT0_nD1 Q87RT0 XNI_VIBPA VP0697 xni Flap endonuclease Xni 697 1-165 f a.17 2006 2006.1 2006.1.4 a/b three-layered sandwiches HAD domain-like HAD domain-related PIN domain-like 002074671 e3zd8B1 002988620 Q87RT0_nD2 Q87RT0 XNI_VIBPA VP0697 xni Flap endonuclease Xni 697 166-260 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 002168201 e6c33A2 002988621 Q87KC6_nD1 Q87KC6 Q87KC6_VIBPA VP3051 DUF1040 family protein 3050 6-88 f a.6 3094 3094.1 3094.1.1 alpha arrays Uncharacterized protein yihD Uncharacterized protein yihD Uncharacterized protein yihD 000119227 e2ko6A1 002988622 Q87RH9_nD2 Q87RH9 Q87RH9_VIBPA VP0815 DUF2116 family Zn-ribbon domain-containing protein 815 36-60 f a.7 3928 3928.1 3928.1.1 alpha bundles Cell division protein CrgA Cell division protein CrgA Cell division protein CrgA 001487328 e2mmuA1 002988623 Q87RH9_nD1 Q87RH9 Q87RH9_VIBPA VP0815 DUF2116 family Zn-ribbon domain-containing protein 815 1-30 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002784275 e7oqyP1 002988624 Q87PR0_nD2 Q87PR0 Q87PR0_VIBPA VP1441 1441 6-35,311-355 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001756673 e3vkgA15 002988625 Q87PR0_nD1 Q87PR0 Q87PR0_VIBPA VP1441 1441 36-305 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001005116 e4jgoB1 002988626 Q87PR0_nD3 Q87PR0 Q87PR0_VIBPA VP1441 1441 356-510 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002988627 Q87GB2_nD1 Q87GB2 Q87GB2_VIBPA VPA1405 4484 31-100 f a.11 6016 6016.1 6016.1.1 a+b two layers Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza 001393163 e2j58E2 002988628 Q87GB2_nD2 Q87GB2 Q87GB2_VIBPA VPA1405 4484 101-175 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002988629 Q87KE7_nD1 Q87KE7 Q87KE7_VIBPA VP3029 HTH_33 domain-containing protein 3029 1-50 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002623825 e6l0oA1 002988630 Q87G90_nD1 Q87G90 Q87G90_VIBPA VPA1427 4506 1-215 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001482577 e4uavA1 002988631 Q87SD1_nD1 Q87SD1 Q87SD1_VIBPA VP0493 Ribonuclease regulator 493 36-159 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002988632 Q87PX1_nD1 Q87PX1 Q87PX1_VIBPA VP1379 1379 16-215 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002988633 Q87RN5_nD2 Q87RN5 HEM1_VIBPA VP0742 hemA Glutamyl-tRNA reductase 742 161-415 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002504197 e5ceeA1 002988634 Q87RN5_nD1 Q87RN5 HEM1_VIBPA VP0742 hemA Glutamyl-tRNA reductase 742 1-155 f a.11 304 304.41 304.41.1 a+b two layers Alpha-beta plaits Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase catalytic, N-terminal domain 001291622 e4n7rA1 002988635 Q87LA4_nD1 Q87LA4 Q87LA4_VIBPA VP2708 2707 11-40,136-155 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002988636 Q87LA4_nD2 Q87LA4 Q87LA4_VIBPA VP2708 2707 41-135 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001283430 e4onxF1 002988637 Q87LA4_nD3 Q87LA4 Q87LA4_VIBPA VP2708 2707 156-645 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002988638 Q87NK0_nD1 Q87NK0 Q87NK0_VIBPA VP1868 1868 6-190 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000136272 e3igrA1 002988639 Q87P09_nD1 Q87P09 Q87P09_VIBPA VP1709 pgl 6-phosphogluconolactonase 1709 1-238 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 000364005 e3e7fB1 002988640 Q87H82_nD1 Q87H82 Q87H82_VIBPA VPA1083 rbsK Ribokinase 4162 1-300 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000009516 e1rkdA1 002988641 Q87S81_nD1 Q87S81 MURQ1_VIBPA VP0543 murQ1 N-acetylmuramic acid 6-phosphate etherase 1 543 6-230 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001144909 e4lzjB1 002988642 Q87S81_nD2 Q87S81 MURQ1_VIBPA VP0543 murQ1 N-acetylmuramic acid 6-phosphate etherase 1 543 231-305 f a.6 103 103.13 103.13.1 alpha arrays RuvA-C C-terminal lid domain of glucokinase regulatory protein C-terminal lid domain of glucokinase regulatory protein 001272126 e3w0lB4 002988643 Q87Q79_nD2 Q87Q79 Q87Q79_VIBPA VP1271 Isoprenylcysteine carboxylmethyltransferase family protein 1271 36-153 f a.7 3447 3447.1 3447.1.1 alpha bundles Isoprenylcysteine carboxyl methyltransferase (ICMT) Isoprenylcysteine carboxyl methyltransferase (ICMT) Isoprenylcysteine carboxyl methyltransferase (ICMT) 002142014 e5v7pA1 002988644 Q87Q79_nD1 Q87Q79 Q87Q79_VIBPA VP1271 Isoprenylcysteine carboxylmethyltransferase family protein 1271 11-35 f a.7 3928 3928.1 3928.1.1 alpha bundles Cell division protein CrgA Cell division protein CrgA Cell division protein CrgA 001487328 e2mmuA1 002988645 Q87SI2_nD2 Q87SI2 Q87SI2_VIBPA VP0441 Ubiquinol-cytochrome c reductase iron-sulfur subunit 441 46-190 f a.3 66 66.1 66.1.1 beta sandwiches ISP domain ISP domain ISP domain 002126067 e2a06R3 002988646 Q87SI2_nD1 Q87SI2 Q87SI2_VIBPA VP0441 Ubiquinol-cytochrome c reductase iron-sulfur subunit 441 11-45 f a.21 5014 5014.1 5014.1.1 extended segments iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor 001605509 e2qjkI2 002988647 Q87MV6_nD1 Q87MV6 Q87MV6_VIBPA VP2125 2125 6-460 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002988648 Q87G33_nD2 Q87G33 Q87G33_VIBPA VPA1484 MFS transporter 4563 201-390 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160547 e2gfpA2 002988649 Q87G33_nD1 Q87G33 Q87G33_VIBPA VPA1484 MFS transporter 4563 6-195 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002137981 e6ei3A2 002988650 Q87NU7_nD2 Q87NU7 Q87NU7_VIBPA VP1771 1771 321-423 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001192792 e4ffcA3 002988651 Q87NU7_nD1 Q87NU7 Q87NU7_VIBPA VP1771 1771 6-320 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001151876 e1sffD2 002988652 Q87H28_nD2 Q87H28 Q87H28_VIBPA VPA1137 4216 176-445 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002810966 e7oseA2 002988653 Q87H28_nD1 Q87H28 Q87H28_VIBPA VPA1137 4216 1-175 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002542985 e6rkoA2 002988654 Q87MB7_nD2 Q87MB7 Q87MB7_VIBPA VP2339 Chemotaxis protein 2339 81-225 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 000154438 e2lemA1 002988655 Q87MB7_nD1 Q87MB7 Q87MB7_VIBPA VP2339 Chemotaxis protein 2339 26-80,226-245 f a.15 833 833.1 833.1.1 a+b duplicates or obligate multimers Pepsin inhibitor-3 Pepsin inhibitor-3 Pepsin inhibitor-3 000081556 e1f34B1 002988656 Q87ME4_nD2 Q87ME4 Q87ME4_VIBPA VP2311 Zinc metalloprotease 2311 6-120,336-450 f a.6 4070 4070.1 4070.1.1 alpha arrays FtsH protease domain-like FtsH protease domain-like FtsH protease domain-like 000185066 e3b4rA1 002988657 Q87ME4_nD1 Q87ME4 Q87ME4_VIBPA VP2311 Zinc metalloprotease 2311 126-220,311-320 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 002448155 e6akqA2 002988658 Q87ME4_nD3 Q87ME4 Q87ME4_VIBPA VP2311 Zinc metalloprotease 2311 221-310 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 002448155 e6akqA2 002988659 Q79YX8_nD2 Q79YX8 Q79YX8_VIBPA VP1557 1557 31-114 f a.7 3812 3812.1 3812.1.1 alpha bundles Type III secretion protein YscE Type III secretion protein YscE Type III secretion protein YscE 001507062 e1zw0H1 002988660 Q79YX8_nD1 Q79YX8 Q79YX8_VIBPA VP1557 1557 6-30 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 002649753 e6kswB1 002988661 Q87RB2_nD1 Q87RB2 Q87RB2_VIBPA VP0885 885 31-203 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 001146605 e3wjtA1 002988662 Q87HP8_nD1 Q87HP8 Q87HP8_VIBPA VPA0915 Universal stress protein 3994 1-129 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009855 e1jmvA1 002988663 Q87FJ7_nD1 Q87FJ7 Q87FJ7_VIBPA VPA1682 4761 11-150 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000332706 e2pexB1 002988664 Q87LM7_nD1 Q87LM7 Q87LM7_VIBPA VP2584 tRNA_edit domain-containing protein 2583 21-170 f a.14 299 299.1 299.1.1 a+b complex topology YbaK/ProRS associated domain YbaK/ProRS associated domain YbaK/ProRS associated domain 000293037 e2cx5D1 002988665 Q87KT3_nD2 Q87KT3 Q87KT3_VIBPA VP2893 2892 201-320 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 002068772 e3ly7A3 002988666 Q87KT3_nD1 Q87KT3 Q87KT3_VIBPA VP2893 2892 1-110 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002067753 e5ju7A1 002988667 Q87KT3_nD3 Q87KT3 Q87KT3_VIBPA VP2893 2892 321-515 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001182321 e3ly8A4 002988668 Q87LH7_nD1 Q87LH7 Q87LH7_VIBPA VP2635 2634 6-100 f a.7 604 604.10 604.10.1 alpha bundles Spectrin repeat-like Enzyme IIa from lactose specific PTS, IIa-lac Enzyme IIa from lactose specific PTS, IIa-lac 000374787 e3k1sD1 002988669 Q87FF3_nD3 Q87FF3 Q87FF3_VIBPA VPA1726 Bifunctional protein PutA 4805 531-810 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002061411 e5ujuA1 002988670 Q87FF3_nD4 Q87FF3 Q87FF3_VIBPA VPA1726 Bifunctional protein PutA 4805 811-1030 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002790771 e7mybB4 002988671 Q87FF3_nD2 Q87FF3 Q87FF3_VIBPA VPA1726 Bifunctional protein PutA 4805 1-65,186-525 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002716204 e6x9aA3 002988672 Q87FF3_nD1 Q87FF3 Q87FF3_VIBPA VPA1726 Bifunctional protein PutA 4805 66-185 f a.21 503 503.1 503.1.1 extended segments N-terminal domain of bifunctional PutA protein N-terminal domain of bifunctional PutA protein N-terminal domain of bifunctional PutA protein 002098043 e5ur2D4 002988673 Q87LI7_nD1 Q87LI7 TRMB_VIBPA VP2625 trmB tRNA (guanine-N(7)-)-methyltransferase 2624 11-239 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000134870 e3dxxA1 002988674 Q87MS6_nD1 Q87MS6 Q87MS6_VIBPA VP2155 DUF2989 domain-containing protein 2155 26-270 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001086915 e4bwrA1 002988675 Q87FK2_nD1 Q87FK2 Q87FK2_VIBPA VPA1677 DUF4178 domain-containing protein 4756 11-170 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 001412230 e4rnlB1 002988676 Q87S58_nD1 Q87S58 Q87S58_VIBPA VP0566 566 1-84 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000136060 e3eunA1 002988677 Q87P38_nD2 Q87P38 Q87P38_VIBPA VP1680 Cation transporter 1680 121-155,181-255,291-430,481-490 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002988678 Q87P38_nD1 Q87P38 Q87P38_VIBPA VP1680 Cation transporter 1680 56-120 f a.6 108 108.1 108.1.1 alpha arrays EF-hand EF-hand-related EF-hand 001756093 e2jq6A1 002988679 Q87P38_nD3 Q87P38 Q87P38_VIBPA VP1680 Cation transporter 1680 431-480 f 002988680 Q87HL9_nD6 Q87HL9 Q87HL9_VIBPA VPA0944 4023 731-835 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 001312389 e4k0eA8 002988681 Q87HL9_nD2 Q87HL9 Q87HL9_VIBPA VPA0944 4023 191-270 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002988682 Q87HL9_nD5 Q87HL9 Q87HL9_VIBPA VPA0944 4023 566-685 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816517 e7cz9B4 002988683 Q87HL9_nD8 Q87HL9 Q87HL9_VIBPA VPA0944 4023 511-565,911-1100 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002988684 Q87HL9_nD7 Q87HL9 Q87HL9_VIBPA VPA0944 4023 686-730,836-910 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001312388 e4k0eA7 002988685 Q87HL9_nD1 Q87HL9 Q87HL9_VIBPA VPA0944 4023 46-140 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002672273 e6vejC1 002988686 Q87HL9_nD3 Q87HL9 Q87HL9_VIBPA VPA0944 4023 141-190,271-340 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834886 e4dntA6 002988687 Q87HL9_nD4 Q87HL9 Q87HL9_VIBPA VPA0944 4023 1-45,341-505 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002816519 e7cz9B6 002988688 Q87HW7_nD4 Q87HW7 Q87HW7_VIBPA VPA0839 HD-GYP domain-containing protein 3918 376-580 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 001503459 e4r8zA1 002988689 Q87HW7_nD3 Q87HW7 Q87HW7_VIBPA VPA0839 HD-GYP domain-containing protein 3918 341-375 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002988690 Q87HW7_nD1 Q87HW7 Q87HW7_VIBPA VPA0839 HD-GYP domain-containing protein 3918 31-150,276-305 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001296448 e4pevB2 002988691 Q87HW7_nD2 Q87HW7 Q87HW7_VIBPA VPA0839 HD-GYP domain-containing protein 3918 151-275,306-340 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001873963 e3lkvA2 002988692 Q87S48_nD1 Q87S48 PSTB1_VIBPA VP0576 pstB1 Phosphate import ATP-binding protein PstB 1 576 16-270 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002988693 Q87SE6_nD1 Q87SE6 Q87SE6_VIBPA VP0478 478 16-310 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002063585 e5k7vC1 002988694 Q87L59_nD2 Q87L59 Q87L59_VIBPA VP2753 2752 171-240 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011266 e1nm3A1 002988695 Q87L59_nD1 Q87L59 Q87L59_VIBPA VP2753 2752 1-165 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011332 e1nm3A2 002988696 Q87RH8_nD1 Q87RH8 Q87RH8_VIBPA VP0816 Phosphoesterase 816 1-180 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000087685 e1su1B1 002988697 Q87TC7_nD1 Q87TC7 Q87TC7_VIBPA VP0143 Type II secretion system protein N 143 21-220 f a.14 3173 3173.1 3173.1.1 a+b complex topology Colicin M-related Colicin M-related Colicin M-related 000146951 e2xmxA1 002988698 Q87TC7_nD2 Q87TC7 Q87TC7_VIBPA VP0143 Type II secretion system protein N 143 221-245 f a.14 3173 3173.1 3173.1.1 a+b complex topology Colicin M-related Colicin M-related Colicin M-related 001005588 e4g75A1 002988699 Q87M13_nD1 Q87M13 Q87M13_VIBPA VP2445 ubiT Ubiquinone biosynthesis accessory factor UbiT 2445 6-160 f a.11 268 268.1 268.1.1 a+b two layers Sterol carrier protein-like Sterol carrier protein, SCP-related Sterol carrier protein, SCP-related 001422931 e4nurA3 002988700 Q87FP1_nD1 Q87FP1 Q87FP1_VIBPA VPA1637 Sel1 repeat family protein 4716 6-345 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001086915 e4bwrA1 002988701 Q87IK1_nD1 Q87IK1 Q87IK1_VIBPA VPA0605 DUF3024 domain-containing protein 3684 11-130 f a.11 241 241.2 241.2.1 a+b two layers Type III secretory system chaperone-like Frataxin-like Frataxin-like 002442017 e6fcoC1 002988702 Q87RG2_nD1 Q87RG2 Q87RG2_VIBPA VP0835 Flavodoxin 835 1-170 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 000329750 e2v5uB1 002988703 Q87LG3_nD1 Q87LG3 Q87LG3_VIBPA VP2649 Beta-galactosidase 2648 1-160 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002434047 e6bycA1 002988704 Q87LG3_nD2 Q87LG3 Q87LG3_VIBPA VP2649 Beta-galactosidase 2648 161-260 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000033558 e2vzsB2 002988705 Q87GT7_nD1 Q87GT7 Q87GT7_VIBPA VPA1228 4307 1-135,271-295 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001394320 e2o4uX2 002988706 Q87GT7_nD2 Q87GT7 Q87GT7_VIBPA VPA1228 4307 136-270,296-325 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 001711081 e4nheC2 002988707 Q87JZ2_nD2 Q87JZ2 Q87JZ2_VIBPA VPA0106 DUF1254 domain-containing protein 3185 201-435 f a.3 10 10.18 10.18.1 beta sandwiches jelly-roll VPA0735-like VPA0735-like 001290126 e3u07B1 002988708 Q87JZ2_nD1 Q87JZ2 Q87JZ2_VIBPA VPA0106 DUF1254 domain-containing protein 3185 13-195 f a.3 10 10.18 10.18.1 beta sandwiches jelly-roll VPA0735-like VPA0735-like 001290127 e3u07B2 002988709 Q87Q59_nD2 Q87Q59 SYFB_VIBPA VP1291 pheT Phenylalanine--tRNA ligase beta subunit 1291 41-150 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002703018 e7db8B3 002988710 Q87Q59_nD5 Q87Q59 SYFB_VIBPA VP1291 pheT Phenylalanine--tRNA ligase beta subunit 1291 491-700 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 001276425 e3pcoD10 002988711 Q87Q59_nD1 Q87Q59 SYFB_VIBPA VP1291 pheT Phenylalanine--tRNA ligase beta subunit 1291 1-40,151-190 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001145926 e2rhsB1 002988712 Q87Q59_nD6 Q87Q59 SYFB_VIBPA VP1291 pheT Phenylalanine--tRNA ligase beta subunit 1291 706-800 f a.11 304 304.18 304.18.1 a+b two layers Alpha-beta plaits Anticodon-binding domain of PheRS Anticodon-binding domain of PheRS 001298493 e4p72A1 002988713 Q87Q59_nD3 Q87Q59 SYFB_VIBPA VP1291 pheT Phenylalanine--tRNA ligase beta subunit 1291 191-400 f a.5 865 865.1 865.1.1 beta complex topology PheT/TilS domain PheT/TilS domain PheT/TilS domain 002703019 e7db8B4 002988714 Q87Q59_nD4 Q87Q59 SYFB_VIBPA VP1291 pheT Phenylalanine--tRNA ligase beta subunit 1291 401-475 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001145929 e2rhsB4 002988715 Q87IE1_nD1 Q87IE1 Q87IE1_VIBPA VPA0665 Ovule protein 3744 86-120 f a.21 6074 6074.1 6074.1.1 extended segments Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein 002795863 e7fffG3 002988716 Q87GG5_nD1 Q87GG5 Q87GG5_VIBPA VPA1351 Sporulation protein 4430 1-90 f a.3 73 73.1 73.1.1 beta sandwiches SMAD/FHA domain SMAD/FHA domain SMAD/FHA domain 001013133 e4g2sE1 002988717 Q87GG5_nD2 Q87GG5 Q87GG5_VIBPA VPA1351 Sporulation protein 4430 96-145 f a.21 5005 5005.1 5005.1.1 extended segments Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc Mitochondrial cytochrome c oxidase subunit VIc 000183218 e2ybbT1 002988718 Q87GG5_nD5 Q87GG5 Q87GG5_VIBPA VPA1351 Sporulation protein 4430 271-335 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 001688440 e4wfwA1 002988719 Q87GG5_nD3 Q87GG5 Q87GG5_VIBPA VPA1351 Sporulation protein 4430 186-215 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002702009 e7cikB2 002988720 Q87GG5_nD4 Q87GG5 Q87GG5_VIBPA VPA1351 Sporulation protein 4430 216-260 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 000157557 e1yj7A2 002988721 Q87KU1_nD1 Q87KU1 DUSB_VIBPA VP2884 dusB tRNA-dihydrouridine synthase B 2883 1-320 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001492474 e4xp7A1 002988722 Q87MZ9_nD3 Q87MZ9 Q87MZ9_VIBPA VP2077 2077 526-608 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 000001970 e1wzlA2 002988723 Q87MZ9_nD1 Q87MZ9 Q87MZ9_VIBPA VP2077 2077 1-110 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000032608 e1uh2A1 002988724 Q87MZ9_nD2 Q87MZ9 Q87MZ9_VIBPA VP2077 2077 111-525 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000094351 e1uh2A3 002988725 Q87MA7_nD1 Q87MA7 NQRB_VIBPA VP2350 nqrB Na(+)-translocating NADH-quinone reductase subunit B 2350 1-35 f 002988726 Q87MA7_nD2 Q87MA7 NQRB_VIBPA VP2350 nqrB Na(+)-translocating NADH-quinone reductase subunit B 2350 41-405 f a.10 5049 5049.1 5049.1.3 alpha complex topology Ammonium transporter-related Ammonium transporter-related Na(+)-translocating NADH-quinone reductase subunit B 001447931 e4p6vB1 002988727 Q87J23_nD1 Q87J23 Q87J23_VIBPA VPA0430 Cob_adeno_trans domain-containing protein 3509 1-175 f a.7 150 150.2 150.2.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Cobalamin adenosyltransferase Cobalamin adenosyltransferase 000346149 e2zhzB1 002988728 Q87IB4_nD1 Q87IB4 Q87IB4_VIBPA VPA0692 3771 1-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002988729 Q87IB4_nD2 Q87IB4 Q87IB4_VIBPA VPA0692 3771 96-309 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002988730 Q87JP5_nD2 Q87JP5 CRYD_VIBPA VPA0203 cry Cryptochrome DASH 3282 186-433 f a.10 182 182.1 182.1.1 alpha complex topology Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain 001292092 e4cdnA1 002988731 Q87JP5_nD1 Q87JP5 CRYD_VIBPA VPA0203 cry Cryptochrome DASH 3282 1-185 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001260618 e2vtbA6 002988732 Q87NS1_nD1 Q87NS1 Q87NS1_VIBPA VP1797 RidA family protein 1797 1-123 f a.12 301 301.7 301.7.1 a+b three layers Bacillus chorismate mutase-like YjgF-like YjgF-like 000137973 e3i7tA1 002988733 Q87P47_nD2 Q87P47 Q87P47_VIBPA VP1671 1671 171-235 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 001557787 e4yx5A1 002988734 Q87P47_nD1 Q87P47 Q87P47_VIBPA VP1671 1671 21-165 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 000151996 e4fhrA1 002988735 Q87P47_nD3 Q87P47 Q87P47_VIBPA VP1671 1671 246-320 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 000991007 e3uepB1 002988736 Q87Q30_nD1 Q87Q30 TARI_VIBPA VP1320 Ribitol-5-phosphate cytidylyltransferase 1320 1-238 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002723960 e6xhqA1 002988737 Q87LJ1_nD1 Q87LJ1 IXTPA_VIBPA VP2621 dITP/XTP pyrophosphatase 2620 1-195 f a.17 7504 7504.1 7504.1.1 a/b three-layered sandwiches ITPase-like ITPase-like ITPase-like 001007410 e4bnqA1 002988738 Q87P39_nD1 Q87P39 Q87P39_VIBPA VP1679 Flavodoxin-like domain-containing protein 1679 6-30 f a.7 3711 3711.1 3711.1.1 alpha bundles LTXXQ motif family protein LTXXQ motif family protein LTXXQ motif family protein 001389271 e4clvB1 002988739 Q87P39_nD2 Q87P39 Q87P39_VIBPA VP1679 Flavodoxin-like domain-containing protein 1679 31-210 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 000223507 e4j8pA1 002988740 Q87LP8_nD2 Q87LP8 Q87LP8_VIBPA VP2563 2562 131-263 f a.7 159 159.1 159.1.1 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases Hypothetical protein AF_0060 000185138 e3craA2 002988741 Q87LP8_nD1 Q87LP8 Q87LP8_VIBPA VP2563 2562 1-130 f a.7 159 159.1 159.1.1 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases Hypothetical protein AF_0060 000185137 e3craA1 002988742 Q87RX4_nD1 Q87RX4 Q87RX4_VIBPA VP0652 652 6-415 f a.10 5052 5052.1 5052.1.1 alpha complex topology Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein 001887687 e5dwyB1 002988743 Q87LA1_nD1 Q87LA1 Q87LA1_VIBPA VP2711 UTP--glucose-1-phosphate uridylyltransferase 2710 1-285 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001827894 e5j49B1 002988744 Q87GT8_nD2 Q87GT8 Q87GT8_VIBPA VPA1227 Multidrug resistance protein NorM 4306 236-455 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002440127 e6idpA1 002988745 Q87GT8_nD1 Q87GT8 Q87GT8_VIBPA VPA1227 Multidrug resistance protein NorM 4306 21-235 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002440128 e6idpA2 002988746 Q87Q80_nD2 Q87Q80 Q87Q80_VIBPA VP1270 FAD-binding PCMH-type domain-containing protein 1270 276-550 f a.11 304 304.6 304.6.1 a+b two layers Alpha-beta plaits FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 002790882 e7pbgA2 002988747 Q87Q80_nD5 Q87Q80 Q87Q80_VIBPA VP1270 FAD-binding PCMH-type domain-containing protein 1270 701-720,751-895 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 000223862 e3kwlA3 002988748 Q87Q80_nD1 Q87Q80 Q87Q80_VIBPA VP1270 FAD-binding PCMH-type domain-containing protein 1270 11-275 f a.14 217 217.1 217.1.1 a+b complex topology FAD-binding domain-like FAD-binding domain FAD-binding domain 001631501 e2uuuA1 002988749 Q87Q80_nD6 Q87Q80 Q87Q80_VIBPA VP1270 FAD-binding PCMH-type domain-containing protein 1270 896-1010 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 002115324 e5odcH2 002988750 Q87Q80_nD3 Q87Q80 Q87Q80_VIBPA VP1270 FAD-binding PCMH-type domain-containing protein 1270 551-700 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 002323901 e5odcC1 002988751 Q87Q80_nD4 Q87Q80 Q87Q80_VIBPA VP1270 FAD-binding PCMH-type domain-containing protein 1270 721-750 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002658727 e6y9kDDD1 002988752 Q87Q23_nD1 Q87Q23 Q87Q23_VIBPA VP1327 Transcriptional regulator 1327 6-70 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002101829 e5woqB1 002988753 Q87Q23_nD2 Q87Q23 Q87Q23_VIBPA VP1327 Transcriptional regulator 1327 71-250 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002988754 Q87PA1_nD1 Q87PA1 Q87PA1_VIBPA VP1616 Phospho-2-dehydro-3-deoxyheptonate aldolase 1616 6-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001883448 e5dceD1 002988755 Q87RW4_nD1 Q87RW4 Q87RW4_VIBPA VP0662 Aminobenzoyl-glutamate transporter 662 21-515 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001545111 e4r1iA1 002988756 Q87NB5_nD1 Q87NB5 Q87NB5_VIBPA VP1953 1953 1-205 f a.14 297 297.1 297.1.1 a+b complex topology YrdC/RibB YrdC/RibB YrdC/RibB 000007509 e1k7jA1 002988757 Q87ME1_nD1 Q87ME1 UPPS_VIBPA VP2314 uppS Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) 2314 6-245 f a.17 7534 7534.1 7534.1.1 a/b three-layered sandwiches Undecaprenyl diphosphate synthase Undecaprenyl diphosphate synthase Undecaprenyl diphosphate synthase 000280115 e1x09A1 002988758 Q87PM7_nD1 Q87PM7 Q87PM7_VIBPA VP1474 1474 31-100 f a.11 6016 6016.1 6016.1.1 a+b two layers Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza 001393163 e2j58E2 002988759 Q87PM7_nD4 Q87PM7 Q87PM7_VIBPA VP1474 1474 296-390 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393165 e2j58E4 002988760 Q87PM7_nD3 Q87PM7 Q87PM7_VIBPA VP1474 1474 211-290 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002988761 Q87PM7_nD8 Q87PM7 Q87PM7_VIBPA VP1474 1474 671-695 f a.21 6017 6017.1 6017.1.1 extended segments Transmembrane helix of outer membrane lipoprotein Wza Transmembrane helix of outer membrane lipoprotein Wza Transmembrane helix of outer membrane lipoprotein Wza 001393164 e2j58E3 002988762 Q87PM7_nD5 Q87PM7 Q87PM7_VIBPA VP1474 1474 396-475 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002988763 Q87PM7_nD2 Q87PM7 Q87PM7_VIBPA VP1474 1474 101-180 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002988764 Q87PM7_nD6 Q87PM7 Q87PM7_VIBPA VP1474 1474 491-575 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 000372840 e3iam12 002988765 Q87PM7_nD7 Q87PM7 Q87PM7_VIBPA VP1474 1474 586-670 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393165 e2j58E4 002988766 Q87PA4_nD3 Q87PA4 Q87PA4_VIBPA VP1613 GntR family transcriptional regulator 1613 136-210 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001613752 e3go5A1 002988767 Q87PA4_nD4 Q87PA4 Q87PA4_VIBPA VP1613 GntR family transcriptional regulator 1613 216-275 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001613755 e3go5A4 002988768 Q87PA4_nD1 Q87PA4 Q87PA4_VIBPA VP1613 GntR family transcriptional regulator 1613 1-65 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001613754 e3go5A3 002988769 Q87PA4_nD2 Q87PA4 Q87PA4_VIBPA VP1613 GntR family transcriptional regulator 1613 66-135 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001613754 e3go5A3 002988770 Q87Q94_nD1 Q87Q94 Q87Q94_VIBPA VP1256 1256 16-455 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002988771 Q87IL4_nD1 Q87IL4 Q87IL4_VIBPA VPA0592 Arginase 3671 6-275 f a.17 2006 2006.1 2006.1.5 a/b three-layered sandwiches HAD domain-like HAD domain-related Arginase/deacetylase 002812333 e7esrA1 002988772 Q87I44_nD1 Q87I44 Q87I44_VIBPA VPA0762 3841 1-465 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002988773 Q87KQ7_nD1 Q87KQ7 NUDC_VIBPA VP2919 nudC NAD-capped RNA hydrolase NudC 2918 11-100 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 002770720 e7e44E2 002988774 Q87KQ7_nD2 Q87KQ7 NUDC_VIBPA VP2919 nudC NAD-capped RNA hydrolase NudC 2918 101-130 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000007998 e1vk6A3 002988775 Q87KQ7_nD3 Q87KQ7 NUDC_VIBPA VP2919 nudC NAD-capped RNA hydrolase NudC 2918 131-255 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 001866261 e5iw4B1 002988776 Q87IR3_nD1 Q87IR3 Q87IR3_VIBPA VPA0543 3622 1-325 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002491395 e6a2jA1 002988777 Q877Q6_nD1 Q877Q6 Q877Q6_VIBPA VP1574VPA0900 TMhelix containing protein 1574 6-60 f a.21 3506 3506.1 3506.1.1 extended segments Viral membrane protein P3 Viral membrane protein P3 Viral membrane protein P3 000348922 e2w0cR1 002988778 Q87FT0_nD3 Q87FT0 GBPA_VIBPA VPA1598 gbpA GlcNAc-binding protein A 4677 316-410 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000145325 e2xwxA2 002988779 Q87FT0_nD4 Q87FT0 GBPA_VIBPA VPA1598 gbpA GlcNAc-binding protein A 4677 426-485 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 002736862 e6z41A1 002988780 Q87FT0_nD2 Q87FT0 GBPA_VIBPA VPA1598 gbpA GlcNAc-binding protein A 4677 211-310 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 000145326 e2xwxA3 002988781 Q87FT0_nD1 Q87FT0 GBPA_VIBPA VPA1598 gbpA GlcNAc-binding protein A 4677 26-210 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000145324 e2xwxA1 002988782 Q87LH1_nD1 Q87LH1 Q87LH1_VIBPA VP2641 RDD domain-containing protein 2640 6-155 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002512978 e6r2gA1 002988783 Q87LX0_nD3 Q87LX0 Q87LX0_VIBPA VP2488 2488 266-380 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 001000433 e2z0fB1 002988784 Q87LX0_nD4 Q87LX0 Q87LX0_VIBPA VP2488 2488 381-470 f a.11 331 331.2 331.2.1 a+b two layers TBP-like Phosphoglucomutase, C-terminal domain Phosphoglucomutase, C-terminal domain 001184392 e1wqaC10 002988785 Q87LX0_nD2 Q87LX0 Q87LX0_VIBPA VP2488 2488 161-265 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 001184406 e2f7lB10 002988786 Q87LX0_nD1 Q87LX0 Q87LX0_VIBPA VP2488 2488 1-160 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002074419 e2fuvB5 002988787 Q87S90_nD1 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 6-180,426-480,531-600 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002741414 e6kieA2 002988788 Q87S90_nD6 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 806-900 f a.12 3008 3008.1 3008.1.1 a+b three layers A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 000117133 e1qu2A5 002988789 Q87S90_nD2 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 181-205,406-425 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002488223 e3ziuA2 002988790 Q87S90_nD5 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 621-800 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002489287 e1qu2A2 002988791 Q87S90_nD7 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 901-935 f a.19 377 377.1 377.1.3 few secondary structure elements Glucocorticoid receptor-like LIM domain-like Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 000089756 e1qu2A3 002988792 Q87S90_nD3 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 206-405 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 002697215 e6ldkA2 002988793 Q87S90_nD4 Q87S90 SYI_VIBPA VP0534 ileS Isoleucine--tRNA ligase 534 481-530 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000132929 e1qu2A6 002988794 Q87J96_nD1 Q87J96 Q87J96_VIBPA VPA0357 3436 1-190 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002438914 e6ddtA5 002988795 Q87J96_nD2 Q87J96 Q87J96_VIBPA VPA0357 3436 191-285 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002796409 e7kgzB4 002988796 Q87J96_nD5 Q87J96 Q87J96_VIBPA VPA0357 3436 731-800 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001311845 e4cvuA3 002988797 Q87J96_nD3 Q87J96 Q87J96_VIBPA VPA0357 3436 286-630 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002434048 e6bycA2 002988798 Q87J96_nD4 Q87J96 Q87J96_VIBPA VPA0357 3436 631-730 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002434051 e6bycA5 002988799 Q87QY9_nD1 Q87QY9 Y1009_VIBPA VP1009 UPF0319 protein VP1009 1009 31-165 f a.3 11 11.29 11.29.1 beta sandwiches Immunoglobulin-like beta-sandwich PUD homologs PUD homologs 001117769 e4jdeA1 002988800 Q87QY9_nD2 Q87QY9 Y1009_VIBPA VP1009 UPF0319 protein VP1009 1009 191-215 f a.7 4009 4009.1 4009.1.1 alpha bundles alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins 000342419 e3d0wB1 002988801 Q87TB7_nD1 Q87TB7 Q87TB7_VIBPA VP0153 153 26-70 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002068628 e2efsD1 002988802 Q87TB7_nD2 Q87TB7 Q87TB7_VIBPA VP0153 153 71-125 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000315449 e2ic6B1 002988803 Q87FE5_nD1 Q87FE5 Q87FE5_VIBPA VPA1734 Sulfate adenylyltransferase 4813 27-215 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 001323187 e4u65E1 002988804 Q87K08_nD1 Q87K08 Q87K08_VIBPA VPA0090 Lysine transporter LysE 3169 6-194 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002988805 Q87H33_nD1 Q87H33 Q87H33_VIBPA VPA1132 DUF1840 domain-containing protein 4211 1-55,81-108 f a.14 618 618.1 618.1.1 a+b complex topology DNA mimic protein DMP12-like DNA mimic protein DMP12-related DNA mimic protein DMP12-related 000224413 e3w1oA1 002988806 Q87LP5_nD2 Q87LP5 RLMD_VIBPA VP2566 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 2565 81-439 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002417715 e5zq8A1 002988807 Q87LP5_nD1 Q87LP5 RLMD_VIBPA VP2566 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 2565 1-80 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002130765 e5xj1A1 002988808 Q87S59_nD1 Q87S59 Q87S59_VIBPA VP0565 Aminopeptidase 565 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001145702 e3keyA2 002988809 Q87SQ4_nD1 Q87SQ4 Q87SQ4_VIBPA VP0368 368 1-175 f a.7 3931 3931.1 3931.1.1 alpha bundles MtlR-like MtlR-like MtlR-like 002541711 e6kcrA1 002988810 Q87J95_nD2 Q87J95 Q87J95_VIBPA VPA0358 3437 146-215 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001824335 e4zmsA2 002988811 Q87J95_nD1 Q87J95 Q87J95_VIBPA VPA0358 3437 1-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002388484 e5xp0B1 002988812 Q87T68_nD1 Q87T68 Q87T68_VIBPA VP0202 202 1-115 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 002446656 e6i0oB2 002988813 Q87T68_nD2 Q87T68 Q87T68_VIBPA VP0202 202 116-350 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 000010297 e1tzfA1 002988814 Q87MF9_nD1 Q87MF9 Q87MF9_VIBPA VP2296 2296 67-275 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001526271 e4p11A1 002988815 Q87MF9_nD5 Q87MF9 Q87MF9_VIBPA VP2296 2296 466-528 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 001763067 e4s3jB2 002988816 Q87MF9_nD2 Q87MF9 Q87MF9_VIBPA VP2296 2296 276-340 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 001296954 e2mkxA1 002988817 Q87MF9_nD4 Q87MF9 Q87MF9_VIBPA VP2296 2296 391-465 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002124917 e5jceB1 002988818 Q87MF9_nD3 Q87MF9 Q87MF9_VIBPA VP2296 2296 341-390 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002124917 e5jceB1 002988819 Q87NL4_nD1 Q87NL4 Q87NL4_VIBPA VP1854 Phage portal protein 1854 6-105 f a.11 4020 4020.1 4020.1.1 a+b two layers a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 002393526 e6h65C1 002988820 Q87R19_nD3 Q87R19 Q87R19_VIBPA VP0979 Lipoprotein transporter subunit LolE 979 6-55,261-414 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002988821 Q87R19_nD2 Q87R19 Q87R19_VIBPA VP0979 Lipoprotein transporter subunit LolE 979 101-220 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002988822 Q87R19_nD1 Q87R19 Q87R19_VIBPA VP0979 Lipoprotein transporter subunit LolE 979 56-100,221-260 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002390059 e6f3zA2 002988823 Q87N06_nD2 Q87N06 Q87N06_VIBPA VP2070 NIT domain-containing protein 2070 26-135 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 001546262 e4uosA1 002988824 Q87N06_nD1 Q87N06 Q87N06_VIBPA VP2070 NIT domain-containing protein 2070 1-25 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001147803 e4akkA1 002988825 Q87N06_nD3 Q87N06 Q87N06_VIBPA VP2070 NIT domain-containing protein 2070 146-255 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001406524 e4akkA2 002988826 Q87QL1_nD1 Q87QL1 HISX_VIBPA VP1138 hisD Histidinol dehydrogenase 1138 21-230,381-390 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901958 e1kaeB1 002988827 Q87QL1_nD2 Q87QL1 HISX_VIBPA VP1138 hisD Histidinol dehydrogenase 1138 231-380 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002104121 e6an0A2 002988828 Q87QL1_nD3 Q87QL1 HISX_VIBPA VP1138 hisD Histidinol dehydrogenase 1138 391-425 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901948 e1k75B1 002988829 Q87QS5_nD1 Q87QS5 Q87QS5_VIBPA VP1074 DUF4181 domain-containing protein 1074 21-129 f a.7 622 622.4 622.4.1 alpha bundles YvfG-like Mite allergen Der p 5-related Mite allergen Der p 5-related 002460133 e5ynxB1 002988830 Q87PG0_nD1 Q87PG0 Q87PG0_VIBPA VP1542 1542 6-35 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002988831 Q87IX5_nD6 Q87IX5 Q87IX5_VIBPA VPA0481 3560 496-570 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000135570 e3e6zX1 002988832 Q87IX5_nD1 Q87IX5 Q87IX5_VIBPA VPA0481 3560 166-210 f a.7 6119 6119.1 6119.1.1 alpha bundles Helical bundle domain in CusB Helical bundle domain in CusB Helical bundle domain in CusB 001103158 e3ne5C4 002988833 Q87IX5_nD2 Q87IX5 Q87IX5_VIBPA VPA0481 3560 126-165,211-250 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 002528943 e3lnnB3 002988834 Q87IX5_nD5 Q87IX5 Q87IX5_VIBPA VPA0481 3560 416-490 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000135570 e3e6zX1 002988835 Q87IX5_nD3 Q87IX5 Q87IX5_VIBPA VPA0481 3560 111-125,251-330 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145751 e3lnnA2 002988836 Q87IX5_nD4 Q87IX5 Q87IX5_VIBPA VPA0481 3560 91-110,331-410 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001103156 e3ne5C2 002988837 Q87ND0_nD1 Q87ND0 Q87ND0_VIBPA VP1938 DUF3943 domain-containing protein 1938 111-130,152-280 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 000869562 e4huqS1 002988838 Q87QG7_nD2 Q87QG7 Q87QG7_VIBPA VP1182 1182 256-395 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001152680 e1cl2B2 002988839 Q87QG7_nD1 Q87QG7 Q87QG7_VIBPA VP1182 1182 6-255 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001152681 e1cl2B3 002988840 P64128_nD1 P64128 FIS_VIBPA VP2885 fis DNA-binding protein Fis 2884 11-98 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002988841 Q87FY3_nD1 Q87FY3 Q87FY3_VIBPA VPA1537 fliE Flagellar hook-basal body complex protein FliE 4616 46-115 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000315449 e2ic6B1 002988842 Q87FH2_nD1 Q87FH2 Q87FH2_VIBPA VPA1707 4786 1-320 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000138325 e3lhxA1 002988843 Q87KS7_nD1 Q87KS7 Q87KS7_VIBPA VP2899 DUF1481 domain-containing protein 2898 41-160 f a.2 77 77.1 77.1.1 beta meanders open-sided beta-meander Outer surface protein Outer surface protein 001099835 e2fkjA3 002988844 Q87KS7_nD2 Q87KS7 Q87KS7_VIBPA VP2899 DUF1481 domain-containing protein 2898 161-240 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000987901 e4gnxX1 002988845 Q87IN3_nD1 Q87IN3 Q87IN3_VIBPA VPA0573 3652 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002988846 Q87IN3_nD2 Q87IN3 Q87IN3_VIBPA VPA0573 3652 91-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002723526 e6yizA1 002988847 Q87IV0_nD1 Q87IV0 Q87IV0_VIBPA VPA0506 DUF1236 domain-containing protein 3585 101-165 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000165698 e2r9vA3 002988848 Q87IV0_nD2 Q87IV0 Q87IV0_VIBPA VPA0506 DUF1236 domain-containing protein 3585 228-260 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002409393 e6e14C1 002988849 Q87Q07_nD1 Q87Q07 Q87Q07_VIBPA VP1343 1343 6-325 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002988850 Q87KA2_nD3 Q87KA2 Q87KA2_VIBPA VP3076 3075 101-125 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002388911 e6cc4A3 002988851 Q87KA2_nD1 Q87KA2 Q87KA2_VIBPA VP3076 3075 11-35 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000415013 e3ob6B1 002988852 Q87KA2_nD2 Q87KA2 Q87KA2_VIBPA VP3076 3075 36-100 f a.21 3493 3493.1 3493.1.1 extended segments Photosystem II PsbX protein Photosystem II PsbX protein Photosystem II PsbX protein 001726572 e4yuux11 002988853 Q87K46_nD1 Q87K46 Q87K46_VIBPA VPA0052 Acyl_transf_3 domain-containing protein 3131 6-340 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002473003 e6nc9A2 002988854 Q87MS8_nD1 Q87MS8 Q87MS8_VIBPA VP2153 asparaginase 2153 1-205 f a.17 7546 7546.1 7546.1.1 a/b three-layered sandwiches Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain 001176658 e2ocdB3 002988855 Q87MS8_nD2 Q87MS8 Q87MS8_VIBPA VP2153 asparaginase 2153 206-335 f a.17 7507 7507.1 7507.1.1 a/b three-layered sandwiches Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain 001176649 e2d6fB4 002988856 Q87M93_nD1 Q87M93 Q87M93_VIBPA VP2365 Cysteine desulfurase 2365 1-330 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002561578 e6ndnA1 002988857 Q87M93_nD2 Q87M93 Q87M93_VIBPA VP2365 Cysteine desulfurase 2365 316-403 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002553605 e6i33A1 002988858 Q87MK7_nD1 Q87MK7 Q87MK7_VIBPA VP2224 DNA repair protein 2224 16-135 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002816307 e6z26B1 002988859 Q87HK6_nD3 Q87HK6 Q87HK6_VIBPA VPA0957 4036 116-135,261-330,521-550 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001558839 e4tozB2 002988860 Q87HK6_nD4 Q87HK6 Q87HK6_VIBPA VPA0957 4036 331-520 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002168150 e5yh8A2 002988861 Q87HK6_nD2 Q87HK6 Q87HK6_VIBPA VPA0957 4036 136-260 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002820817 e7og0B2 002988862 Q87HK6_nD1 Q87HK6 Q87HK6_VIBPA VPA0957 4036 1-115 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001298616 e4pt7C1 002988863 P22101_nD1 P22101 TRPG_VIBPA VP1957 trpG Anthranilate synthase component 2 1957 1-190 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000104134 e1i7qD1 002988864 Q87MS1_nD2 Q87MS1 Q87MS1_VIBPA VP2160 2160 41-278 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000009327 e1p91A2 002988865 Q87MS1_nD1 Q87MS1 Q87MS1_VIBPA VP2160 2160 1-40 f a.19 4294 4294.1 4294.1.1 few secondary structure elements Trm112p-like Trm112p-like Trm112p-like 000008065 e1p91A1 002988866 Q87NX3_nD1 Q87NX3 Q87NX3_VIBPA VP1745 lpxL Lipid A biosynthesis lauroyltransferase 1745 16-310 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 001890022 e5knkB1 002988867 Q87SM8_nD1 Q87SM8 Q87SM8_VIBPA VP0394 site-specific DNA-methyltransferase (adenine-specific) 394 1-215 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001683738 e4zcfA1 002988868 Q87R45_nD5 Q87R45 Q87R45_VIBPA VP0953 GGDEF domain-containing protein 953 471-655 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 000412326 e3pjxA1 002988869 Q87R45_nD2 Q87R45 Q87R45_VIBPA VP0953 GGDEF domain-containing protein 953 101-185 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002323815 e5gzsA2 002988870 Q87R45_nD1 Q87R45 Q87R45_VIBPA VP0953 GGDEF domain-containing protein 953 26-100,186-230 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002988871 Q87R45_nD4 Q87R45 Q87R45_VIBPA VP0953 GGDEF domain-containing protein 953 336-430 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002323817 e5gzsA4 002988872 Q87R45_nD3 Q87R45 Q87R45_VIBPA VP0953 GGDEF domain-containing protein 953 236-335,431-470 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002988873 Q87TR0_nD2 Q87TR0 Q87TR0_VIBPA VP0008 8 111-200 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002627878 e2ia4B2 002988874 Q87TR0_nD1 Q87TR0 Q87TR0_VIBPA VP0008 8 21-110,201-245 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002988875 Q87NK8_nD1 Q87NK8 Q87NK8_VIBPA VP1860 ClbS/DfsB family four-helix bundle protein 1860 6-169 f a.7 620 620.1 620.1.1 alpha bundles YfiT-like putative metal-dependent hydrolases YfiT-like putative metal-dependent hydrolases YfiT-like putative metal-dependent hydrolases 002388861 e6anrA1 002988876 Q87HT3_nD4 Q87HT3 Q87HT3_VIBPA VPA0873 3952 396-420 f a.6 106 106.1 106.1.1 alpha arrays Globin-like Globin-like Globin-like 002410635 e6m9aC1 002988877 Q87HT3_nD3 Q87HT3 Q87HT3_VIBPA VPA0873 3952 371-395 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002705927 e7kgvB1 002988878 Q87HT3_nD1 Q87HT3 Q87HT3_VIBPA VPA0873 3952 81-185 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002988879 Q87HT3_nD6 Q87HT3 Q87HT3_VIBPA VPA0873 3952 426-510,626-790 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002774948 e7arlE1 002988880 Q87HT3_nD5 Q87HT3 Q87HT3_VIBPA VPA0873 3952 511-625 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002988881 Q87HT3_nD2 Q87HT3 Q87HT3_VIBPA VPA0873 3952 1-80,191-365 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002774948 e7arlE1 002988882 Q87PJ4_nD1 Q87PJ4 Q87PJ4_VIBPA VP1508 DUF3305 domain-containing protein 1508 17-134 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002644384 e6vgbA1 002988883 Q87RZ5_nD2 Q87RZ5 Q87RZ5_VIBPA VP0629 629 291-420 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 000224353 e2ctzA1 002988884 Q87RZ5_nD1 Q87RZ5 Q87RZ5_VIBPA VP0629 629 1-290 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002756517 e7kb0A1 002988885 Q87QV7_nD1 Q87QV7 Q87QV7_VIBPA VP1043 Zn_protease domain-containing protein 1042 26-80 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001560739 e5al7A3 002988886 Q87QV7_nD2 Q87QV7 Q87QV7_VIBPA VP1043 Zn_protease domain-containing protein 1042 106-240 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000017 e2pmaA1 002988887 Q87JX9_nD1 Q87JX9 Q87JX9_VIBPA VPA0119 Multidrug transporter 3198 1-285 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002988888 Q87GU2_nD1 Q87GU2 Y5223_VIBPA VPA1223 UPF0502 protein VPA1223 4302 1-210 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002708 e1yg2A1 002988889 Q87M54_nD1 Q87M54 Q87M54_VIBPA VP2404 2404 1-150 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001558845 e4tsdB1 002988890 Q87N31_nD1 Q87N31 Q87N31_VIBPA VP2044 DUF3575 domain-containing protein 2044 31-133 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002988891 Q87H92_nD1 Q87H92 Q87H92_VIBPA VPA1073 4152 21-429 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 000138879 e3a52A1 002988892 Q87T98_nD1 Q87T98 Q87T98_VIBPA VP0172 172 81-185 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 001389393 e4oetB3 002988893 Q87T98_nD2 Q87T98 Q87T98_VIBPA VP0172 172 31-80,186-315,541-595 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002810835 e7atrA3 002988894 Q87T98_nD3 Q87T98 Q87T98_VIBPA VP0172 172 316-540 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523537 e4onyB3 002988895 Q87GN0_nD1 Q87GN0 Q87GN0_VIBPA VPA1285 Orphan protein 4364 16-100 f a.7 545 545.1 545.1.2 alpha bundles Gametocyte protein Pfg27-related Gametocyte protein Pfg27-related Sporozoite protein UIS3 soluble domain 000345067 e2vwaD1 002988896 Q87LE3_nD1 Q87LE3 Q87LE3_VIBPA VP2669 Lipopolysaccharide export system ATP-binding protein LptB 2668 1-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002464328 e6mjpA1 002988897 Q87RU6_nD2 Q87RU6 Q87RU6_VIBPA VP0680 680 96-195 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001213243 e4gqnB4 002988898 Q87RU6_nD1 Q87RU6 Q87RU6_VIBPA VP0680 680 1-90 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000100 e1kzlA1 002988899 Q87NU0_nD1 Q87NU0 Q87NU0_VIBPA VP1778 1778 1-75 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001109390 e4i6uA1 002988900 Q87NU0_nD2 Q87NU0 Q87NU0_VIBPA VP1778 1778 76-185 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001179973 e1rc6A3 002988901 Q87Q13_nD2 Q87Q13 Q87Q13_VIBPA VP1337 1337 71-175 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 002668493 e6m6vD1 002988902 Q87Q13_nD1 Q87Q13 Q87Q13_VIBPA VP1337 1337 1-25 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002988903 Q87Q13_nD3 Q87Q13 Q87Q13_VIBPA VP1337 1337 26-70,176-425 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701855 e7cadB1 002988904 Q87SV8_nD3 Q87SV8 Q87SV8_VIBPA VP0314 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase 314 311-450 f a.17 7570 7570.1 7570.1.1 a/b three-layered sandwiches MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 000139604 e3mvnA1 002988905 Q87SV8_nD2 Q87SV8 Q87SV8_VIBPA VP0314 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase 314 91-310 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000347894 e3eagB2 002988906 Q87SV8_nD1 Q87SV8 Q87SV8_VIBPA VP0314 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase 314 1-90 f a.17 2003 2003.1 2003.1.8 a/b three-layered sandwiches Rossmann-like Rossmann-related MurCD/PglD N-terminal domain-like 000347893 e3eagB1 002988907 Q87J98_nD1 Q87J98 Q87J98_VIBPA VPA0355 3434 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001410173 e4hamA1 002988908 Q87J98_nD2 Q87J98 Q87J98_VIBPA VPA0355 3434 81-240 f a.11 814 814.1 814.1.1 a+b two layers Chorismate lyase Chorismate lyase Chorismate lyase 000377189 e3f8lB1 002988909 Q87QC9_nD2 Q87QC9 Q87QC9_VIBPA VP1220 1220 206-405 f a.19 139 139.4 139.4.1 few secondary structure elements Multiheme cytochromes Outer membrane cytochrome MtrF Outer membrane cytochrome MtrF 001285597 e4lmhD3 002988910 Q87QC9_nD1 Q87QC9 Q87QC9_VIBPA VP1220 1220 36-200 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001814316 e3ucpA3 002988911 Q87QC9_nD4 Q87QC9 Q87QC9_VIBPA VP1220 1220 571-750 f a.19 139 139.4 139.4.1 few secondary structure elements Multiheme cytochromes Outer membrane cytochrome MtrF Outer membrane cytochrome MtrF 001814314 e3ucpA1 002988912 Q87QC9_nD3 Q87QC9 Q87QC9_VIBPA VP1220 1220 406-570 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001497987 e4lm8A4 002988913 Q87N55_nD2 Q87N55 Q87N55_VIBPA VP2020 PMT_2 domain-containing protein 2020 456-555 f a.17 3110 3110.1 3110.1.1 a/b three-layered sandwiches STT3/PglB/AglB core domain STT3/PglB/AglB core domain STT3/PglB/AglB core domain 001759955 e5ezmA2 002988914 Q87N55_nD1 Q87N55 Q87N55_VIBPA VP2020 PMT_2 domain-containing protein 2020 1-455 f a.7 3352 3352.1 3352.1.1 alpha bundles STT3/PglB/AglB transmembrane domain STT3/PglB/AglB transmembrane domain STT3/PglB/AglB transmembrane domain 001759954 e5ezmA1 002988915 Q87JL2_nD1 Q87JL2 Q87JL2_VIBPA VPA0237 N-acetyltransferase domain-containing protein 3316 1-135 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011084 e2jdcA1 002988916 Q87RQ8_nD3 Q87RQ8 Q87RQ8_VIBPA VP0719 serine-type D-Ala-D-Ala carboxypeptidase 719 286-385 f a.3 51 51.1 51.1.1 beta sandwiches Penicillin-binding protein associated domain Penicillin-binding protein associated domain Penicillin-binding protein associated domain 001101913 e4k91A1 002988917 Q87RQ8_nD1 Q87RQ8 Q87RQ8_VIBPA VP0719 serine-type D-Ala-D-Ala carboxypeptidase 719 61-180 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 001918518 e5tr7A1 002988918 Q87RQ8_nD2 Q87RQ8 Q87RQ8_VIBPA VP0719 serine-type D-Ala-D-Ala carboxypeptidase 719 26-60,181-285 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 000137548 e3a3jA3 002988919 Q87K10_nD1 Q87K10 Q87K10_VIBPA VPA0088 3167 6-385 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 001832897 e3c5mB1 002988920 Q87JF1_nD2 Q87JF1 Q87JF1_VIBPA VPA0302 VOC domain-containing protein 3381 71-129 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000168811 e3e5dA1 002988921 Q87JF1_nD1 Q87JF1 Q87JF1_VIBPA VPA0302 VOC domain-containing protein 3381 1-70 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001214225 e3e5dA3 002988922 Q87GU9_nD2 Q87GU9 Q87GU9_VIBPA VPA1216 Pilus assembly protein PilZ 4295 116-215 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 002137683 e5vx6B2 002988923 Q87GU9_nD1 Q87GU9 Q87GU9_VIBPA VPA1216 Pilus assembly protein PilZ 4295 6-115 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000388474 e3kygB2 002988924 Q87Q48_nD1 Q87Q48 Q87Q48_VIBPA VP1302 1302 1-455 f a.10 5052 5052.1 5052.1.1 alpha complex topology Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein 001887687 e5dwyB1 002988925 Q87HW2_nD1 Q87HW2 Q87HW2_VIBPA VPA0844 ACP phosphodiesterase 3923 1-195 f a.6 524 524.2 524.2.1 alpha arrays Ypt/Rab-GAP domain of gyp1p-like Sama2622-like Sama2622-like 000003533 e2pv4A1 002988926 Q87QZ2_nD1 Q87QZ2 Q87QZ2_VIBPA VP1006 Probable membrane transporter protein 1006 6-250 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002988927 Q87IL5_nD6 Q87IL5 Q87IL5_VIBPA VPA0591 DUF6701 domain-containing protein 3670 861-985 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002453077 e6dxuC4 002988928 Q87IL5_nD1 Q87IL5 Q87IL5_VIBPA VPA0591 DUF6701 domain-containing protein 3670 21-315 f a.4 207 207.2 207.2.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like 001395410 e3szeA2 002988929 Q87IL5_nD5 Q87IL5 Q87IL5_VIBPA VPA0591 DUF6701 domain-containing protein 3670 706-735,756-860 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002457092 e6immT2 002988930 Q87IL5_nD2 Q87IL5 Q87IL5_VIBPA VPA0591 DUF6701 domain-containing protein 3670 316-430 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001855904 e4uj7A2 002988931 Q87IL5_nD4 Q87IL5 Q87IL5_VIBPA VPA0591 DUF6701 domain-containing protein 3670 551-705,736-755 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002066819 e5n40A2 002988932 Q87IL5_nD3 Q87IL5 Q87IL5_VIBPA VPA0591 DUF6701 domain-containing protein 3670 431-550 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001855904 e4uj7A2 002988933 Q87N86_nD4 Q87N86 Q87N86_VIBPA VP1989 1989 26-40,231-350 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001313622 e4tkoB1 002988934 Q87N86_nD3 Q87N86 Q87N86_VIBPA VP1989 1989 81-195 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001647796 e3fppB3 002988935 Q87N86_nD2 Q87N86 Q87N86_VIBPA VP1989 1989 41-80,196-230 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002988936 Q87N86_nD1 Q87N86 Q87N86_VIBPA VP1989 1989 1-25 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002988937 Q87NA2_nD1 Q87NA2 Q87NA2_VIBPA VP1973 Type II secretion system (T2SS) pilotin (S protein) 1973 16-125 f a.11 3148 3148.1 3148.1.1 a+b two layers putative secreted protein PA3611 putative secreted protein PA3611 putative secreted protein PA3611 000221374 e4ftfA1 002988938 Q87JA2_nD1 Q87JA2 Q87JA2_VIBPA VPA0351 3430 6-255 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701855 e7cadB1 002988939 Q87GD2_nD1 Q87GD2 Q87GD2_VIBPA VPA1385 4464 21-80 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002512978 e6r2gA1 002988940 Q87MA6_nD2 Q87MA6 NQRA_VIBPA VP2351 nqrA Na(+)-translocating NADH-quinone reductase subunit A 2351 101-260 f a.17 4335 4335.1 4335.1.1 a/b three-layered sandwiches Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like 001414913 e4p6vA2 002988941 Q87MA6_nD1 Q87MA6 NQRA_VIBPA VP2351 nqrA Na(+)-translocating NADH-quinone reductase subunit A 2351 6-100 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001414912 e4p6vA1 002988942 Q87MA6_nD3 Q87MA6 NQRA_VIBPA VP2351 nqrA Na(+)-translocating NADH-quinone reductase subunit A 2351 261-325 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001414914 e4p6vA3 002988943 Q87MA6_nD4 Q87MA6 NQRA_VIBPA VP2351 nqrA Na(+)-translocating NADH-quinone reductase subunit A 2351 366-445 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 001414915 e4p6vA4 002988944 Q87MJ1_nD1 Q87MJ1 Q87MJ1_VIBPA VP2264 DUF2956 domain-containing protein 2264 11-80 f a.6 4085 4085.1 4085.1.1 alpha arrays RbcX-like RbcX-like RbcX-like 000142193 e3q20A1 002988945 Q87H69_nD1 Q87H69 Q87H69_VIBPA VPA1096 DUF4136 domain-containing protein 4175 21-170 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 001068683 e4l8nA1 002988946 Q87J51_nD1 Q87J51 Q87J51_VIBPA VPA0402 DUF465 domain-containing protein 3481 1-79 f a.7 632 632.7 632.7.1 alpha bundles immunoglobulin/albumin-binding domain-like Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 002664097 e6zhiB2 002988947 Q87KN7_nD1 Q87KN7 Q87KN7_VIBPA VP2940 YijD family membrane protein 2939 6-110 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002673050 e6wk9B1 002988948 Q87IG7_nD1 Q87IG7 Q87IG7_VIBPA VPA0639 3718 6-115,136-215 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002988949 Q87IS0_nD3 Q87IS0 Q87IS0_VIBPA VPA0536 Cytochrome c oxidase subunit 2 3615 276-380 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000235712 e3ziyA3 002988950 Q87IS0_nD2 Q87IS0 Q87IS0_VIBPA VPA0536 Cytochrome c oxidase subunit 2 3615 116-270 f a.3 3156 3156.1 3156.1.1 beta sandwiches Cupredoxin-like Cupredoxin-related Cupredoxin-related 000411720 e3omnD2 002988951 Q87IS0_nD1 Q87IS0 Q87IS0_VIBPA VPA0536 Cytochrome c oxidase subunit 2 3615 21-115 f a.21 5040 5040.1 5040.1.1 extended segments Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region 002825343 e7q21g2 002988952 Q87SD2_nD1 Q87SD2 RRAAH_VIBPA VP0492 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 492 1-160 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000357552 e3c8oB1 002988953 Q87FE4_nD4 Q87FE4 Q87FE4_VIBPA VPA1735 Diguanylate cyclase 4814 406-635 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002541753 e6pwjA1 002988954 Q87FE4_nD3 Q87FE4 Q87FE4_VIBPA VPA1735 Diguanylate cyclase 4814 231-405 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002542929 e6pwjB2 002988955 Q87FE4_nD2 Q87FE4 Q87FE4_VIBPA VPA1735 Diguanylate cyclase 4814 166-230 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002988956 Q87FE4_nD1 Q87FE4 Q87FE4_VIBPA VPA1735 Diguanylate cyclase 4814 6-160 f a.12 223 223.8 223.8.1 a+b three layers Profilin-like LapD periplasmic domain LapD periplasmic domain 001323183 e4u65A1 002988957 Q87G13_nD5 Q87G13 Q87G13_VIBPA VPA1504 4583 711-795 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001345450 e3rfzB4 002988958 Q87G13_nD2 Q87G13 Q87G13_VIBPA VPA1504 4583 246-325 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001307870 e3fcgA1 002988959 Q87G13_nD1 Q87G13 Q87G13_VIBPA VPA1504 4583 41-125 f a.1 4212 4212.1 4212.1.1 beta barrels FimD N-terminal domain-like FimD N-terminal domain-like FimD N-terminal domain-like 002393150 e6cd2C5 002988960 Q87G13_nD4 Q87G13 Q87G13_VIBPA VPA1504 4583 631-710 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002780138 e7lhhC4 002988961 Q87G13_nD3 Q87G13 Q87G13_VIBPA VPA1504 4583 131-245,326-630 f a.1 5084 5084.8 5084.8.1 beta barrels Outer membrane meander beta-barrels Usher PapC translocation pore Usher PapC translocation pore 001312416 e4j3oD3 002988962 Q87LP2_nD1 Q87LP2 PDXJ_VIBPA VP2569 pdxJ Pyridoxine 5'-phosphate synthase 2568 1-240 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000093933 e1ixpD1 002988963 Q87S84_nD1 Q87S84 Q87S84_VIBPA VP0540 540 6-480 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002444945 e6csfM1 002988964 Q87H58_nD1 Q87H58 Q87H58_VIBPA VPA1107 Globin 4186 1-140 f a.6 106 106.1 106.1.1 alpha arrays Globin-like Globin-like Globin-like 000003296 e1tu9A1 002988965 Q87KS3_nD2 Q87KS3 Q87KS3_VIBPA VP2903 2902 251-445 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001231895 e2z4sA3 002988966 Q87KS3_nD1 Q87KS3 Q87KS3_VIBPA VP2903 2902 6-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001002413 e1um8A3 002988967 Q87LY6_nD7 Q87LY6 Q87LY6_VIBPA VP2472 2472 661-705,796-850 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001396259 e3w9iF3 002988968 Q87LY6_nD6 Q87LY6 Q87LY6_VIBPA VP2472 2472 706-795 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002792356 e7b8sC4 002988969 Q87LY6_nD2 Q87LY6 Q87LY6_VIBPA VP2472 2472 181-265 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002988970 Q87LY6_nD5 Q87LY6 Q87LY6_VIBPA VP2472 2472 561-660 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002099409 e5lq3B2 002988971 Q87LY6_nD8 Q87LY6 Q87LY6_VIBPA VP2472 2472 516-560,851-1040 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002988972 Q87LY6_nD3 Q87LY6 Q87LY6_VIBPA VP2472 2472 136-180,266-325 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834886 e4dntA6 002988973 Q87LY6_nD4 Q87LY6 Q87LY6_VIBPA VP2472 2472 1-40,326-510 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 001834884 e4dntA4 002988974 Q87LY6_nD1 Q87LY6 Q87LY6_VIBPA VP2472 2472 41-130 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816520 e7cz9B7 002988975 Q87GC3_nD2 Q87GC3 Q87GC3_VIBPA VPA1394 4473 6-15,196-305 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001167088 e3te6A3 002988976 Q87GC3_nD1 Q87GC3 Q87GC3_VIBPA VPA1394 4473 16-195,306-315 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001304894 e2q6tC2 002988977 Q87PG1_nD3 Q87PG1 Q87PG1_VIBPA VP1541 Cbb3-type cytochrome c oxidase subunit 1541 206-295 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000396878 e3mk7M2 002988978 Q87PG1_nD1 Q87PG1 Q87PG1_VIBPA VP1541 Cbb3-type cytochrome c oxidase subunit 1541 1-85 f a.21 5040 5040.1 5040.1.1 extended segments Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region 000396879 e3mk7M3 002988979 Q87PG1_nD2 Q87PG1 Q87PG1_VIBPA VP1541 Cbb3-type cytochrome c oxidase subunit 1541 91-205,296-320 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 002717138 e6xkwp3 002988980 Q87FQ4_nD2 Q87FQ4 Q87FQ4_VIBPA VPA1624 DUF368 domain-containing protein 4703 91-140,216-245,266-300 f a.7 1188 1188.1 1188.1.1 alpha bundles ZIP zinc transporter ZIP zinc transporter ZIP zinc transporter 002323937 e5tsaA1 002988981 Q87FQ4_nD1 Q87FQ4 Q87FQ4_VIBPA VPA1624 DUF368 domain-containing protein 4703 1-90,146-215 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002988982 Q87PS6_nD1 Q87PS6 Q87PS6_VIBPA VP1425 1425 1-195 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 000142387 e3owoA2 002988983 Q87PS6_nD2 Q87PS6 Q87PS6_VIBPA VP1425 1425 196-395 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 000352535 e3bfjT1 002988984 Q87R25_nD1 Q87R25 Q87R25_VIBPA VP0973 973 6-180 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011090 e2fckA1 002988985 Q87N23_nD2 Q87N23 Q87N23_VIBPA VP2052 3-oxoacyl-[acyl-carrier-protein] synthase 2 2052 256-415 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000113115 e1tqyE2 002988986 Q87N23_nD1 Q87N23 Q87N23_VIBPA VP2052 3-oxoacyl-[acyl-carrier-protein] synthase 2 2052 6-255 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002120488 e4cw4A1 002988987 Q87L46_nD1 Q87L46 Q87L46_VIBPA VP2769 2768 1-55 f a.6 101 101.32 101.32.1 alpha arrays HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin 000185707 e4e6kG1 002988988 Q87HT5_nD1 Q87HT5 Q87HT5_VIBPA VPA0872 3950 21-200 f a.17 2007 2007.5 2007.5.1 a/b three-layered sandwiches Flavodoxin-like SGNH hydrolase SGNH hydrolase 000135438 e3hp4A1 002988989 Q87TP5_nD1 Q87TP5 Q87TP5_VIBPA VP0024 24 11-85 f a.7 1008 1008.1 1008.1.1 alpha bundles BRCC36 C-terminal helical domain BRCC36 C-terminal helical domain BRCC36 C-terminal helical domain 001693381 e5cw4C1 002988990 Q87KD8_nD1 Q87KD8 SMG_VIBPA VP3039 smg Protein Smg homolog 3038 1-55 f a.6 101 101.35 101.35.1 alpha arrays HTH DNA repair regulatory protein RecX DNA repair regulatory protein RecX 001068636 e3e3vA1 002988991 Q87KD8_nD2 Q87KD8 SMG_VIBPA VP3039 smg Protein Smg homolog 3038 76-150 f a.6 103 103.7 103.7.1 alpha arrays RuvA-C Hypothetical protein MTH1615 Hypothetical protein MTH1615 000135253 e2k6bA1 002988992 Q87QI5_nD1 Q87QI5 Q87QI5_VIBPA VP1164 Putative, 10TM heavy-metal exporter 1164 26-168,197-255,281-404 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001545111 e4r1iA1 002988993 Q87IH6_nD1 Q87IH6 Q87IH6_VIBPA VPA0630 Cytochrome bo(3) ubiquinol oxidase subunit 4 3709 11-95 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 001252018 e3udcG6 002988994 Q87IT8_nD3 Q87IT8 Q87IT8_VIBPA VPA0518 3597 336-600 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002988995 Q87IT8_nD2 Q87IT8 Q87IT8_VIBPA VPA0518 3597 171-335 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 000412326 e3pjxA1 002988996 Q87IT8_nD1 Q87IT8 Q87IT8_VIBPA VPA0518 3597 1-170 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001271738 e1ykdA10 002988997 Q87I07_nD1 Q87I07 Q87I07_VIBPA VPA0799 HNH domain-containing protein 3878 13-135 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 002485694 e6ghcB2 002988998 Q87I07_nD2 Q87I07 Q87I07_VIBPA VPA0799 HNH domain-containing protein 3878 136-220 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 000153722 e4hojA2 002988999 Q87LW2_nD3 Q87LW2 Q87LW2_VIBPA VP2496 PNPLA domain-containing protein 2496 431-770 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001788077 e5d0oA5 002989000 Q87LW2_nD1 Q87LW2 Q87LW2_VIBPA VP2496 PNPLA domain-containing protein 2496 41-335 f a.17 2007 2007.1 2007.1.19 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like 000109856 e1oxwC1 002989001 Q87LW2_nD2 Q87LW2 Q87LW2_VIBPA VP2496 PNPLA domain-containing protein 2496 351-425 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001261968 e2qdfA11 002989002 Q87P24_nD1 Q87P24 Q87P24_VIBPA VP1694 1694 1-80 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 000152588 e4b6xA1 002989003 Q87PA2_nD1 Q87PA2 Q87PA2_VIBPA VP1615 DUF4442 domain-containing protein 1615 1-160 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000138563 e3lmbA1 002989004 Q87Q34_nD1 Q87Q34 Q87Q34_VIBPA VP1316 1316 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002989005 Q87Q34_nD2 Q87Q34 Q87Q34_VIBPA VP1316 1316 81-289 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002989006 Q87G02_nD1 Q87G02 Q87G02_VIBPA VPA1518 Spondin domain-containing protein 4597 26-169,191-230 f a.3 11 11.2 11.2.1 beta sandwiches Immunoglobulin-like beta-sandwich C2 domain C2 domain 001839925 e3q13A1 002989007 Q87KQ5_nD9 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 1151-1215 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 002714997 e6wmpD3 002989008 Q87KQ5_nD7 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 946-1020 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 002630879 e6n4cD2 002989009 Q87KQ5_nD2 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 376-415 f a.6 4951 4951.1 4951.1.1 alpha arrays inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit 002512634 e5zx3D3 002989010 Q87KQ5_nD5 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 636-790 f a.14 4958 4958.1 4958.1.1 a+b complex topology second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit 001504010 e4yfkD6 002989011 Q87KQ5_nD8 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 1021-1130 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 002630880 e6n4cD3 002989012 Q87KQ5_nD6 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 811-895 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 002714999 e6wmpD5 002989013 Q87KQ5_nD10 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 896-940,1136-1150,1216-1370 f a.14 4954 4954.1 4954.1.1 a+b complex topology central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit 001344688 e4c2mP3 002989014 Q87KQ5_nD3 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 346-375,416-500 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002630878 e6n4cD1 002989015 Q87KQ5_nD4 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 501-635 f a.14 4959 4959.1 4959.1.1 a+b complex topology first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit 002714996 e6wmpD2 002989016 Q87KQ5_nD1 Q87KQ5 RPOC_VIBPA VP2921 rpoC DNA-directed RNA polymerase subunit beta' 2920 6-345 f a.14 4246 4246.1 4246.1.1 a+b complex topology N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit 002512632 e5zx3D1 002989017 Q87FD2_nD3 Q87FD2 Q87FD2_VIBPA VPA1747 4826 161-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002989018 Q87FD2_nD1 Q87FD2 Q87FD2_VIBPA VPA1747 4826 6-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002989019 Q87FD2_nD2 Q87FD2 Q87FD2_VIBPA VPA1747 4826 81-160,271-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002989020 Q87RM7_nD1 Q87RM7 Q87RM7_VIBPA VP0751 Smr domain-containing protein 751 53-175 f a.11 328 328.7 328.7.1 a+b two layers IF3-like Smr domain Smr domain 001394869 e3qd7X1 002989021 Q87NV7_nD1 Q87NV7 Q87NV7_VIBPA VP1761 1761 11-150 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002145196 e4pl0B2 002989022 Q87G96_nD1 Q87G96 Q87G96_VIBPA VPA1421 4500 1-95 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001558831 e4tn5A1 002989023 Q87RC2_nD1 Q87RC2 Y875_VIBPA VP0875 YcgL domain-containing protein VP0875 875 1-85 f a.11 4943 4943.1 4943.1.1 a+b two layers YcgL/NE1680-like YcgL/NE1680-like YcgL/NE1680-like 000005468 e2h7aA1 002989024 Q87LI1_nD3 Q87LI1 Q87LI1_VIBPA VP2631 2630 341-410 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002171662 e5ycqA1 002989025 Q87LI1_nD1 Q87LI1 Q87LI1_VIBPA VP2631 2630 1-60 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 000004983 e1g8lA2 002989026 Q87LI1_nD2 Q87LI1 Q87LI1_VIBPA VP2631 2630 81-360 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000146383 e3tm8A1 002989027 Q87QY5_nD1 Q87QY5 CLPS_VIBPA VP1013 clpS ATP-dependent Clp protease adapter protein ClpS 1013 6-105 f a.11 308 308.1 308.1.1 a+b two layers ClpS-like ClpS-related ClpS-related 000435725 e3o2bC1 002989028 Q87TF1_nD4 Q87TF1 Q87TF1_VIBPA VP0118 ntrC DNA-binding transcriptional regulator NtrC 118 396-465 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002989029 Q87TF1_nD3 Q87TF1 Q87TF1_VIBPA VP0118 ntrC DNA-binding transcriptional regulator NtrC 118 311-390 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001822146 e5ep1A1 002989030 Q87TF1_nD1 Q87TF1 Q87TF1_VIBPA VP0118 ntrC DNA-binding transcriptional regulator NtrC 118 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002072962 e5m7pB4 002989031 Q87TF1_nD2 Q87TF1 Q87TF1_VIBPA VP0118 ntrC DNA-binding transcriptional regulator NtrC 118 136-310 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002598028 e6lufB2 002989032 Q87TD8_nD3 Q87TD8 Q87TD8_VIBPA VP0132 132 211-305 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 002564164 e6vbbA2 002989033 Q87TD8_nD1 Q87TD8 Q87TD8_VIBPA VP0132 132 26-50 f a.4 4154 4154.1 4154.1.1 beta duplicates or obligate multimers E2F-DP heterodimerization region E2F-DP heterodimerization region E2F-DP heterodimerization region 000002284 e2azeB1 002989034 Q87TD8_nD2 Q87TD8 Q87TD8_VIBPA VP0132 132 111-180 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 002553478 e6hcgg1 002989035 Q87FF0_nD1 Q87FF0 Q87FF0_VIBPA VPA1729 4808 21-135 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002552681 e6kjuB1 002989036 Q87FF0_nD2 Q87FF0 Q87FF0_VIBPA VPA1729 4808 136-240 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 002753461 e7dwmA1 002989037 Q87L31_nD2 Q87L31 Q87L31_VIBPA VP2785 kefB Glutathione-regulated potassium-efflux system protein KefB 2784 391-590 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001145865 e3l9wB1 002989038 Q87L31_nD1 Q87L31 Q87L31_VIBPA VP2785 kefB Glutathione-regulated potassium-efflux system protein KefB 2784 6-380 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001422103 e4czbB1 002989039 Q87N65_nD3 Q87N65 Q87N65_VIBPA VP2010 histidine kinase 2010 326-415 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989040 Q87N65_nD4 Q87N65 Q87N65_VIBPA VP2010 histidine kinase 2010 416-575 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002989041 Q87N65_nD1 Q87N65 Q87N65_VIBPA VP2010 histidine kinase 2010 106-220 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989042 Q87N65_nD2 Q87N65 Q87N65_VIBPA VP2010 histidine kinase 2010 11-105,211-325 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989043 Q87MV2_nD1 Q87MV2 Y2129_VIBPA VP2129 UPF0352 protein VP2129 2129 6-70 f a.8 4144 4144.1 4144.1.1 alpha duplicates or obligate multimers YejL-like YejL-like YejL-like 000004422 e2otaA1 002989044 Q87HM8_nD1 Q87HM8 Q87HM8_VIBPA VPA0935 Zn_protease domain-containing protein 4014 86-215 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000017 e2pmaA1 002989045 Q87JU0_nD1 Q87JU0 Q87JU0_VIBPA VPA0158 DUF2271 domain-containing protein 3237 31-179 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001780764 e3osvB1 002989046 Q87P10_nD2 Q87P10 Q87P10_VIBPA VP1708 6-phosphogluconate dehydrogenase, decarboxylating 1708 181-470 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000165016 e2p4qA1 002989047 Q87P10_nD1 Q87P10 Q87P10_VIBPA VP1708 6-phosphogluconate dehydrogenase, decarboxylating 1708 1-180 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000098183 e1pgoA2 002989048 Q79YZ4_nD1 Q79YZ4 Q79YZ4_VIBPA VP0689 689 6-240 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002989049 Q87JF9_nD2 Q87JF9 Q87JF9_VIBPA VPA0294 IS1 family transposase 3373 71-110 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001933336 e2nb9A1 002989050 Q87JF9_nD1 Q87JF9 Q87JF9_VIBPA VPA0294 IS1 family transposase 3373 11-55 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000008041 e2fiyA1 002989051 Q87JF9_nD3 Q87JF9 Q87JF9_VIBPA VPA0294 IS1 family transposase 3373 56-70,111-470 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000215919 e4dm0A1 002989052 Q87FL8_nD1 Q87FL8 Q87FL8_VIBPA VPA1661 4740 13-180 f a.11 3264 3264.1 3264.1.1 a+b two layers N-terminal domain of alcaligin biosynthesis protein C N-terminal domain of alcaligin biosynthesis protein C N-terminal domain of alcaligin biosynthesis protein C 001269288 e2x3jA4 002989053 Q87FL8_nD2 Q87FL8 Q87FL8_VIBPA VPA1661 4740 161-600 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001269287 e2x3jA3 002989054 Q87MG7_nD1 Q87MG7 GMHA_VIBPA VP2288 gmhA Phosphoheptose isomerase 2288 6-190 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 002140307 e5lu7D1 002989055 Q87I25_nD1 Q87I25 Q87I25_VIBPA VPA0781 DUF2999 family protein 3860 1-80 f a.6 101 101.3 101.3.1 alpha arrays HTH XPC-binding domain XPC-binding domain 002808778 e6xqjA2 002989056 Q79YW4_nD1 Q79YW4 Q79YW4_VIBPA VP2243 Flagellar protein FliL 2243 61-165 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000996940 e3bk6B1 002989057 Q87Q20_nD2 Q87Q20 Y1330_VIBPA VP1330 Uncharacterized protein VP1330 1330 146-310 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 002453168 e6j7cA2 002989058 Q87Q20_nD1 Q87Q20 Y1330_VIBPA VP1330 Uncharacterized protein VP1330 1330 6-145 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 002410306 e6hjgB2 002989059 Q87KW3_nD1 Q87KW3 Q87KW3_VIBPA VP2862 2861 6-100 f a.7 632 632.19 632.19.1 alpha bundles immunoglobulin/albumin-binding domain-like Choline binding protein A Choline binding protein A 001180303 e4k12B1 002989060 Q87LM6_nD1 Q87LM6 Q87LM6_VIBPA VP2585 DUF1107 domain-containing protein 2584 1-65 f a.11 6041 6041.1 6041.1.1 a+b two layers DUF1107-like DUF1107-like DUF1107-like 000184678 e2jroA1 002989061 Q87LF4_nD2 Q87LF4 MURA_VIBPA VP2658 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2657 1-20,231-418 f a.11 328 328.6 328.6.1 a+b two layers IF3-like EPT/RTPC-like EPT/RTPC-like 001934020 e5u4hB1 002989062 Q87LF4_nD1 Q87LF4 MURA_VIBPA VP2658 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2657 21-230 f a.11 328 328.6 328.6.1 a+b two layers IF3-like EPT/RTPC-like EPT/RTPC-like 001934021 e5u4hB2 002989063 Q87KD5_nD1 Q87KD5 DEF1_VIBPA VP3042 def1 Peptide deformylase 1 3041 1-170 f a.14 289 289.1 289.1.1 a+b complex topology Peptide deformylase Peptide deformylase Peptide deformylase 002580121 e6jevA1 002989064 Q87I16_nD2 Q87I16 Q87I16_VIBPA VPA0790 3869 166-330 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001170462 e4exrA3 002989065 Q87I16_nD1 Q87I16 Q87I16_VIBPA VPA0790 3869 1-165 f a.7 7064 7064.1 7064.1.1 alpha bundles Transmembrane domain of VIT1 Transmembrane domain of VIT1 Transmembrane domain of VIT1 002502907 e6iu4A1 002989066 Q87GW9_nD5 Q87GW9 Q87GW9_VIBPA VPA1196 Sensor protein 4275 376-435 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002989067 Q87GW9_nD2 Q87GW9 Q87GW9_VIBPA VPA1196 Sensor protein 4275 11-35,146-180 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002389373 e5xjmA2 002989068 Q87GW9_nD6 Q87GW9 Q87GW9_VIBPA VPA1196 Sensor protein 4275 436-575 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002710374 e6ph4B1 002989069 Q87GW9_nD1 Q87GW9 Q87GW9_VIBPA VPA1196 Sensor protein 4275 41-145 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002080122 e5ijiA1 002989070 Q87GW9_nD4 Q87GW9 Q87GW9_VIBPA VPA1196 Sensor protein 4275 231-375 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001392669 e4i5sB2 002989071 Q87GW9_nD3 Q87GW9 Q87GW9_VIBPA VPA1196 Sensor protein 4275 181-230 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002989072 Q87J56_nD3 Q87J56 Q87J56_VIBPA VPA0397 DUF3298 domain-containing protein 3476 201-330 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001806461 e2ra1A4 002989073 Q87J56_nD1 Q87J56 Q87J56_VIBPA VPA0397 DUF3298 domain-containing protein 3476 31-55,91-175 f a.7 604 604.12 604.12.1 alpha bundles Spectrin repeat-like MIT domain MIT domain 001291923 e4p1nB1 002989074 Q87J56_nD2 Q87J56 Q87J56_VIBPA VPA0397 DUF3298 domain-containing protein 3476 176-200 f a.7 3758 3758.1 3758.1.1 alpha bundles Bacterial hemolysins-like Bacterial hemolysins Bacterial hemolysins 002725738 e7a27GGG1 002989075 Q87RC3_nD1 Q87RC3 MINC_VIBPA VP0874 minC Probable septum site-determining protein MinC 874 6-100 f a.17 2495 2495.1 2495.1.1 a/b three-layered sandwiches Cell-division inhibitor MinC, N-terminal domain Cell-division inhibitor MinC, N-terminal domain Cell-division inhibitor MinC, N-terminal domain 000134199 e3ghfA1 002989076 Q87RC3_nD2 Q87RC3 MINC_VIBPA VP0874 minC Probable septum site-determining protein MinC 874 111-220 f a.4 207 207.5 207.5.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Cell-division inhibitor MinC-C Cell-division inhibitor MinC-C 001489336 e4v02C1 002989077 Q87R34_nD1 Q87R34 Q87R34_VIBPA VP0964 964 6-110 f a.12 312 312.1 312.1.1 a+b three layers HIT-like HIT-related HIT-related 000403052 e3n1sJ1 002989078 Q87JD8_nD3 Q87JD8 Q87JD8_VIBPA VPA0315 3394 161-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002989079 Q87JD8_nD2 Q87JD8 Q87JD8_VIBPA VPA0315 3394 91-160,261-294 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002989080 Q87JD8_nD1 Q87JD8 Q87JD8_VIBPA VPA0315 3394 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002989081 Q87G12_nD1 Q87G12 Q87G12_VIBPA VPA1506 4585 41-175 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 000139607 e3jwnG1 002989082 Q87HP5_nD3 Q87HP5 Q87HP5_VIBPA VPA0918 DUF2861 family protein 3997 191-290 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000311175 e2g2nD1 002989083 Q87HP5_nD1 Q87HP5 Q87HP5_VIBPA VPA0918 DUF2861 family protein 3997 26-80 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000169903 e2kclA1 002989084 Q87HP5_nD2 Q87HP5 Q87HP5_VIBPA VPA0918 DUF2861 family protein 3997 86-190 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002731314 e7l15A2 002989085 Q87SD3_nD1 Q87SD3 Q87SD3_VIBPA VP0491 DUF3293 domain-containing protein 491 11-135 f a.11 304 304.113 304.113.1 a+b two layers Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain 002797934 e7mfmG5 002989086 Q87SY1_nD2 Q87SY1 Q87SY1_VIBPA VP0291 uroporphyrinogen-III C-methyltransferase 291 166-290 f a.11 1137 1137.1 1137.1.1 a+b two layers Tetrapyrrole methylase C-terminal domain-like Tetrapyrrole methylase C-terminal domain Tetrapyrrole methylase C-terminal domain 001937351 e1pjtB2 002989087 Q87SY1_nD1 Q87SY1 Q87SY1_VIBPA VP0291 uroporphyrinogen-III C-methyltransferase 291 46-165 f a.17 7550 7550.1 7550.1.1 a/b three-layered sandwiches Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain 001937456 e1s4dE1 002989088 Q79YW6_nD1 Q79YW6 Q79YW6_VIBPA VP2241 Flagellar motor switch protein FliN 2241 51-135 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 000000082 e1o6aA1 002989089 Q87JF8_nD2 Q87JF8 Q87JF8_VIBPA VPA0295 Bifunctional metallophosphatase/5'-nucleotidase 3374 331-515 f a.14 805 805.1 805.1.1 a+b complex topology 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 000007582 e2z1aA1 002989090 Q87JF8_nD1 Q87JF8 Q87JF8_VIBPA VPA0295 Bifunctional metallophosphatase/5'-nucleotidase 3374 23-330 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 001211215 e3iveA3 002989091 Q87SE8_nD1 Q87SE8 Q87SE8_VIBPA VP0476 Trimeric intracellular cation channel family protein 476 6-205 f a.10 1111 1111.1 1111.1.1 alpha complex topology Trimeric intracellular cation (TRIC) channel Trimeric intracellular cation (TRIC) channel Trimeric intracellular cation (TRIC) channel 002099979 e5wufA1 002989092 Q87K28_nD1 Q87K28 Q87K28_VIBPA VPA0070 S-formylglutathione hydrolase 3149 6-279 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000387258 e3ls2B1 002989093 Q87H32_nD3 Q87H32 Q87H32_VIBPA VPA1133 4212 176-280 f a.11 304 304.39 304.39.1 a+b two layers Alpha-beta plaits Mechanosensitive channel protein MscS (YggB), C-terminal domain Mechanosensitive channel protein MscS (YggB), C-terminal domain 002832653 e7dluA1 002989094 Q87H32_nD2 Q87H32 Q87H32_VIBPA VPA1133 4212 111-175 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001172561 e4hw9G7 002989095 Q87H32_nD1 Q87H32 Q87H32_VIBPA VPA1133 4212 1-105 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002832654 e7dluA2 002989096 Q87S22_nD1 Q87S22 Q87S22_VIBPA VP0602 Fe-S assembly protein IscX 602 1-64 f a.6 101 101.22 101.22.1 alpha arrays HTH IscX-like IscX-like 000311021 e2bztA1 002989097 Q87M09_nD1 Q87M09 Q87M09_VIBPA VP2449 Multidrug export protein MepA 2449 6-220 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002808851 e6z70A2 002989098 Q87M09_nD2 Q87M09 Q87M09_VIBPA VP2449 Multidrug export protein MepA 2449 221-440 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002989099 Q87HD7_nD1 Q87HD7 Q87HD7_VIBPA VPA1028 4107 6-150 f a.6 148 148.1 148.1.2 alpha arrays Histone-like Histone-related double Clp-N 001405080 e4uqwA1 002989100 Q87HD7_nD2 Q87HD7 Q87HD7_VIBPA VPA1028 4107 161-350 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009748 e1jbkA1 002989101 Q87HD7_nD5 Q87HD7 Q87HD7_VIBPA VPA1028 4107 761-855 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002570854 e6vfxC1 002989102 Q87HD7_nD3 Q87HD7 Q87HD7_VIBPA VPA1028 4107 351-545 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002399789 e6e1033 002989103 Q87HD7_nD4 Q87HD7 Q87HD7_VIBPA VPA1028 4107 546-760 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001117526 e1g41A2 002989104 Q87IJ3_nD1 Q87IJ3 Q87IJ3_VIBPA VPA0613 3692 6-290 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002989105 Q87NC6_nD3 Q87NC6 Q87NC6_VIBPA VP1942 1942 481-850 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001152766 e2qmaA2 002989106 Q87NC6_nD4 Q87NC6 Q87NC6_VIBPA VP1942 1942 851-958 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002491494 e6ebnA2 002989107 Q87NC6_nD1 Q87NC6 Q87NC6_VIBPA VP1942 1942 6-360 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001390437 e4atqF1 002989108 Q87NC6_nD2 Q87NC6 Q87NC6_VIBPA VP1942 1942 361-470 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 000005569 e1c4kA2 002989109 Q87SE1_nD1 Q87SE1 Q87SE1_VIBPA VP0483 483 6-140 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 002538592 e6s6uH1 002989110 Q87SE1_nD2 Q87SE1 Q87SE1_VIBPA VP0483 483 141-240,411-480 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 001872648 e3ad7A2 002989111 Q87SE1_nD3 Q87SE1 Q87SE1_VIBPA VP0483 483 241-410 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002651722 e6tjrB1 002989112 Q87QI0_nD1 Q87QI0 Q87QI0_VIBPA VP1169 1169 21-290 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002989113 Q87LQ2_nD1 Q87LQ2 ISPD_VIBPA VP2559 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2559 6-234 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 000010289 e1i52A1 002989114 Q87PM5_nD1 Q87PM5 Q87PM5_VIBPA VP1476 1476 1-105 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 002647287 e6m36N1 002989115 Q87PQ2_nD2 Q87PQ2 Q87PQ2_VIBPA VP1449 1449 176-280 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 000184933 e2vpwC2 002989116 Q87PQ2_nD1 Q87PQ2 Q87PQ2_VIBPA VP1449 1449 1-175 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002542985 e6rkoA2 002989117 Q87KU6_nD1 Q87KU6 AROQ_VIBPA VP2879 aroQ 3-dehydroquinate dehydratase 2878 1-149 f a.17 2007 2007.1 2007.1.12 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Type II 3-dehydroquinate dehydratase 002547435 e6hsuG1 002989118 Q87IG4_nD1 Q87IG4 Q87IG4_VIBPA VPA0642 3721 1-215 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 002390780 e5y6lC1 002989119 Q87HV6_nD1 Q87HV6 Y4850_VIBPA VPA0850 UPF0312 protein VPA0850 3929 21-189 f a.1 9 9.5 9.5.1 beta barrels Lipocalins/Streptavidin Hypothetical protein TT1927B Hypothetical protein TT1927B 000000865 e1y0gA1 002989120 Q87JX8_nD1 Q87JX8 Q87JX8_VIBPA VPA0120 Fer2_3 domain-containing protein 3199 21-110 f a.7 632 632.1 632.1.1 alpha bundles immunoglobulin/albumin-binding domain-like Families 57/38 glycoside transferase middle domain Families 57/38 glycoside transferase middle domain 000145936 e3rguA1 002989121 Q87M68_nD1 Q87M68 Q87M68_VIBPA VP2390 Short-chain dehydrogenase 2390 6-390 f a.9 5038 5038.1 5038.1.1 alpha superhelices Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 002717134 e6xkwn1 002989122 Q87KM9_nD1 Q87KM9 UBIA_VIBPA VP2948 ubiA 4-hydroxybenzoate octaprenyltransferase 2947 11-280 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 001283747 e4od4F1 002989123 Q87R46_nD1 Q87R46 Q87R46_VIBPA VP0952 DUF2955 domain-containing protein 952 1-240 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002989124 Q87JG3_nD1 Q87JG3 Q87JG3_VIBPA VPA0290 3369 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002989125 Q87JG3_nD2 Q87JG3 Q87JG3_VIBPA VPA0290 3369 81-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002989126 Q87P29_nD1 Q87P29 Q87P29_VIBPA VP1689 1689 26-35,57-235 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000998556 e4j8sA1 002989127 Q87JN2_nD3 Q87JN2 Q87JN2_VIBPA VPA0216 3295 161-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600822 e3hhfA1 002989128 Q87JN2_nD2 Q87JN2 Q87JN2_VIBPA VPA0216 3295 91-160,266-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002989129 Q87JN2_nD1 Q87JN2 Q87JN2_VIBPA VPA0216 3295 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002989130 Q87RL4_nD2 Q87RL4 Q87RL4_VIBPA VP0764 764 191-319 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001087067 e4g88D1 002989131 Q87RL4_nD1 Q87RL4 Q87RL4_VIBPA VP0764 764 21-175 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002989132 Q87GE7_nD1 Q87GE7 Q87GE7_VIBPA VPA1369 LytR_C domain-containing protein 4448 36-200 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000420099 e3ngmD1 002989133 Q87KK8_nD1 Q87KK8 Q87KK8_VIBPA VP2969 protein-tyrosine-phosphatase 2968 6-160 f a.17 2007 2007.2 2007.2.3 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like (Phosphotyrosine protein) phosphatases II 000105334 e1fq1A1 002989134 Q87FE8_nD4 Q87FE8 Q87FE8_VIBPA VPA1731 histidine kinase 4810 351-445 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989135 Q87FE8_nD3 Q87FE8 Q87FE8_VIBPA VPA1731 histidine kinase 4810 321-350 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002989136 Q87FE8_nD1 Q87FE8 Q87FE8_VIBPA VPA1731 histidine kinase 4810 31-285 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002989137 Q87FE8_nD5 Q87FE8 Q87FE8_VIBPA VPA1731 histidine kinase 4810 446-605 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002989138 Q87FE8_nD2 Q87FE8 Q87FE8_VIBPA VPA1731 histidine kinase 4810 6-30,286-320 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989139 Q87N61_nD4 Q87N61 Q87N61_VIBPA VP2014 2014 871-1030 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 000000022 e1kqfA1 002989140 Q87N61_nD3 Q87N61 Q87N61_VIBPA VP2014 2014 156-255,551-780,801-870 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002440707 e6cz7C3 002989141 Q87N61_nD2 Q87N61 Q87N61_VIBPA VP2014 2014 256-550 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002105089 e2ivfA6 002989142 Q87N61_nD1 Q87N61 Q87N61_VIBPA VP2014 2014 56-155 f a.11 1001 1001.1 1001.1.1 a+b two layers Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 001685761 e1h0hK3 002989143 Q87M37_nD3 Q87M37 Q87M37_VIBPA VP2421 AAA domain-containing protein 2421 356-435 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001556750 e4xguB2 002989144 Q87M37_nD2 Q87M37 Q87M37_VIBPA VP2421 AAA domain-containing protein 2421 11-20,121-355 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000169530 e3dzdA1 002989145 Q87M37_nD1 Q87M37 Q87M37_VIBPA VP2421 AAA domain-containing protein 2421 21-115 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000166543 e3bj6A1 002989146 Q87GF8_nD1 Q87GF8 Q87GF8_VIBPA VPA1358 4437 16-149 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 000236079 e4hynA1 002989147 Q87GF8_nD2 Q87GF8 Q87GF8_VIBPA VPA1358 4437 166-190 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 001557787 e4yx5A1 002989148 Q87FZ3_nD1 Q87FZ3 Y5527_VIBPA VPA1527 Probable phosphatase VPA1527 4606 1-245 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008707 e1m65A1 002989149 Q87HQ4_nD6 Q87HQ4 Q87HQ4_VIBPA VPA0908 3987 556-605 f a.11 3018 3018.1 3018.1.1 a+b two layers MesJ substrate recognition domain-like MesJ substrate recognition domain-like MesJ substrate recognition domain-like 000330723 e2e21A1 002989150 Q87HQ4_nD1 Q87HQ4 Q87HQ4_VIBPA VPA0908 3987 6-90,191-205 f a.19 375 375.1 375.1.9 few secondary structure elements Rubredoxin-like Rubredoxin-related Zinc-nucleated domain of serine integrase 001144772 e4kisA2 002989151 Q87HQ4_nD2 Q87HQ4 Q87HQ4_VIBPA VPA0908 3987 96-190 f a.19 375 375.1 375.1.9 few secondary structure elements Rubredoxin-like Rubredoxin-related Zinc-nucleated domain of serine integrase 001144772 e4kisA2 002989152 Q87HQ4_nD5 Q87HQ4 Q87HQ4_VIBPA VPA0908 3987 461-525 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001401871 e4qc6A1 002989153 Q87HQ4_nD3 Q87HQ4 Q87HQ4_VIBPA VPA0908 3987 216-260,526-540 f 002989154 Q87HQ4_nD4 Q87HQ4 Q87HQ4_VIBPA VPA0908 3987 206-215,261-460 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000139956 e2x3gA1 002989155 Q87GD9_nD1 Q87GD9 Q87GD9_VIBPA VPA1377 4456 16-40 f a.21 5074 5074.1 5074.1.1 extended segments Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits 000004771 e1nkzB1 002989156 Q87K01_nD3 Q87K01 Q87K01_VIBPA VPA0097 3176 51-85,206-240 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002989157 Q87K01_nD4 Q87K01 Q87K01_VIBPA VPA0097 3176 111-180 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002989158 Q87K01_nD1 Q87K01 Q87K01_VIBPA VPA0097 3176 11-40 f a.21 5031 5031.1 5031.1.1 extended segments Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ 002545203 e6kacj1 002989159 Q87K01_nD2 Q87K01 Q87K01_VIBPA VPA0097 3176 86-110,186-205 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002154538 e5xu0B1 002989160 Q87K01_nD5 Q87K01 Q87K01_VIBPA VPA0097 3176 41-50,241-335 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002989161 Q87JA1_nD1 Q87JA1 Q87JA1_VIBPA VPA0352 3431 17-290 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001386964 e4jbwF3 002989162 Q87IG9_nD1 Q87IG9 Q87IG9_VIBPA VPA0637 3716 26-245 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989163 Q87L07_nD1 Q87L07 HFQ_VIBPA VP2817 hfq RNA-binding protein Hfq 2816 6-70 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002490287 e6gwkJ1 002989164 Q87FQ3_nD1 Q87FQ3 Q87FQ3_VIBPA VPA1625 Secreted protein 4704 36-140 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001070873 e4kh9A2 002989165 Q87IQ2_nD1 Q87IQ2 Q87IQ2_VIBPA VPA0554 3633 6-130 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000170705 e3ewkA2 002989166 Q87IQ2_nD2 Q87IQ2 Q87IQ2_VIBPA VPA0554 3633 131-275 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001177497 e3rtyE5 002989167 Q87IQ2_nD3 Q87IQ2 Q87IQ2_VIBPA VPA0554 3633 276-440 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002989168 Q87GP0_nD1 Q87GP0 Q87GP0_VIBPA VPA1275 4354 1-235 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000143931 e3p19A1 002989169 Q87MP7_nD3 Q87MP7 Q87MP7_VIBPA VP2184 2184 161-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002989170 Q87MP7_nD2 Q87MP7 Q87MP7_VIBPA VP2184 2184 91-160,261-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002989171 Q87MP7_nD1 Q87MP7 Q87MP7_VIBPA VP2184 2184 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002989172 Q87SL6_nD1 Q87SL6 Q87SL6_VIBPA VP0406 Glutamyl-tRNA amidotransferase 406 1-145 f a.6 610 610.4 610.4.1 alpha arrays ERP29 C domain-like YqeY domain YqeY domain 000003248 e1ng6A1 002989173 Q87FR8_nD1 Q87FR8 Q87FR8_VIBPA VPA1610 DUF1232 domain-containing protein 4689 21-75,106-124 f a.7 632 632.1 632.1.1 alpha bundles immunoglobulin/albumin-binding domain-like Families 57/38 glycoside transferase middle domain Families 57/38 glycoside transferase middle domain 000003587 e2b5dX1 002989174 Q87LQ1_nD1 Q87LQ1 FTSB_VIBPA VP2560 ftsB Cell division protein FtsB 2560 26-70 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 002762692 e7m3pB1 002989175 Q87FV0_nD1 Q87FV0 Q87FV0_VIBPA VPA1578 FUSC family protein 4657 156-355 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 000137835 e3l39A1 002989176 Q87FV0_nD2 Q87FV0 Q87FV0_VIBPA VPA1578 FUSC family protein 4657 6-150,371-520 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002989177 Q87FV0_nD3 Q87FV0 Q87FV0_VIBPA VPA1578 FUSC family protein 4657 521-720 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 000137835 e3l39A1 002989178 Q87QZ9_nD1 Q87QZ9 Q87QZ9_VIBPA VP0999 999 21-258 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989179 Q87IB1_nD1 Q87IB1 Q87IB1_VIBPA VPA0695 3774 21-215 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 001065880 e4fuvA1 002989180 Q87KX6_nD2 Q87KX6 Q87KX6_VIBPA VP2848 Broad specificity amino-acid racemase 2847 6-30,266-390 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000223310 e4dyjA1 002989181 Q87KX6_nD1 Q87KX6 Q87KX6_VIBPA VP2848 Broad specificity amino-acid racemase 2847 16-265 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001140157 e4bf5B2 002989182 Q87KP9_nD2 Q87KP9 NUSG_VIBPA VP2927 nusG Transcription termination/antitermination protein NusG 2926 126-180 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000139146 e2kvqG1 002989183 Q87KP9_nD1 Q87KP9 NUSG_VIBPA VP2927 nusG Transcription termination/antitermination protein NusG 2926 6-125 f a.11 304 304.17 304.17.1 a+b two layers Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain 000065156 e1nppA3 002989184 Q87JU7_nD3 Q87JU7 Q87JU7_VIBPA VPA0151 DUF3450 domain-containing protein 3230 161-245 f a.11 4099 4099.1 4099.1.1 a+b two layers Kinetochore globular domain-like Kinetochore globular domain-like Kinetochore globular domain-like 001511283 e2ve7B3 002989185 Q87JU7_nD2 Q87JU7 Q87JU7_VIBPA VPA0151 DUF3450 domain-containing protein 3230 96-160 f a.7 632 632.7 632.7.1 alpha bundles immunoglobulin/albumin-binding domain-like Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 002664097 e6zhiB2 002989186 Q87JU7_nD1 Q87JU7 Q87JU7_VIBPA VPA0151 DUF3450 domain-containing protein 3230 26-95 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002321117 e6gapA2 002989187 Q87NK3_nD3 Q87NK3 Q87NK3_VIBPA VP1865 1865 261-315 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000299164 e2a3vD2 002989188 Q87NK3_nD2 Q87NK3 Q87NK3_VIBPA VP1865 1865 106-260 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000299163 e2a3vD1 002989189 Q87NK3_nD1 Q87NK3 Q87NK3_VIBPA VP1865 1865 6-105 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 000299165 e2a3vD3 002989190 Q87HM4_nD1 Q87HM4 Q87HM4_VIBPA VPA0939 Multidrug resistance protein NorM 4018 1-235 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002808851 e6z70A2 002989191 Q87HM4_nD2 Q87HM4 Q87HM4_VIBPA VPA0939 Multidrug resistance protein NorM 4018 241-450 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002989192 Q87JC3_nD1 Q87JC3 Q87JC3_VIBPA VPA0330 DUF1611 domain-containing protein 3409 1-125 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000313338 e2obnD1 002989193 Q87JC3_nD2 Q87JC3 Q87JC3_VIBPA VPA0330 DUF1611 domain-containing protein 3409 131-334 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000313339 e2obnD2 002989194 Q87QJ4_nD1 Q87QJ4 PACE_VIBPA VP1155 Short-chain diamines transporter 1155 6-130 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002323855 e5mlzA1 002989195 Q87PQ0_nD2 Q87PQ0 Q87PQ0_VIBPA VP1451 1451 96-165 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002816406 e7bkbK2 002989196 Q87PQ0_nD1 Q87PQ0 Q87PQ0_VIBPA VP1451 1451 36-95 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002547686 e6qgtG1 002989197 Q87NE4_nD1 Q87NE4 Q87NE4_VIBPA VP1924 1924 31-175 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000161629 e2b1kA1 002989198 Q87HI2_nD1 Q87HI2 Q87HI2_VIBPA VPA0983 DUF4174 domain-containing protein 4062 21-135 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002142613 e5xbrA1 002989199 Q87KE2_nD1 Q87KE2 TSAC_VIBPA VP3035 tsaC Threonylcarbamoyl-AMP synthase 3034 6-185 f a.14 297 297.1 297.1.1 a+b complex topology YrdC/RibB YrdC/RibB YrdC/RibB 002321100 e6f89A2 002989200 Q87LL9_nD2 Q87LL9 RPIA_VIBPA VP2592 rpiA Ribose-5-phosphate isomerase A 2591 131-195 f a.11 304 304.30 304.30.1 a+b two layers Alpha-beta plaits D-ribose-5-phosphate isomerase (RpiA), lid domain D-ribose-5-phosphate isomerase (RpiA), lid domain 001190013 e4m8lA3 002989201 Q87LL9_nD1 Q87LL9 RPIA_VIBPA VP2592 rpiA Ribose-5-phosphate isomerase A 2591 1-130,196-218 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 000099943 e1m0sA2 002989202 Q87MC4_nD1 Q87MC4 Q87MC4_VIBPA VP2332 TsaA-like domain-containing protein 2332 1-150 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002723205 e7btuA1 002989203 Q87MC4_nD2 Q87MC4 Q87MC4_VIBPA VP2332 TsaA-like domain-containing protein 2332 151-230 f a.11 4312 4312.2 4312.2.1 a+b two layers RelE-like YaeB-like YaeB-like 002723206 e7btuA2 002989204 Q87MX7_nD1 Q87MX7 LUXO_VIBPA VP2099 luxO Regulatory protein LuxO 2099 1-125 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001822144 e5ep0A2 002989205 Q87MX7_nD2 Q87MX7 LUXO_VIBPA VP2099 luxO Regulatory protein LuxO 2099 126-300 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002989206 Q87MX7_nD3 Q87MX7 LUXO_VIBPA VP2099 luxO Regulatory protein LuxO 2099 301-380 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001822146 e5ep1A1 002989207 Q87MX7_nD4 Q87MX7 LUXO_VIBPA VP2099 luxO Regulatory protein LuxO 2099 381-445 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000976181 e4izzB1 002989208 Q87RZ9_nD1 Q87RZ9 Q87RZ9_VIBPA VP0625 DUF6795 domain-containing protein 625 26-185 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000153287 e3uafA1 002989209 Q87J26_nD1 Q87J26 Q87J26_VIBPA VPA0427 3506 16-365 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008987 e1oltA2 002989210 Q87J26_nD2 Q87J26 Q87J26_VIBPA VPA0427 3506 6-15,366-445 f a.6 101 101.19 101.19.1 alpha arrays HTH C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN 000002911 e1oltA1 002989211 Q87JP0_nD1 Q87JP0 Q87JP0_VIBPA VPA0208 Osmotically inducible protein OsmC 3287 1-130 f a.11 324 324.1 324.1.1 a+b two layers OsmC-like OsmC-like OsmC-like 000005880 e1ml8A1 002989212 Q87RU8_nD2 Q87RU8 NRDR_VIBPA VP0678 nrdR Transcriptional repressor NrdR 678 46-130 f a.6 103 103.2 103.2.1 alpha arrays RuvA-C ATP cone ATP cone 002141738 e5olkA2 002989213 Q87RU8_nD1 Q87RU8 NRDR_VIBPA VP0678 nrdR Transcriptional repressor NrdR 678 1-45 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001765802 e4rv9A1 002989214 Q87JK0_nD2 Q87JK0 Q87JK0_VIBPA VPA0249 3328 86-160,266-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002601136 e3kosA1 002989215 Q87JK0_nD1 Q87JK0 Q87JK0_VIBPA VPA0249 3328 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002989216 Q87JK0_nD3 Q87JK0 Q87JK0_VIBPA VPA0249 3328 161-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002601136 e3kosA1 002989217 Q87L09_nD1 Q87L09 Q87L09_VIBPA VP2813 DUF2065 domain-containing protein 2812 6-60 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002989218 Q87M30_nD4 Q87M30 EFG2_VIBPA VP2428 fusA2 Elongation factor G 2 2428 481-600 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001231459 e2xexB8 002989219 Q87M30_nD3 Q87M30 EFG2_VIBPA VP2428 fusA2 Elongation factor G 2 2428 401-480 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 002770190 e7n2vEF4 002989220 Q87M30_nD1 Q87M30 EFG2_VIBPA VP2428 fusA2 Elongation factor G 2 2428 6-285 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002770187 e7n2vEF1 002989221 Q87M30_nD5 Q87M30 EFG2_VIBPA VP2428 fusA2 Elongation factor G 2 2428 601-675 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 000005297 e2dy1A3 002989222 Q87M30_nD2 Q87M30 EFG2_VIBPA VP2428 fusA2 Elongation factor G 2 2428 286-400 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002447122 e6notA1 002989223 Q87JS9_nD1 Q87JS9 Q87JS9_VIBPA VPA0169 3248 6-305 f a.17 2006 2006.1 2006.1.5 a/b three-layered sandwiches HAD domain-like HAD domain-related Arginase/deacetylase 002754395 e7lolA1 002989224 Q87M64_nD1 Q87M64 Q87M64_VIBPA VP2394 2394 1-220 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002817096 e7l17A1 002989225 Q87M64_nD2 Q87M64 Q87M64_VIBPA VP2394 2394 221-425 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002817097 e7l17A2 002989226 Q87N48_nD2 Q87N48 Q87N48_VIBPA VP2027 lapB Lipopolysaccharide assembly protein B 2027 356-385 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001713370 e4zlhB2 002989227 Q87N48_nD1 Q87N48 Q87N48_VIBPA VP2027 lapB Lipopolysaccharide assembly protein B 2027 1-355 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001713369 e4zlhB1 002989228 Q87MJ8_nD2 Q87MJ8 Q87MJ8_VIBPA VP2244 2244 306-340 f a.9 109 109.49 109.49.1 alpha superhelices Repetitive alpha hairpins Helical domain in acetyl-CoA carboxylase Helical domain in acetyl-CoA carboxylase 001701041 e5csaA4 002989229 Q87MJ8_nD1 Q87MJ8 Q87MJ8_VIBPA VP2244 2244 151-175 f a.19 386 386.1 386.1.1 few secondary structure elements beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 000389331 e3mhhC1 002989230 Q87MJ8_nD3 Q87MJ8 Q87MJ8_VIBPA VP2244 2244 501-600 f a.11 3186 3186.1 3186.1.1 a+b two layers C-terminal domain of FliK C-terminal domain of FliK C-terminal domain of FliK 000146964 e2rrlA1 002989231 Q87N80_nD1 Q87N80 Q87N80_VIBPA VP1995 1995 6-239 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002417768 e5gkoA1 002989232 P19249_nD1 P19249 HLY1_VIBPA VPA1378 tdh1 Thermostable direct hemolysin 1 4457 36-189 f a.3 11 11.8 11.8.1 beta sandwiches Immunoglobulin-like beta-sandwich Osmotin-like Osmotin-like 000138722 e3a57A1 002989233 Q87GT9_nD2 Q87GT9 Y5226_VIBPA VPA1226 UPF0265 protein VPA1226 4305 36-100 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 002762692 e7m3pB1 002989234 Q87GT9_nD1 Q87GT9 Y5226_VIBPA VPA1226 UPF0265 protein VPA1226 4305 6-35 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 002762692 e7m3pB1 002989235 Q87K41_nD1 Q87K41 PPNP_VIBPA VPA0057 ppnP Pyrimidine/purine nucleoside phosphorylase 3136 1-94 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002831709 e7eyjA1 002989236 Q87HX6_nD1 Q87HX6 Q87HX6_VIBPA VPA0830 3909 11-190 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002080415 e5nlaA2 002989237 Q87HX6_nD2 Q87HX6 Q87HX6_VIBPA VPA0830 3909 196-290 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001839954 e5chhA2 002989238 Q87JD7_nD1 Q87JD7 Q87JD7_VIBPA VPA0316 3395 21-125,146-204 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002989239 Q87QP1_nD2 Q87QP1 SYS_VIBPA VP1108 serS Serine--tRNA ligase 1108 111-435 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 002482295 e6h9xA1 002989240 Q87QP1_nD1 Q87QP1 SYS_VIBPA VP1108 serS Serine--tRNA ligase 1108 1-110 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 002482296 e6h9xA2 002989241 Q87JA3_nD2 Q87JA3 Q87JA3_VIBPA VPA0350 3429 236-339 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001265607 e2awnB5 002989242 Q87JA3_nD1 Q87JA3 Q87JA3_VIBPA VPA0350 3429 1-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002989243 Q87H54_nD2 Q87H54 Q87H54_VIBPA VPA1111 4190 111-225 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001881806 e2rf1A2 002989244 Q87H54_nD1 Q87H54 Q87H54_VIBPA VPA1111 4190 13-110,226-310 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001881805 e2rf1A1 002989245 Q87MA2_nD1 Q87MA2 Q87MA2_VIBPA VP2355 Peptidyl-prolyl cis-trans isomerase 2355 16-180 f a.1 75 75.1 75.1.1 beta barrels Cyclophilin-like Cyclophilin-like Cyclophilin-like 000000778 e1v9tA1 002989246 Q87JS5_nD2 Q87JS5 RIMK_VIBPA VPA0173 rimK Probable alpha-L-glutamate ligase 3252 96-290 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 002408539 e5zctH2 002989247 Q87JS5_nD1 Q87JS5 RIMK_VIBPA VPA0173 rimK Probable alpha-L-glutamate ligase 3252 1-95 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 002408538 e5zctH1 002989248 Q87N03_nD1 Q87N03 DSBB_VIBPA VP2073 dsbB Disulfide bond formation protein B 2073 6-170 f a.7 633 633.13 633.13.1 alpha bundles Bromodomain-like DsbB-like DsbB-like 002715280 e6wvfA1 002989249 Q87I00_nD2 Q87I00 Q87I00_VIBPA VPA0806 3885 81-215 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 001566280 e5c4yB1 002989250 Q87I00_nD1 Q87I00 Q87I00_VIBPA VPA0806 3885 1-80,221-230 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000176312 e3mvpA1 002989251 Q87FU4_nD1 Q87FU4 Y5584_VIBPA VPA1584 UPF0319 protein VPA1584 4663 21-155 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000149140 e2laaA1 002989252 Q87SY5_nD1 Q87SY5 Q87SY5_VIBPA VP0287 287 1-150 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002447176 e5z6nB1 002989253 Q87NY6_nD1 Q87NY6 Q87NY6_VIBPA VP1732 1732 1-260 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001790180 e5bp4A6 002989254 Q87KQ0_nD1 Q87KQ0 RL11_VIBPA VP2926 rplK 50S ribosomal protein L11 2925 6-75 f a.11 3781 3781.1 3781.1.1 a+b two layers Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain 002718731 e6yweg2 002989255 Q87KQ0_nD2 Q87KQ0 RL11_VIBPA VP2926 rplK 50S ribosomal protein L11 2925 76-140 f a.6 101 101.1 101.1.16 alpha arrays HTH HTH Ribosomal protein L11, C-terminal domain 001434581 e4v61BK2 002989256 Q05938_nD1 Q05938 TOXR_VIBPA VP0820 toxR Cholera toxin homolog transcriptional activator 820 6-115 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002799659 e7nmbA1 002989257 Q05938_nD2 Q05938 TOXR_VIBPA VP0820 toxR Cholera toxin homolog transcriptional activator 820 206-280 f a.11 330 330.2 330.2.1 a+b two layers dsRBD-like Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue) 000153426 e4heiA1 002989258 Q87SM2_nD1 Q87SM2 Q87SM2_VIBPA VP0400 400 6-70 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 000962518 e3u2fM1 002989259 Q87SM2_nD2 Q87SM2 Q87SM2_VIBPA VP0400 400 71-215 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001147702 e4oc8A2 002989260 Q87SM2_nD3 Q87SM2 Q87SM2_VIBPA VP0400 400 231-270 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000008012 e1twfI1 002989261 Q87IX0_nD1 Q87IX0 Q87IX0_VIBPA VPA0486 Endo/exonuclease/phosphatase domain-containing protein 3565 6-75 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000429313 e3qtnB2 002989262 Q87IX0_nD2 Q87IX0 Q87IX0_VIBPA VPA0486 Endo/exonuclease/phosphatase domain-containing protein 3565 81-315 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 002088115 e5uvgA1 002989263 Q87PX5_nD2 Q87PX5 Q87PX5_VIBPA VP1375 histidine kinase 1375 151-205,251-285 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989264 Q87PX5_nD1 Q87PX5 Q87PX5_VIBPA VP1375 histidine kinase 1375 1-150 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000379303 e3iwzD1 002989265 Q87PX5_nD3 Q87PX5 Q87PX5_VIBPA VP1375 histidine kinase 1375 211-250 f 002989266 Q87PX5_nD4 Q87PX5 Q87PX5_VIBPA VP1375 histidine kinase 1375 291-440 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001888779 e5idjA1 002989267 Q87LT1_nD1 Q87LT1 RL19_VIBPA VP2530 rplS 50S ribosomal protein L19 2530 6-115 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001955981 e5j8aDQ1 002989268 Q87Q14_nD1 Q87Q14 Q87Q14_VIBPA VP1336 potA Spermidine/putrescine import ATP-binding protein PotA 1336 6-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002989269 Q87Q14_nD2 Q87Q14 Q87Q14_VIBPA VP1336 potA Spermidine/putrescine import ATP-binding protein PotA 1336 241-373 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001265607 e2awnB5 002989270 Q87SZ2_nD1 Q87SZ2 RS13_VIBPA VP0279 rpsM 30S ribosomal protein S13 279 1-115 f a.6 102 102.2 102.2.1 alpha arrays HhH/H2TH H2TH H2TH 002832375 e7p7qn1 002989271 Q87JN7_nD1 Q87JN7 Q87JN7_VIBPA VPA0211 MltA-interacting MipA family protein 3290 51-289 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 002106891 e5o65B1 002989272 Q87J30_nD2 Q87J30 Q87J30_VIBPA VPA0423 3502 151-289 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002051708 e5khlB1 002989273 Q87J30_nD1 Q87J30 Q87J30_VIBPA VPA0423 3502 31-150 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002051709 e5khlB2 002989274 Q87MY7_nD1 Q87MY7 Q87MY7_VIBPA VP2089 2089 31-295 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002989275 Q87RP9_nD1 Q87RP9 Q87RP9_VIBPA VP0728 Zinc ribbon-containing protein 728 6-90 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 000337673 e2vj4A1 002989276 Q87RP9_nD2 Q87RP9 Q87RP9_VIBPA VP0728 Zinc ribbon-containing protein 728 111-150 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001030989 e2gmgA3 002989277 Q87HP6_nD1 Q87HP6 Q87HP6_VIBPA VPA0917 Conjugal transfer protein TraF 3996 26-373 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 000420253 e3pgsA1 002989278 Q87S27_nD1 Q87S27 Q87S27_VIBPA VP0597 Iron-sulfur cluster assembly scaffold protein IscU 597 6-125 f a.11 244 244.3 244.3.1 a+b two layers FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU 000149740 e4eb5C1 002989279 Q87H52_nD2 Q87H52 BETB_VIBPA VPA1113 betB Betaine aldehyde dehydrogenase 4192 251-460 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002640162 e6wsbB1 002989280 Q87H52_nD1 Q87H52 BETB_VIBPA VPA1113 betB Betaine aldehyde dehydrogenase 4192 6-250,461-480 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001900390 e4a0mA2 002989281 Q87FI6_nD3 Q87FI6 Q87FI6_VIBPA VPA1693 Methyl-accepting transducer domain-containing protein 4772 246-360 f a.7 601 601.46 601.46.1 alpha bundles Four-helical up-and-down bundle Regulatory CZB domain of diguanylate cyclase YdeH Regulatory CZB domain of diguanylate cyclase YdeH 001712254 e4zvcA1 002989282 Q87FI6_nD1 Q87FI6 Q87FI6_VIBPA VPA1693 Methyl-accepting transducer domain-containing protein 4772 26-210 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002321117 e6gapA2 002989283 Q87FI6_nD2 Q87FI6 Q87FI6_VIBPA VPA1693 Methyl-accepting transducer domain-containing protein 4772 211-240 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 000136279 e3fx7A1 002989284 Q87J84_nD2 Q87J84 Q87J84_VIBPA VPA0369 3448 191-265 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 002552682 e6kjuB2 002989285 Q87J84_nD1 Q87J84 Q87J84_VIBPA VPA0369 3448 6-170 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002077810 e5xhxA1 002989286 Q87NS8_nD1 Q87NS8 Q87NS8_VIBPA VP1790 CENP-V/GFA domain-containing protein 1790 1-120 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 002645133 e1xa8B1 002989287 Q87GH7_nD2 Q87GH7 Q87GH7_VIBPA VPA1339 4418 96-160 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 001389176 e3gr5A2 002989288 Q87GH7_nD1 Q87GH7 Q87GH7_VIBPA VPA1339 4418 21-95 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 002722150 e7ah95J3 002989289 Q87GH7_nD3 Q87GH7 Q87GH7_VIBPA VPA1339 4418 166-275 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002800448 e7ofhL2 002989290 Q87GH7_nD4 Q87GH7 Q87GH7_VIBPA VPA1339 4418 276-485 f a.1 1139 1139.1 1139.1.1 beta barrels secretin domain secretin domain secretin domain 002800447 e7ofhL1 002989291 Q87NT6_nD1 Q87NT6 Q87NT6_VIBPA VP1782 Na_H_antiporter domain-containing protein 1782 21-494 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002989292 Q87IH2_nD1 Q87IH2 Q87IH2_VIBPA VPA0634 3713 1-360 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002487364 e6qkrB1 002989293 Q87KP6_nD2 Q87KP6 Q87KP6_VIBPA VP2931 birA Bifunctional ligase/repressor BirA 2929 66-270 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000138413 e3l1aA1 002989294 Q87KP6_nD1 Q87KP6 Q87KP6_VIBPA VP2931 birA Bifunctional ligase/repressor BirA 2929 6-65 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002558 e1biaA2 002989295 Q87KP6_nD3 Q87KP6 Q87KP6_VIBPA VP2931 birA Bifunctional ligase/repressor BirA 2929 271-315 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001405101 e4wf2A2 002989296 Q87LH6_nD1 Q87LH6 Q87LH6_VIBPA VP2636 Permease IIC component 2635 11-425 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 000416667 e3qnqC1 002989297 Q87HV7_nD1 Q87HV7 Q87HV7_VIBPA VPA0849 3928 6-179 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002388407 e5oc0A1 002989298 Q87Q70_nD4 Q87Q70 SYT_VIBPA VP1280 thrS Threonine--tRNA ligase 1280 541-635 f a.17 7502 7502.1 7502.1.1 a/b three-layered sandwiches Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS 000010322 e1qf6A4 002989299 Q87Q70_nD3 Q87Q70 SYT_VIBPA VP1280 thrS Threonine--tRNA ligase 1280 241-540 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000007012 e1qf6A3 002989300 Q87Q70_nD2 Q87Q70 SYT_VIBPA VP1280 thrS Threonine--tRNA ligase 1280 66-240 f a.11 309 309.1 309.1.2 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain 002588826 e6vu9A3 002989301 Q87Q70_nD1 Q87Q70 SYT_VIBPA VP1280 thrS Threonine--tRNA ligase 1280 1-65 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006212 e1tkeA2 002989302 Q87PC5_nD1 Q87PC5 FABA_VIBPA VP1591 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase 1592 6-170 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 001720755 e5f6rB1 002989303 Q87MV8_nD1 Q87MV8 Q87MV8_VIBPA VP2123 2123 11-280 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002794037 e7e7zC1 002989304 Q87N09_nD1 Q87N09 URK_VIBPA VP2067 udk Uridine kinase 2067 1-213 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000420650 e3aszB1 002989305 Q87HU7_nD2 Q87HU7 Q87HU7_VIBPA VPA0859 3938 356-380 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002793415 e7dkjC1 002989306 Q87HU7_nD1 Q87HU7 Q87HU7_VIBPA VPA0859 3938 36-65,96-245 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001806461 e2ra1A4 002989307 Q87HU7_nD3 Q87HU7 Q87HU7_VIBPA VPA0859 3938 66-95,246-255,281-355,431-800 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002606335 e5bv7A1 002989308 Q87Q83_nD1 Q87Q83 Q87Q83_VIBPA VP1267 1267 41-70 f a.7 3892 3892.1 3892.1.1 alpha bundles Transhydrogeanse domain II Transhydrogeanse domain II Transhydrogeanse domain II 001482387 e4o93A1 002989309 Q87Q83_nD2 Q87Q83 Q87Q83_VIBPA VP1267 1267 71-220 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 002463733 e6jfwB1 002989310 Q87IW4_nD1 Q87IW4 Q87IW4_VIBPA VPA0492 6-phosphogluconolactonase 3571 6-344 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 000143915 e3scyA1 002989311 Q87RP0_nD2 Q87RP0 Q87RP0_VIBPA VP0737 ychF Ribosome-binding ATPase YchF 737 296-380 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006214 e1jalA1 002989312 Q87RP0_nD1 Q87RP0 Q87RP0_VIBPA VP0737 ychF Ribosome-binding ATPase YchF 737 21-295 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009611 e1jalA2 002989313 Q87PM4_nD1 Q87PM4 Q87PM4_VIBPA VP1477 1477 26-200 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001406656 e4d05A2 002989314 Q87PM4_nD2 Q87PM4 Q87PM4_VIBPA VP1477 1477 201-275 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002390078 e6gdrA1 002989315 Q87RS8_nD3 Q87RS8 Q87RS8_VIBPA VP0699 699 96-165 f a.7 632 632.2 632.2.1 alpha bundles immunoglobulin/albumin-binding domain-like Bacterial immunoglobulin/albumin-binding domains Bacterial immunoglobulin/albumin-binding domains 002491382 e5wahA1 002989316 Q87RS8_nD4 Q87RS8 Q87RS8_VIBPA VP0699 699 176-215 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002137468 e5nenB1 002989317 Q87RS8_nD2 Q87RS8 Q87RS8_VIBPA VP0699 699 31-95 f a.8 4307 4307.1 4307.1.1 alpha duplicates or obligate multimers EB1 dimerisation domain-like EB1 dimerisation domain-like EB1 dimerisation domain-like 001931251 e5m9eB1 002989318 Q87RS8_nD5 Q87RS8 Q87RS8_VIBPA VP0699 699 216-360 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002989319 Q87RS8_nD1 Q87RS8 Q87RS8_VIBPA VP0699 699 6-30 f a.7 192 192.4 192.4.1 alpha bundles Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) 001033219 e1r73A1 002989320 Q87RS8_nD6 Q87RS8 Q87RS8_VIBPA VP0699 699 361-520 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002712634 e6ttsB1 002989321 Q87H99_nD1 Q87H99 Q87H99_VIBPA VPA1066 4145 1-144 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001291869 e4hnyD1 002989322 Q87G92_nD2 Q87G92 Q87G92_VIBPA VPA1425 mannose-6-phosphate isomerase 4504 171-255 f a.6 3691 3691.1 3691.1.1 alpha arrays Phosphomannose isomerase helical insertion domain Phosphomannose isomerase helical insertion domain Phosphomannose isomerase helical insertion domain 001138168 e2wfpA2 002989323 Q87G92_nD1 Q87G92 Q87G92_VIBPA VPA1425 mannose-6-phosphate isomerase 4504 21-170,256-325 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001138167 e2wfpA1 002989324 Q87G92_nD3 Q87G92 Q87G92_VIBPA VPA1425 mannose-6-phosphate isomerase 4504 326-410 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001138169 e2wfpA3 002989325 Q87HT9_nD1 Q87HT9 Q87HT9_VIBPA VPA0867 3946 16-120 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002654 e1cf7B1 002989326 Q87HT9_nD2 Q87HT9 Q87HT9_VIBPA VPA0867 3946 151-205 f a.7 650 650.1 650.1.1 alpha bundles Chaperone J-domain Chaperone J-domain Chaperone J-domain 000003693 e1gh6A1 002989327 Q87QD7_nD1 Q87QD7 Q87QD7_VIBPA VP1212 1212 1-120 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002989328 Q87QD7_nD2 Q87QD7 Q87QD7_VIBPA VP1212 1212 126-219 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001824448 e5ed4E1 002989329 Q87MG4_nD3 Q87MG4 Q87MG4_VIBPA VP2291 Glutamate synthase 2291 236-330 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001070873 e4kh9A2 002989330 Q87MG4_nD4 Q87MG4 Q87MG4_VIBPA VP2291 Glutamate synthase 2291 341-375 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001162918 e4bsjA3 002989331 Q87MG4_nD1 Q87MG4 Q87MG4_VIBPA VP2291 Glutamate synthase 2291 26-110 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002475341 e6nfqB1 002989332 Q87MG4_nD2 Q87MG4 Q87MG4_VIBPA VP2291 Glutamate synthase 2291 111-235 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000032840 e2dj4A1 002989333 Q87MG4_nD5 Q87MG4 Q87MG4_VIBPA VP2291 Glutamate synthase 2291 376-400 f a.21 3569 3569.1 3569.1.1 extended segments Epidermal growth factor receptor transmembrane-juxtamembrane segment-like Epidermal growth factor receptor transmembrane-juxtamembrane segment Epidermal growth factor receptor transmembrane-juxtamembrane segment 001764134 e2n2aA1 002989334 Q87NG3_nD1 Q87NG3 BCCT3_VIBPA VP1905 Glycine betaine transporter 1 1905 6-523 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 001108697 e4c7rA1 002989335 Q87GY7_nD1 Q87GY7 Q87GY7_VIBPA VPA1178 4257 1-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001594930 e2w48A2 002989336 Q87GY7_nD2 Q87GY7 Q87GY7_VIBPA VPA1178 4257 71-330 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 001189959 e4l5jD3 002989337 Q87FW7_nD1 Q87FW7 Q87FW7_VIBPA VPA1561 HPP family protein 4640 6-145 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002057079 e5mg3D1 002989338 Q87RF4_nD1 Q87RF4 Q87RF4_VIBPA VP0843 Succinate dehydrogenase cytochrome b556 subunit 843 11-130 f a.7 5069 5069.1 5069.1.3 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits 000058226 e1nenC1 002989339 Q87P07_nD1 Q87P07 Q87P07_VIBPA VP1711 Transcriptional regulatory protein 1711 1-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002989340 Q87P07_nD2 Q87P07 Q87P07_VIBPA VP1711 Transcriptional regulatory protein 1711 146-225 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002989341 Q87K72_nD1 Q87K72 Q87K72_VIBPA VPA0026 Metallopeptidase DUF4344 3105 21-250 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001237913 e4arfA2 002989342 Q87GZ7_nD1 Q87GZ7 Q87GZ7_VIBPA VPA1168 Divalent metal cation transporter 4247 16-405 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002803887 e7qiaA1 002989343 Q87TF5_nD1 Q87TF5 Q87TF5_VIBPA VP0114 DUF2489 domain-containing protein 114 6-40 f a.19 912 912.1 912.1.1 few secondary structure elements HIV-1 VPU cytoplasmic domain HIV-1 VPU cytoplasmic domain HIV-1 VPU cytoplasmic domain 001688261 e2n28A1 002989344 Q87TF5_nD2 Q87TF5 Q87TF5_VIBPA VP0114 DUF2489 domain-containing protein 114 41-150 f a.7 601 601.28 601.28.1 alpha bundles Four-helical up-and-down bundle VPS28 C-terminal domain-like VPS28 C-terminal domain-like 000163216 e2j9wA1 002989345 Q87QH2_nD1 Q87QH2 Q87QH2_VIBPA VP1177 1177 56-95,151-185 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002989346 Q87QH2_nD2 Q87QH2 Q87QH2_VIBPA VP1177 1177 96-150 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001070258 e4l8jA1 002989347 Q87QH2_nD3 Q87QH2 Q87QH2_VIBPA VP1177 1177 46-55,186-270 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002067198 e5ng5E1 002989348 Q87QH2_nD4 Q87QH2 Q87QH2_VIBPA VP1177 1177 21-40,276-355 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002989349 Q87SR0_nD2 Q87SR0 Q87SR0_VIBPA VP0362 Sensor protein 362 176-230 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002989350 Q87SR0_nD1 Q87SR0 Q87SR0_VIBPA VP0362 Sensor protein 362 11-175 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002596952 e6py3B2 002989351 Q87SR0_nD3 Q87SR0 Q87SR0_VIBPA VP0362 Sensor protein 362 231-295 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989352 Q87SR0_nD4 Q87SR0 Q87SR0_VIBPA VP0362 Sensor protein 362 286-460 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002989353 Q87T60_nD1 Q87T60 Q87T60_VIBPA VP0210 210 1-220 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001806546 e5ej0A1 002989354 Q87RP8_nD2 Q87RP8 LNT_VIBPA VP0729 lnt Apolipoprotein N-acyltransferase 729 211-480 f a.13 246 246.1 246.1.1 a+b four layers Carbon-nitrogen hydrolase-like Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 002098990 e5n6hB2 002989355 Q87RP8_nD1 Q87RP8 LNT_VIBPA VP0729 lnt Apolipoprotein N-acyltransferase 729 1-205,481-500 f a.10 1175 1175.1 1175.1.1 alpha complex topology Apolipoprotein N-acyltransferase transmembrane domain Apolipoprotein N-acyltransferase transmembrane domain Apolipoprotein N-acyltransferase transmembrane domain 002574268 e6nwrB1 002989356 Q87QS7_nD1 Q87QS7 Q87QS7_VIBPA VP1072 1072 16-445,466-500 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001676530 e4zcfC1 002989357 Q87QS7_nD2 Q87QS7 Q87QS7_VIBPA VP1072 1072 516-605 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000184516 e2a7oA1 002989358 Q87FH8_nD1 Q87FH8 Q87FH8_VIBPA VPA1701 4780 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001290823 e4nb5B1 002989359 Q87FH8_nD2 Q87FH8 Q87FH8_VIBPA VPA1701 4780 91-240 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 001495276 e4p96A2 002989360 Q87IW2_nD1 Q87IW2 Q87IW2_VIBPA VPA0494 3573 21-175 f a.3 11 11.1 11.1.7 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related PEBP-like 000041369 e1fuxB1 002989361 Q87HQ9_nD2 Q87HQ9 Q87HQ9_VIBPA VPA0901 3980 126-250 f a.3 10 10.2 10.2.1 beta sandwiches jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins) 000184943 e2vvfA2 002989362 Q87HQ9_nD1 Q87HQ9 Q87HQ9_VIBPA VPA0901 3980 1-125 f a.3 10 10.2 10.2.1 beta sandwiches jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins) 000184942 e2vvfA1 002989363 Q87SC6_nD1 Q87SC6 END4_VIBPA VP0498 nfo Probable endonuclease 4 498 6-295 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008792 e1qtwA1 002989364 Q87QM3_nD1 Q87QM3 Q87QM3_VIBPA VP1126 DUF3833 domain-containing protein 1126 26-179 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000368876 e3ia8B1 002989365 Q87S36_nD1 Q87S36 TGT_VIBPA VP0588 tgt Queuine tRNA-ribosyltransferase 588 1-375 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000158131 e2ashA1 002989366 Q87I82_nD1 Q87I82 Q87I82_VIBPA VPA0724 3803 6-415 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102222 e2pt7A1 002989367 Q87SJ5_nD1 Q87SJ5 Q87SJ5_VIBPA VP0428 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA 428 6-268 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000173315 e3ib7A1 002989368 Q87FD4_nD1 Q87FD4 Q87FD4_VIBPA VPA1745 4824 16-350 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002162302 e5nxrB1 002989369 Q87GU6_nD1 Q87GU6 Q87GU6_VIBPA VPA1219 4298 6-150 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001066304 e3zplE1 002989370 Q87JI7_nD3 Q87JI7 Q87JI7_VIBPA VPA0263 Flagella basal body P-ring formation protein FlgA 3342 176-235 f a.1 3174 3174.2 3174.2.1 beta barrels Ribosomal protein L14-like Barrel domain in flagellar protein FlgA Barrel domain in flagellar protein FlgA 001395522 e3teeA2 002989371 Q87JI7_nD2 Q87JI7 Q87JI7_VIBPA VPA0263 Flagella basal body P-ring formation protein FlgA 3342 111-175 f a.1 70 70.3 70.3.1 beta barrels beta-clip SET domain-like SET domain-like 000185265 e3frnA3 002989372 Q87JI7_nD1 Q87JI7 Q87JI7_VIBPA VPA0263 Flagella basal body P-ring formation protein FlgA 3342 21-110 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 001312410 e3teeA3 002989373 Q87FX3_nD1 Q87FX3 Q87FX3_VIBPA VPA1547 EAL domain-containing protein 4626 11-265 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 000393645 e3n3tB1 002989374 Q87RN7_nD2 Q87RN7 ISPE_VIBPA VP0740 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 740 166-280 f a.11 304 304.1 304.1.1 a+b two layers Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain 000005224 e1oj4A1 002989375 Q87RN7_nD1 Q87RN7 ISPE_VIBPA VP0740 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 740 6-165,281-290 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000138453 e2ww4A2 002989376 Q87IX9_nD1 Q87IX9 Q87IX9_VIBPA VPA0477 Beta-lactamase 3556 16-283 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 002561203 e6izcA1 002989377 Q87SK7_nD1 Q87SK7 Q87SK7_VIBPA VP0416 416 151-225 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 001688440 e4wfwA1 002989378 Q87MQ4_nD3 Q87MQ4 RECR_VIBPA VP2177 recR Recombination protein RecR 2177 81-175 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 001411115 e3vdpD3 002989379 Q87MQ4_nD2 Q87MQ4 RECR_VIBPA VP2177 recR Recombination protein RecR 2177 51-80 f a.19 376 376.1 376.1.1 few secondary structure elements RING/U-box-like RING/U-box-like RING/U-box 002488261 e5zvqA2 002989380 Q87MQ4_nD1 Q87MQ4 RECR_VIBPA VP2177 recR Recombination protein RecR 2177 6-50 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 002429634 e5z2vB2 002989381 Q87MU7_nD1 Q87MU7 Q87MU7_VIBPA VP2134 Restriction endonuclease 2134 1-145 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001174325 e4gm2B2 002989382 Q87MU7_nD2 Q87MU7 Q87MU7_VIBPA VP2134 Restriction endonuclease 2134 146-395 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006561 e1th8A1 002989383 Q87LZ6_nD1 Q87LZ6 Q87LZ6_VIBPA VP2462 Dihydropteroate synthase 2462 1-275 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002148227 e5u12B1 002989384 Q87M03_nD1 Q87M03 RBFA_VIBPA VP2455 rbfA Ribosome-binding factor A 2455 6-120 f a.11 327 327.10 327.10.1 a+b two layers Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related 000140202 e2kzfA1 002989385 P59601_nD2 P59601 ARGE_VIBPA VP2760 argE Acetylornithine deacetylase 2759 176-300 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 000405149 e3pfoB1 002989386 P59601_nD1 P59601 ARGE_VIBPA VP2760 argE Acetylornithine deacetylase 2759 1-175,301-378 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 000394753 e3ki9A2 002989387 Q87JH7_nD1 Q87JH7 Q87JH7_VIBPA VPA0276 3355 21-50,96-125,146-670 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001145795 e3zpjA1 002989388 Q87JH7_nD2 Q87JH7 Q87JH7_VIBPA VPA0276 3355 671-904 f a.7 3718 3718.1 3718.1.1 alpha bundles Flagellar protein fliT Flagellar protein fliT Flagellar protein fliT 001068649 e3nkzA1 002989389 Q87LK2_nD1 Q87LK2 Q87LK2_VIBPA VP2610 Ribosomal RNA small subunit methyltransferase E 2609 1-70 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 002136498 e5o95B1 002989390 Q87LK2_nD2 Q87LK2 Q87LK2_VIBPA VP2610 Ribosomal RNA small subunit methyltransferase E 2609 71-240 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 002136499 e5o95B2 002989391 Q87ME0_nD1 Q87ME0 PYRH_VIBPA VP2316 pyrH Uridylate kinase 2316 6-240 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 000109246 e2a1fD1 002989392 Q87K50_nD1 Q87K50 Q87K50_VIBPA VPA0047 Tetratricopeptide repeat protein 3127 6-250 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001148733 e2gw1B1 002989393 Q87I60_nD2 Q87I60 Q87I60_VIBPA VPA0746 3825 166-324 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001710397 e3breB2 002989394 Q87I60_nD1 Q87I60 Q87I60_VIBPA VPA0746 3825 16-165 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 000164917 e2ho9A1 002989395 Q87GG2_nD1 Q87GG2 Q87GG2_VIBPA VPA1354 4433 11-225 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002639168 e6welD1 002989396 Q87GG2_nD2 Q87GG2 Q87GG2_VIBPA VPA1354 4433 251-345 f a.3 4104 4104.1 4104.1.1 beta sandwiches EscU C-terminal domain-like EscU C-terminal domain-like EscU C-terminal domain-like 002718962 e6z0wB1 002989397 Q87PQ3_nD1 Q87PQ3 Q87PQ3_VIBPA VP1448 1448 6-200 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002769939 e7b04A1 002989398 Q87L36_nD1 Q87L36 SLYX_VIBPA VP2780 slyX Protein SlyX homolog 2779 1-55 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001715951 e5cj0B2 002989399 Q87NY8_nD3 Q87NY8 Q87NY8_VIBPA VP1730 1730 386-505 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 001492341 e4wd1A1 002989400 Q87NY8_nD1 Q87NY8 Q87NY8_VIBPA VP1730 1730 1-145 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002073989 e5u89A4 002989401 Q87NY8_nD2 Q87NY8 Q87NY8_VIBPA VP1730 1730 146-385 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002989402 Q87JF5_nD1 Q87JF5 Q87JF5_VIBPA VPA0298 3377 1-145 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000145838 e3urrA1 002989403 Q87P41_nD1 Q87P41 Q87P41_VIBPA VP1677 Hydrolase_4 domain-containing protein 1677 1-339 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002320389 e5xb6H1 002989404 Q87J93_nD2 Q87J93 Q87J93_VIBPA VPA0360 GGDEF domain-containing protein 3439 186-338 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001398117 e4ursB1 002989405 Q87J93_nD1 Q87J93 Q87J93_VIBPA VPA0360 GGDEF domain-containing protein 3439 6-165 f a.7 603 603.1 603.1.1 alpha bundles STAT-like t-snare proteins t-snare proteins 000195607 e2jqqA1 002989406 Q87R57_nD7 Q87R57 Q87R57_VIBPA VP0941 941 661-700,791-845 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002989407 Q87R57_nD6 Q87R57 Q87R57_VIBPA VP0941 941 701-790 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002792356 e7b8sC4 002989408 Q87R57_nD2 Q87R57 Q87R57_VIBPA VP0941 941 181-265 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002989409 Q87R57_nD8 Q87R57 Q87R57_VIBPA VP0941 941 501-550,846-1030 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 001396262 e3w9iF6 002989410 Q87R57_nD5 Q87R57 Q87R57_VIBPA VP0941 941 551-655 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816517 e7cz9B4 002989411 Q87R57_nD3 Q87R57 Q87R57_VIBPA VP0941 941 131-180,266-325 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834886 e4dntA6 002989412 Q87R57_nD4 Q87R57 Q87R57_VIBPA VP0941 941 1-40,326-500 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002989413 Q87R57_nD1 Q87R57 Q87R57_VIBPA VP0941 941 41-130 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001834882 e4dntA2 002989414 Q87IY5_nD1 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 41-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816520 e7cz9B7 002989415 Q87IY5_nD4 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 1-35,331-510 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002989416 Q87IY5_nD3 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 136-185,276-330 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002502614 e6owsA8 002989417 Q87IY5_nD8 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 511-560,866-1040 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002099444 e5lq3F5 002989418 Q87IY5_nD5 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 561-670 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816517 e7cz9B4 002989419 Q87IY5_nD2 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 186-275 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002754736 e7m4pA2 002989420 Q87IY5_nD6 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 721-805 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002792356 e7b8sC4 002989421 Q87IY5_nD7 Q87IY5 Q87IY5_VIBPA VPA0471 Efflux pump membrane transporter 3550 671-720,806-865 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001396259 e3w9iF3 002989422 Q87GZ6_nD1 Q87GZ6 GCH1_VIBPA VPA1169 folE GTP cyclohydrolase 1 4248 1-215 f a.11 230 230.1 230.1.1 a+b two layers T-fold Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 000069337 e1n3tE1 002989423 Q03477_nD1 Q03477 LAFT_VIBPA VPA1556 lafT Chemotaxis protein LafT 4635 6-280 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002989424 Q87HH5_nD3 Q87HH5 Q87HH5_VIBPA VPA0990 DUF11 domain-containing protein 4069 276-405 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002796409 e7kgzB4 002989425 Q87HH5_nD2 Q87HH5 Q87HH5_VIBPA VPA0990 DUF11 domain-containing protein 4069 176-275 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002796409 e7kgzB4 002989426 Q87HH5_nD1 Q87HH5 Q87HH5_VIBPA VPA0990 DUF11 domain-containing protein 4069 1-75,146-170 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002410238 e6fywC1 002989427 Q87R24_nD1 Q87R24 Q87R24_VIBPA VP0974 Peptidoglycan-binding protein CsiV 974 36-133,166-190,236-269 f a.11 3153 3153.1 3153.1.1 a+b two layers PipX PipX PipX 000119300 e2xg8D1 002989428 Q87G88_nD2 Q87G88 Q87G88_VIBPA VPA1429 Diguanylate phosphodiesterase 4508 416-675 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002034028 e5m1tA1 002989429 Q87G88_nD1 Q87G88 Q87G88_VIBPA VPA1429 Diguanylate phosphodiesterase 4508 31-405 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002989430 Q87NR6_nD1 Q87NR6 Q87NR6_VIBPA VP1802 SIR2_2 domain-containing protein 1802 231-290 f a.9 109 109.22 109.22.1 alpha superhelices Repetitive alpha hairpins Survival of motor neuron protein-interacting protein 1 Survival of motor neuron protein-interacting protein 1 002325059 e5xjl21 002989431 Q87NR6_nD2 Q87NR6 Q87NR6_VIBPA VP1802 SIR2_2 domain-containing protein 1802 201-230,251-265,291-515 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 001762777 e5btrB1 002989432 Q87FG5_nD1 Q87FG5 Q87FG5_VIBPA VPA1714 Amidinotransferase 4793 21-333 f a.15 232 232.1 232.1.1 a+b duplicates or obligate multimers Pentein Pentein Pentein 000081380 e1ynfE1 002989433 Q87IG8_nD1 Q87IG8 Q87IG8_VIBPA VPA0638 3717 6-215 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002989434 Q87NV5_nD1 Q87NV5 Q87NV5_VIBPA VP1763 1763 6-160 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045641 e2fbkB1 002989435 Q87IR6_nD1 Q87IR6 Q87IR6_VIBPA VPA0541 DUF2909 domain-containing protein 3619 36-105 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001289566 e4biwB1 002989436 Q87H51_nD1 Q87H51 BETI_VIBPA VPA1114 betI HTH-type transcriptional regulator BetI 4193 1-60 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000137965 e3lhqA1 002989437 Q87H51_nD2 Q87H51 BETI_VIBPA VPA1114 betI HTH-type transcriptional regulator BetI 4193 61-195 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 001566280 e5c4yB1 002989438 Q87M44_nD1 Q87M44 Q87M44_VIBPA VP2414 Pilus assembly protein TadE 2414 11-159 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001890003 e5g24A1 002989439 Q87KH7_nD3 Q87KH7 Q87KH7_VIBPA VP3000 rho Transcription termination factor Rho 2999 131-415 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000139336 e3l0oA3 002989440 Q87KH7_nD2 Q87KH7 Q87KH7_VIBPA VP3000 rho Transcription termination factor Rho 2999 51-125 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001918826 e5jjiB1 002989441 Q87KH7_nD1 Q87KH7 Q87KH7_VIBPA VP3000 rho Transcription termination factor Rho 2999 1-45 f a.6 130 130.1 130.1.1 alpha arrays LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif 000003124 e1a62A2 002989442 Q87KX3_nD1 Q87KX3 CH101_VIBPA VP2852 groES1 Co-chaperonin GroES 1 2851 1-95 f a.1 236 236.1 236.1.2 beta barrels GroES-like GroES-related GroES 001429695 e4v4oo1 002989443 Q87LZ4_nD1 Q87LZ4 RLME_VIBPA VP2464 rlmE Ribosomal RNA large subunit methyltransferase E 2464 11-209 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000009324 e1ej0A1 002989444 Q87HY9_nD1 Q87HY9 Q87HY9_VIBPA VPA0817 S4 RNA-binding domain-containing protein 3896 21-85 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 000006218 e1h3fA1 002989445 Q87SR8_nD1 Q87SR8 Q87SR8_VIBPA VP0354 histidine kinase 354 46-205 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002989446 Q87SR8_nD5 Q87SR8 Q87SR8_VIBPA VP0354 histidine kinase 354 466-625 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002989447 Q87SR8_nD2 Q87SR8 Q87SR8_VIBPA VP0354 histidine kinase 354 1-25,306-335 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 001447959 e4ux3A2 002989448 Q87SR8_nD4 Q87SR8 Q87SR8_VIBPA VP0354 histidine kinase 354 336-465 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002989449 Q87SR8_nD3 Q87SR8 Q87SR8_VIBPA VP0354 histidine kinase 354 26-45,206-305 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002989450 Q87QB5_nD2 Q87QB5 Q87QB5_VIBPA VP1235 1235 206-410 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 002035871 e4rgvB1 002989451 Q87QB5_nD1 Q87QB5 Q87QB5_VIBPA VP1235 1235 21-205 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 002141495 e5yvmA2 002989452 Q87I28_nD3 Q87I28 Q87I28_VIBPA VPA0778 3857 261-450 f a.8 5079 5079.1 5079.1.1 alpha duplicates or obligate multimers Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain 002101903 e5x9hA2 002989453 Q87I28_nD2 Q87I28 Q87I28_VIBPA VPA0778 3857 136-260 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 002076921 e5g5rA1 002989454 Q87I28_nD1 Q87I28 Q87I28_VIBPA VPA0778 3857 21-135 f a.9 109 109.13 109.13.1 alpha superhelices Repetitive alpha hairpins MgtE N-terminal domain-like MgtE N-terminal domain-like 000326759 e2yvyA1 002989455 Q87SF8_nD2 Q87SF8 Q87SF8_VIBPA VP0466 DUF721 domain-containing protein 466 116-145 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000168577 e2v6zM1 002989456 Q87SF8_nD1 Q87SF8 Q87SF8_VIBPA VP0466 DUF721 domain-containing protein 466 11-100 f a.11 327 327.11 327.11.1 a+b two layers Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II) 000005912 e1wf3A1 002989457 Q87K26_nD1 Q87K26 Q87K26_VIBPA VPA0072 3151 1-265 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 000082627 e1e2tE1 002989458 Q87FS2_nD1 Q87FS2 Q87FS2_VIBPA VPA1606 Monooxygenase 4685 1-95 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000005179 e2hiqA1 002989459 Q87H94_nD1 Q87H94 Q87H94_VIBPA VPA1071 4150 16-430 f a.17 2499 2499.1 2499.1.1 a/b three-layered sandwiches Subtilisin-like Subtilisin-like Subtilisin-like 001514577 e3wqbA1 002989460 Q87H94_nD2 Q87H94 Q87H94_VIBPA VPA1071 4150 431-590 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001514578 e3wqbA2 002989461 Q87N07_nD2 Q87N07 SYM_VIBPA VP2069 metG Methionine--tRNA ligase 2069 11-130,191-330 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002489536 e4qrdA1 002989462 Q87N07_nD1 Q87N07 SYM_VIBPA VP2069 metG Methionine--tRNA ligase 2069 131-190 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000132927 e1qu2A4 002989463 Q87N07_nD4 Q87N07 SYM_VIBPA VP2069 metG Methionine--tRNA ligase 2069 571-688 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000159340 e2cwpA1 002989464 Q87N07_nD3 Q87N07 SYM_VIBPA VP2069 metG Methionine--tRNA ligase 2069 331-550 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002494417 e3h9cA4 002989465 Q87NC0_nD1 Q87NC0 EFPL_VIBPA VP1948 Elongation factor P-like protein 1948 1-65 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000026261 e2eifA2 002989466 Q87NC0_nD2 Q87NC0 EFPL_VIBPA VP1948 Elongation factor P-like protein 1948 66-130 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000140391 e3a5zB1 002989467 Q87NC0_nD3 Q87NC0 EFPL_VIBPA VP1948 Elongation factor P-like protein 1948 131-188 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002592270 e6rk3A2 002989468 Q87HG4_nD1 Q87HG4 BSR_VIBPA VPA1001 Broad specificity amino-acid racemase 4080 51-280 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000223311 e4dyjA2 002989469 Q87HG4_nD2 Q87HG4 BSR_VIBPA VPA1001 Broad specificity amino-acid racemase 4080 31-50,281-409 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000223310 e4dyjA1 002989470 Q87Q82_nD2 Q87Q82 Q87Q82_VIBPA VP1268 DUF2786 domain-containing protein 1268 51-160,201-210 f a.11 327 327.11 327.11.2 a+b two layers Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I) 000005919 e2ctkA1 002989471 Q87Q82_nD1 Q87Q82 Q87Q82_VIBPA VP1268 DUF2786 domain-containing protein 1268 1-50 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 001719259 e5cwnA1 002989472 Q87T71_nD2 Q87T71 Q87T71_VIBPA VP0199 199 186-360 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002320415 e5xvsB2 002989473 Q87T71_nD1 Q87T71 Q87T71_VIBPA VP0199 199 6-185,361-395 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002320414 e5xvsB1 002989474 Q87SS5_nD2 Q87SS5 Q87SS5_VIBPA VP0347 SH3b domain-containing protein 347 41-100,191-255 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002771144 e7jl6A1 002989475 Q87SS5_nD1 Q87SS5 Q87SS5_VIBPA VP0347 SH3b domain-containing protein 347 101-190 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001828190 e3m1uB1 002989476 Q87PN9_nD1 Q87PN9 Q87PN9_VIBPA VP1462 1462 41-155 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001447961 e4uxvA1 002989477 Q87PN9_nD2 Q87PN9 Q87PN9_VIBPA VP1462 1462 1-40,421-450 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002989478 Q87PN9_nD4 Q87PN9 Q87PN9_VIBPA VP1462 1462 156-240,316-415 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002989479 Q87PN9_nD3 Q87PN9 Q87PN9_VIBPA VP1462 1462 241-315 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002989480 Q87M26_nD1 Q87M26 Q87M26_VIBPA VP2432 2432 6-30 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002121295 e5ltxA1 002989481 Q87M26_nD2 Q87M26 Q87M26_VIBPA VP2432 2432 36-150 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001283430 e4onxF1 002989482 Q87M26_nD3 Q87M26 Q87M26_VIBPA VP2432 2432 151-185 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002989483 Q87S66_nD1 Q87S66 Q87S66_VIBPA VP0558 bamD Outer membrane protein assembly factor BamD 558 26-240 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002735327 e6sn7D1 002989484 Q87RW0_nD3 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 221-425 f a.12 301 301.2 301.2.1 a+b three layers Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like 001150168 e3viuA16 002989485 Q87RW0_nD7 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 1026-1300 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 002591745 e6jt7A3 002989486 Q87RW0_nD4 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 426-615 f a.11 304 304.111 304.111.1 a+b two layers Alpha-beta plaits PurM C-terminal domain-like PurM C-terminal domain-like 001124701 e4lgyA4 002989487 Q87RW0_nD2 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 156-220 f a.6 103 103.6 103.6.1 alpha arrays RuvA-C FGAM synthase PurL, linker domain FGAM synthase PurL, linker domain 001124698 e4lgyA1 002989488 Q87RW0_nD5 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 616-815 f a.12 301 301.2 301.2.1 a+b three layers Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like 001268224 e3fd5B4 002989489 Q87RW0_nD6 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 816-1025 f a.11 304 304.111 304.111.1 a+b two layers Alpha-beta plaits PurM C-terminal domain-like PurM C-terminal domain-like 001124701 e4lgyA4 002989490 Q87RW0_nD1 Q87RW0 PUR4_VIBPA VP0666 purL Phosphoribosylformylglycinamidine synthase 666 1-150 f a.11 304 304.100 304.100.1 a+b two layers Alpha-beta plaits PurS-like PurS-like 002591747 e6jt7A5 002989491 Q87I94_nD1 Q87I94 Q87I94_VIBPA VPA0712 Ribosome biogenesis GTPase A 3791 6-305 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009614 e1pujA1 002989492 Q87L19_nD1 Q87L19 Q87L19_VIBPA VP2798 2797 1-195 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000009969 e1qdlB1 002989493 Q87QL0_nD2 Q87QL0 HIS8_VIBPA VP1139 hisC Histidinol-phosphate aminotransferase 1139 281-345 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 000224131 e1fg7A1 002989494 Q87QL0_nD1 Q87QL0 HIS8_VIBPA VP1139 hisC Histidinol-phosphate aminotransferase 1139 6-280 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 000224132 e1fg7A2 002989495 Q87GF6_nD1 Q87GF6 Q87GF6_VIBPA VPA1360 4439 56-125 f a.7 193 193.1 193.1.1 alpha bundles CH domain-like Calponin-homology domain-like Calponin-homology domain-like 002576333 e6qjaA1 002989496 Q87GF6_nD2 Q87GF6 Q87GF6_VIBPA VPA1360 4439 151-175 f a.6 6061 6061.1 6061.1.1 alpha arrays Eukaryotic translation initiation factor 3 subunit 1 Eukaryotic translation initiation factor 3 subunit 1 Eukaryotic translation initiation factor 3 subunit 1 002696965 e7a1gz1 002989497 Q87NF3_nD1 Q87NF3 Q87NF3_VIBPA VP1915 1915 41-185 f a.11 307 307.1 307.1.1 a+b two layers Hedgehog/DD-peptidase Hedgehog/DD-peptidase Hedgehog/DD-peptidase 000005588 e1lbuA2 002989498 Q87Q44_nD1 Q87Q44 Q87Q44_VIBPA VP1306 Bifunctional adenosylcobalamin biosynthesis protein 1306 1-175 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102374 e1c9kB1 002989499 Q87JQ7_nD1 Q87JQ7 Q87JQ7_VIBPA VPA0191 Cystatin domain-containing protein 3270 31-130 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 002546601 e6sazB1 002989500 Q87GL5_nD1 Q87GL5 Q87GL5_VIBPA VPA1300 RibD_C domain-containing protein 4379 1-175 f a.17 7501 7501.1 7501.1.1 a/b three-layered sandwiches Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases 000137569 e3ky8A1 002989501 Q87G51_nD2 Q87G51 Q87G51_VIBPA VPA1466 4545 21-30,51-65,156-710 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001789763 e3v8xA1 002989502 Q87G51_nD1 Q87G51 Q87G51_VIBPA VPA1466 4545 31-155 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001760520 e3fhhA1 002989503 Q87JE1_nD1 Q87JE1 Q87JE1_VIBPA VPA0312 3391 41-50,121-135 f 002989504 Q87JE1_nD2 Q87JE1 Q87JE1_VIBPA VPA0312 3391 28-40,136-170 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 000370566 e3fvqB2 002989505 Q87SV6_nD1 Q87SV6 Q87SV6_VIBPA VP0316 Thiamine-binding periplasmic protein 316 16-325 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002989506 Q87K99_nD1 Q87K99 RSMG_VIBPA VP3079 rsmG Ribosomal RNA small subunit methyltransferase G 3078 6-210 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000009358 e1jsxA1 002989507 Q87PE3_nD1 Q87PE3 Q87PE3_VIBPA VP1568 DUF4115 domain-containing protein 1568 1-75 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002831711 e7eymA1 002989508 Q87PE3_nD2 Q87PE3 Q87PE3_VIBPA VP1568 DUF4115 domain-containing protein 1568 171-238 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001030922 e1tq5A3 002989509 Q87JZ0_nD1 Q87JZ0 Q87JZ0_VIBPA VPA0108 VOC domain-containing protein 3187 1-80 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001214560 e2rk0B3 002989510 Q87JZ0_nD2 Q87JZ0 Q87JZ0_VIBPA VPA0108 VOC domain-containing protein 3187 81-155 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160759 e3zi1A9 002989511 Q87QN9_nD1 Q87QN9 Q87QN9_VIBPA VP1110 ATPase 1110 21-235 f a.4 3308 3308.2 3308.2.1 beta duplicates or obligate multimers periplasmic lysozyme inhibitor of I-type lysozyme-like XAC2610 protein XAC2610 protein 001562389 e4qtqA1 002989512 Q87H45_nD1 Q87H45 Q87H45_VIBPA VPA1120 4199 1-235 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 002154258 e5wydC1 002989513 Q87NH0_nD1 Q87NH0 Q87NH0_VIBPA VP1898 Phosphatidylinositol kinase 1898 6-35,61-80 f a.11 216 216.1 216.1.1 a+b two layers UBC-like UBC-like UBC-like 001283727 e4nfaA1 002989514 Q87Q36_nD1 Q87Q36 Q87Q36_VIBPA VP1314 DUF1415 domain-containing protein 1314 16-190 f a.11 320 320.1 320.1.1 a+b two layers R3H domain-like R3H domain R3H domain 000005616 e1ug8A1 002989515 Q87I76_nD2 Q87I76 Q87I76_VIBPA VPA0730 VWFA domain-containing protein 3809 151-460 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 001396444 e2ww8A1 002989516 Q87I76_nD1 Q87I76 Q87I76_VIBPA VPA0730 VWFA domain-containing protein 3809 16-150 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 001260420 e1ihoB3 002989517 Q87GW6_nD3 Q87GW6 NAPA_VIBPA VPA1199 napA Periplasmic nitrate reductase 4278 96-180,411-700 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002072925 e5e7oC2 002989518 Q87GW6_nD4 Q87GW6 NAPA_VIBPA VPA1199 napA Periplasmic nitrate reductase 4278 701-829 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 000142874 e3ml1A1 002989519 Q87GW6_nD1 Q87GW6 NAPA_VIBPA VPA1199 napA Periplasmic nitrate reductase 4278 31-95 f a.11 1001 1001.1 1001.1.1 a+b two layers Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 002440718 e6cz8A4 002989520 Q87GW6_nD2 Q87GW6 NAPA_VIBPA VPA1199 napA Periplasmic nitrate reductase 4278 181-300,321-410 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001693028 e2nyaF3 002989521 Q87HU3_nD1 Q87HU3 Q87HU3_VIBPA VPA0863 PTS sugar transporter subunit IIA 3942 1-75 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 001139664 e4iapB2 002989522 Q87P31_nD1 Q87P31 Q87P31_VIBPA VP1687 1687 6-120 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 002171511 e5z38C1 002989523 Q87QQ4_nD1 Q87QQ4 Q87QQ4_VIBPA VP1095 Secreted protein 1095 21-50 f a.8 1030 1030.1 1030.1.1 alpha duplicates or obligate multimers Crispr-associated protein Csm2 Crispr-associated protein Csm2 Crispr-associated protein Csm2 001722632 e5an6A1 002989524 Q87RI3_nD1 Q87RI3 Q87RI3_VIBPA VP0810 811 1-75 f a.7 5045 5045.1 5045.1.1 alpha bundles F1F0 ATP synthase subunit A F1F0 ATP synthase subunit A F1F0 ATP synthase subunit A 001956068 e5lqyY1 002989525 Q87RI3_nD2 Q87RI3 Q87RI3_VIBPA VP0810 811 81-244 f a.6 106 106.1 106.1.1 alpha arrays Globin-like Globin-like Globin-like 002558796 e6kgxMB1 002989526 Q87RV4_nD1 Q87RV4 Q87RV4_VIBPA VP0672 NCS2 family permease 672 6-425 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 001684581 e5da0A1 002989527 Q87NV6_nD1 Q87NV6 Q87NV6_VIBPA VP1762 MmcQ/YjbR family DNA-binding protein 1762 6-119 f a.11 241 241.11 241.11.1 a+b two layers Type III secretory system chaperone-like YjbR-like YjbR-like 000006641 e2a1vA1 002989528 Q87I02_nD1 Q87I02 Q87I02_VIBPA VPA0804 3883 26-90 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000002785 e1y9qA2 002989529 Q87I02_nD2 Q87I02 Q87I02_VIBPA VPA0804 3883 16-25,91-205 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001307 e2bnmA1 002989530 Q87MT9_nD4 Q87MT9 Q87MT9_VIBPA VP2142 AAA domain-containing protein 2142 276-345 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002816307 e6z26B1 002989531 Q87MT9_nD3 Q87MT9 Q87MT9_VIBPA VP2142 AAA domain-containing protein 2142 216-225,256-275 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002647773 e6wg3B2 002989532 Q87MT9_nD5 Q87MT9 Q87MT9_VIBPA VP2142 AAA domain-containing protein 2142 371-710 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002543024 e6sfwP2 002989533 Q87MT9_nD2 Q87MT9 Q87MT9_VIBPA VP2142 AAA domain-containing protein 2142 106-195 f a.5 59 59.1 59.1.4 beta complex topology triple barrel triple barrel TFIID subunits TAF1-TAF7 001414925 e4rgwB1 002989534 Q87MT9_nD1 Q87MT9 Q87MT9_VIBPA VP2142 AAA domain-containing protein 2142 6-105 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002702889 e7d8jA1 002989535 Q87MT9_nD6 Q87MT9 Q87MT9_VIBPA VP2142 AAA domain-containing protein 2142 696-820 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001715703 e5c3cB2 002989536 Q79YV1_nD1 Q79YV1 Q79YV1_VIBPA VPA0264 Flagellar basal body rod protein FlgB 3343 6-120 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002734725 e7nvgQ21 002989537 Q87SJ2_nD4 Q87SJ2 Q87SJ2_VIBPA VP0431 parC DNA topoisomerase 4 subunit A 431 501-745 f a.4 5 5.2 5.2.1 beta duplicates or obligate multimers beta-propeller-like beta-pinwheel beta-pinwheel 001106546 e1zvuA4 002989538 Q87SJ2_nD3 Q87SJ2 Q87SJ2_VIBPA VP0431 parC DNA topoisomerase 4 subunit A 431 346-480 f a.7 4016 4016.1 4016.1.1 alpha bundles alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase 001174787 e1zvuA9 002989539 Q87SJ2_nD2 Q87SJ2 Q87SJ2_VIBPA VP0431 parC DNA topoisomerase 4 subunit A 431 166-345,481-490 f a.11 4014 4014.1 4014.1.1 a+b two layers a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase 001145848 e2xkjE3 002989540 Q87SJ2_nD1 Q87SJ2 Q87SJ2_VIBPA VP0431 parC DNA topoisomerase 4 subunit A 431 31-165 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002647756 e6waaH1 002989541 Q87QC1_nD2 Q87QC1 Q87QC1_VIBPA VP1229 1229 76-208 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000004083 e2fbqA2 002989542 Q87QC1_nD1 Q87QC1 Q87QC1_VIBPA VP1229 1229 6-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002521 e1t33A1 002989543 Q87KY2_nD1 Q87KY2 FRDC_VIBPA VP2842 frdC Fumarate reductase subunit C 2841 1-125 f a.7 5069 5069.1 5069.1.3 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits 000058237 e1kf6O1 002989544 Q87S31_nD2 Q87S31 Q87S31_VIBPA VP0593 Inositol-1-monophosphatase 593 141-265 f a.17 7587 7587.1 7587.1.1 a/b three-layered sandwiches Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases 002472971 e6ib8B1 002989545 Q87S31_nD1 Q87S31 Q87S31_VIBPA VP0593 Inositol-1-monophosphatase 593 1-140 f a.11 4018 4018.1 4018.1.1 a+b two layers a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases 002472972 e6ib8B2 002989546 Q87H38_nD1 Q87H38 Q87H38_VIBPA VPA1127 4206 1-265 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000259906 e4jfcA1 002989547 Q87SX6_nD1 Q87SX6 CYSC_VIBPA VP0296 cysC Adenylyl-sulfate kinase 296 11-205 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000318159 e2ofxA1 002989548 Q87NB9_nD1 Q87NB9 Y1949_VIBPA VP1949 UPF0263 protein VP1949 1949 6-105 f a.11 243 243.2 243.2.1 a+b two layers Cystatin-like Putative dsDNA mimic Putative dsDNA mimic 000006413 e1nnvA1 002989549 Q87LK1_nD1 Q87LK1 GSHB_VIBPA VP2611 gshB Glutathione synthetase 2610 1-120 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 000009470 e1gsaA2 002989550 Q87LK1_nD2 Q87LK1 GSHB_VIBPA VP2611 gshB Glutathione synthetase 2610 121-310 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000007122 e1gsaA1 002989551 Q87IM2_nD1 Q87IM2 Q87IM2_VIBPA VPA0584 DNA-binding protein VF530 3663 6-78,111-120 f a.6 130 130.2 130.2.1 alpha arrays LEM/SAP HeH motif-like PF09905 (DUF2132) PF09905 (DUF2132) 000184691 e2jvwA1 002989552 Q87Q10_nD3 Q87Q10 Q87Q10_VIBPA VP1340 microbial collagenase 1340 611-690 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001066189 e4l9dA1 002989553 Q87Q10_nD4 Q87Q10 Q87Q10_VIBPA VP1340 microbial collagenase 1340 696-810 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 000401497 e3jqxC1 002989554 Q87Q10_nD1 Q87Q10 Q87Q10_VIBPA VP1340 microbial collagenase 1340 71-340 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001147777 e2y3uA1 002989555 Q87Q10_nD2 Q87Q10 Q87Q10_VIBPA VP1340 microbial collagenase 1340 341-605 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001168933 e4ar9A1 002989556 Q87L44_nD1 Q87L44 RS7_VIBPA VP2772 rpsG 30S ribosomal protein S7 2771 1-155 f a.6 167 167.1 167.1.1 alpha arrays Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7 002392779 e5zebg1 002989557 Q87J06_nD3 Q87J06 Q87J06_VIBPA VPA0449 3528 521-615 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001218715 e3se4A9 002989558 Q87J06_nD1 Q87J06 Q87J06_VIBPA VPA0449 3528 36-115 f a.11 304 304.7 304.7.1 a+b two layers Alpha-beta plaits Protease propeptides/inhibitors Protease propeptides/inhibitors 001125408 e3whiA2 002989559 Q87J06_nD2 Q87J06 Q87J06_VIBPA VPA0449 3528 116-520 f a.17 2499 2499.1 2499.1.1 a/b three-layered sandwiches Subtilisin-like Subtilisin-like Subtilisin-like 001087839 e3vv3A1 002989560 Q87QK8_nD1 Q87QK8 HIS5_VIBPA VP1141 hisH Imidazole glycerol phosphate synthase subunit HisH 1141 6-204 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000990506 e4gudB1 002989561 Q87FW1_nD1 Q87FW1 Q87FW1_VIBPA VPA1567 4646 6-805 f a.16 2500 2500.1 2500.1.1 a/b barrels Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel 002731094 e7kq3C2 002989562 Q87KJ6_nD2 Q87KJ6 XERC_VIBPA VP2981 xerC Tyrosine recombinase XerC 2980 121-245 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000002807 e1a0pA1 002989563 Q87KJ6_nD1 Q87KJ6 XERC_VIBPA VP2981 xerC Tyrosine recombinase XerC 2980 6-120 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002989564 Q87KJ6_nD3 Q87KJ6 XERC_VIBPA VP2981 xerC Tyrosine recombinase XerC 2980 246-300 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000299164 e2a3vD2 002989565 Q87G09_nD2 Q87G09 Q87G09_VIBPA VPA1510 kbl 2-amino-3-ketobutyrate coenzyme A ligase 4589 301-395 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001572721 e2jg2A1 002989566 Q87G09_nD1 Q87G09 Q87G09_VIBPA VPA1510 kbl 2-amino-3-ketobutyrate coenzyme A ligase 4589 31-300 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002727410 e7bxpB2 002989567 Q87PS0_nD2 Q87PS0 Q87PS0_VIBPA VP1431 1431 326-585 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001953135 e5mkkA1 002989568 Q87PS0_nD1 Q87PS0 Q87PS0_VIBPA VP1431 1431 6-320 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002797568 e7m33C2 002989569 Q87IK0_nD2 Q87IK0 Q87IK0_VIBPA VPA0606 3685 161-210 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002989570 Q87IK0_nD1 Q87IK0 Q87IK0_VIBPA VPA0606 3685 6-160 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001737458 e4zuaA1 002989571 Q87IK0_nD3 Q87IK0 Q87IK0_VIBPA VPA0606 3685 211-265 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002565056 e6p7rA3 002989572 Q87T36_nD2 Q87T36 Q87T36_VIBPA VP0234 234 281-390 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002093334 e5w70A1 002989573 Q87T36_nD1 Q87T36 Q87T36_VIBPA VP0234 234 6-295 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002747591 e7l7xBBB1 002989574 Q87QS8_nD3 Q87QS8 Q87QS8_VIBPA VP1071 Tyr recombinase domain-containing protein 1071 176-315 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000299163 e2a3vD1 002989575 Q87QS8_nD4 Q87QS8 Q87QS8_VIBPA VP1071 Tyr recombinase domain-containing protein 1071 316-360 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 001267988 e3mgvC4 002989576 Q87QS8_nD2 Q87QS8 Q87QS8_VIBPA VP1071 Tyr recombinase domain-containing protein 1071 86-175 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002989577 Q87QS8_nD1 Q87QS8 Q87QS8_VIBPA VP1071 Tyr recombinase domain-containing protein 1071 11-80 f a.11 252 252.2 252.2.1 a+b two layers DNA-binding domain GCC-box binding domain-like GCC-box binding domain-like 000136649 e3ju0A1 002989578 Q87TB5_nD1 Q87TB5 Q87TB5_VIBPA VP0155 histidine kinase 155 6-35,141-170 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989579 Q87TB5_nD2 Q87TB5 Q87TB5_VIBPA VP0155 histidine kinase 155 36-140 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002094170 e5xgaA1 002989580 Q87TB5_nD4 Q87TB5 Q87TB5_VIBPA VP0155 histidine kinase 155 281-430 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002137976 e6blkC1 002989581 Q87TB5_nD3 Q87TB5 Q87TB5_VIBPA VP0155 histidine kinase 155 171-280 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001934909 e5iujE2 002989582 Q87S68_nD1 Q87S68 Q87S68_VIBPA VP0556 556 1-100 f a.11 330 330.2 330.2.1 a+b two layers dsRBD-like Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue) 000153426 e4heiA1 002989583 Q87SW6_nD1 Q87SW6 MSRA_VIBPA VP0306 msrA Peptide methionine sulfoxide reductase MsrA 306 6-210 f a.11 304 304.3 304.3.2 a+b two layers Alpha-beta plaits HMA-related Peptide methionine sulfoxide reductase 000064430 e1ff3A1 002989584 Q87MF1_nD1 Q87MF1 RNH2_VIBPA VP2304 rnhB Ribonuclease HII 2304 16-205 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000407287 e3o3gA1 002989585 Q87T30_nD1 Q87T30 Q87T30_VIBPA VP0240 240 1-110 f a.11 315 315.1 315.1.1 a+b two layers Tautomerase/MIF-like Tautomerase/MIF Tautomerase/MIF 001833565 e4jcuC1 002989586 Q87MI3_nD1 Q87MI3 Q87MI3_VIBPA VP2272 bamC Outer membrane protein assembly factor BamC 2272 26-215 f a.11 331 331.22 331.22.1 a+b two layers TBP-like Outer membrane protein assembly factor BamC Outer membrane protein assembly factor BamC 001790181 e5d0qC1 002989587 Q87MI3_nD2 Q87MI3 Q87MI3_VIBPA VP2272 bamC Outer membrane protein assembly factor BamC 2272 221-339 f a.11 331 331.3 331.3.1 a+b two layers TBP-like Bet v1-like Bet v1-like 000427806 e3snsA1 002989588 Q87HN5_nD1 Q87HN5 Q87HN5_VIBPA VPA0928 DUF3069 domain-containing protein 4007 21-145 f a.6 524 524.2 524.2.1 alpha arrays Ypt/Rab-GAP domain of gyp1p-like Sama2622-like Sama2622-like 000003533 e2pv4A1 002989589 Q87L32_nD1 Q87L32 Q87L32_VIBPA VP2784 DNA-binding protein 2783 6-45 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002101967 e5xogM1 002989590 Q87FN6_nD1 Q87FN6 Q87FN6_VIBPA VPA1642 4721 36-165 f a.3 3597 3597.1 3597.1.1 beta sandwiches Starch specific carbohydrate-binding modules Starch specific carbohydrate-binding modules Starch specific carbohydrate-binding modules 002060448 e5x5sA1 002989591 Q87GN5_nD2 Q87GN5 Q87GN5_VIBPA VPA1280 Phosphoethanolamine--lipid A transferase 4359 216-545 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 001087284 e4kavA1 002989592 Q87GN5_nD1 Q87GN5 Q87GN5_VIBPA VPA1280 Phosphoethanolamine--lipid A transferase 4359 11-215 f a.7 1151 1151.1 1151.1.1 alpha bundles Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A 002036575 e5fgnA1 002989593 Q87MI7_nD1 Q87MI7 Q87MI7_VIBPA VP2268 2268 1-115 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011352 e1rw1A1 002989594 Q87JU9_nD1 Q87JU9 Q87JU9_VIBPA VPA0149 histidine kinase 3228 46-150 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000119451 e3kyzA1 002989595 Q87JU9_nD2 Q87JU9 Q87JU9_VIBPA VPA0149 histidine kinase 3228 16-45,151-180 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001392670 e4i5sB3 002989596 Q87JU9_nD5 Q87JU9 Q87JU9_VIBPA VPA0149 histidine kinase 3228 296-458 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001888779 e5idjA1 002989597 Q87JU9_nD3 Q87JU9 Q87JU9_VIBPA VPA0149 histidine kinase 3228 6-15,181-245 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002989598 Q87JU9_nD4 Q87JU9 Q87JU9_VIBPA VPA0149 histidine kinase 3228 246-295 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001888780 e5idjA2 002989599 Q87LB0_nD1 Q87LB0 Q87LB0_VIBPA VP2702 2701 161-355 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001148733 e2gw1B1 002989600 Q87PL2_nD1 Q87PL2 Q87PL2_VIBPA VP1490 DoxX family protein 1490 1-135 f a.19 174 174.1 174.1.1 few secondary structure elements Tetraspanin transmembrane domain Tetraspanin transmembrane domain Tetraspanin transmembrane domain 002715279 e6wvdA2 002989601 Q87FW0_nD2 Q87FW0 Q87FW0_VIBPA VPA1568 4647 1-40,111-309 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000350807 e3c8fA1 002989602 Q87FW0_nD1 Q87FW0 Q87FW0_VIBPA VPA1568 4647 41-110 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 001566301 e5c4iE2 002989603 Q87KM2_nD1 Q87KM2 Q87KM2_VIBPA VP2955 ftsE Cell division ATP-binding protein FtsE 2954 1-224 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002659832 e6z4wA1 002989604 Q87M82_nD1 Q87M82 Q87M82_VIBPA VP2376 Hydrolase 2376 6-200 f a.7 1151 1151.1 1151.1.1 alpha bundles Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A 002036575 e5fgnA1 002989605 Q87M82_nD2 Q87M82 Q87M82_VIBPA VP2376 Hydrolase 2376 236-605 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 002652982 e6vatE1 002989606 Q87LR8_nD1 Q87LR8 Q87LR8_VIBPA VP2543 Oxaloacetate decarboxylase beta chain 2543 21-375 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001422103 e4czbB1 002989607 Q87S33_nD1 Q87S33 Q87S33_VIBPA VP0591 secF Protein-export membrane protein SecF 591 41-125 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002075784 e5xanB1 002989608 Q87S33_nD2 Q87S33 Q87S33_VIBPA VP0591 secF Protein-export membrane protein SecF 591 1-40,126-310 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002989609 Q87Q60_nD2 Q87Q60 SYFA_VIBPA VP1290 pheS Phenylalanine--tRNA ligase alpha subunit 1290 101-325 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 002703015 e7db8A1 002989610 Q87Q60_nD1 Q87Q60 SYFA_VIBPA VP1290 pheS Phenylalanine--tRNA ligase alpha subunit 1290 1-100 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 002761506 e7k98D1 002989611 Q87GE2_nD1 Q87GE2 Q87GE2_VIBPA VPA1374 4453 6-35 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001160042 e1ojlD6 002989612 Q87P69_nD2 Q87P69 Q87P69_VIBPA VP1649 1649 86-235 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 001495276 e4p96A2 002989613 Q87P69_nD1 Q87P69 Q87P69_VIBPA VP1649 1649 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001612058 e3c7jA1 002989614 Q87LQ4_nD1 Q87LQ4 TRUD_VIBPA VP2557 truD tRNA pseudouridine synthase D 2557 6-160,311-340 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 001822778 e1sb7B2 002989615 Q87LQ4_nD2 Q87LQ4 TRUD_VIBPA VP2557 truD tRNA pseudouridine synthase D 2557 161-305 f a.11 1056 1056.1 1056.1.1 a+b two layers tRNA pseudouridine synthase TruD insertion domain tRNA pseudouridine synthase TruD insertion domain tRNA pseudouridine synthase TruD insertion domain 001820944 e1szwA3 002989616 Q87MD2_nD1 Q87MD2 Q87MD2_VIBPA VP2324 DUF3549 domain-containing protein 2324 6-340 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004625 e1lshA3 002989617 Q87N89_nD2 Q87N89 Q87N89_VIBPA VP1986 1-aminocyclopropane-1-carboxylate deaminase 1986 191-340 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002483469 e1rqxC1 002989618 Q87N89_nD1 Q87N89 Q87N89_VIBPA VP1986 1-aminocyclopropane-1-carboxylate deaminase 1986 31-190 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002484510 e5tciH1 002989619 Q87GG7_nD1 Q87GG7 Q87GG7_VIBPA VPA1349 4428 1-65 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 001558568 e4yxcB2 002989620 Q87PK3_nD1 Q87PK3 Q87PK3_VIBPA VP1499 1499 21-125,146-225 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002989621 Q87GZ9_nD1 Q87GZ9 CLCA_VIBPA VPA1166 clcA H(+)/Cl(-) exchange transporter ClcA 4245 31-460 f a.10 5053 5053.1 5053.1.1 alpha complex topology Clc chloride channel Clc chloride channel Clc chloride channel 000154589 e4eneA1 002989622 Q87FS0_nD3 Q87FS0 Q87FS0_VIBPA VPA1608 DUF1835 domain-containing protein 4687 286-420 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002391543 e5z7bB1 002989623 Q87FS0_nD2 Q87FS0 Q87FS0_VIBPA VPA1608 DUF1835 domain-containing protein 4687 86-145,166-285 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 002127621 e2xcrD4 002989624 Q87FS0_nD1 Q87FS0 Q87FS0_VIBPA VPA1608 DUF1835 domain-containing protein 4687 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000166120 e2rkhA1 002989625 Q87NU4_nD1 Q87NU4 Q87NU4_VIBPA VP1774 1774 6-285 f a.13 246 246.1 246.1.1 a+b four layers Carbon-nitrogen hydrolase-like Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 001822223 e5h8iC1 002989626 Q87R75_nD1 Q87R75 Q87R75_VIBPA VP0924 Rhomboid domain-containing protein 924 21-195 f a.7 5081 5081.1 5081.1.1 alpha bundles Rhomboid-like Rhomboid-like Rhomboid-like 001388870 e4qo2A1 002989627 Q87S97_nD2 Q87S97 Q87S97_VIBPA VP0527 527 91-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002989628 Q87S97_nD1 Q87S97 Q87S97_VIBPA VP0527 527 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002989629 Q87MM7_nD1 Q87MM7 Y2204_VIBPA VP2204 UPF0115 protein VP2204 2204 51-175 f a.11 328 328.7 328.7.1 a+b two layers IF3-like Smr domain Smr domain 001394869 e3qd7X1 002989630 Q87R27_nD2 Q87R27 Q87R27_VIBPA VP0971 971 1-125,271-420 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002989631 Q87R27_nD1 Q87R27 Q87R27_VIBPA VP0971 971 46-60,126-270 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002632341 e6pfzA1 002989632 Q87RG3_nD1 Q87RG3 Q87RG3_VIBPA VP0834 DUF4442 domain-containing protein 834 1-155 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000006087 e1sh8A1 002989633 Q87T80_nD1 Q87T80 COAD_VIBPA VP0190 coaD Phosphopantetheine adenylyltransferase 190 6-165 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001930876 e5h7xE1 002989634 Q87JL3_nD1 Q87JL3 Q87JL3_VIBPA VPA0236 3315 16-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002989635 Q87GC2_nD2 Q87GC2 Q87GC2_VIBPA VPA1395 4474 126-215 f a.6 101 101.1 101.1.6 alpha arrays HTH HTH TrpR 000170277 e3g1cA1 002989636 Q87GC2_nD5 Q87GC2 Q87GC2_VIBPA VPA1395 4474 536-560 f a.6 1073 1073.1 1073.1.1 alpha arrays Mitochondrial calcium uniporter (MCU) Mitochondrial calcium uniporter (MCU) Mitochondrial calcium uniporter (MCU) 002643129 e6xqnB1 002989637 Q87GC2_nD1 Q87GC2 Q87GC2_VIBPA VPA1395 4474 41-120 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002478 e2ezlA1 002989638 Q87GC2_nD3 Q87GC2 Q87GC2_VIBPA VPA1395 4474 216-430 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002784392 e7ouhB1 002989639 Q87GC2_nD4 Q87GC2 Q87GC2_VIBPA VPA1395 4474 431-535 f a.1 2 2.8 2.8.1 beta barrels OB-fold mu transposases-C mu transposases-C 000000435 e1bcoA1 002989640 Q87FE0_nD1 Q87FE0 Q87FE0_VIBPA VPA1739 4818 76-190 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002573688 e6e4dA3 002989641 Q87FE0_nD2 Q87FE0 Q87FE0_VIBPA VPA1739 4818 21-75,191-295,511-540 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001019356 e1jetA3 002989642 Q87FE0_nD3 Q87FE0 Q87FE0_VIBPA VPA1739 4818 296-510 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001558838 e4tozB1 002989643 Q87Q27_nD1 Q87Q27 Q87Q27_VIBPA VP1323 YgjP-like domain-containing protein 1323 11-165 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002514242 e6mdwA1 002989644 Q87MC1_nD1 Q87MC1 Y2335_VIBPA VP2335 UPF0253 protein VP2335 2335 6-65 f a.8 1191 1191.1 1191.1.1 alpha duplicates or obligate multimers UPF0253 protein YaeP UPF0253 protein YaeP UPF0253 protein YaeP 002323818 e5h1nA1 002989645 Q87II7_nD1 Q87II7 Q87II7_VIBPA VPA0619 3698 1-124 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001844200 e5e01B1 002989646 Q87KL2_nD1 Q87KL2 Q87KL2_VIBPA VP2965 RNA polymerase subunit sigma 2964 6-35 f a.21 5106 5106.1 5106.1.1 extended segments PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex 002551103 e6rqfG1 002989647 Q87KL2_nD2 Q87KL2 Q87KL2_VIBPA VP2965 RNA polymerase subunit sigma 2964 36-109 f a.1 2 2.24 2.24.1 beta barrels OB-fold probable receptor YhhM probable receptor YhhM 000420408 e3rd4B1 002989648 Q87Q05_nD2 Q87Q05 Q87Q05_VIBPA VP1345 1345 61-305 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002989649 Q87Q05_nD1 Q87Q05 Q87Q05_VIBPA VP1345 1345 31-60 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 001144181 e4o7gB1 002989650 Q87P11_nD1 Q87P11 Q87P11_VIBPA VP1707 DUF1980 domain-containing protein 1707 11-170 f a.10 3843 3843.1 3843.1.1 alpha complex topology NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K 002795586 e7f9oP1 002989651 Q87TN6_nD1 Q87TN6 Q87TN6_VIBPA VP0033 hemG Protoporphyrinogen IX dehydrogenase [quinone] 33 1-170 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 002438920 e6dqiA1 002989652 Q87KC1_nD1 Q87KC1 Q87KC1_VIBPA VP3056 3055 26-318 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 001558583 e4v3gA1 002989653 Q87L40_nD1 Q87L40 TUSD_VIBPA VP2776 tusD Sulfurtransferase TusD homolog 2775 6-130 f a.17 7545 7545.1 7545.1.1 a/b three-layered sandwiches YchN-like YchN-like YchN-like 000109613 e2d1pG1 002989654 Q87JQ9_nD2 Q87JQ9 Q87JQ9_VIBPA VPA0189 DctM domain-containing protein 3268 141-485,561-620 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001549199 e4r0cD1 002989655 Q87JQ9_nD1 Q87JQ9 Q87JQ9_VIBPA VPA0189 DctM domain-containing protein 3268 16-140 f a.10 3281 3281.1 3281.1.1 alpha complex topology Sodium/proton antiporter subunits-like Sodium/proton antiporter subunits-like NADH-quinone oxidoreductase subunit L (NuoL)-related 000993449 e3rkoC1 002989656 Q87JQ9_nD3 Q87JQ9 Q87JQ9_VIBPA VPA0189 DctM domain-containing protein 3268 486-560 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002989657 Q87JQ9_nD4 Q87JQ9 Q87JQ9_VIBPA VPA0189 DctM domain-containing protein 3268 626-705 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001447963 e4uxvA3 002989658 Q87RK0_nD3 Q87RK0 Q87RK0_VIBPA VP0794 Phosphoenolpyruvate-protein phosphotransferase 794 251-570 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001387070 e2kx9A1 002989659 Q87RK0_nD2 Q87RK0 Q87RK0_VIBPA VP0794 Phosphoenolpyruvate-protein phosphotransferase 794 1-20,146-250 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000204157 e2wqdA3 002989660 Q87RK0_nD1 Q87RK0 Q87RK0_VIBPA VP0794 Phosphoenolpyruvate-protein phosphotransferase 794 21-145 f a.6 607 607.1 607.1.1 alpha arrays Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 001387071 e2kx9A2 002989661 Q87G08_nD4 Q87G08 Q87G08_VIBPA VPA1511 4590 511-770 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 001180379 e3sy8A4 002989662 Q87G08_nD3 Q87G08 Q87G08_VIBPA VPA1511 4590 306-510 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141053 e5m3cA1 002989663 Q87G08_nD1 Q87G08 Q87G08_VIBPA VPA1511 4590 11-35,276-300 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002989664 Q87G08_nD2 Q87G08 Q87G08_VIBPA VPA1511 4590 36-275 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002989665 Q87JA5_nD1 Q87JA5 Q87JA5_VIBPA VPA0348 Arrestin_N domain-containing protein 3427 91-250 f a.12 881 881.1 881.1.1 a+b three layers Mog1p/PsbP-like Mog1p/PsbP-like Mog1p/PsbP-like 002410020 e6e8aA1 002989666 Q87RA7_nD1 Q87RA7 Q87RA7_VIBPA VP0890 890 6-245 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002323855 e5mlzA1 002989667 Q87RA7_nD2 Q87RA7 Q87RA7_VIBPA VP0890 890 251-260,286-565 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 001890022 e5knkB1 002989668 Q87IX4_nD1 Q87IX4 Q87IX4_VIBPA VPA0482 3561 21-450 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 000142239 e3pikA1 002989669 Q87M86_nD1 Q87M86 Q87M86_VIBPA VP2372 Exonuclease V subunit gamma 2372 1-55 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 000388141 e3lyhB1 002989670 O50286_nD2 O50286 DLDH_VIBPA VP2517 lpd Dihydrolipoyl dehydrogenase 2517 346-470 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 001270376 e4jdrB6 002989671 O50286_nD1 O50286 DLDH_VIBPA VP2517 lpd Dihydrolipoyl dehydrogenase 2517 6-345 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002989672 Q87NA6_nD1 Q87NA6 Q87NA6_VIBPA VP1969 Mu-like prophage protein gp16 1969 6-80 f a.7 4119 4119.1 4119.1.1 alpha bundles YfmB-like YfmB-like YfmB-like 000054731 e2eucB1 002989673 Q87SG6_nD1 Q87SG6 MURD_VIBPA VP0458 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase 458 6-95 f a.17 2003 2003.1 2003.1.8 a/b three-layered sandwiches Rossmann-like Rossmann-related MurCD/PglD N-terminal domain-like 000398872 e2wjpA1 002989674 Q87SG6_nD2 Q87SG6 MURD_VIBPA VP0458 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase 458 96-300 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000398873 e2wjpA2 002989675 Q87SG6_nD3 Q87SG6 MURD_VIBPA VP0458 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase 458 301-435 f a.17 7570 7570.1 7570.1.1 a/b three-layered sandwiches MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 000400718 e2x5oA3 002989676 Q87HS2_nD1 Q87HS2 Q87HS2_VIBPA VPA0884 3963 1-120 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001731475 e4yb8A2 002989677 Q87HS2_nD5 Q87HS2 Q87HS2_VIBPA VPA0884 3963 706-875 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001130252 e4my3B2 002989678 Q87HS2_nD2 Q87HS2 Q87HS2_VIBPA VPA0884 3963 121-280 f a.17 2007 2007.3 2007.3.1 a/b three-layered sandwiches Flavodoxin-like Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 001731476 e4yb8A3 002989679 Q87HS2_nD4 Q87HS2 Q87HS2_VIBPA VPA0884 3963 456-705 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000150924 e3ufxB1 002989680 Q87HS2_nD3 Q87HS2 Q87HS2_VIBPA VPA0884 3963 281-440 f a.17 2007 2007.3 2007.3.1 a/b three-layered sandwiches Flavodoxin-like Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 001731474 e4yb8A1 002989681 Q87K90_nD1 Q87K90 Q87K90_VIBPA VPA0008 3087 21-110,211-250 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989682 Q87K90_nD2 Q87K90 Q87K90_VIBPA VPA0008 3087 111-210 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989683 Q87H76_nD1 Q87H76 Q87H76_VIBPA VPA1089 adenosylhomocysteine nucleosidase 4168 11-250 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 001953474 e5ue1B1 002989684 Q87MN2_nD1 Q87MN2 Q87MN2_VIBPA VP2199 2199 1-175 f a.18 2498 2498.3 2498.3.1 mixed a+b and a/b Zincin-like Uncharacterized protein YfcM Uncharacterized protein YfcM 001503835 e4pdnA1 002989685 Q87QR7_nD2 Q87QR7 Q87QR7_VIBPA VP1082 DUF2313 domain-containing protein 1082 86-190 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001393623 e3kxaA1 002989686 Q87QR7_nD1 Q87QR7 Q87QR7_VIBPA VP1082 DUF2313 domain-containing protein 1082 11-50 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000141100 e2xsdC1 002989687 Q87PW1_nD1 Q87PW1 Q87PW1_VIBPA VP1389 Tricorn protease domain-containing protein 1389 36-370 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 002123569 e5wlcLO2 002989688 Q87ID2_nD2 Q87ID2 Q87ID2_VIBPA VPA0674 3753 141-270 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001682490 e2h3hA1 002989689 Q87ID2_nD1 Q87ID2 Q87ID2_VIBPA VPA0674 3753 31-140,271-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002062107 e3o1iD2 002989690 Q87SH4_nD2 Q87SH4 Q87SH4_VIBPA VP0449 lpoA Penicillin-binding protein activator LpoA 449 256-370,521-603 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002121138 e5k5tA3 002989691 Q87SH4_nD1 Q87SH4 Q87SH4_VIBPA VP0449 lpoA Penicillin-binding protein activator LpoA 449 11-250 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001310609 e2mhkA1 002989692 Q87SH4_nD3 Q87SH4 Q87SH4_VIBPA VP0449 lpoA Penicillin-binding protein activator LpoA 449 371-520 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002442129 e6n51B3 002989693 Q87I50_nD1 Q87I50 Q87I50_VIBPA VPA0756 3835 1-100 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002673050 e6wk9B1 002989694 Q87NP4_nD1 Q87NP4 Q87NP4_VIBPA VP1824 Stc1 domain-containing protein 1824 6-60 f a.4 4154 4154.1 4154.1.1 beta duplicates or obligate multimers E2F-DP heterodimerization region E2F-DP heterodimerization region E2F-DP heterodimerization region 000002284 e2azeB1 002989695 Q87NP4_nD2 Q87NP4 Q87NP4_VIBPA VP1824 Stc1 domain-containing protein 1824 46-130,201-210 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 002741121 e6zu5LW01 002989696 Q87NP4_nD3 Q87NP4 Q87NP4_VIBPA VP1824 Stc1 domain-containing protein 1824 131-200 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 002132896 e5w3vA1 002989697 Q87IP7_nD3 Q87IP7 Q87IP7_VIBPA VPA0559 ABC transporter permease 3638 1-45,261-345,366-410 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002774948 e7arlE1 002989698 Q87IP7_nD2 Q87IP7 Q87IP7_VIBPA VPA0559 ABC transporter permease 3638 96-215 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002989699 Q87IP7_nD1 Q87IP7 Q87IP7_VIBPA VPA0559 ABC transporter permease 3638 46-95,216-260 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002419887 e5ws4A2 002989700 Q87JL0_nD1 Q87JL0 Q87JL0_VIBPA VPA0239 3318 21-565 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701855 e7cadB1 002989701 Q87P93_nD1 Q87P93 Q87P93_VIBPA VP1625 Chromosome partitioning protein ParB 1625 6-115 f a.14 876 876.1 876.1.1 a+b complex topology ParB/Sulfiredoxin ParB/Sulfiredoxin ParB/Sulfiredoxin 002503123 e6nr6A2 002989702 Q87JJ8_nD2 Q87JJ8 Q87JJ8_VIBPA VPA0251 3330 86-165,261-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002989703 Q87JJ8_nD1 Q87JJ8 Q87JJ8_VIBPA VPA0251 3330 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002989704 Q87JJ8_nD3 Q87JJ8 Q87JJ8_VIBPA VPA0251 3330 166-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001520900 e2hxrB1 002989705 Q9X9J4_nD3 Q9X9J4 FLGI2_VIBPA VP0783 flgI2 Flagellar P-ring protein 2 783 251-285,321-363 f a.3 10 10.1 10.1.1 beta sandwiches jelly-roll Concanavalin A-like Concanavalin A-like lectins/glucanases 000989043 e4drvA1 002989706 Q9X9J4_nD2 Q9X9J4 FLGI2_VIBPA VP0783 flgI2 Flagellar P-ring protein 2 783 21-30,181-245 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002773997 e6tfxB2 002989707 Q9X9J4_nD1 Q9X9J4 FLGI2_VIBPA VP0783 flgI2 Flagellar P-ring protein 2 783 31-175 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001109572 e4inkA1 002989708 Q87HU4_nD1 Q87HU4 Q87HU4_VIBPA VPA0862 4HBT domain-containing protein 3941 1-140 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000006083 e1vh5A1 002989709 Q87FY1_nD2 Q87FY1 Q87FY1_VIBPA VPA1539 4618 201-315 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001086999 e4g4vA1 002989710 Q87FY1_nD1 Q87FY1 Q87FY1_VIBPA VPA1539 4618 51-195 f a.11 3659 3659.1 3659.1.1 a+b two layers MotY N-terminal domain MotY N-terminal domain MotY N-terminal domain 001002452 e2zf8A1 002989711 Q87S16_nD2 Q87S16 ISPG_VIBPA VP0608 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) 608 266-360 f a.12 296 296.1 296.1.1 a+b three layers Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 001515520 e4s23B2 002989712 Q87S16_nD1 Q87S16 ISPG_VIBPA VP0608 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) 608 6-265 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001180599 e3noyA3 002989713 Q87QL5_nD2 Q87QL5 Q87QL5_VIBPA VP1134 Na_H_antiporter domain-containing protein 1134 501-525 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002636570 e6vksA5 002989714 Q87QL5_nD1 Q87QL5 Q87QL5_VIBPA VP1134 Na_H_antiporter domain-containing protein 1134 11-500 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001549199 e4r0cD1 002989715 Q87SJ6_nD1 Q87SJ6 Q87SJ6_VIBPA VP0427 Dehydrogenase 427 16-135 f a.11 897 897.1 897.1.1 a+b two layers Acidic mitochondrial matrix protein p32-like Acidic mitochondrial matrix protein p32 Acidic mitochondrial matrix protein p32 000006601 e1p32A1 002989716 Q87FT3_nD1 Q87FT3 Q87FT3_VIBPA VPA1595 4674 1-430 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002066829 e5ugqA1 002989717 Q9X9J5_nD1 Q9X9J5 FLGH1_VIBPA VP0782 flgH1 Flagellar L-ring protein 1 782 102-115,171-235 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002525277 e6nnbA1 002989718 Q87QR9_nD1 Q87QR9 Q87QR9_VIBPA VP1080 DUF2075 domain-containing protein 1080 31-280 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001495165 e1w36B1 002989719 Q87QR9_nD2 Q87QR9 Q87QR9_VIBPA VP1080 DUF2075 domain-containing protein 1080 281-470 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001108542 e4c2tC2 002989720 Q87NH5_nD2 Q87NH5 SYN_VIBPA VP1893 asnS Asparagine--tRNA ligase 1893 116-465 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 002519671 e6pqhB2 002989721 Q87NH5_nD1 Q87NH5 SYN_VIBPA VP1893 asnS Asparagine--tRNA ligase 1893 1-110 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002519670 e6pqhB1 002989722 Q87ST1_nD1 Q87ST1 Q87ST1_VIBPA VP0341 DUF547 domain-containing protein 341 32-260 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 002067416 e5uwbA1 002989723 Q87PT2_nD2 Q87PT2 Q87PT2_VIBPA VP1419 Structural protein 1419 1-10,106-185 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002559857 e6a4cA1 002989724 Q87PT2_nD1 Q87PT2 Q87PT2_VIBPA VP1419 Structural protein 1419 16-105 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002526305 e6a4cA2 002989725 Q87K89_nD2 Q87K89 Q87K89_VIBPA VPA0009 histidine kinase 3088 11-30,146-170 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002989726 Q87K89_nD5 Q87K89 Q87K89_VIBPA VPA0009 histidine kinase 3088 311-480 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001481140 e4pl9A1 002989727 Q87K89_nD6 Q87K89 Q87K89_VIBPA VPA0009 histidine kinase 3088 491-630 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002599894 e6ontA1 002989728 Q87K89_nD1 Q87K89 Q87K89_VIBPA VPA0009 histidine kinase 3088 31-145 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001389170 e2mj6A1 002989729 Q87K89_nD3 Q87K89 Q87K89_VIBPA VPA0009 histidine kinase 3088 171-235 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002989730 Q87K89_nD4 Q87K89 Q87K89_VIBPA VPA0009 histidine kinase 3088 236-310 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001389315 e4mt8A1 002989731 Q87MV5_nD2 Q87MV5 Q87MV5_VIBPA VP2126 Chemotaxis protein 2126 241-315 f a.14 1042 1042.1 1042.1.1 a+b complex topology S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein 002725301 e6m39C1 002989732 Q87MV5_nD1 Q87MV5 Q87MV5_VIBPA VP2126 Chemotaxis protein 2126 36-235 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 001408167 e3k2sA2 002989733 Q87MV5_nD3 Q87MV5 Q87MV5_VIBPA VP2126 Chemotaxis protein 2126 331-370 f a.10 3793 3793.1 3793.1.1 alpha complex topology Potassium channel modulator KCNE1 Potassium channel modulator KCNE1 Potassium channel modulator KCNE1 001889975 e2ndjA1 002989734 Q87SJ1_nD3 Q87SJ1 Q87SJ1_VIBPA VP0432 432 251-350 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 002728018 e7co2A1 002989735 Q87SJ1_nD2 Q87SJ1 Q87SJ1_VIBPA VP0432 432 36-250 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000398505 e3lgiB1 002989736 Q87SJ1_nD1 Q87SJ1 Q87SJ1_VIBPA VP0432 432 1-25 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 002794204 e7eftB1 002989737 Q87FW3_nD1 Q87FW3 Q87FW3_VIBPA VPA1564 Epimerase domain-containing protein 4644 1-314 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002546345 e6h0nB1 002989738 Q87LW8_nD1 Q87LW8 Q87LW8_VIBPA VP2490 2490 6-535 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000058134 e2onkD1 002989739 Q87P98_nD1 Q87P98 Q87P98_VIBPA VP1620 1620 126-230 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989740 Q87P98_nD2 Q87P98 Q87P98_VIBPA VP1620 1620 31-125,231-340 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001562407 e4z9nB1 002989741 Q87LS4_nD1 Q87LS4 LUXS_VIBPA VP2537 luxS S-ribosylhomocysteine lyase 2537 6-170 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 001890239 e5e68B1 002989742 P59605_nD1 P59605 ASSY_VIBPA VP2757 argG Argininosuccinate synthase 2756 6-170 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002666577 e7k5zC1 002989743 P59605_nD2 P59605 ASSY_VIBPA VP2757 argG Argininosuccinate synthase 2756 171-400 f a.14 253 253.1 253.1.1 a+b complex topology Argininosuccinate synthetase-C Argininosuccinate synthetase-C Argininosuccinate synthetase-C 001389054 e4u7jB2 002989744 Q87LF9_nD1 Q87LF9 OTC_VIBPA VP2653 argF Ornithine carbamoyltransferase 2652 6-155 f a.17 2003 2003.1 2003.1.14 a/b three-layered sandwiches Rossmann-like Rossmann-related Aspartate/ornithine carbamoyltransferase 002618003 e3txxB2 002989745 Q87LF9_nD2 Q87LF9 OTC_VIBPA VP2653 argF Ornithine carbamoyltransferase 2652 156-334 f a.17 2003 2003.1 2003.1.14 a/b three-layered sandwiches Rossmann-like Rossmann-related Aspartate/ornithine carbamoyltransferase 000152831 e4h31A1 002989746 Q87S98_nD1 Q87S98 Q87S98_VIBPA VP0526 526 16-45,181-230 f a.7 3758 3758.1 3758.1.1 alpha bundles Bacterial hemolysins-like Bacterial hemolysins Bacterial hemolysins 001914078 e4phqC1 002989747 Q87S98_nD2 Q87S98 Q87S98_VIBPA VP0526 526 61-165,246-380 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002989748 Q87MG8_nD1 Q87MG8 Q87MG8_VIBPA VP2287 2287 1-260 f a.13 210 210.1 210.1.3 a+b four layers Ntn/PP2C Ntn Class II glutamine amidotransferases 000087505 e1te5B1 002989749 Q87RV2_nD1 Q87RV2 FRSA_VIBPA VP0674 frsA Esterase FrsA 674 11-415 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001107116 e4i4cA1 002989750 Q87GH0_nD1 Q87GH0 Q87GH0_VIBPA VPA1346 4425 18-289 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 002390261 e6be0A1 002989751 Q87SC4_nD1 Q87SC4 UNG_VIBPA VP0500 ung Uracil-DNA glycosylase 500 6-225 f a.17 7569 7569.1 7569.1.1 a/b three-layered sandwiches Uracil-DNA glycosylase-like Uracil-DNA glycosylase-like Uracil-DNA glycosylase-like 000110126 e1lqjC1 002989752 Q87TD0_nD1 Q87TD0 Q87TD0_VIBPA VP0140 Type II secretion system protein K 140 16-100,286-325 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000006681 e3ci0K3 002989753 Q87TD0_nD2 Q87TD0 Q87TD0_VIBPA VP0140 Type II secretion system protein K 140 101-215 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002966 e3ci0K2 002989754 Q87TD0_nD3 Q87TD0 Q87TD0_VIBPA VP0140 Type II secretion system protein K 140 216-285 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002965 e3ci0K1 002989755 Q87HV9_nD1 Q87HV9 Q87HV9_VIBPA VPA0847 Glycosyl transferase 3926 1-210 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000011040 e2okfA1 002989756 Q87P52_nD1 Q87P52 Q87P52_VIBPA VP1666 TyeA domain-containing protein 1666 6-94 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 000002412 e1xl3C1 002989757 Q87H23_nD1 Q87H23 Q87H23_VIBPA VPA1142 4221 1-118 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 000163703 e2dg6A1 002989758 Q87MN3_nD1 Q87MN3 Q87MN3_VIBPA VP2198 YfcL family protein 2198 1-85 f a.6 610 610.4 610.4.1 alpha arrays ERP29 C domain-like YqeY domain YqeY domain 000003248 e1ng6A1 002989759 Q87QM9_nD1 Q87QM9 Q87QM9_VIBPA VP1120 1120 1-235 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001842117 e5ig2B1 002989760 Q87SA0_nD1 Q87SA0 TYSY_VIBPA VP0524 thyA Thymidylate synthase 524 1-283 f a.11 266 266.1 266.1.1 a+b two layers Thymidylate synthase/dCMP hydroxymethylase Thymidylate synthase/dCMP hydroxymethylase Thymidylate synthase/dCMP hydroxymethylase 001900480 e2bbqB1 002989761 Q87LF5_nD1 Q87LF5 Q87LF5_VIBPA VP2657 1-acyl-sn-glycerol-3-phosphate acyltransferase 2656 1-240 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 002603310 e5kymA1 002989762 Q87QL9_nD2 Q87QL9 MNMA_VIBPA VP1130 mnmA tRNA-specific 2-thiouridylase MnmA 1130 211-290 f a.1 4 4.6 4.6.1 beta barrels SH3 PRC-barrel domain PRC-barrel domain 001002271 e2derA1 002989763 Q87QL9_nD1 Q87QL9 MNMA_VIBPA VP1130 mnmA tRNA-specific 2-thiouridylase MnmA 1130 1-205 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001250473 e2detA7 002989764 Q87QL9_nD3 Q87QL9 MNMA_VIBPA VP1130 mnmA tRNA-specific 2-thiouridylase MnmA 1130 291-370 f a.1 1 1.1 1.1.8 beta barrels cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain 001099073 e2derA3 002989765 Q87PV1_nD3 Q87PV1 Q87PV1_VIBPA VP1400 non-specific serine/threonine protein kinase 1400 401-455 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001676526 e4ui9Y1 002989766 Q87PV1_nD4 Q87PV1 Q87PV1_VIBPA VP1400 non-specific serine/threonine protein kinase 1400 456-505 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002989767 Q87PV1_nD2 Q87PV1 Q87PV1_VIBPA VP1400 non-specific serine/threonine protein kinase 1400 321-370 f a.6 108 108.1 108.1.1 alpha arrays EF-hand EF-hand-related EF-hand 001347746 e4mvfA2 002989768 Q87PV1_nD5 Q87PV1 Q87PV1_VIBPA VP1400 non-specific serine/threonine protein kinase 1400 511-555 f a.7 611 611.6 611.6.1 alpha bundles N-cbl like PT26-6P helical domain PT26-6P helical domain 000184964 e2wb7A3 002989769 Q87PV1_nD1 Q87PV1 Q87PV1_VIBPA VP1400 non-specific serine/threonine protein kinase 1400 21-320 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000334525 e2pywB1 002989770 Q87PV1_nD6 Q87PV1 Q87PV1_VIBPA VP1400 non-specific serine/threonine protein kinase 1400 556-685 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000167190 e2pl2A1 002989771 Q87SW7_nD1 Q87SW7 Q87SW7_VIBPA VP0305 DUF1107 domain-containing protein 305 1-65 f a.11 6041 6041.1 6041.1.1 a+b two layers DUF1107-like DUF1107-like DUF1107-like 000184678 e2jroA1 002989772 Q87S85_nD1 Q87S85 Q87S85_VIBPA VP0539 histidine kinase 539 1-200 f a.7 604 604.12 604.12.1 alpha bundles Spectrin repeat-like MIT domain MIT domain 001346420 e4mesB1 002989773 Q87S85_nD2 Q87S85 Q87S85_VIBPA VP0539 histidine kinase 539 206-370 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001119296 e4bwiA2 002989774 Q87S85_nD4 Q87S85 Q87S85_VIBPA VP0539 histidine kinase 539 416-555 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002989775 Q87S85_nD3 Q87S85 Q87S85_VIBPA VP0539 histidine kinase 539 376-415 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002756401 e7cchA2 002989776 Q87MX2_nD4 Q87MX2 Q87MX2_VIBPA VP2104 rnfC Ion-translocating oxidoreductase complex subunit C 2104 376-450 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 001414915 e4p6vA4 002989777 Q87MX2_nD3 Q87MX2 Q87MX2_VIBPA VP2104 rnfC Ion-translocating oxidoreductase complex subunit C 2104 296-370 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 002772062 e7nyrF3 002989778 Q87MX2_nD1 Q87MX2 Q87MX2_VIBPA VP2104 rnfC Ion-translocating oxidoreductase complex subunit C 2104 36-120 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001414912 e4p6vA1 002989779 Q87MX2_nD6 Q87MX2 Q87MX2_VIBPA VP2104 rnfC Ion-translocating oxidoreductase complex subunit C 2104 841-865 f a.14 3559 3559.1 3559.1.1 a+b complex topology Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 002755137 e7enav1 002989780 Q87MX2_nD5 Q87MX2 Q87MX2_VIBPA VP2104 rnfC Ion-translocating oxidoreductase complex subunit C 2104 451-495 f a.21 4991 4991.1 4991.1.1 extended segments Lag-3 N-terminal region Lag-3 N-terminal region Lag-3 N-terminal region 000004700 e2fo1D1 002989781 Q87MX2_nD2 Q87MX2 Q87MX2_VIBPA VP2104 rnfC Ion-translocating oxidoreductase complex subunit C 2104 6-35,126-295 f a.17 4335 4335.1 4335.1.1 a/b three-layered sandwiches Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like 002326675 e5xfaA4 002989782 Q87T24_nD1 Q87T24 ZAPB_VIBPA VP0246 zapB Cell division protein ZapB 246 6-55 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001715951 e5cj0B2 002989783 Q87PC2_nD2 Q87PC2 Q87PC2_VIBPA VP1595 uup ATP-binding protein Uup 1595 561-639 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002098457 e5xnsA1 002989784 Q87PC2_nD1 Q87PC2 Q87PC2_VIBPA VP1595 uup ATP-binding protein Uup 1595 1-540 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002814625 e7msmx1 002989785 Q87KF3_nD1 Q87KF3 Q87KF3_VIBPA VP3024 3023 1-60 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006205 e1zud21 002989786 Q87RQ4_nD1 Q87RQ4 RLMH_VIBPA VP0723 rlmH Ribosomal RNA large subunit methyltransferase H 723 1-150 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 000113935 e1ns5B1 002989787 Q87TM5_nD1 Q87TM5 Q87TM5_VIBPA VP0044 HAD family hydrolase 44 1-240 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000169819 e2w4mA1 002989788 Q87SW9_nD1 Q87SW9 Q87SW9_VIBPA VP0303 DUF2607 domain-containing protein 303 11-60 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001934909 e5iujE2 002989789 Q87KR5_nD1 Q87KR5 Q87KR5_VIBPA VP2911 2910 1-55,76-90 f a.6 101 101.17 101.17.1 alpha arrays HTH IHF-like DNA-binding proteins IHF-like DNA-binding proteins 000047363 e1huuB1 002989790 Q9ZBA2_nD2 Q9ZBA2 FLAE_VIBPA VP0791 flaE Polar flagellin E 791 171-265 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002559772 e6iwyA3 002989791 Q9ZBA2_nD1 Q9ZBA2 FLAE_VIBPA VP0791 flaE Polar flagellin E 791 11-170,271-360 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002989792 Q87J87_nD1 Q87J87 Q87J87_VIBPA VPA0366 Orphan protein 3445 21-115 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001667116 e4kwaA1 002989793 Q87SI4_nD1 Q87SI4 RS9_VIBPA VP0439 rpsI 30S ribosomal protein S9 439 6-110 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001548960 e5aj4AI1 002989794 Q87HM6_nD1 Q87HM6 Q87HM6_VIBPA VPA0938 4016 11-165 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002516467 e6nwoD1 002989795 Q87HM6_nD2 Q87HM6 Q87HM6_VIBPA VPA0938 4016 171-225 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001101912 e2k9sA2 002989796 Q87HM6_nD3 Q87HM6 Q87HM6_VIBPA VPA0938 4016 226-285 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002989797 Q87GL4_nD1 Q87GL4 Q87GL4_VIBPA VPA1301 Pentapeptide repeat-containing protein 4380 41-160 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001872117 e5sv5A1 002989798 Q87GL4_nD2 Q87GL4 Q87GL4_VIBPA VPA1301 Pentapeptide repeat-containing protein 4380 201-340 f a.4 207 207.9 207.9.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Pentapeptide repeats Pentapeptide repeats 002042175 e5moyB1 002989799 Q87Q12_nD1 Q87Q12 Q87Q12_VIBPA VP1338 1338 6-275 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701855 e7cadB1 002989800 Q87M01_nD6 Q87M01 Q87M01_VIBPA VP2457 nusA Transcription termination/antitermination protein NusA 2457 421-490 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002951 e1y88A1 002989801 Q87M01_nD1 Q87M01 Q87M01_VIBPA VP2457 nusA Transcription termination/antitermination protein NusA 2457 1-130 f a.14 885 885.1 885.1.1 a+b complex topology Transcription factor NusA, N-terminal domain Transcription factor NusA, N-terminal domain Transcription factor NusA, N-terminal domain 000139854 e2kwpA1 002989802 Q87M01_nD2 Q87M01 Q87M01_VIBPA VP2457 nusA Transcription termination/antitermination protein NusA 2457 131-200 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001170595 e4mtnA12 002989803 Q87M01_nD5 Q87M01 Q87M01_VIBPA VP2457 nusA Transcription termination/antitermination protein NusA 2457 346-420 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001170597 e4mtnA14 002989804 Q87M01_nD3 Q87M01 Q87M01_VIBPA VP2457 nusA Transcription termination/antitermination protein NusA 2457 201-275 f a.11 327 327.11 327.11.1 a+b two layers Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II) 002055508 e5lm9A2 002989805 Q87M01_nD4 Q87M01 Q87M01_VIBPA VP2457 nusA Transcription termination/antitermination protein NusA 2457 276-345 f a.11 327 327.11 327.11.1 a+b two layers Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II) 002055497 e5lm7A5 002989806 Q87G74_nD1 Q87G74 Q87G74_VIBPA VPA1443 Membrane fusion protein (MFP) family protein 4522 106-300 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002137468 e5nenB1 002989807 Q87G74_nD2 Q87G74 Q87G74_VIBPA VPA1443 Membrane fusion protein (MFP) family protein 4522 71-105,301-335 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002989808 Q87G74_nD3 Q87G74 Q87G74_VIBPA VPA1443 Membrane fusion protein (MFP) family protein 4522 46-65,336-445 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002989809 Q87SB1_nD2 Q87SB1 SYK_VIBPA VP0513 lysS Lysine--tRNA ligase 513 161-500 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000007008 e1e1oA2 002989810 Q87SB1_nD1 Q87SB1 SYK_VIBPA VP0513 lysS Lysine--tRNA ligase 513 6-150 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001244985 e4ex5B5 002989811 Q87NJ8_nD2 Q87NJ8 Y1870_VIBPA VP1870 UPF0283 membrane protein VP1870 1870 146-250,291-340 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000101690 e1tq6A1 002989812 Q87NJ8_nD1 Q87NJ8 Y1870_VIBPA VP1870 UPF0283 membrane protein VP1870 1870 66-125 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002810262 e7shnB2 002989813 Q87NJ8_nD3 Q87NJ8 Y1870_VIBPA VP1870 UPF0283 membrane protein VP1870 1870 251-280 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002404847 e5ochB2 002989814 Q87N26_nD1 Q87N26 KTHY_VIBPA VP2049 tmk Thymidylate kinase 2049 6-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009554 e4tmkA1 002989815 Q87QR8_nD2 Q87QR8 Q87QR8_VIBPA VP1081 Sigma-70 family RNA polymerase sigma factor 1081 181-260 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002505916 e6p18Q1 002989816 Q87QR8_nD1 Q87QR8 Q87QR8_VIBPA VP1081 Sigma-70 family RNA polymerase sigma factor 1081 21-30,51-180 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000004814 e1or7A2 002989817 Q87HJ9_nD1 Q87HJ9 Q87HJ9_VIBPA VPA0964 4993 1-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001918783 e5hevB2 002989818 Q87HJ9_nD2 Q87HJ9 Q87HJ9_VIBPA VPA0964 4993 141-200 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 000002760 e1a04A1 002989819 Q87K22_nD2 Q87K22 Q87K22_VIBPA VPA0076 3155 86-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000157119 e1yspA1 002989820 Q87K22_nD1 Q87K22 Q87K22_VIBPA VPA0076 3155 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002104055 e5whmA2 002989821 Q87H05_nD1 Q87H05 Q87H05_VIBPA VPA1160 nnrD Bifunctional NAD(P)H-hydrate repair enzyme 4239 6-225 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000422752 e3rssA2 002989822 Q87H05_nD2 Q87H05 Q87H05_VIBPA VPA1160 nnrD Bifunctional NAD(P)H-hydrate repair enzyme 4239 226-510 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000422751 e3rssA1 002989823 Q87H64_nD2 Q87H64 Q87H64_VIBPA VPA1101 4180 26-35,176-310 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000293657 e2c1vB2 002989824 Q87H64_nD1 Q87H64 Q87H64_VIBPA VPA1101 4180 36-175,311-320 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 002458403 e6fu3A1 002989825 Q87QK9_nD1 Q87QK9 HIS7_VIBPA VP1140 hisB Histidine biosynthesis bifunctional protein HisB 1140 6-165 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001245908 e2fpsB2 002989826 Q87QK9_nD2 Q87QK9 HIS7_VIBPA VP1140 hisB Histidine biosynthesis bifunctional protein HisB 1140 166-255 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002389821 e6fwhA2 002989827 Q87QK9_nD3 Q87QK9 HIS7_VIBPA VP1140 hisB Histidine biosynthesis bifunctional protein HisB 1140 256-355 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001888741 e5el9A2 002989828 Q87PG9_nD1 Q87PG9 TTCA_VIBPA VP1533 ttcA tRNA-cytidine(32) 2-sulfurtransferase 1533 6-263 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002501108 e5ztbC2 002989829 Q87PN7_nD1 Q87PN7 Q87PN7_VIBPA VP1464 1464 11-425 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002989830 Q87IH4_nD1 Q87IH4 Q87IH4_VIBPA VPA0632 Chalcone_isomerase domain-containing protein 3711 21-170 f a.12 881 881.1 881.1.1 a+b three layers Mog1p/PsbP-like Mog1p/PsbP-like Mog1p/PsbP-like 001286181 e3hlzB2 002989831 Q87KU5_nD2 Q87KU5 Q87KU5_VIBPA VP2880 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2879 76-150 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 000007556 e1bdoA1 002989832 Q87KU5_nD1 Q87KU5 Q87KU5_VIBPA VP2880 Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2879 1-30 f a.21 3079 3079.1 3079.1.1 extended segments RNA polymerase PB2 N-terminal fragment RNA polymerase PB2 N-terminal fragment RNA polymerase PB2 N-terminal fragment 001487496 e3a1gD1 002989833 Q87SV2_nD4 Q87SV2 Q87SV2_VIBPA VP0320 DctM domain-containing protein 320 391-415,481-495 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001509109 e4ebaC1 002989834 Q87SV2_nD3 Q87SV2 Q87SV2_VIBPA VP0320 DctM domain-containing protein 320 151-160,181-350,381-390,431-665 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001545111 e4r1iA1 002989835 Q87SV2_nD6 Q87SV2 Q87SV2_VIBPA VP0320 DctM domain-containing protein 320 726-825 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 000165076 e2eaqA1 002989836 Q87SV2_nD1 Q87SV2 Q87SV2_VIBPA VP0320 DctM domain-containing protein 320 21-150 f a.10 3281 3281.1 3281.1.1 alpha complex topology Sodium/proton antiporter subunits-like Sodium/proton antiporter subunits-like NADH-quinone oxidoreductase subunit L (NuoL)-related 002774486 e6u8yX1 002989837 Q87SV2_nD5 Q87SV2 Q87SV2_VIBPA VP0320 DctM domain-containing protein 320 671-725,826-855 f a.7 601 601.31 601.31.1 alpha bundles Four-helical up-and-down bundle Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 000184868 e2p7vA1 002989838 Q87SV2_nD2 Q87SV2 Q87SV2_VIBPA VP0320 DctM domain-containing protein 320 356-380 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001509109 e4ebaC1 002989839 Q87S86_nD3 Q87S86 Y538_VIBPA VP0538 Uncharacterized response regulatory protein VP0538 538 186-240 f a.1 4 4.8 4.8.1 beta barrels SH3 Chromo domain-like Chromo domain-like 001487666 e3d6wB2 002989840 Q87S86_nD1 Q87S86 Y538_VIBPA VP0538 Uncharacterized response regulatory protein VP0538 538 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000165360 e2qv0A1 002989841 Q87S86_nD2 Q87S86 Y538_VIBPA VP0538 Uncharacterized response regulatory protein VP0538 538 136-185 f a.1 4 4.8 4.8.1 beta barrels SH3 Chromo domain-like Chromo domain-like 001487665 e3d6wB1 002989842 Q87MT1_nD1 Q87MT1 Q87MT1_VIBPA VP2150 Putative NAD(P)H nitroreductase 2150 1-180 f a.11 304 304.103 304.103.1 a+b two layers Alpha-beta plaits FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 000334003 e3bm1B1 002989843 Q87KC2_nD1 Q87KC2 Q87KC2_VIBPA VP3055 PlsC domain-containing protein 3054 1-290 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 002603310 e5kymA1 002989844 Q87HK4_nD1 Q87HK4 Q87HK4_VIBPA VPA0959 4038 181-405 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002105089 e2ivfA6 002989845 Q87HK4_nD2 Q87HK4 Q87HK4_VIBPA VPA0959 4038 31-180,406-610 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001892277 e5t5iB2 002989846 Q87HK4_nD3 Q87HK4 Q87HK4_VIBPA VPA0959 4038 631-765 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002595014 e6sdvA1 002989847 Q87JR5_nD3 Q87JR5 Q87JR5_VIBPA VPA0183 3262 316-395 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001320172 e4qosA1 002989848 Q87JR5_nD4 Q87JR5 Q87JR5_VIBPA VPA0183 3262 396-445 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002627951 e6m10A1 002989849 Q87JR5_nD1 Q87JR5 Q87JR5_VIBPA VPA0183 3262 6-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002599894 e6ontA1 002989850 Q87JR5_nD2 Q87JR5 Q87JR5_VIBPA VPA0183 3262 136-315 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002989851 Q87SE5_nD1 Q87SE5 MTNN_VIBPA VP0479 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 479 1-230 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 001953474 e5ue1B1 002989852 Q87HB7_nD1 Q87HB7 Q87HB7_VIBPA VPA1048 4127 6-150 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006561 e1th8A1 002989853 Q79YZ3_nD3 Q79YZ3 Q79YZ3_VIBPA VP0772 Flagella basal body P-ring formation protein FlgA 772 191-248 f a.1 3174 3174.2 3174.2.1 beta barrels Ribosomal protein L14-like Barrel domain in flagellar protein FlgA Barrel domain in flagellar protein FlgA 001395522 e3teeA2 002989854 Q79YZ3_nD1 Q79YZ3 Q79YZ3_VIBPA VP0772 Flagella basal body P-ring formation protein FlgA 772 41-125 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000185264 e3frnA2 002989855 Q79YZ3_nD2 Q79YZ3 Q79YZ3_VIBPA VP0772 Flagella basal body P-ring formation protein FlgA 772 126-190 f a.1 70 70.3 70.3.1 beta barrels beta-clip SET domain-like SET domain-like 000185265 e3frnA3 002989856 Q87R82_nD5 Q87R82 Q87R82_VIBPA VP0915 histidine kinase 915 441-600 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001888779 e5idjA1 002989857 Q87R82_nD2 Q87R82 Q87R82_VIBPA VP0915 histidine kinase 915 31-55,181-285 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001613275 e3by9A2 002989858 Q87R82_nD1 Q87R82 Q87R82_VIBPA VP0915 histidine kinase 915 56-180 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002989859 Q87R82_nD4 Q87R82 Q87R82_VIBPA VP0915 histidine kinase 915 346-435 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002989860 Q87R82_nD3 Q87R82 Q87R82_VIBPA VP0915 histidine kinase 915 6-30,286-345 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002989861 Q87GC4_nD1 Q87GC4 Q87GC4_VIBPA VPA1393 Helicase C-terminal domain-containing protein 4472 1-145 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002816804 e7epuB2 002989862 Q87GC4_nD2 Q87GC4 Q87GC4_VIBPA VPA1393 Helicase C-terminal domain-containing protein 4472 146-360,411-420 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001725706 e4xjxA1 002989863 Q87K49_nD1 Q87K49 Q87K49_VIBPA VPA0049 YitT family protein 3128 6-190 f a.10 5049 5049.1 5049.1.3 alpha complex topology Ammonium transporter-related Ammonium transporter-related Na(+)-translocating NADH-quinone reductase subunit B 001447931 e4p6vB1 002989864 Q87FS5_nD1 Q87FS5 Q87FS5_VIBPA VPA1603 protein-tyrosine-phosphatase 4682 1-145 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 002703357 e7dhfC1 002989865 Q87NG2_nD1 Q87NG2 Q87NG2_VIBPA VP1906 1906 1-140 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002796734 e7kuaA1 002989866 Q87PI7_nD1 Q87PI7 Q87PI7_VIBPA VP1515 1515 61-330 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 000004236 e1kqfC1 002989867 O24755_nD1 O24755 FUR_VIBPA VP0833 fur Ferric uptake regulation protein 833 6-145 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000170028 e2w57A1 002989868 Q87MC8_nD1 Q87MC8 Y2328_VIBPA VP2328 UPF0178 protein VP2328 2328 1-145 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001718069 e3ot5B2 002989869 Q87R16_nD2 Q87R16 MSBA_VIBPA VP0982 msbA ATP-dependent lipid A-core flippase 982 326-580 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002404846 e5ochB1 002989870 Q87R16_nD1 Q87R16 MSBA_VIBPA VP0982 msbA ATP-dependent lipid A-core flippase 982 6-105,126-320 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002448377 e6a6mA2 002989871 Q87KZ6_nD1 Q87KZ6 Q87KZ6_VIBPA VP2828 EamA family transporter 2827 1-295 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002989872 Q87H00_nD1 Q87H00 Q87H00_VIBPA VPA1165 DUF3108 domain-containing protein 4244 26-190 f a.11 809 809.1 809.1.1 a+b two layers BLIP-like beta-lactamase-inhibitor protein, BLIP beta-lactamase-inhibitor protein, BLIP 002804778 e7rj5E1 002989873 Q87PM8_nD1 Q87PM8 Q87PM8_VIBPA VP1473 1473 6-228 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000398501 e3la6N1 002989874 Q87QY8_nD1 Q87QY8 RLUE_VIBPA VP1010 rluE Ribosomal large subunit pseudouridine synthase E 1010 51-238 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000316466 e2omlA1 002989875 Q87JF4_nD3 Q87JF4 Q87JF4_VIBPA VPA0299 3378 181-285 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002989876 Q87JF4_nD2 Q87JF4 Q87JF4_VIBPA VPA0299 3378 91-180,286-315 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002989877 Q87JF4_nD1 Q87JF4 Q87JF4_VIBPA VPA0299 3378 6-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002989878 Q87R86_nD1 Q87R86 Q87R86_VIBPA VP0911 TRAP transporter small permease protein 911 6-180 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000185683 e4djiA1 002989879 Q87G01_nD1 Q87G01 Q87G01_VIBPA VPA1519 Spondin domain-containing protein 4598 26-225 f a.3 11 11.2 11.2.1 beta sandwiches Immunoglobulin-like beta-sandwich C2 domain C2 domain 001839925 e3q13A1 002989880 Q87SF5_nD1 Q87SF5 DAPB_VIBPA VP0469 dapB 4-hydroxy-tetrahydrodipicolinate reductase 469 1-125,236-265 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002129414 e5tenC1 002989881 Q87SF5_nD2 Q87SF5 DAPB_VIBPA VP0469 dapB 4-hydroxy-tetrahydrodipicolinate reductase 469 126-235 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000006760 e1dihA1 002989882 Q87MT3_nD1 Q87MT3 Q87MT3_VIBPA VP2147 DUF1778 domain-containing protein 2148 6-65 f a.6 103 103.5 103.5.1 alpha arrays RuvA-C post-HMGL domain-like post-HMGL domain-like 001346828 e4ov4A2 002989883 Q87SE4_nD1 Q87SE4 Q87SE4_VIBPA VP0480 DUF1499 domain-containing protein 480 26-140 f a.11 331 331.9 331.9.1 a+b two layers TBP-like Subdomain of clathrin and coatomer appendage domain Subdomain of clathrin and coatomer appendage domain 000073564 e2iv9A2 002989884 Q87FZ7_nD1 Q87FZ7 Q87FZ7_VIBPA VPA1523 4602 1-65 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001214848 e3w0tB6 002989885 Q87FZ7_nD2 Q87FZ7 Q87FZ7_VIBPA VPA1523 4602 66-125 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160752 e3l7tA5 002989886 Q87JD9_nD1 Q87JD9 Q87JD9_VIBPA VPA0314 EamA domain-containing protein 3393 6-300 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002989887 Q87GG0_nD2 Q87GG0 Q87GG0_VIBPA VPA1356 Type III secretion protein 4435 136-200 f a.11 298 298.4 298.4.1 a+b two layers FwdE/GAPDH domain-like V-type ATPase subunit E V-type ATPase subunit E 002714781 e6wm2I2 002989888 Q87GG0_nD1 Q87GG0 Q87GG0_VIBPA VPA1356 Type III secretion protein 4435 36-135 f a.21 3464 3464.1 3464.1.1 extended segments Helical region in V-type proton ATPase subunit E Helical region in V-type proton ATPase subunit E Helical region in V-type proton ATPase subunit E 001578717 e3v6iY2 002989889 Q87LH4_nD3 Q87LH4 Q87LH4_VIBPA VP2638 2637 381-425 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001324916 e4ny2B1 002989890 Q87LH4_nD1 Q87LH4 Q87LH4_VIBPA VP2638 2637 26-335 f a.16 2002 2002.3 2002.3.1 a/b barrels TIM beta/alpha-barrel Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 001324917 e4ny2B2 002989891 Q87LH4_nD2 Q87LH4 Q87LH4_VIBPA VP2638 2637 336-380 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001324918 e4ny2B3 002989892 Q87TJ2_nD1 Q87TJ2 Q87TJ2_VIBPA VP0077 Ferritin 77 1-165 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 000142781 e3qz3A1 002989893 Q87HR3_nD2 Q87HR3 Q87HR3_VIBPA VPA0894 Heparin lyase 3973 281-365 f a.3 10 10.2 10.2.1 beta sandwiches jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins) 001832709 e5j7oF2 002989894 Q87HR3_nD1 Q87HR3 Q87HR3_VIBPA VPA0894 Heparin lyase 3973 46-60,96-280,366-380 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002099048 e5x7oB2 002989895 Q87GQ7_nD1 Q87GQ7 Q87GQ7_VIBPA VPA1258 DUF4347 domain-containing protein 4337 6-135 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001179119 e2x8aA4 002989896 Q87PC3_nD1 Q87PC3 Q87PC3_VIBPA VP1594 DUF3466 family protein 1594 26-565 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 000405706 e3o4hD1 002989897 Q87R69_nD1 Q87R69 MEND_VIBPA VP0929 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase 929 6-215 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 001840304 e5ej8E2 002989898 Q87R69_nD2 Q87R69 MEND_VIBPA VP0929 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase 929 216-375 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 002484113 e5ej8E3 002989899 Q87R69_nD3 Q87R69 MEND_VIBPA VP0929 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase 929 381-570 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 001840303 e5ej8E1 002989900 Q87K19_nD1 Q87K19 Q87K19_VIBPA VPA0079 3158 1-105 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001827721 e5fpzA1 002989901 Q87H40_nD3 Q87H40 Q87H40_VIBPA VPA1125 4204 231-385 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 001873079 e3djlA3 002989902 Q87H40_nD1 Q87H40 Q87H40_VIBPA VPA1125 4204 6-125 f a.6 4033 4033.1 4033.1.1 alpha arrays Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like 000379279 e3ii9A2 002989903 Q87H40_nD2 Q87H40 Q87H40_VIBPA VPA1125 4204 126-230 f a.5 4052 4052.1 4052.1.1 beta complex topology Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like 000163920 e2jifA1 002989904 Q87PL6_nD1 Q87PL6 Q87PL6_VIBPA VP1486 1486 1-130 f a.7 633 633.10 633.10.1 alpha bundles Bromodomain-like IVS-encoded protein-like IVS-encoded protein-like 000003660 e2gscA1 002989905 Q87PL6_nD6 Q87PL6 Q87PL6_VIBPA VP1486 1486 251-285,481-520 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 002773771 e6rw8A2 002989906 Q87PL6_nD5 Q87PL6 Q87PL6_VIBPA VP1486 1486 286-480 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002989907 Q87PL6_nD2 Q87PL6 Q87PL6_VIBPA VP1486 1486 131-170 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000004415 e1i4dA1 002989908 Q87PL6_nD4 Q87PL6 Q87PL6_VIBPA VP1486 1486 196-250,521-530 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002989909 Q87PL6_nD3 Q87PL6 Q87PL6_VIBPA VP1486 1486 171-195 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002989910 Q87LT0_nD1 Q87LT0 TRMD_VIBPA VP2531 trmD tRNA (guanine-N(1)-)-methyltransferase 2531 1-245 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 002141249 e5wyqA1 002989911 Q87KW0_nD4 Q87KW0 DSBD_VIBPA VP2865 dsbD Thiol:disulfide interchange protein DsbD 2864 486-613 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011270 e2fwhA1 002989912 Q87KW0_nD3 Q87KW0 DSBD_VIBPA VP2865 dsbD Thiol:disulfide interchange protein DsbD 2864 446-480 f a.9 109 109.10 109.10.1 alpha superhelices Repetitive alpha hairpins Translin Translin 001887905 e5jr9A1 002989913 Q87KW0_nD1 Q87KW0 DSBD_VIBPA VP2865 dsbD Thiol:disulfide interchange protein DsbD 2864 41-150 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001592 e1l6pA1 002989914 Q87KW0_nD2 Q87KW0 DSBD_VIBPA VP2865 dsbD Thiol:disulfide interchange protein DsbD 2864 211-310,331-445 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002989915 Q87LX6_nD1 Q87LX6 Q87LX6_VIBPA VP2482 2482 1-320 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002989916 Q87I87_nD1 Q87I87 Q87I87_VIBPA VPA0719 Flp family type IVb pilin 3798 6-35 f a.7 3086 3086.1 3086.1.1 alpha bundles Diacylglycerol kinase (DAGK) Diacylglycerol kinase (DAGK) Diacylglycerol kinase (DAGK) 000119198 e2kdcA1 002989917 Q87I87_nD2 Q87I87 Q87I87_VIBPA VPA0719 Flp family type IVb pilin 3798 51-75 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 001921566 e5lqxV1 002989918 Q87PE7_nD1 Q87PE7 Q87PE7_VIBPA VP1563 S-adenosylhomocysteine hydrolase 1563 6-105 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000317770 e2ox6C1 002989919 Q87MW4_nD1 Q87MW4 Q87MW4_VIBPA VP2117 Glutaredoxin 2117 6-105 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000139610 e3ipzA1 002989920 Q87RT1_nD1 Q87RT1 Q87RT1_VIBPA VP0696 Endonuclease 696 21-245 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 000372312 e3ismB1 002989921 Q87MU6_nD3 Q87MU6 Q87MU6_VIBPA VP2135 2135 316-515 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 000138863 e3m3hA1 002989922 Q87MU6_nD4 Q87MU6 Q87MU6_VIBPA VP2135 2135 536-720 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002491370 e6h02A3 002989923 Q87MU6_nD2 Q87MU6 Q87MU6_VIBPA VP2135 2135 111-310 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 000138863 e3m3hA1 002989924 Q87MU6_nD1 Q87MU6 Q87MU6_VIBPA VP2135 2135 1-110 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 000011463 e1th8B1 002989925 Q87T59_nD2 Q87T59 Q87T59_VIBPA VP0211 3-deoxy-D-manno-octulosonic acid transferase 211 211-410 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001283813 e4bfcA1 002989926 Q87T59_nD1 Q87T59 Q87T59_VIBPA VP0211 3-deoxy-D-manno-octulosonic acid transferase 211 1-210,411-420 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002325862 e3l7iB2 002989927 Q87IW6_nD3 Q87IW6 Q87IW6_VIBPA VPA0490 3569 21-30,226-315 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145751 e3lnnA2 002989928 Q87IW6_nD1 Q87IW6 Q87IW6_VIBPA VPA0490 3569 31-65,196-225 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002989929 Q87IW6_nD2 Q87IW6 Q87IW6_VIBPA VPA0490 3569 66-195 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002989930 Q87GQ2_nD4 Q87GQ2 Q87GQ2_VIBPA VPA1263 LysM domain-containing protein 4342 581-740 f a.5 57 57.1 57.1.1 beta complex topology Cloacin translocation domain Cloacin translocation domain Cloacin translocation domain 000388655 e3mfbC1 002989931 Q87GQ2_nD3 Q87GQ2 Q87GQ2_VIBPA VPA1263 LysM domain-containing protein 4342 366-415 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 000975119 e4a1kA2 002989932 Q87GQ2_nD5 Q87GQ2 Q87GQ2_VIBPA VPA1263 LysM domain-containing protein 4342 741-865 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 001558740 e4qkoD1 002989933 Q87GQ2_nD2 Q87GQ2 Q87GQ2_VIBPA VPA1263 LysM domain-containing protein 4342 136-345,431-475 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000001845 e2j73A1 002989934 Q87GQ2_nD1 Q87GQ2 Q87GQ2_VIBPA VPA1263 LysM domain-containing protein 4342 1-15,41-100 f 002989935 Q87JC6_nD5 Q87JC6 Q87JC6_VIBPA VPA0328 Elongation factor G 3406 581-674 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 001759018 e1darA5 002989936 Q87JC6_nD2 Q87JC6 Q87JC6_VIBPA VPA0328 Elongation factor G 3406 266-380 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000132 e2bv3A1 002989937 Q87JC6_nD1 Q87JC6 Q87JC6_VIBPA VPA0328 Elongation factor G 3406 1-265 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002770187 e7n2vEF1 002989938 Q87JC6_nD4 Q87JC6 Q87JC6_VIBPA VPA0328 Elongation factor G 3406 461-580 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001231459 e2xexB8 002989939 Q87JC6_nD3 Q87JC6 Q87JC6_VIBPA VPA0328 Elongation factor G 3406 381-460 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 002770190 e7n2vEF4 002989940 Q87Q69_nD1 Q87Q69 RL35_VIBPA VP1281 rpmI 50S ribosomal protein L35 1281 6-64 f a.11 4281 4281.1 4281.1.1 a+b two layers Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p 002826847 e7ryg21 002989941 Q87LF2_nD1 Q87LF2 Q87LF2_VIBPA VP2660 2659 6-100 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 002647826 e6xgzD1 002989942 Q87FZ2_nD1 Q87FZ2 Q87FZ2_VIBPA VPA1528 SRPBCC domain-containing protein 4607 1-145 f a.11 331 331.3 331.3.1 a+b two layers TBP-like Bet v1-like Bet v1-like 000143050 e2l9pA1 002989943 Q87J38_nD1 Q87J38 Q87J38_VIBPA VPA0415 AraC family transcriptional regulator 3494 6-130 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001294 e2arcA1 002989944 Q87J38_nD2 Q87J38 Q87J38_VIBPA VPA0415 AraC family transcriptional regulator 3494 136-200 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002792433 e7befG1 002989945 Q87TB8_nD2 Q87TB8 GREB_VIBPA VP0152 greB Transcription elongation factor GreB 152 76-160 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 002126108 e3bmbB1 002989946 Q87TB8_nD1 Q87TB8 GREB_VIBPA VP0152 greB Transcription elongation factor GreB 152 6-75 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 000166802 e2p4vA1 002989947 Q87R78_nD1 Q87R78 Q87R78_VIBPA VP0920 920 1-55,76-90 f a.6 101 101.17 101.17.1 alpha arrays HTH IHF-like DNA-binding proteins IHF-like DNA-binding proteins 002598076 e6o8qG1 002989948 Q79YX6_nD1 Q79YX6 Q79YX6_VIBPA VP1561 1561 16-55 f a.7 4095 4095.1 4095.1.1 alpha bundles ATP-dependent DNA ligase DNA-binding domain ATP-dependent DNA ligase DNA-binding domain ATP-dependent DNA ligase DNA-binding domain 001159091 e2cfmA8 002989949 Q79YX6_nD3 Q79YX6 Q79YX6_VIBPA VP1561 1561 121-165 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 000146671 e2l3nA1 002989950 Q79YX6_nD4 Q79YX6 Q79YX6_VIBPA VP1561 1561 176-215 f a.6 103 103.5 103.5.1 alpha arrays RuvA-C post-HMGL domain-like post-HMGL domain-like 000003105 e1nvmA1 002989951 Q79YX6_nD6 Q79YX6 Q79YX6_VIBPA VP1561 1561 286-325 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002565056 e6p7rA3 002989952 Q79YX6_nD2 Q79YX6 Q79YX6_VIBPA VP1561 1561 66-110 f a.6 101 101.1 101.1.14 alpha arrays HTH HTH DNA-binding domain of intron-encoded endonucleases 001030873 e1i3jA2 002989953 Q79YX6_nD5 Q79YX6 Q79YX6_VIBPA VP1561 1561 236-280 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001821888 e4mloA1 002989954 Q79YX6_nD8 Q79YX6 Q79YX6_VIBPA VP1561 1561 396-495 f a.12 821 821.1 821.1.1 a+b three layers GIY-YIG endonuclease GIY-YIG endonuclease GIY-YIG endonuclease 002528008 e6seiA1 002989955 Q79YX6_nD7 Q79YX6 Q79YX6_VIBPA VP1561 1561 331-375 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 000146671 e2l3nA1 002989956 Q87I24_nD1 Q87I24 Q87I24_VIBPA VPA0782 3861 26-90 f a.21 3579 3579.1 3579.1.1 extended segments NADH-quinone oxidoreductase subunit J NADH-quinone oxidoreductase subunit J NADH-quinone oxidoreductase subunit J 002755017 e7b93J1 002989957 Q87RE7_nD2 Q87RE7 Q87RE7_VIBPA VP0850 sucD Succinate--CoA ligase [ADP-forming] subunit alpha 850 126-290 f a.17 2007 2007.3 2007.3.1 a/b three-layered sandwiches Flavodoxin-like Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 002392692 e6melA2 002989958 Q87RE7_nD1 Q87RE7 Q87RE7_VIBPA VP0850 sucD Succinate--CoA ligase [ADP-forming] subunit alpha 850 6-125 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002647761 e6wcvA2 002989959 Q87KB2_nD2 Q87KB2 Q87KB2_VIBPA VP3065 3064 116-215 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002088215 e5kkwA1 002989960 Q87KB2_nD1 Q87KB2 Q87KB2_VIBPA VP3065 3064 21-115,216-255 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002989961 Q87TL6_nD3 Q87TL6 Q87TL6_VIBPA VP0053 Acid phosphatase 53 376-480 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002491447 e6dlhA4 002989962 Q87TL6_nD4 Q87TL6 Q87TL6_VIBPA VP0053 Acid phosphatase 53 491-545,576-630 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000027937 e1epaB1 002989963 Q87TL6_nD2 Q87TL6 Q87TL6_VIBPA VP0053 Acid phosphatase 53 261-375 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001298749 e4m00A4 002989964 Q87TL6_nD5 Q87TL6 Q87TL6_VIBPA VP0053 Acid phosphatase 53 631-765 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001724304 e5halA1 002989965 Q87TL6_nD1 Q87TL6 Q87TL6_VIBPA VP0053 Acid phosphatase 53 31-164,186-260 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001503615 e3e8vA1 002989966 Q87PV9_nD2 Q87PV9 Q87PV9_VIBPA VP1391 1391 381-465 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001314443 e4qhtC2 002989967 Q87PV9_nD1 Q87PV9 Q87PV9_VIBPA VP1391 1391 6-380 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001736738 e5exxA2 002989968 Q87PV9_nD3 Q87PV9 Q87PV9_VIBPA VP1391 1391 486-540 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002989969 Q87G93_nD1 Q87G93 Q87G93_VIBPA VPA1424 4503 1-150 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000145838 e3urrA1 002989970 Q87G93_nD2 Q87G93 Q87G93_VIBPA VPA1424 4503 161-260 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001700220 e5dleD1 002989971 Q87G93_nD3 Q87G93 Q87G93_VIBPA VPA1424 4503 271-630 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 000416667 e3qnqC1 002989972 Q87M70_nD1 Q87M70 Q87M70_VIBPA VP2388 Glycerol-3-phosphate dehydrogenase 2388 11-400 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001164831 e2r46A11 002989973 Q87M70_nD2 Q87M70 Q87M70_VIBPA VP2388 Glycerol-3-phosphate dehydrogenase 2388 401-510 f a.6 6058 6058.1 6058.1.1 alpha arrays C-terminal alpha domain in Alpha-Glycerophosphate Oxidase C-terminal alpha domain in Alpha-Glycerophosphate Oxidase C-terminal alpha domain in Alpha-Glycerophosphate Oxidase 001310578 e2qcuB2 002989974 Q87H27_nD2 Q87H27 Q87H27_VIBPA VPA1138 4217 156-335 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 001838822 e5doqA2 002989975 Q87H27_nD1 Q87H27 Q87H27_VIBPA VPA1138 4217 6-155 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002756446 e7d5iB1 002989976 Q87JQ1_nD1 Q87JQ1 Q87JQ1_VIBPA VPA0197 Fe2OG dioxygenase domain-containing protein 3276 11-200 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001361 e2iuwA1 002989977 Q87GD5_nD1 Q87GD5 Q87GD5_VIBPA VPA1382 4461 6-90 f a.7 3826 3826.1 3826.1.1 alpha bundles Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) 001684166 e4uigA1 002989978 Q87GD5_nD2 Q87GD5 Q87GD5_VIBPA VPA1382 4461 96-128 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002760995 e7ej1D3 002989979 Q87RV0_nD2 Q87RV0 PROB_VIBPA VP0676 proB Glutamate 5-kinase 676 266-375 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 001290972 e4q1tB2 002989980 Q87RV0_nD1 Q87RV0 PROB_VIBPA VP0676 proB Glutamate 5-kinase 676 11-265 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 001190282 e2j5tE5 002989981 Q87SQ6_nD1 Q87SQ6 Q87SQ6_VIBPA VP0366 Phosphoenolpyruvate-protein phosphotransferase 366 31-140 f a.6 607 607.1 607.1.1 alpha arrays Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 001387071 e2kx9A2 002989982 Q87SQ6_nD2 Q87SQ6 Q87SQ6_VIBPA VP0366 Phosphoenolpyruvate-protein phosphotransferase 366 6-30,146-250 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000204157 e2wqdA3 002989983 Q87SQ6_nD3 Q87SQ6 Q87SQ6_VIBPA VP0366 Phosphoenolpyruvate-protein phosphotransferase 366 251-535 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000192691 e2hroA1 002989984 Q87GV6_nD3 Q87GV6 Q87GV6_VIBPA VPA1209 secD Protein translocase subunit SecD 4288 211-285,426-440 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002075785 e5xanB2 002989985 Q87GV6_nD4 Q87GV6 Q87GV6_VIBPA VPA1209 secD Protein translocase subunit SecD 4288 286-425 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001760082 e3aqoD1 002989986 Q87GV6_nD2 Q87GV6 Q87GV6_VIBPA VPA1209 secD Protein translocase subunit SecD 4288 146-210 f a.11 3012 3012.1 3012.1.1 a+b two layers Cof C2 cap domain Cof C2 cap domain Cof C2 cap domain 002076426 e5ue7B2 002989987 Q87GV6_nD5 Q87GV6 Q87GV6_VIBPA VPA1209 secD Protein translocase subunit SecD 4288 16-40,441-605 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002075788 e5xanB5 002989988 Q87GV6_nD1 Q87GV6 Q87GV6_VIBPA VPA1209 secD Protein translocase subunit SecD 4288 41-130 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001298173 e4pwuC1 002989989 Q87QG8_nD1 Q87QG8 Q87QG8_VIBPA VP1181 1181 26-309 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000112587 e1ex9A1 002989990 Q87J01_nD1 Q87J01 Q87J01_VIBPA VPA0454 3533 6-155 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 001298224 e4cybJ1 002989991 P40608_nD1 P40608 MOTX_VIBPA VP2811 motX Sodium-type polar flagellar protein MotX 2810 21-210 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002429103 e6dehA1 002989992 Q87RR0_nD1 Q87RR0 LIPB_VIBPA VP0717 lipB Octanoyltransferase 717 6-210 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000007028 e1w66A1 002989993 Q87S55_nD2 Q87S55 Q87S55_VIBPA VP0569 Phosphate regulon transcriptional regulatory protein PhoB 569 126-229 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002746 e1gxqA1 002989994 Q87S55_nD1 Q87S55 Q87S55_VIBPA VP0569 Phosphate regulon transcriptional regulatory protein PhoB 569 1-125 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002780795 e7lzaA1 002989995 Q87FN9_nD1 Q87FN9 Q87FN9_VIBPA VPA1639 4718 11-165 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001166434 e3ecqB13 002989996 Q87FN9_nD2 Q87FN9 Q87FN9_VIBPA VPA1639 4718 176-275 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001822840 e2xhhA1 002989997 Q87FN9_nD3 Q87FN9 Q87FN9_VIBPA VPA1639 4718 286-325,356-535 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 000089856 e1oupA1 002989998 Q87GQ4_nD3 Q87GQ4 Q87GQ4_VIBPA VPA1261 4340 421-470 f a.7 604 604.6 604.6.1 alpha bundles Spectrin repeat-like GAT-like domain GAT-like domain 000055163 e1yd8H1 002989999 Q87GQ4_nD1 Q87GQ4 Q87GQ4_VIBPA VPA1261 4340 126-300 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 002055394 e5jvlD1 002990000 Q87GQ4_nD2 Q87GQ4 Q87GQ4_VIBPA VPA1261 4340 6-125,301-420 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001546135 e2o8bB1 002990001 Q87KE0_nD2 Q87KE0 PURK_VIBPA VP3037 purK N5-carboxyaminoimidazole ribonucleotide synthase 3036 86-370 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000989875 e3aw8B1 002990002 Q87KE0_nD1 Q87KE0 PURK_VIBPA VP3037 purK N5-carboxyaminoimidazole ribonucleotide synthase 3036 1-85 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 000314592 e2dwcA2 002990003 Q87SC3_nD1 Q87SC3 Q87SC3_VIBPA VP0501 Hemerythrin domain-containing protein 501 6-180 f a.7 601 601.14 601.14.1 alpha bundles Four-helical up-and-down bundle Hemerythrin Hemerythrin 001173431 e3caxA5 002990004 Q87GA6_nD2 Q87GA6 Q87GA6_VIBPA VPA1411 4490 161-340 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717312 e1c50A2 002990005 Q87GA6_nD1 Q87GA6 Q87GA6_VIBPA VPA1411 4490 1-160 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002990006 Q87H65_nD1 Q87H65 Q87H65_VIBPA VPA1100 Phosphorelay protein LuxU 4179 1-250 f a.7 192 192.29 192.29.1 alpha bundles Long alpha-hairpin bMERB domain (bivalent Mical/EHBP Rab binding) bMERB domain (bivalent Mical/EHBP Rab binding) 002492086 e6egcA1 002990007 Q87H65_nD5 Q87H65 Q87H65_VIBPA VPA1100 Phosphorelay protein LuxU 4179 651-780 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002990008 Q87H65_nD2 Q87H65 Q87H65_VIBPA VPA1100 Phosphorelay protein LuxU 4179 251-335 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002990009 Q87H65_nD4 Q87H65 Q87H65_VIBPA VPA1100 Phosphorelay protein LuxU 4179 506-645 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001918783 e5hevB2 002990010 Q87H65_nD3 Q87H65 Q87H65_VIBPA VPA1100 Phosphorelay protein LuxU 4179 336-495 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002568309 e6qrjA2 002990011 Q87H37_nD3 Q87H37 Q87H37_VIBPA VPA1128 4207 346-470 f a.14 325 325.1 325.1.1 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like 002705811 e7kctB3 002990012 Q87H37_nD4 Q87H37 Q87H37_VIBPA VPA1128 4207 471-605 f a.11 3794 3794.1 3794.1.1 a+b two layers Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 001154948 e3n6rI5 002990013 Q87H37_nD2 Q87H37 Q87H37_VIBPA VPA1128 4207 6-15,126-345 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000422521 e2yl2B1 002990014 Q87H37_nD5 Q87H37 Q87H37_VIBPA VPA1128 4207 606-690 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001891869 e5ks8C3 002990015 Q87H37_nD1 Q87H37 Q87H37_VIBPA VPA1128 4207 16-125 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 001153568 e3va7A17 002990016 Q87Q04_nD1 Q87Q04 Q87Q04_VIBPA VP1346 1346 6-65 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001548147 e3j9pD2 002990017 Q87Q04_nD2 Q87Q04 Q87Q04_VIBPA VP1346 1346 66-300 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002772273 e7mbzA1 002990018 Q87NP9_nD1 Q87NP9 Q87NP9_VIBPA VP1819 TonB_C domain-containing protein 1819 61-145 f a.11 272 272.1 272.1.1 a+b two layers TolA/TonB C-terminal domain TolA/TonB C-terminal domain TolA/TonB C-terminal domain 000005946 e1u07A1 002990019 Q87RQ7_nD2 Q87RQ7 Q87RQ7_VIBPA VP0720 rlpA Endolytic peptidoglycan transglycosylase RlpA 720 191-260 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 002552601 e6i0nA1 002990020 Q87RQ7_nD1 Q87RQ7 Q87RQ7_VIBPA VP0720 rlpA Endolytic peptidoglycan transglycosylase RlpA 720 51-190 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 000991009 e4avrB1 002990021 Q87IP4_nD6 Q87IP4 Q87IP4_VIBPA VPA0562 3641 446-635 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002990022 Q87IP4_nD1 Q87IP4 Q87IP4_VIBPA VPA0562 3641 41-145,281-315 f a.7 601 601.1 601.1.2 alpha bundles Four-helical up-and-down bundle alpha-catenin-related I/LWEQ domain (Pfam 01608) 000170152 e3fyqA1 002990023 Q87IP4_nD2 Q87IP4 Q87IP4_VIBPA VPA0562 3641 6-40,316-350 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002599509 e6pwbFA1 002990024 Q87IP4_nD5 Q87IP4 Q87IP4_VIBPA VPA0562 3641 406-445,636-670 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 002773771 e6rw8A2 002990025 Q87IP4_nD3 Q87IP4 Q87IP4_VIBPA VPA0562 3641 151-275 f a.7 633 633.10 633.10.1 alpha bundles Bromodomain-like IVS-encoded protein-like IVS-encoded protein-like 000003660 e2gscA1 002990026 Q87IP4_nD4 Q87IP4 Q87IP4_VIBPA VPA0562 3641 351-405,671-680 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002708987 e6lgqC1 002990027 Q87MB5_nD4 Q87MB5 Q87MB5_VIBPA VP2340 2341 426-500 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001137997 e2fnaB1 002990028 Q87MB5_nD3 Q87MB5 Q87MB5_VIBPA VP2340 2341 366-420,501-525 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002095492 e5lstA3 002990029 Q87MB5_nD1 Q87MB5 Q87MB5_VIBPA VP2340 2341 6-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002791114 e7a8rA2 002990030 Q87MB5_nD5 Q87MB5 Q87MB5_VIBPA VP2340 2341 581-654 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001555874 e4q47A3 002990031 Q87MB5_nD2 Q87MB5 Q87MB5_VIBPA VP2340 2341 216-365,526-580 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001862387 e5lb3E2 002990032 Q87LI6_nD1 Q87LI6 Q87LI6_VIBPA VP2626 Adenine DNA glycosylase 2625 1-220 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 000003025 e1kg2A1 002990033 Q87LI6_nD2 Q87LI6 Q87LI6_VIBPA VP2626 Adenine DNA glycosylase 2625 226-355 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 002775608 e6uufA1 002990034 Q87L08_nD2 Q87L08 Q87L08_VIBPA VP2816 hflX GTPase HflX 2815 196-365 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001756844 e5ady61 002990035 Q87L08_nD1 Q87L08 Q87L08_VIBPA VP2816 hflX GTPase HflX 2815 6-190 f a.17 7566 7566.1 7566.1.1 a/b three-layered sandwiches HflX family GTPase N-terminal domain HflX family GTPase N-terminal domain HflX family GTPase N-terminal domain 001756845 e5ady62 002990036 Q87L08_nD3 Q87L08 Q87L08_VIBPA VP2816 hflX GTPase HflX 2815 366-429 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 000005301 e2cveA1 002990037 Q87JI8_nD1 Q87JI8 Q87JI8_VIBPA VPA0261 3340 6-135 f a.7 603 603.5 603.5.1 alpha bundles STAT-like FlgN-like FlgN-like 000003798 e2fupA1 002990038 Q87NW7_nD1 Q87NW7 METAS_VIBPA VP1751 metAS Homoserine O-succinyltransferase 1751 1-305 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000161186 e2h2wA1 002990039 Q87QZ6_nD1 Q87QZ6 Q87QZ6_VIBPA VP1002 Peptidase M60 domain-containing protein 1002 66-305 f a.17 7603 7603.1 7603.1.1 a/b three-layered sandwiches Immunomodulating metalloprotease IMPa N-terminal domain Immunomodulating metalloprotease IMPa N-terminal domain Immunomodulating metalloprotease IMPa N-terminal domain 001952645 e5kdwB2 002990040 Q87QZ6_nD2 Q87QZ6 Q87QZ6_VIBPA VP1002 Peptidase M60 domain-containing protein 1002 36-65,311-425 f a.6 1142 1142.1 1142.1.1 alpha arrays Immunomodulating metalloprotease IMPa helical domain Immunomodulating metalloprotease IMPa helical domain Immunomodulating metalloprotease IMPa helical domain 002704652 e7jtvA1 002990041 Q87QZ6_nD4 Q87QZ6 Q87QZ6_VIBPA VP1002 Peptidase M60 domain-containing protein 1002 551-905 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001952644 e5kdwB1 002990042 Q87QZ6_nD3 Q87QZ6 Q87QZ6_VIBPA VP1002 Peptidase M60 domain-containing protein 1002 426-550 f a.3 10 10.25 10.25.1 beta sandwiches jelly-roll Jelly-roll domain in peptidase M60 family Jelly-roll domain in peptidase M60 family 001952647 e5kdwB4 002990043 Q87HB4_nD2 Q87HB4 Q87HB4_VIBPA VPA1051 4130 81-204 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 001778160 e4kf9A2 002990044 Q87HB4_nD1 Q87HB4 Q87HB4_VIBPA VPA1051 4130 1-80 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001107928 e4n0vA2 002990045 Q87TP7_nD1 Q87TP7 SYGA_VIBPA VP0022 glyQ Glycine--tRNA ligase alpha subunit 22 6-300 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 001828639 e5f5wA1 002990046 Q87NF7_nD1 Q87NF7 Q87NF7_VIBPA VP1911 Extracytoplasmic solute receptor protein 1911 36-360 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001875090 e4x04B1 002990047 Q87SN5_nD3 Q87SN5 Q87SN5_VIBPA VP0387 387 321-583 f a.14 4333 4333.1 4333.1.1 a+b complex topology DNA methylase specificity domain DNA methylase specificity domain DNA methylase specificity domain 001170444 e2y7hA4 002990048 Q87SN5_nD2 Q87SN5 Q87SN5_VIBPA VP0387 387 291-340 f a.7 159 159.1 159.1.4 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases Type II deoxyuridine triphosphatase-related 001164775 e4dk2A2 002990049 Q87SN5_nD1 Q87SN5 Q87SN5_VIBPA VP0387 387 6-55,96-290 f a.14 4333 4333.1 4333.1.1 a+b complex topology DNA methylase specificity domain DNA methylase specificity domain DNA methylase specificity domain 001170444 e2y7hA4 002990050 Q87LX9_nD2 Q87LX9 Q87LX9_VIBPA VP2479 2479 31-80,166-275,516-560 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002772524 e7ebiA3 002990051 Q87LX9_nD1 Q87LX9 Q87LX9_VIBPA VP2479 2479 81-165 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002772523 e7ebiA2 002990052 Q87LX9_nD3 Q87LX9 Q87LX9_VIBPA VP2479 2479 276-515 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001515936 e1zu0A2 002990053 Q87LN7_nD2 Q87LN7 LEPA_VIBPA VP2574 lepA Elongation factor 4 2573 181-290 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145779 e2ywfA2 002990054 Q87LN7_nD5 Q87LN7 LEPA_VIBPA VP2574 lepA Elongation factor 4 2573 481-590 f a.11 3986 3986.1 3986.1.1 a+b two layers GTP-binding protein lepA C-terminal domain-like GTP-binding protein lepA C-terminal domain GTP-binding protein lepA C-terminal domain 002128167 e5j8bz6 002990055 Q87LN7_nD1 Q87LN7 LEPA_VIBPA VP2574 lepA Elongation factor 4 2573 1-180 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001710457 e3degC1 002990056 Q87LN7_nD3 Q87LN7 LEPA_VIBPA VP2574 lepA Elongation factor 4 2573 291-370 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 001143982 e2yweA3 002990057 Q87LN7_nD4 Q87LN7 LEPA_VIBPA VP2574 lepA Elongation factor 4 2573 371-480 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 002128130 e5imqB6 002990058 Q87HJ1_nD1 Q87HJ1 Q87HJ1_VIBPA VPA0972 4051 1-144 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001549319 e4xhmA1 002990059 Q87QW4_nD3 Q87QW4 MUKF_VIBPA VP1035 mukF Chromosome partition protein MukF 1035 336-445 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002765311 e7nz2D23 002990060 Q87QW4_nD2 Q87QW4 MUKF_VIBPA VP1035 mukF Chromosome partition protein MukF 1035 121-330 f a.7 603 603.6 603.6.1 alpha bundles STAT-like MukF C-terminal domain-like MukF C-terminal domain-like 002765309 e7nz2D21 002990061 Q87QW4_nD1 Q87QW4 MUKF_VIBPA VP1035 mukF Chromosome partition protein MukF 1035 6-120 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002714 e1t98A1 002990062 Q87Q89_nD1 Q87Q89 Q87Q89_VIBPA VP1261 Transporter 1261 6-20,51-125 f a.11 328 328.7 328.7.1 a+b two layers IF3-like Smr domain Smr domain 000999519 e2zqeA1 002990063 Q87N67_nD1 Q87N67 Q87N67_VIBPA VP2008 2008 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002990064 Q87N67_nD2 Q87N67 Q87N67_VIBPA VP2008 2008 86-298 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002990065 Q87HZ2_nD1 Q87HZ2 Q87HZ2_VIBPA VPA0814 Autoinducer 2-binding periplasmic protein LuxP 3893 1-50 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002647093 e7ce1K1 002990066 Q87HZ2_nD2 Q87HZ2 Q87HZ2_VIBPA VPA0814 Autoinducer 2-binding periplasmic protein LuxP 3893 51-160,291-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001758818 e3o74B1 002990067 Q87HZ2_nD3 Q87HZ2 Q87HZ2_VIBPA VPA0814 Autoinducer 2-binding periplasmic protein LuxP 3893 161-290 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002793612 e7dobA1 002990068 Q87J44_nD1 Q87J44 Q87J44_VIBPA VPA0409 3488 6-54 f a.21 1084 1084.1 1084.1.1 extended segments Photosystem II reaction center W protein, chloroplastic Photosystem II reaction center W protein, chloroplastic Photosystem II reaction center W protein, chloroplastic 002545218 e6kacW1 002990069 Q87I03_nD1 Q87I03 GLYA2_VIBPA VPA0803 glyA2 Serine hydroxymethyltransferase 2 3882 11-430 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002580519 e6uxjC1 002990070 Q87J54_nD1 Q87J54 Q87J54_VIBPA VPA0399 3478 6-295 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001113647 e3aowA1 002990071 Q87J54_nD2 Q87J54 Q87J54_VIBPA VPA0399 3478 16-30,296-380 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002452166 e6hnuB2 002990072 Q87I29_nD2 Q87I29 Q87I29_VIBPA VPA0777 Usp domain-containing protein 3856 146-290 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009854 e1mjhA1 002990073 Q87I29_nD1 Q87I29 Q87I29_VIBPA VPA0777 Usp domain-containing protein 3856 1-145 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000407730 e3ab8A1 002990074 Q87P46_nD1 Q87P46 Q87P46_VIBPA VP1672 1672 11-215 f a.7 1180 1180.1 1180.1.1 alpha bundles Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain 002102658 e5h72B1 002990075 Q87K35_nD1 Q87K35 Q87K35_VIBPA VPA0063 DSBA domain-containing protein 3142 1-205 f a.6 3009 3009.1 3009.1.1 alpha arrays Insertion subdomain in DsbA-like Insertion subdomain in DsbA-like Insertion subdomain in DsbA-like 001906980 e5hfgA1 002990076 Q87H55_nD2 Q87H55 Q87H55_VIBPA VPA1110 4189 46-275 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701878 e7cagA1 002990077 Q87H55_nD1 Q87H55 Q87H55_VIBPA VPA1110 4189 11-45 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000150365 e4atmA1 002990078 Q87N57_nD3 Q87N57 Q87N57_VIBPA VP2018 2018 286-435 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002702525 e7d06K1 002990079 Q87N57_nD4 Q87N57 Q87N57_VIBPA VP2018 2018 436-465,491-535 f 002990080 Q87N57_nD1 Q87N57 Q87N57_VIBPA VP2018 2018 41-150 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002573988 e6kz4B2 002990081 Q87N57_nD2 Q87N57 Q87N57_VIBPA VP2018 2018 151-280 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002568839 e6kz3A2 002990082 Q87T67_nD1 Q87T67 Q87T67_VIBPA VP0203 203 1-239 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002507438 e6ifdB1 002990083 Q87RY4_nD1 Q87RY4 Q87RY4_VIBPA VP0642 642 16-160 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002757009 e7o0gA1 002990084 Q87NZ1_nD1 Q87NZ1 Q87NZ1_VIBPA VP1727 1727 56-340 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701878 e7cagA1 002990085 Q87MT6_nD1 Q87MT6 Q87MT6_VIBPA VP2145 2145 1-300 f a.17 2006 2006.1 2006.1.5 a/b three-layered sandwiches HAD domain-like HAD domain-related Arginase/deacetylase 000989880 e4a69B1 002990086 Q87NM0_nD1 Q87NM0 Q87NM0_VIBPA VP1848 Transmembrane protein 1848 16-220 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 000162589 e2d4uA1 002990087 Q87PJ2_nD4 Q87PJ2 Q87PJ2_VIBPA VP1510 1510 381-485 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005481 e1gteA2 002990088 Q87PJ2_nD3 Q87PJ2 Q87PJ2_VIBPA VP1510 1510 1-20,236-380 f a.17 2007 2007.22 2007.22.1 a/b three-layered sandwiches Flavodoxin-like Methyl-viologen reducing hydrogenase subunit D Methyl-viologen reducing hydrogenase subunit D 002323902 e5odcD1 002990089 Q87PJ2_nD1 Q87PJ2 Q87PJ2_VIBPA VP1510 1510 36-165 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270545 e3iwaA5 002990090 Q87PJ2_nD5 Q87PJ2 Q87PJ2_VIBPA VP1510 1510 486-545 f a.19 377 377.12 377.12.1 few secondary structure elements Glucocorticoid receptor-like RPL34 RPL34 002651712 e6th6Be1 002990091 Q87PJ2_nD2 Q87PJ2 Q87PJ2_VIBPA VP1510 1510 21-30,166-235 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002573473 e5odcA3 002990092 Q87K12_nD1 Q87K12 Q87K12_VIBPA VPA0086 3165 21-290 f a.3 10 10.1 10.1.1 beta sandwiches jelly-roll Concanavalin A-like Concanavalin A-like lectins/glucanases 000138893 e3mepA1 002990093 Q87K12_nD2 Q87K12 Q87K12_VIBPA VPA0086 3165 291-390 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002796408 e7kgzB3 002990094 Q87K12_nD3 Q87K12 Q87K12_VIBPA VPA0086 3165 381-740 f a.4 207 207.2 207.2.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Pectin lyase-like Pectin lyase-like 000007220 e1ru4A1 002990095 Q87ME3_nD3 Q87ME3 DXR_VIBPA VP2312 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2312 296-400 f a.9 166 166.1 166.1.1 alpha superhelices 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 002092751 e5krvA3 002990096 Q87ME3_nD1 Q87ME3 DXR_VIBPA VP2312 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2312 1-150,276-295 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002092759 e5kryB2 002990097 Q87ME3_nD2 Q87ME3 DXR_VIBPA VP2312 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2312 151-275 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 002806424 e7s04A1 002990098 Q87PX4_nD1 Q87PX4 Q87PX4_VIBPA VP1376 1376 1-150 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001710397 e3breB2 002990099 Q87PV7_nD2 Q87PV7 Q87PV7_VIBPA VP1394 1394 96-185 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 001117584 e2p5zX4 002990100 Q87PV7_nD5 Q87PV7 Q87PV7_VIBPA VP1394 1394 366-535 f a.1 2 2.7 2.7.1 beta barrels OB-fold Tail-associated lysozyme gp5-N Tail-associated lysozyme gp5-N 002468517 e6j0mA1 002990101 Q87PV7_nD6 Q87PV7 Q87PV7_VIBPA VP1394 1394 521-690 f a.4 79 79.1 79.1.1 beta duplicates or obligate multimers Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain 001731204 e4uhvB4 002990102 Q87PV7_nD1 Q87PV7 Q87PV7_VIBPA VP1394 1394 1-95 f a.1 1 1.1 1.1.13 beta barrels cradle loop barrel RIFT-related Phage tail proteins 001117585 e2p5zX1 002990103 Q87PV7_nD3 Q87PV7 Q87PV7_VIBPA VP1394 1394 226-285 f a.14 3071 3071.1 3071.1.1 a+b complex topology C-terminal insertion domain in phage tail proteins C-terminal insertion domain in phage tail proteins C-terminal insertion domain in phage tail proteins 002475125 e6rbkC4 002990104 Q87PV7_nD4 Q87PV7 Q87PV7_VIBPA VP1394 1394 186-225,286-360 f a.1 1 1.1 1.1.13 beta barrels cradle loop barrel RIFT-related Phage tail proteins 000119162 e3d37A2 002990105 Q87FZ8_nD3 Q87FZ8 Q87FZ8_VIBPA VPA1522 4601 166-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002990106 Q87FZ8_nD2 Q87FZ8 Q87FZ8_VIBPA VPA1522 4601 86-165,276-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002990107 Q87FZ8_nD1 Q87FZ8 Q87FZ8_VIBPA VPA1522 4601 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002990108 Q87LF3_nD1 Q87LF3 Q87LF3_VIBPA VP2659 2658 1-80 f a.11 327 327.2 327.2.1 a+b two layers Alpha-lytic protease prodomain-like BolA-like BolA-like 000430017 e3tr3B1 002990109 Q87G60_nD3 Q87G60 Q87G60_VIBPA VPA1457 4536 521-700 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002990110 Q87G60_nD1 Q87G60 Q87G60_VIBPA VPA1457 4536 1-335 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002396014 e6baoA2 002990111 Q87G60_nD2 Q87G60 Q87G60_VIBPA VPA1457 4536 336-505 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001558592 e3jabB1 002990112 Q87IY6_nD1 Q87IY6 Q87IY6_VIBPA VPA0470 3549 61-95,171-205 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001160273 e2v4dE8 002990113 Q87IY6_nD2 Q87IY6 Q87IY6_VIBPA VPA0470 3549 96-170 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002990114 Q87IY6_nD4 Q87IY6 Q87IY6_VIBPA VPA0470 3549 27-45,301-375 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002990115 Q87IY6_nD3 Q87IY6 Q87IY6_VIBPA VPA0470 3549 46-60,206-300 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002067198 e5ng5E1 002990116 Q87KA8_nD3 Q87KA8 ATPB_VIBPA VP3069 atpD ATP synthase subunit beta 3068 351-465 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 002556136 e6tdyE1 002990117 Q87KA8_nD1 Q87KA8 ATPB_VIBPA VP3069 atpD ATP synthase subunit beta 3068 1-75 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001886922 e5ik2L3 002990118 Q87KA8_nD2 Q87KA8 ATPB_VIBPA VP3069 atpD ATP synthase subunit beta 3068 76-350 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002591325 e6rd9X1 002990119 Q87SZ1_nD1 Q87SZ1 RS4_VIBPA VP0281 rpsD 30S ribosomal protein S4 281 1-205 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 001859964 e5j8aAD1 002990120 Q87L69_nD1 Q87L69 Q87L69_VIBPA VP2743 2742 11-170 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002128573 e5uj7E1 002990121 Q87L69_nD2 Q87L69 Q87L69_VIBPA VP2743 2742 171-220 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002390671 e6gazAg1 002990122 Q87L69_nD3 Q87L69 Q87L69_VIBPA VP2743 2742 416-500 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 000151264 e2lfvA1 002990123 Q87RL6_nD1 Q87RL6 SYE_VIBPA VP0762 gltX Glutamate--tRNA ligase 762 1-470 f a.6 101 101.8 101.8.1 alpha arrays HTH An anticodon-binding domain of class I aminoacyl-tRNA synthetases An anticodon-binding domain of class I aminoacyl-tRNA synthetases 002526279 e1j09A1 002990124 Q87FL5_nD5 Q87FL5 Q87FL5_VIBPA VPA1664 histidine kinase 4743 336-475 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001289570 e4bixB1 002990125 Q87FL5_nD2 Q87FL5 Q87FL5_VIBPA VPA1664 histidine kinase 4743 41-200 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000427907 e3te8B1 002990126 Q87FL5_nD1 Q87FL5 Q87FL5_VIBPA VPA1664 histidine kinase 4743 11-40,201-220 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002990127 Q87FL5_nD4 Q87FL5 Q87FL5_VIBPA VPA1664 histidine kinase 4743 286-330 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002833340 e7n0eB1 002990128 Q87FL5_nD3 Q87FL5 Q87FL5_VIBPA VPA1664 histidine kinase 4743 221-285 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990129 Q87QI4_nD1 Q87QI4 Q87QI4_VIBPA VP1165 inorganic diphosphatase 1165 1-185 f a.17 2006 2006.1 2006.1.2 a/b three-layered sandwiches HAD domain-like HAD domain-related DHH phosphoesterases 002607367 e6ll7C1 002990130 Q87QI4_nD2 Q87QI4 Q87QI4_VIBPA VP1165 inorganic diphosphatase 1165 191-300 f a.12 5104 5104.1 5104.1.1 a+b three layers C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases 000309565 e2iw4B1 002990131 Q87KC8_nD2 Q87KC8 Q87KC8_VIBPA VP3049 3048 151-265 f a.11 241 241.15 241.15.1 a+b two layers Type III secretory system chaperone-like FP (Fbxo7/PI31) dimerization domain FP (Fbxo7/PI31) dimerization domain 001720172 e5cl2A2 002990132 Q87KC8_nD1 Q87KC8 Q87KC8_VIBPA VP3049 3048 6-150 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001720171 e5cl2A1 002990133 Q87H15_nD1 Q87H15 Q87H15_VIBPA VPA1150 4229 46-350 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000154491 e4g1uA1 002990134 Q87JC7_nD1 Q87JC7 Q87JC7_VIBPA VPA0326 Transposase 3405 1-60 f a.11 305 305.1 305.1.1 a+b two layers DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase 002714984 e6wmpA1 002990135 Q03474_nD1 Q03474 LAFS_VIBPA VPA1555 lafS RNA polymerase sigma factor for flagellar operon 4634 6-100 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000004811 e1sigA1 002990136 Q03474_nD2 Q03474 LAFS_VIBPA VPA1555 lafS RNA polymerase sigma factor for flagellar operon 4634 101-165 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000045019 e1rp3E1 002990137 Q03474_nD3 Q03474 LAFS_VIBPA VPA1555 lafS RNA polymerase sigma factor for flagellar operon 4634 171-240 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000045048 e1rp3E2 002990138 Q87IL7_nD2 Q87IL7 Q87IL7_VIBPA VPA0589 3668 221-325 f a.11 884 884.1 884.1.1 a+b two layers Hypothetical protein YjiA, C-terminal domain Hypothetical protein YjiA, C-terminal domain Hypothetical protein YjiA, C-terminal domain 000006573 e1nijA1 002990139 Q87IL7_nD1 Q87IL7 Q87IL7_VIBPA VPA0589 3668 6-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000405097 e3p32A1 002990140 Q87KA1_nD2 Q87KA1 Q87KA1_VIBPA VP3077 Probable chromosome-partitioning protein ParB 3076 121-180 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670720 e6t1fC3 002990141 Q87KA1_nD1 Q87KA1 Q87KA1_VIBPA VP3077 Probable chromosome-partitioning protein ParB 3076 36-115 f a.14 876 876.1 876.1.1 a+b complex topology ParB/Sulfiredoxin ParB/Sulfiredoxin ParB/Sulfiredoxin 002710114 e7nfuB3 002990142 Q87KA1_nD4 Q87KA1 Q87KA1_VIBPA VP3077 Probable chromosome-partitioning protein ParB 3076 246-293 f a.15 3433 3433.1 3433.1.2 a+b duplicates or obligate multimers ParB dimerization domain ParB dimerization domain Chromosome-encoded ParB dimerization domain 002323883 e5nocB1 002990143 Q87KA1_nD3 Q87KA1 Q87KA1_VIBPA VP3077 Probable chromosome-partitioning protein ParB 3076 181-240 f a.6 3317 3317.1 3317.1.1 alpha arrays KorB C-terminal domain-like KorB C-terminal domain KorB C-terminal domain 001554304 e4umkC1 002990144 Q87IB3_nD1 Q87IB3 YEGS_VIBPA VPA0693 Probable lipid kinase YegS-like 3772 1-115 f a.17 2007 2007.1 2007.1.4 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain 001308395 e2jgrA2 002990145 Q87IB3_nD2 Q87IB3 YEGS_VIBPA VPA0693 Probable lipid kinase YegS-like 3772 116-295 f a.3 4004 4004.1 4004.1.1 beta sandwiches NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like 000259976 e3vzbA1 002990146 Q87I72_nD3 Q87I72 Q87I72_VIBPA VPA0734 3813 191-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002990147 Q87I72_nD1 Q87I72 Q87I72_VIBPA VPA0734 3813 16-110 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002990148 Q87I72_nD2 Q87I72 Q87I72_VIBPA VPA0734 3813 111-190,301-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002990149 Q87NT5_nD1 Q87NT5 Q87NT5_VIBPA VP1783 DUF1211 domain-containing protein 1783 21-165 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 001841264 e5d80b1 002990150 Q87FI5_nD3 Q87FI5 Q87FI5_VIBPA VPA1694 4773 146-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002990151 Q87FI5_nD1 Q87FI5 Q87FI5_VIBPA VPA1694 4773 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002990152 Q87FI5_nD2 Q87FI5 Q87FI5_VIBPA VPA1694 4773 91-160,281-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001522298 e2ql3K2 002990153 Q87N83_nD1 Q87N83 Q87N83_VIBPA VP1992 DUF1852 domain-containing protein 1992 6-320 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002724000 e7bx1A1 002990154 Q87KZ1_nD1 Q87KZ1 Q87KZ1_VIBPA VP2833 Serine acetyltransferase 2832 6-140 f a.6 1114 1114.1 1114.1.1 alpha arrays Serine acetyltransferase N-terminal domain Serine acetyltransferase N-terminal domain Serine acetyltransferase N-terminal domain 001901465 e4hzdA2 002990155 Q87KZ1_nD2 Q87KZ1 Q87KZ1_VIBPA VP2833 Serine acetyltransferase 2832 141-270 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 002708610 e6lcnC1 002990156 Q87HZ5_nD1 Q87HZ5 Q87HZ5_VIBPA VPA0811 3890 1-100 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001700220 e5dleD1 002990157 Q87HZ5_nD2 Q87HZ5 Q87HZ5_VIBPA VPA0811 3890 116-220 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001700220 e5dleD1 002990158 Q87HZ5_nD3 Q87HZ5 Q87HZ5_VIBPA VPA0811 3890 241-575 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002990159 Q87Q39_nD1 Q87Q39 BTUC_VIBPA VP1311 btuC Vitamin B12 import system permease protein BtuC 1311 1-325 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000004229 e1l7vA1 002990160 Q87GZ2_nD1 Q87GZ2 Q87GZ2_VIBPA VPA1173 Lipoprotein 4252 66-159 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001397034 e2zyrA1 002990161 Q87IP8_nD3 Q87IP8 Q87IP8_VIBPA VPA0558 FtsX domain-containing protein 3637 1-45,246-405 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002990162 Q87IP8_nD2 Q87IP8 Q87IP8_VIBPA VPA0558 FtsX domain-containing protein 3637 96-215 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002990163 Q87IP8_nD1 Q87IP8 Q87IP8_VIBPA VPA0558 FtsX domain-containing protein 3637 46-95,216-245 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 000146706 e3ftjA1 002990164 Q87M39_nD2 Q87M39 Q87M39_VIBPA VP2419 2419 96-145 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 002499658 e6mrrA1 002990165 Q87M39_nD1 Q87M39 Q87M39_VIBPA VP2419 2419 26-95 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001397 e1f1sA1 002990166 Q87M39_nD3 Q87M39 Q87M39_VIBPA VP2419 2419 176-455 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002713350 e6ve3C1 002990167 Q87LV2_nD1 Q87LV2 PANB_VIBPA VP2506 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 2506 1-264 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000092549 e1m3uD1 002990168 Q87GN6_nD1 Q87GN6 Q87GN6_VIBPA VPA1279 Diacylglycerol kinase 4358 1-118 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002105846 e5xa5A2 002990169 Q87JG4_nD1 Q87JG4 Q87JG4_VIBPA VPA0289 Lysine transporter LysE 3368 6-200 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002990170 Q87LK4_nD1 Q87LK4 SPRT_VIBPA VP2608 sprT Protein SprT 2607 6-110 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002514242 e6mdwA1 002990171 Q87LK4_nD2 Q87LK4 SPRT_VIBPA VP2608 sprT Protein SprT 2607 111-165 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001715231 e5fmfR2 002990172 Q87LC5_nD4 Q87LC5 Q87LC5_VIBPA VP2687 2686 281-400 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 000223708 e2bx2L3 002990173 Q87LC5_nD3 Q87LC5 Q87LC5_VIBPA VP2687 2686 1-35,211-280 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001933372 e5f6cA5 002990174 Q87LC5_nD1 Q87LC5 Q87LC5_VIBPA VP2687 2686 36-120 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001412633 e4oxpA2 002990175 Q87LC5_nD5 Q87LC5 Q87LC5_VIBPA VP2687 2686 406-489 f a.12 3617 3617.1 3617.1.1 a+b three layers Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E 000223710 e2bx2L5 002990176 Q87LC5_nD2 Q87LC5 Q87LC5_VIBPA VP2687 2686 121-210 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001412632 e4oxpA1 002990177 Q87RT7_nD1 Q87RT7 Q87RT7_VIBPA VP0690 690 146-305 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001348659 e3wpwA1 002990178 Q87IG6_nD1 Q87IG6 Q87IG6_VIBPA VPA0640 3719 26-190 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000140110 e3n9tA1 002990179 Q87NB7_nD1 Q87NB7 RLUB_VIBPA VP1951 rluB Ribosomal large subunit pseudouridine synthase B 1951 1-60 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 001118566 e4lgtA2 002990180 Q87NB7_nD2 Q87NB7 RLUB_VIBPA VP1951 rluB Ribosomal large subunit pseudouridine synthase B 1951 61-245 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 001118565 e4lgtA1 002990181 Q87LN1_nD2 Q87LN1 Q87LN1_VIBPA VP2580 L-aspartate oxidase 2579 241-350 f a.14 278 278.1 278.1.1 a+b complex topology Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 001176759 e1knrA4 002990182 Q87LN1_nD1 Q87LN1 Q87LN1_VIBPA VP2580 L-aspartate oxidase 2579 6-240,351-415 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001176758 e1knrA3 002990183 Q87LN1_nD3 Q87LN1 Q87LN1_VIBPA VP2580 L-aspartate oxidase 2579 421-535 f a.7 604 604.2 604.2.1 alpha bundles Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 001877655 e5kxjA1 002990184 Q87HJ2_nD2 Q87HJ2 FABH2_VIBPA VPA0971 fabH2 Beta-ketoacyl-[acyl-carrier-protein] synthase III 2 4050 176-364 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 001413060 e4x0oE2 002990185 Q87HJ2_nD1 Q87HJ2 FABH2_VIBPA VPA0971 fabH2 Beta-ketoacyl-[acyl-carrier-protein] synthase III 2 4050 6-175 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 001413059 e4x0oE1 002990186 Q87PF4_nD1 Q87PF4 Q87PF4_VIBPA VP1549 1548 1-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001510513 e3op9A1 002990187 Q87GX8_nD1 Q87GX8 Q87GX8_VIBPA VPA1187 4266 1-200 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000103523 e1swwA1 002990188 Q87RF0_nD4 Q87RF0 Q87RF0_VIBPA VP0847 oxoglutarate dehydrogenase (succinyl-transferring) 847 801-935 f a.17 7522 7522.1 7522.1.1 a/b three-layered sandwiches TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like 000185001 e2xt6A4 002990189 Q87RF0_nD3 Q87RF0 Q87RF0_VIBPA VP0847 oxoglutarate dehydrogenase (succinyl-transferring) 847 541-800 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 000422410 e2y0pC2 002990190 Q87RF0_nD1 Q87RF0 Q87RF0_VIBPA VP0847 oxoglutarate dehydrogenase (succinyl-transferring) 847 21-48 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 000184998 e2xt6A1 002990191 Q87RF0_nD2 Q87RF0 Q87RF0_VIBPA VP0847 oxoglutarate dehydrogenase (succinyl-transferring) 847 86-540 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002710969 e5rw0B1 002990192 Q87MK3_nD3 Q87MK3 Q87MK3_VIBPA VP2232 fliA RNA polymerase sigma factor FliA 2232 166-240 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002505916 e6p18Q1 002990193 Q87MK3_nD1 Q87MK3 Q87MK3_VIBPA VP2232 fliA RNA polymerase sigma factor FliA 2232 6-90 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000004811 e1sigA1 002990194 Q87MK3_nD2 Q87MK3 Q87MK3_VIBPA VP2232 fliA RNA polymerase sigma factor FliA 2232 91-165 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000045019 e1rp3E1 002990195 Q87HC6_nD4 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 651-765 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001413708 e2b1eA1 002990196 Q87HC6_nD7 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 1046-1155 f a.3 11 11.2 11.2.1 beta sandwiches Immunoglobulin-like beta-sandwich C2 domain C2 domain 001679996 e4y7mC1 002990197 Q87HC6_nD3 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 491-650 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002546343 e6ahoA1 002990198 Q87HC6_nD5 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 671-685,766-805,856-940 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 000138138 e3lomA1 002990199 Q87HC6_nD2 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 111-470 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002543678 e6mqbA1 002990200 Q87HC6_nD6 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 941-1045,1156-1170 f a.7 601 601.45 601.45.1 alpha bundles Four-helical up-and-down bundle Type VI secretion protein IcmF helical domain Type VI secretion protein IcmF helical domain 001679997 e4y7mC2 002990201 Q87HC6_nD1 Q87HC6 Q87HC6_VIBPA VPA1039 Type VI secretion system membrane subunit TssM 4118 1-80 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001390062 e2a2fX1 002990202 Q87SS1_nD1 Q87SS1 Q87SS1_VIBPA VP0351 351 6-175 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002088405 e5mstB3 002990203 Q87SS1_nD2 Q87SS1 Q87SS1_VIBPA VP0351 351 286-335 f a.7 604 604.3 604.3.1 alpha bundles Spectrin repeat-like BAG domain BAG domain 000055140 e1t7sB1 002990204 Q87SS1_nD3 Q87SS1 Q87SS1_VIBPA VP0351 351 176-285,336-460 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002990205 Q87SS1_nD4 Q87SS1 Q87SS1_VIBPA VP0351 351 461-595 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002088406 e5mstB4 002990206 Q87S00_nD2 Q87S00 Q87S00_VIBPA VP0624 624 96-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002990207 Q87S00_nD1 Q87S00 Q87S00_VIBPA VP0624 624 1-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002990208 Q87QP8_nD3 Q87QP8 Q87QP8_VIBPA VP1101 1101 166-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002990209 Q87QP8_nD1 Q87QP8 Q87QP8_VIBPA VP1101 1101 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002441957 e5z4zB1 002990210 Q87QP8_nD2 Q87QP8 Q87QP8_VIBPA VP1101 1101 86-165,266-324 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002990211 Q87N97_nD1 Q87N97 Q87N97_VIBPA VP1978 YwiC-like family protein 1978 1-130 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 000184932 e2vpwC1 002990212 Q87N97_nD2 Q87N97 Q87N97_VIBPA VP1978 YwiC-like family protein 1978 131-225 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 001096479 e4gehC2 002990213 Q87P32_nD2 Q87P32 VOPS_VIBPA VP1686 vopS Protein adenylyltransferase VopS 1686 216-385 f a.7 4040 4040.1 4040.1.1 alpha bundles Fic-like Fic-like Fic-like 000146219 e3letA2 002990214 Q87P32_nD1 Q87P32 VOPS_VIBPA VP1686 vopS Protein adenylyltransferase VopS 1686 86-215 f a.7 3229 3229.1 3229.1.1 alpha bundles N-terminal domain in adenosine monophosphate-protein transferase vopS N-terminal domain in adenosine monophosphate-protein transferase vopS N-terminal domain in adenosine monophosphate-protein transferase vopS 000389222 e3letB2 002990215 Q87G53_nD3 Q87G53 Q87G53_VIBPA VPA1464 DUF1566 domain-containing protein 4543 276-480 f a.14 209 209.1 209.1.1 a+b complex topology C-type lectin-like C-type lectin-like C-type lectin-like 000185718 e4epsA3 002990216 Q87G53_nD1 Q87G53 Q87G53_VIBPA VPA1464 DUF1566 domain-containing protein 4543 31-220 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002474087 e6hifg1 002990217 Q87G53_nD2 Q87G53 Q87G53_VIBPA VPA1464 DUF1566 domain-containing protein 4543 226-263 f 002990218 Q87I43_nD2 Q87I43 Q87I43_VIBPA VPA0763 3842 316-365 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001177461 e3a0rA6 002990219 Q87I43_nD1 Q87I43 Q87I43_VIBPA VPA0763 3842 11-310 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000078207 e1p0zE1 002990220 Q87I43_nD3 Q87I43 Q87I43_VIBPA VPA0763 3842 366-524 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001888779 e5idjA1 002990221 Q87PS5_nD1 Q87PS5 Q87PS5_VIBPA VP1426 Aromatic amino acid permease 1426 6-400 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002705927 e7kgvB1 002990222 Q87IF7_nD1 Q87IF7 Q87IF7_VIBPA VPA0649 DUF2214 domain-containing protein 3728 56-195 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000868122 e4il3B1 002990223 Q87QH6_nD1 Q87QH6 Q87QH6_VIBPA VP1173 1173 1-155 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 001818248 e4wheA1 002990224 Q87QH6_nD2 Q87QH6 Q87QH6_VIBPA VP1173 1173 161-220 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001503722 e4uy3A2 002990225 Q87LQ6_nD1 Q87LQ6 PIMT_VIBPA VP2555 pcm Protein-L-isoaspartate O-methyltransferase 2555 6-205 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000399619 e3lbfC1 002990226 Q87GN8_nD4 Q87GN8 Q87GN8_VIBPA VPA1277 histidine kinase 4356 156-220 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990227 Q87GN8_nD3 Q87GN8 Q87GN8_VIBPA VPA1277 histidine kinase 4356 126-155 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001389315 e4mt8A1 002990228 Q87GN8_nD6 Q87GN8 Q87GN8_VIBPA VPA1277 histidine kinase 4356 276-428 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001289570 e4bixB1 002990229 Q87GN8_nD1 Q87GN8 Q87GN8_VIBPA VPA1277 histidine kinase 4356 1-30 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002811986 e7dmfA1 002990230 Q87GN8_nD5 Q87GN8 Q87GN8_VIBPA VPA1277 histidine kinase 4356 221-275 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002708987 e6lgqC1 002990231 Q87GN8_nD2 Q87GN8 Q87GN8_VIBPA VPA1277 histidine kinase 4356 31-125 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002075065 e5b82A1 002990232 Q87SS3_nD1 Q87SS3 Q87SS3_VIBPA VP0349 Glycosyltransferase 349 1-340 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717475 e1f0kB1 002990233 Q87H75_nD1 Q87H75 Q87H75_VIBPA VPA1090 4Fe-4S ferredoxin-type domain-containing protein 4169 1-39 f a.19 374 374.1 374.1.1 few secondary structure elements HIPIP (high potential iron protein) HIPIP (high potential iron protein) HIPIP (high potential iron protein) 000146830 e2y8nB2 002990234 Q87HL5_nD1 Q87HL5 Q87HL5_VIBPA VPA0948 DUF2892 domain-containing protein 4027 6-65 f a.8 6155 6155.1 6155.1.1 alpha duplicates or obligate multimers TOG superfamily SWEET transporter SWEET transporter 002098022 e5uhqA1 002990235 Q87PV6_nD1 Q87PV6 Q87PV6_VIBPA VP1395 DUF3850 domain-containing protein 1395 21-160 f a.1 2 2.7 2.7.1 beta barrels OB-fold Tail-associated lysozyme gp5-N Tail-associated lysozyme gp5-N 002475122 e6rbkC1 002990236 Q87FI3_nD2 Q87FI3 Q87FI3_VIBPA VPA1696 Enoyl reductase (ER) domain-containing protein 4775 131-295 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000134642 e3gmsA1 002990237 Q87FI3_nD1 Q87FI3 Q87FI3_VIBPA VPA1696 Enoyl reductase (ER) domain-containing protein 4775 1-130,296-330 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 001155276 e4a27A6 002990238 Q87RW6_nD1 Q87RW6 Q87RW6_VIBPA VP0660 660 31-130 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001866758 e5bw0F1 002990239 Q87FJ9_nD2 Q87FJ9 Q87FJ9_VIBPA VPA1680 4759 176-355 f a.17 2005 2005.2 2005.2.1 a/b three-layered sandwiches HUP domain-like YdcF YdcF 000223833 e3ca8A1 002990240 Q87FJ9_nD1 Q87FJ9 Q87FJ9_VIBPA VPA1680 4759 36-175 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002464284 e6hftA1 002990241 Q87GL3_nD1 Q87GL3 Q87GL3_VIBPA VPA1302 DUF1800 family protein 4381 36-110,176-315 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001316866 e4oyyI1 002990242 Q87GL3_nD2 Q87GL3 Q87GL3_VIBPA VPA1302 DUF1800 family protein 4381 316-500 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001320023 e4oouB1 002990243 Q87LC7_nD1 Q87LC7 Q87LC7_VIBPA VP2685 2684 1-270 f a.13 246 246.1 246.1.1 a+b four layers Carbon-nitrogen hydrolase-like Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 000354146 e2w1vB1 002990244 Q87SX0_nD1 Q87SX0 Q87SX0_VIBPA VP0302 Zinc-binding protein 302 31-105,151-209 f a.3 4081 4081.1 4081.1.1 beta sandwiches Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related 000146198 e3kd4A1 002990245 Q87IW5_nD4 Q87IW5 Q87IW5_VIBPA VPA0491 3570 266-305,496-535 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 001902753 e4o9yD7 002990246 Q87IW5_nD3 Q87IW5 Q87IW5_VIBPA VPA0491 3570 206-265 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990247 Q87IW5_nD1 Q87IW5 Q87IW5_VIBPA VPA0491 3570 6-40,186-205 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002990248 Q87IW5_nD5 Q87IW5 Q87IW5_VIBPA VPA0491 3570 306-495 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 001722662 e5fd9A1 002990249 Q87IW5_nD2 Q87IW5 Q87IW5_VIBPA VPA0491 3570 41-185 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002429573 e6itsA1 002990250 Q87LE2_nD1 Q87LE2 Q87LE2_VIBPA VP2670 RNA polymerase sigma-54 factor 2669 21-45 f a.21 1004 1004.1 1004.1.1 extended segments RNA polymerase sigma-54 factor N-terminal region RNA polymerase sigma-54 factor N-terminal region RNA polymerase sigma-54 factor N-terminal region 002032432 e5ui8M3 002990251 Q87LE2_nD2 Q87LE2 Q87LE2_VIBPA VP2670 RNA polymerase sigma-54 factor 2669 121-275 f a.6 101 101.1 101.1.20 alpha arrays HTH HTH Sigma54 core-binding domain 002389283 e6gh5M1 002990252 Q87LE2_nD3 Q87LE2 Q87LE2_VIBPA VP2670 RNA polymerase sigma-54 factor 2669 276-425 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002032430 e5ui8M1 002990253 Q87LE2_nD4 Q87LE2 Q87LE2_VIBPA VP2670 RNA polymerase sigma-54 factor 2669 426-485 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001821888 e4mloA1 002990254 P59494_nD1 P59494 LAMB_VIBPA VPA1644 lamB Maltoporin 4723 26-430 f a.1 5084 5084.5 5084.5.2 beta barrels Outer membrane meander beta-barrels Porins Maltoporin-like 000028463 e1mprC1 002990255 Q87K98_nD4 Q87K98 MNMG_VIBPA VP3080 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 3079 556-620 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001164930 e3cp8C8 002990256 Q87K98_nD3 Q87K98 MNMG_VIBPA VP3080 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 3079 461-555 f a.6 3265 3265.1 3265.1.1 alpha arrays C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA C-terminal helical domain in tRNA modifying enzyme GidA 000147053 e3cesA3 002990257 Q87K98_nD2 Q87K98 MNMG_VIBPA VP3080 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 3079 201-340 f a.11 244 244.1 244.1.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C 000146730 e3cesA2 002990258 Q87K98_nD1 Q87K98 MNMG_VIBPA VP3080 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 3079 6-200,341-460 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001388427 e2zxiB1 002990259 Q87R97_nD2 Q87R97 Q87R97_VIBPA VP0900 900 181-280 f a.11 244 244.1 244.1.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C 001692473 e5dbjA2 002990260 Q87R97_nD1 Q87R97 Q87R97_VIBPA VP0900 900 6-180,281-410 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002793175 e7da9B1 002990261 Q03475_nD4 Q03475 FLIDL_VIBPA VPA1550 fliDL Lateral flagellar hook-associated protein 2 4629 36-65,271-395 f a.7 601 601.50 601.50.1 alpha bundles Four-helical up-and-down bundle Flagellar cap protein FliD helical bundle domain Flagellar cap protein FliD helical bundle domain 002036579 e5h5vC3 002990262 Q03475_nD3 Q03475 FLIDL_VIBPA VPA1550 fliDL Lateral flagellar hook-associated protein 2 4629 6-35,396-445 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002990263 Q03475_nD1 Q03475 FLIDL_VIBPA VPA1550 fliDL Lateral flagellar hook-associated protein 2 4629 96-215 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002559771 e6iwyA2 002990264 Q03475_nD2 Q03475 FLIDL_VIBPA VPA1550 fliDL Lateral flagellar hook-associated protein 2 4629 66-95,216-265 f a.3 3943 3943.1 3943.1.1 beta sandwiches Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains 002031930 e5h5wA2 002990265 Q87KV6_nD1 Q87KV6 Q87KV6_VIBPA VP2869 2868 1-505 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002808506 e7vsiA1 002990266 Q87JY3_nD3 Q87JY3 Q87JY3_VIBPA VPA0115 CdaR family transcriptional regulator 3194 291-380 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001266986 e3onqC1 002990267 Q87JY3_nD1 Q87JY3 Q87JY3_VIBPA VPA0115 CdaR family transcriptional regulator 3194 1-130 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001506854 e2w1tA2 002990268 Q87JY3_nD2 Q87JY3 Q87JY3_VIBPA VPA0115 CdaR family transcriptional regulator 3194 131-290 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002712634 e6ttsB1 002990269 Q87LE0_nD1 Q87LE0 Q87LE0_VIBPA VP2672 2671 1-145 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000007003 e1a6jA1 002990270 Q87Q99_nD1 Q87Q99 Q87Q99_VIBPA VP1251 Thioredoxin reductase 1251 1-115,246-319 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002990271 Q87Q99_nD2 Q87Q99 Q87Q99_VIBPA VP1251 Thioredoxin reductase 1251 116-245 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002832233 e7e52A2 002990272 Q87GI3_nD1 Q87GI3 Q87GI3_VIBPA VPA1333 DUF4860 domain-containing protein 4412 31-160 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001870509 e5kewB1 002990273 Q87JC0_nD1 Q87JC0 Q87JC0_VIBPA VPA0333 MFS transporter 3412 6-195 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001495364 e4uvmA1 002990274 Q87JC0_nD2 Q87JC0 Q87JC0_VIBPA VPA0333 MFS transporter 3412 196-395 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002990275 Q87MF6_nD1 Q87MF6 Q87MF6_VIBPA VP2299 2299 1-114 f a.11 304 304.5 304.5.1 a+b two layers Alpha-beta plaits GlnB-like GlnB-like 002802079 e7p50A1 002990276 Q87Q52_nD1 Q87Q52 CDD_VIBPA VP1298 cdd Cytidine deaminase 1298 6-180 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 001202188 e4eg2H3 002990277 Q87Q52_nD2 Q87Q52 CDD_VIBPA VP1298 cdd Cytidine deaminase 1298 171-295 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 002519555 e6k63A2 002990278 Q87GM3_nD1 Q87GM3 ADE_VIBPA VPA1292 Adenine deaminase 4371 1-330 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000402789 e3ou8B1 002990279 Q87JM0_nD1 Q87JM0 Q87JM0_VIBPA VPA0229 3308 1-418 f a.10 3950 3950.1 3950.1.1 alpha complex topology Bacterial vitamin C transporter UlaA/SgaT Bacterial vitamin C transporter UlaA/SgaT Bacterial vitamin C transporter UlaA/SgaT 001503839 e4rp9A1 002990280 Q87GC1_nD1 Q87GC1 Q87GC1_VIBPA VPA1396 Tn7_TnsA-like_N domain-containing protein 4475 6-140 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000011023 e1t0fA2 002990281 Q87GC1_nD2 Q87GC1 Q87GC1_VIBPA VPA1396 Tn7_TnsA-like_N domain-containing protein 4475 141-220 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002724311 e7bzhA1 002990282 Q87IN0_nD1 Q87IN0 Q87IN0_VIBPA VPA0576 Phenylalanine-4-hydroxylase 3655 6-255 f a.14 257 257.1 257.1.1 a+b complex topology Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Aromatic aminoacid monoxygenases, catalytic and oligomerization domains Aromatic aminoacid monoxygenases, catalytic and oligomerization domains 000322426 e2v27B1 002990283 Q87PU9_nD1 Q87PU9 Q87PU9_VIBPA VP1402 Type VI secretion system contractile sheath small subunit 1402 31-155 f a.17 2499 2499.2 2499.2.1 a/b three-layered sandwiches Subtilisin-like Domain III of tail sheath protein Gp18 Domain III of tail sheath protein Gp18 002152022 e5n8nM1 002990284 Q87K39_nD2 Q87K39 Q87K39_VIBPA VPA0059 3138 181-365 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002990285 Q87K39_nD1 Q87K39 Q87K39_VIBPA VPA0059 3138 6-180 f a.8 7002 7002.1 7002.1.1 alpha duplicates or obligate multimers TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B 002423082 e5v2sA4 002990286 Q87RQ9_nD1 Q87RQ9 Y718_VIBPA VP0718 UPF0250 protein VP0718 718 6-90 f a.11 304 304.52 304.52.1 a+b two layers Alpha-beta plaits YbeD/HP0495-like YbeD/HP0495-like 000005377 e2joqA1 002990287 Q87KJ8_nD3 Q87KJ8 Q87KJ8_VIBPA VP2979 2978 401-590 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 000412326 e3pjxA1 002990288 Q87KJ8_nD4 Q87KJ8 Q87KJ8_VIBPA VP2979 2978 591-828 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 000412323 e3pjuA1 002990289 Q87KJ8_nD1 Q87KJ8 Q87KJ8_VIBPA VP2979 2978 1-190,281-360 f a.12 301 301.7 301.7.1 a+b three layers Bacillus chorismate mutase-like YjgF-like YjgF-like 001098403 e4bpsA2 002990290 Q87KJ8_nD2 Q87KJ8 Q87KJ8_VIBPA VP2979 2978 191-280 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000134924 e3h9nA1 002990291 Q87PR2_nD1 Q87PR2 Q87PR2_VIBPA VP1439 1439 16-215,486-495 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000988506 e4a2aB1 002990292 Q87PR2_nD2 Q87PR2 Q87PR2_VIBPA VP1439 1439 221-395,426-485 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002779420 e7krtB2 002990293 Q87PR2_nD3 Q87PR2 Q87PR2_VIBPA VP1439 1439 496-635 f a.3 511 511.1 511.1.1 beta sandwiches Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain 001919146 e5tkyA2 002990294 Q87JI4_nD2 Q87JI4 Q87JI4_VIBPA VPA0269 Flagellar basal-body rod protein FlgG 3348 86-220 f a.5 4167 4167.1 4167.1.1 beta complex topology Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain 002516325 e6jf2B1 002990295 Q87JI4_nD1 Q87JI4 Q87JI4_VIBPA VPA0269 Flagellar basal-body rod protein FlgG 3348 1-45,66-85,221-260 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002990296 Q87I67_nD2 Q87I67 Q87I67_VIBPA VPA0739 3818 6-25,276-455 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002990297 Q87I67_nD1 Q87I67 Q87I67_VIBPA VPA0739 3818 26-275 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002168239 e6f9gD1 002990298 Q87GT3_nD1 Q87GT3 Q87GT3_VIBPA VPA1232 Lysine transporter LysE 4311 6-204 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002990299 Q87LY0_nD1 Q87LY0 Q87LY0_VIBPA VP2478 histidine kinase 2478 16-375 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002990300 Q87LY0_nD6 Q87LY0 Q87LY0_VIBPA VP2478 histidine kinase 2478 1026-1128 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000002775 e2ofyA1 002990301 Q87LY0_nD2 Q87LY0 Q87LY0_VIBPA VP2478 histidine kinase 2478 376-440 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002990302 Q87LY0_nD5 Q87LY0 Q87LY0_VIBPA VP2478 histidine kinase 2478 721-970,996-1020 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010027 e1qkkA1 002990303 Q87LY0_nD3 Q87LY0 Q87LY0_VIBPA VP2478 histidine kinase 2478 456-530 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001392670 e4i5sB3 002990304 Q87LY0_nD4 Q87LY0 Q87LY0_VIBPA VP2478 histidine kinase 2478 531-700 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223387 e3crlB3 002990305 Q87K29_nD1 Q87K29 Q87K29_VIBPA VPA0069 Oxidoreductase 3148 16-153 f a.11 221 221.1 221.1.3 a+b two layers beta-Grasp Ubiquitin-related Sulfite oxidase, middle catalytic domain 000157373 e2blfA2 002990306 Q87K24_nD1 Q87K24 Q87K24_VIBPA VPA0074 3153 26-235 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001501363 e4rg8A1 002990307 Q87LD7_nD2 Q87LD7 Q87LD7_VIBPA VP2675 Magnesium transporter MgtE 2674 131-270 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000081419 e2yvxC3 002990308 Q87LD7_nD1 Q87LD7 Q87LD7_VIBPA VP2675 Magnesium transporter MgtE 2674 6-130 f a.9 109 109.13 109.13.1 alpha superhelices Repetitive alpha hairpins MgtE N-terminal domain-like MgtE N-terminal domain-like 000326759 e2yvyA1 002990309 Q87LD7_nD3 Q87LD7 Q87LD7_VIBPA VP2675 Magnesium transporter MgtE 2674 271-450 f a.8 5079 5079.1 5079.1.1 alpha duplicates or obligate multimers Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain 002101903 e5x9hA2 002990310 Q87LU0_nD1 Q87LU0 Q87LU0_VIBPA VP2521 2521 1-183 f a.12 285 285.1 285.1.1 a+b three layers N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like 001900591 e4bxdB2 002990311 Q87QK1_nD1 Q87QK1 LPXH_VIBPA VP1148 lpxH UDP-2,3-diacylglucosamine hydrolase 1148 1-240 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 002580343 e6pibA1 002990312 Q87MK8_nD1 Q87MK8 CCMA_VIBPA VP2223 ccmA Cytochrome c biogenesis ATP-binding export protein CcmA 2223 1-205 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002990313 Q87KC9_nD1 Q87KC9 Q87KC9_VIBPA VP3048 3047 6-215 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002644300 e6ks1A1 002990314 Q87N90_nD2 Q87N90 Q87N90_VIBPA VP1985 Protein kinase domain-containing protein 1985 186-395 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 002327098 e5yjzA1 002990315 Q87N90_nD1 Q87N90 Q87N90_VIBPA VP1985 Protein kinase domain-containing protein 1985 6-185 f a.4 207 207.1 207.1.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats 001669609 e1xeuA2 002990316 Q87IH9_nD1 Q87IH9 Q87IH9_VIBPA VPA0627 Ubiquinol oxidase subunit 2 3706 26-115 f a.21 5040 5040.1 5040.1.1 extended segments Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region 002772351 e7n9zG2 002990317 Q87IH9_nD2 Q87IH9 Q87IH9_VIBPA VPA0627 Ubiquinol oxidase subunit 2 3706 116-280 f a.3 3156 3156.1 3156.1.1 beta sandwiches Cupredoxin-like Cupredoxin-related Cupredoxin-related 002772350 e7n9zG1 002990318 Q87I71_nD2 Q87I71 Q87I71_VIBPA VPA0735 DUF1254 domain-containing protein 3814 236-483 f a.3 10 10.18 10.18.1 beta sandwiches jelly-roll VPA0735-like VPA0735-like 001258824 e3vb9B3 002990319 Q87I71_nD1 Q87I71 Q87I71_VIBPA VPA0735 DUF1254 domain-containing protein 3814 26-235 f a.3 10 10.18 10.18.1 beta sandwiches jelly-roll VPA0735-like VPA0735-like 001258825 e3vb9B4 002990320 Q87L52_nD1 Q87L52 Q87L52_VIBPA VP2763 Methylenetetrahydrofolate reductase 2762 1-295 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000370559 e3fsuA1 002990321 Q87QT0_nD4 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 351-415 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001389315 e4mt8A1 002990322 Q87QT0_nD3 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 276-350 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990323 Q87QT0_nD7 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 736-805 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 001505744 e2lffA1 002990324 Q87QT0_nD5 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 416-585 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002568309 e6qrjA2 002990325 Q87QT0_nD2 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 31-270 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002168239 e6f9gD1 002990326 Q87QT0_nD6 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 586-730 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002081078 e5kbxB1 002990327 Q87QT0_nD1 Q87QT0 Q87QT0_VIBPA VP1069 histidine kinase 1069 6-30 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002990328 Q87PK9_nD1 Q87PK9 Q87PK9_VIBPA VP1493 tRNA-uridine aminocarboxypropyltransferase 1493 6-15,51-245 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 001855572 e5apgC1 002990329 Q87TG7_nD1 Q87TG7 Q87TG7_VIBPA VP0103 Hydrolase TatD 102 1-253 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008933 e1yixA1 002990330 Q87GB3_nD1 Q87GB3 Q87GB3_VIBPA VPA1404 Capsular polysaccharide synthesis enzyme CpsB 4483 66-435 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002753401 e6zhpB1 002990331 Q87MQ2_nD4 Q87MQ2 Q87MQ2_VIBPA VP2179 dnaX DNA polymerase III subunit gamma/tau 2179 576-700 f a.11 327 327.14 327.14.1 a+b two layers Alpha-lytic protease prodomain-like C-terminal domain of DNA Polymerase III subunit tau C-terminal domain of DNA Polymerase III subunit tau 000184525 e2ayaA1 002990332 Q87MQ2_nD3 Q87MQ2 Q87MQ2_VIBPA VP2179 dnaX DNA polymerase III subunit gamma/tau 2179 246-360 f a.6 138 138.1 138.1.1 alpha arrays DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain 001393315 e1jr3C1 002990333 Q87MQ2_nD1 Q87MQ2 Q87MQ2_VIBPA VP2179 dnaX DNA polymerase III subunit gamma/tau 2179 6-175 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002037716 e3gliG5 002990334 Q87MQ2_nD2 Q87MQ2 Q87MQ2_VIBPA VP2179 dnaX DNA polymerase III subunit gamma/tau 2179 176-240 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001344071 e1njgA4 002990335 Q87MS9_nD1 Q87MS9 Q87MS9_VIBPA VP2152 Protease 4 2152 6-560 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001174292 e3bf0D5 002990336 Q87P81_nD1 Q87P81 Q87P81_VIBPA VP1637 1637 1-658 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002323942 e5u1sA3 002990337 Q87S19_nD1 Q87S19 RLMN_VIBPA VP0605 rlmN Dual-specificity RNA methyltransferase RlmN 605 6-65 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 002128086 e5hr7B2 002990338 Q87S19_nD2 Q87S19 RLMN_VIBPA VP0605 rlmN Dual-specificity RNA methyltransferase RlmN 605 66-360 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000419063 e3rfaB2 002990339 Q87KI2_nD1 Q87KI2 Q87KI2_VIBPA VP2995 2994 1-100 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000021382 e1qfjC1 002990340 Q87KI2_nD2 Q87KI2 Q87KI2_VIBPA VP2995 2994 101-235 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 000106482 e1qfjC2 002990341 Q87GJ3_nD1 Q87GJ3 Q87GJ3_VIBPA VPA1323 KTSC domain-containing protein 4402 56-95 f a.11 284 284.2 284.2.1 a+b two layers FKBP-like Chitinase insertion domain Chitinase insertion domain 002529893 e4wiwA2 002990342 Q87N50_nD2 Q87N50 Q87N50_VIBPA VP2025 SBP_bac_5 domain-containing protein 2025 81-135,251-375,601-665 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001907038 e5icqA2 002990343 Q87N50_nD1 Q87N50 Q87N50_VIBPA VP2025 SBP_bac_5 domain-containing protein 2025 136-250 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002526490 e6ofqA3 002990344 Q87N50_nD3 Q87N50 Q87N50_VIBPA VP2025 SBP_bac_5 domain-containing protein 2025 376-600 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523537 e4onyB3 002990345 Q87P73_nD1 Q87P73 Q87P73_VIBPA VP1645 2-methylaconitate cis-trans isomerase PrpF 1645 11-185 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 000007501 e2h9fA1 002990346 Q87P73_nD2 Q87P73 Q87P73_VIBPA VP1645 2-methylaconitate cis-trans isomerase PrpF 1645 186-380 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 002080284 e5k87B2 002990347 Q87NM9_nD1 Q87NM9 Q87NM9_VIBPA VP1839 AraC family transcriptional regulator 1839 6-160 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 002668493 e6m6vD1 002990348 Q87IM6_nD1 Q87IM6 Q87IM6_VIBPA VPA0580 Type III effector 3659 11-120 f a.6 3438 3438.1 3438.1.1 alpha arrays Unknown function protein VPA0580 Unknown function protein VPA0580 Unknown function protein VPA0580 000324012 e2qhqB1 002990349 Q87PN3_nD2 Q87PN3 Q87PN3_VIBPA VP1468 1468 181-335 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002157035 e6ejiA1 002990350 Q87PN3_nD1 Q87PN3 Q87PN3_VIBPA VP1468 1468 6-180,336-355 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001870462 e4qlbD1 002990351 Q87RE3_nD1 Q87RE3 Q87RE3_VIBPA VP0854 854 21-320 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 001162135 e4a2lE6 002990352 Q87RE3_nD6 Q87RE3 Q87RE3_VIBPA VP0854 854 1021-1075 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001758882 e1xs9A2 002990353 Q87RE3_nD2 Q87RE3 Q87RE3_VIBPA VP0854 854 321-630 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 001527848 e3v9fA1 002990354 Q87RE3_nD5 Q87RE3 Q87RE3_VIBPA VP0854 854 856-995 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223631 e3jz3B3 002990355 Q87RE3_nD3 Q87RE3 Q87RE3_VIBPA VP0854 854 631-735 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001527850 e3v9fA3 002990356 Q87RE3_nD7 Q87RE3 Q87RE3_VIBPA VP0854 854 1076-1125 f a.6 101 101.1 101.1.6 alpha arrays HTH HTH TrpR 001212039 e3lsgB4 002990357 Q87RE3_nD4 Q87RE3 Q87RE3_VIBPA VP0854 854 736-770,791-850 f a.8 4207 4207.1 4207.1.2 alpha duplicates or obligate multimers Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region 002121148 e5n9jE1 002990358 Q87QW9_nD3 Q87QW9 PURR_VIBPA VP1030 purR HTH-type transcriptional repressor PurR 1030 161-295,321-334 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002990359 Q87QW9_nD1 Q87QW9 PURR_VIBPA VP1030 purR HTH-type transcriptional repressor PurR 1030 1-45 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002647093 e7ce1K1 002990360 Q87QW9_nD2 Q87QW9 PURR_VIBPA VP1030 purR HTH-type transcriptional repressor PurR 1030 46-160,296-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002049804 e3edcA2 002990361 Q87PC7_nD4 Q87PC7 Q87PC7_VIBPA VP1590 endopeptidase La 1590 421-530 f a.17 3010 3010.1 3010.1.1 a/b three-layered sandwiches C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains 001117764 e4fw9A5 002990362 Q87PC7_nD3 Q87PC7 Q87PC7_VIBPA VP1590 endopeptidase La 1590 291-420 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002794666 e7ev6A1 002990363 Q87PC7_nD1 Q87PC7 Q87PC7_VIBPA VP1590 endopeptidase La 1590 6-200 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001117760 e4fw9A1 002990364 Q87PC7_nD2 Q87PC7 Q87PC7_VIBPA VP1590 endopeptidase La 1590 201-290 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001572549 e3k1jA1 002990365 Q87JW5_nD1 Q87JW5 Q87JW5_VIBPA VPA0133 3212 116-180 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001525143 e3ksxA2 002990366 Q87JW5_nD2 Q87JW5 Q87JW5_VIBPA VPA0133 3212 26-115,181-315 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002605688 e3ix1B2 002990367 Q87MK4_nD1 Q87MK4 Q87MK4_VIBPA VP2229 Phosphorelay protein LuxU 2229 6-135 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000184809 e2lp4A1 002990368 Q87MK4_nD2 Q87MK4 Q87MK4_VIBPA VP2229 Phosphorelay protein LuxU 2229 356-415 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002570781 e6s1kA3 002990369 Q87MK4_nD4 Q87MK4 Q87MK4_VIBPA VP2229 Phosphorelay protein LuxU 2229 606-740 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 001178512 e2ch4A4 002990370 Q87MK4_nD3 Q87MK4 Q87MK4_VIBPA VP2229 Phosphorelay protein LuxU 2229 416-600 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006559 e1i58A1 002990371 Q87P22_nD1 Q87P22 Q87P22_VIBPA VP1696 sctC Type 3 secretion system secretin 1696 41-115 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 002722150 e7ah95J3 002990372 Q87P22_nD5 Q87P22 Q87P22_VIBPA VP1696 sctC Type 3 secretion system secretin 1696 576-615 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002579044 e6rwxx2 002990373 Q87P22_nD2 Q87P22 Q87P22_VIBPA VP1696 sctC Type 3 secretion system secretin 1696 116-180 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002578913 e6rwkz1 002990374 Q87P22_nD4 Q87P22 Q87P22_VIBPA VP1696 sctC Type 3 secretion system secretin 1696 301-340,361-545 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002468382 e6i1yC1 002990375 Q87P22_nD3 Q87P22 Q87P22_VIBPA VP1696 sctC Type 3 secretion system secretin 1696 181-300 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002722149 e7ah95J2 002990376 Q87K14_nD1 Q87K14 Q87K14_VIBPA VPA0084 3163 6-490,526-560 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002808506 e7vsiA1 002990377 Q87K14_nD2 Q87K14 Q87K14_VIBPA VPA0084 3163 511-525,561-579 f a.6 4070 4070.1 4070.1.1 alpha arrays FtsH protease domain-like FtsH protease domain-like FtsH protease domain-like 000185066 e3b4rA1 002990378 Q87T20_nD1 Q87T20 HSLV_VIBPA VP0250 hslV ATP-dependent protease subunit HslV 250 1-175 f a.13 210 210.1 210.1.1 a+b four layers Ntn/PP2C Ntn Proteasome subunits 000087333 e1g3kB1 002990379 Q87SB3_nD2 Q87SB3 Q87SB3_VIBPA VP0511 Single-stranded-DNA-specific exonuclease RecJ 511 326-455 f a.12 5104 5104.1 5104.1.1 a+b three layers C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases 001843722 e5f55A2 002990380 Q87SB3_nD1 Q87SB3 Q87SB3_VIBPA VP0511 Single-stranded-DNA-specific exonuclease RecJ 511 6-325 f a.17 2006 2006.1 2006.1.2 a/b three-layered sandwiches HAD domain-like HAD domain-related DHH phosphoesterases 001843721 e5f55A1 002990381 Q87SB3_nD3 Q87SB3 Q87SB3_VIBPA VP0511 Single-stranded-DNA-specific exonuclease RecJ 511 461-579 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001843723 e5f55A3 002990382 Q87PB1_nD3 Q87PB1 Q87PB1_VIBPA VP1606 1606 341-665 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 002326933 e5wqlD3 002990383 Q87PB1_nD1 Q87PB1 Q87PB1_VIBPA VP1606 1606 26-240 f a.7 3694 3694.1 3694.1.1 alpha bundles Tail specific protease helical domain Tail specific protease helical domain Tail specific protease helical domain 002323998 e5wqlC1 002990384 Q87PB1_nD2 Q87PB1 Q87PB1_VIBPA VP1606 1606 241-340 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 002323999 e5wqlC2 002990385 Q87HH4_nD5 Q87HH4 Q87HH4_VIBPA VPA0991 DUF11 domain-containing protein 4070 511-595 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002491367 e6fx6A3 002990386 Q87HH4_nD2 Q87HH4 Q87HH4_VIBPA VPA0991 DUF11 domain-containing protein 4070 51-235 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001699700 e4yu6A1 002990387 Q87HH4_nD1 Q87HH4 Q87HH4_VIBPA VPA0991 DUF11 domain-containing protein 4070 21-45 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000011483 e1k7iA2 002990388 Q87HH4_nD4 Q87HH4 Q87HH4_VIBPA VPA0991 DUF11 domain-containing protein 4070 396-500 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001773 e1l0qA1 002990389 Q87HH4_nD3 Q87HH4 Q87HH4_VIBPA VPA0991 DUF11 domain-containing protein 4070 236-385 f a.5 5090 5090.2 5090.2.1 beta complex topology Viral glycoprotein, central and dimerisation domains-like Immune inhibitor A metallopeptidase C-terminal domain Immune inhibitor A metallopeptidase C-terminal domain 001699702 e4yu6A3 002990390 Q87TC2_nD1 Q87TC2 BIOH_VIBPA VP0148 bioH Pimeloyl-[acyl-carrier protein] methyl ester esterase 148 6-255 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000010815 e1m33A1 002990391 Q87NH7_nD1 Q87NH7 Q87NH7_VIBPA VP1891 Phage protein 1891 21-85 f a.11 3986 3986.2 3986.2.1 a+b two layers GTP-binding protein lepA C-terminal domain-like Antitoxin Dmd Antitoxin Dmd 001851177 e5hy3B1 002990392 Q87JJ4_nD2 Q87JJ4 Q87JJ4_VIBPA VPA0255 DUF218 domain-containing protein 3334 171-275 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002324029 e5xsjL1 002990393 Q87JJ4_nD1 Q87JJ4 Q87JJ4_VIBPA VPA0255 DUF218 domain-containing protein 3334 1-170 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001836757 e3bblA2 002990394 Q87JU4_nD1 Q87JU4 Q87JU4_VIBPA VPA0154 3233 51-130 f a.18 2484 2484.6 2484.6.1 mixed a+b and a/b Ribonuclease H-like Periplasmic domain of ExbD/TolR Periplasmic domain of ExbD/TolR 001685126 e5by4A1 002990395 Q87K30_nD1 Q87K30 Q87K30_VIBPA VPA0068 3147 51-165 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002324029 e5xsjL1 002990396 Q87K30_nD2 Q87K30 Q87K30_VIBPA VPA0068 3147 16-50,171-205 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002990397 Q87K30_nD3 Q87K30 Q87K30_VIBPA VPA0068 3147 206-363 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002990398 Q87ST2_nD3 Q87ST2 DJLA_VIBPA VP0340 djlA Co-chaperone protein DjlA 340 216-280 f a.7 650 650.1 650.1.1 alpha bundles Chaperone J-domain Chaperone J-domain Chaperone J-domain 000141044 e3ag7A1 002990399 Q87ST2_nD1 Q87ST2 DJLA_VIBPA VP0340 djlA Co-chaperone protein DjlA 340 6-35 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002990400 Q87ST2_nD2 Q87ST2 DJLA_VIBPA VP0340 djlA Co-chaperone protein DjlA 340 56-195 f a.6 4198 4198.1 4198.1.1 alpha arrays TerB-like TerB-like TerB-like 000047727 e2ou3B1 002990401 Q87G64_nD2 Q87G64 Q87G64_VIBPA VPA1453 DUF4381 domain-containing protein 4532 51-150 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000161437 e2hsbA1 002990402 Q87G64_nD1 Q87G64 Q87G64_VIBPA VPA1453 DUF4381 domain-containing protein 4532 26-50 f a.21 5042 5042.1 5042.1.1 extended segments Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region 001252174 e4ev6E5 002990403 Q87TF0_nD2 Q87TF0 Q87TF0_VIBPA VP0119 histidine kinase 119 191-348 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001888779 e5idjA1 002990404 Q87TF0_nD1 Q87TF0 Q87TF0_VIBPA VP0119 histidine kinase 119 6-190 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002710376 e6ph4B3 002990405 Q87L37_nD1 Q87L37 Q87L37_VIBPA VP2779 WD_REPEATS_REGION domain-containing protein 2778 21-328 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 002450329 e6qdvo1 002990406 Q87RR5_nD1 Q87RR5 Q87RR5_VIBPA VP0712 Lipoprotein 712 48-299 f a.1 4200 4200.1 4200.1.1 beta barrels YmcC-like YmcC-like YmcC-like 000862806 e4fvsA1 002990407 Q87SV0_nD1 Q87SV0 Q87SV0_VIBPA VP0323 322 26-120,256-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600407 e4dddA2 002990408 Q87SV0_nD2 Q87SV0 Q87SV0_VIBPA VP0323 322 121-255 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600406 e4dddA1 002990409 Q87GH3_nD1 Q87GH3 Q87GH3_VIBPA VPA1343 Type III secretion protein 4422 21-95 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000315449 e2ic6B1 002990410 Q87N13_nD1 Q87N13 Q87N13_VIBPA VP2063 2063 11-400 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 001684581 e5da0A1 002990411 Q87N13_nD2 Q87N13 Q87N13_VIBPA VP2063 2063 401-515 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 001692804 e3ihbA4 002990412 Q87J80_nD2 Q87J80 PSRP_VIBPA VPA0373 Putative phosphoenolpyruvate synthase regulatory protein 3452 126-275 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001779580 e5d0nA2 002990413 Q87J80_nD1 Q87J80 PSRP_VIBPA VPA0373 Putative phosphoenolpyruvate synthase regulatory protein 3452 6-120 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001779579 e5d0nA1 002990414 Q87K73_nD1 Q87K73 Q87K73_VIBPA VPA0025 DUF393 domain-containing protein 3104 1-105 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011311 e1nhyA2 002990415 Q87PH3_nD1 Q87PH3 POTA_VIBPA VP1529 potA Spermidine/putrescine import ATP-binding protein PotA 1529 6-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001265582 e2it1A8 002990416 Q87PH3_nD2 Q87PH3 POTA_VIBPA VP1529 potA Spermidine/putrescine import ATP-binding protein PotA 1529 251-375 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001265607 e2awnB5 002990417 Q87L94_nD1 Q87L94 Q87L94_VIBPA VP2718 2717 1-440 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 002760415 e7dswA1 002990418 Q87NR1_nD1 Q87NR1 Q87NR1_VIBPA VP1807 Osmotically inducible protein OsmC 1807 1-130 f a.11 324 324.1 324.1.1 a+b two layers OsmC-like OsmC-like OsmC-like 000005880 e1ml8A1 002990419 Q87Q98_nD1 Q87Q98 Q87Q98_VIBPA VP1252 Agglutination protein 1252 6-215 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000141626 e3pl0A1 002990420 Q87J13_nD1 Q87J13 Q87J13_VIBPA VPA0442 Radical SAM core domain-containing protein 3521 1-60 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002096143 e5wggA2 002990421 Q87J13_nD2 Q87J13 Q87J13_VIBPA VPA0442 Radical SAM core domain-containing protein 3521 61-460 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001014986 e4k38A1 002990422 Q87HX7_nD2 Q87HX7 Q87HX7_VIBPA VPA0829 3908 176-380 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 001551755 e4qgsA2 002990423 Q87HX7_nD1 Q87HX7 Q87HX7_VIBPA VPA0829 3908 6-175 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 000113521 e1oj7D2 002990424 Q87FQ2_nD1 Q87FQ2 Q87FQ2_VIBPA VPA1626 4705 21-204 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002516834 e6n5uA1 002990425 Q87S99_nD1 Q87S99 Q87S99_VIBPA VP0525 Flavohemoglobin expression-modulating QEGLA motif protein 525 16-385 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001211401 e3o0yC3 002990426 Q87QU5_nD1 Q87QU5 Q87QU5_VIBPA VP1054 1054 1-360 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002542983 e6rkoB2 002990427 Q87GB4_nD3 Q87GB4 Q87GB4_VIBPA VPA1403 4482 271-460 f a.14 7012 7012.1 7012.1.1 a+b complex topology Monotopic phosphoglycosyl transferase (PGT)-like Monotopic phosphoglycosyl transferase (PGT)-like Monotopic phosphoglycosyl transferase (PGT)-like 002394604 e5w7lB1 002990428 Q87GB4_nD2 Q87GB4 Q87GB4_VIBPA VPA1403 4482 136-250 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001713017 e3nklA1 002990429 Q87GB4_nD1 Q87GB4 Q87GB4_VIBPA VPA1403 4482 11-135 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 001153052 e1y2mB5 002990430 Q87GX7_nD1 Q87GX7 Q87GX7_VIBPA VPA1188 RF_PROK_I domain-containing protein 4267 1-130 f a.11 330 330.3 330.3.1 a+b two layers dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like 002644546 e6yssy1 002990431 Q87HC8_nD1 Q87HC8 Q87HC8_VIBPA VPA1037 4116 1-240 f a.13 210 210.2 210.2.1 a+b four layers Ntn/PP2C Protein serine/threonine phosphatase 2C, catalytic domain Protein serine/threonine phosphatase 2C, catalytic domain 002521871 e6ihrA1 002990432 Q87J14_nD1 Q87J14 Q87J14_VIBPA VPA0441 3520 22-470 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 001878861 e5i6cA1 002990433 Q87TP6_nD1 Q87TP6 Q87TP6_VIBPA VP0023 GDT1 family protein 23 1-184 f a.10 3921 3921.1 3921.1.1 alpha complex topology Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D 001488368 e4p6vE1 002990434 Q87Q00_nD1 Q87Q00 Q87Q00_VIBPA VP1350 1350 6-240 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001280097 e4aq6D2 002990435 Q87Q00_nD2 Q87Q00 Q87Q00_VIBPA VP1350 1350 241-375 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001280098 e4aq6D3 002990436 Q87JY9_nD1 Q87JY9 Q87JY9_VIBPA VPA0109 Orphan protein 3188 1-105 f a.11 3170 3170.1 3170.1.1 a+b two layers uncharacterized protein YP_926445.1 uncharacterized protein YP_926445.1 uncharacterized protein YP_926445.1 000146948 e2l6oA1 002990437 Q87TQ6_nD2 Q87TQ6 Q87TQ6_VIBPA VP0012 Beta sliding clamp 12 121-245 f a.11 227 227.1 227.1.1 a+b two layers DNA clamp DNA clamp DNA clamp 002791932 e7az8B1 002990438 Q87TQ6_nD1 Q87TQ6 Q87TQ6_VIBPA VP0012 Beta sliding clamp 12 1-120 f a.11 227 227.1 227.1.1 a+b two layers DNA clamp DNA clamp DNA clamp 002522056 e6pthA3 002990439 Q87TQ6_nD3 Q87TQ6 Q87TQ6_VIBPA VP0012 Beta sliding clamp 12 246-365 f a.11 227 227.1 227.1.1 a+b two layers DNA clamp DNA clamp DNA clamp 002476835 e6e8eA1 002990440 Q87MF2_nD6 Q87MF2 Q87MF2_VIBPA VP2303 DNA polymerase III subunit alpha 2303 1081-1159 f a.11 3585 3585.1 3585.1.1 a+b two layers DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain 001308314 e4iqjD6 002990441 Q87MF2_nD1 Q87MF2 Q87MF2_VIBPA VP2303 DNA polymerase III subunit alpha 2303 6-270 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000980711 e4gx8B1 002990442 Q87MF2_nD2 Q87MF2 Q87MF2_VIBPA VP2303 DNA polymerase III subunit alpha 2303 271-560 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001117589 e2hpiA2 002990443 Q87MF2_nD5 Q87MF2 Q87MF2_VIBPA VP2303 DNA polymerase III subunit alpha 2303 966-1075 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000174477 e3kf8A1 002990444 Q87MF2_nD3 Q87MF2 Q87MF2_VIBPA VP2303 DNA polymerase III subunit alpha 2303 561-775 f a.6 3584 3584.1 3584.1.1 alpha arrays DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain 001410201 e2hnhA2 002990445 Q87MF2_nD4 Q87MF2 Q87MF2_VIBPA VP2303 DNA polymerase III subunit alpha 2303 781-960 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001117591 e2hpiA4 002990446 Q87L33_nD1 Q87L33 Q87L33_VIBPA VP2783 Peptidyl-prolyl cis-trans isomerase 2782 1-70,126-185 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 001145799 e2kfwA1 002990447 Q87L33_nD2 Q87L33 Q87L33_VIBPA VP2783 Peptidyl-prolyl cis-trans isomerase 2782 71-125 f a.11 284 284.4 284.4.1 a+b two layers FKBP-like Archaeal FKBP insertion domain Archaeal FKBP insertion domain 002528374 e4dt4A3 002990448 Q87HE9_nD2 Q87HE9 Q87HE9_VIBPA VPA1016 4095 196-370 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160547 e2gfpA2 002990449 Q87HE9_nD1 Q87HE9 Q87HE9_VIBPA VPA1016 4095 6-185 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002137981 e6ei3A2 002990450 Q79YX9_nD1 Q79YX9 Q79YX9_VIBPA VP1554 1554 51-80 f a.21 5056 5056.1 5056.1.1 extended segments Gated mechanosensitive channel Gated mechanosensitive channel Gated mechanosensitive channel 001680711 e4y7kA2 002990451 Q87ME2_nD1 Q87ME2 Q87ME2_VIBPA VP2313 Phosphatidate cytidylyltransferase 2313 1-280 f a.8 3896 3896.1 3896.1.1 alpha duplicates or obligate multimers Intramembrane CDP-DAG synthetase-related Intramembrane CDP-DAG synthetase-related Intramembrane CDP-DAG synthetase 001318717 e4q2gB1 002990452 Q87R12_nD1 Q87R12 Y986_VIBPA VP0986 UPF0229 protein VP0986 986 166-235 f a.8 4336 4336.1 4336.1.1 alpha duplicates or obligate multimers YheA/YmcA-like YheA/YmcA-like YheA/YmcA-like 000004404 e2pihB1 002990453 Q87R12_nD2 Q87R12 Y986_VIBPA VP0986 UPF0229 protein VP0986 986 31-40,126-165,236-423 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 000235688 e3txaA1 002990454 Q87HF4_nD1 Q87HF4 Q87HF4_VIBPA VPA1011 4090 1-250 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001405626 e4rjyC1 002990455 Q87HF4_nD2 Q87HF4 Q87HF4_VIBPA VPA1011 4090 251-334 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001312339 e3wgcB2 002990456 Q87IJ8_nD4 Q87IJ8 Q87IJ8_VIBPA VPA0608 deaD ATP-dependent RNA helicase DeaD 3687 471-540 f a.11 304 304.9 304.9.1 a+b two layers Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD 001145715 e3mojB1 002990457 Q87IJ8_nD3 Q87IJ8 Q87IJ8_VIBPA VPA0608 deaD ATP-dependent RNA helicase DeaD 3687 376-435 f a.8 3676 3676.1 3676.1.1 alpha duplicates or obligate multimers RNA helicase Hera dimerization domain RNA helicase Hera dimerization domain RNA helicase Hera dimerization domain 002082636 e5gi4B2 002990458 Q87IJ8_nD1 Q87IJ8 Q87IJ8_VIBPA VPA0608 deaD ATP-dependent RNA helicase DeaD 3687 1-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001086506 e4kbfB1 002990459 Q87IJ8_nD2 Q87IJ8 Q87IJ8_VIBPA VPA0608 deaD ATP-dependent RNA helicase DeaD 3687 216-375,441-470 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002466756 e6iehB6 002990460 Q87RP5_nD1 Q87RP5 Q87RP5_VIBPA VP0732 732 6-100 f a.11 327 327.11 327.11.2 a+b two layers Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I) 002781532 e7mqaSW1 002990461 Q87RP5_nD2 Q87RP5 Q87RP5_VIBPA VP0732 732 111-360 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000197432 e3b85A1 002990462 Q87KT5_nD1 Q87KT5 Q87KT5_VIBPA VP2891 2890 6-435 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000415013 e3ob6B1 002990463 Q87MR9_nD1 Q87MR9 Q87MR9_VIBPA VP2162 Surface anchored protein 2162 46-80 f a.5 4300 4300.1 4300.1.1 beta complex topology Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like Viral glycoprotein ectodomain-like 002124204 e5xeaB2 002990464 Q87TI9_nD3 Q87TI9 Q87TI9_VIBPA VP0080 80 316-385 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001314443 e4qhtC2 002990465 Q87TI9_nD4 Q87TI9 Q87TI9_VIBPA VP0080 80 391-445 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002990466 Q87TI9_nD2 Q87TI9 Q87TI9_VIBPA VP0080 80 136-315 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002990467 Q87TI9_nD1 Q87TI9 Q87TI9_VIBPA VP0080 80 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001822144 e5ep0A2 002990468 Q87I09_nD1 Q87I09 Q87I09_VIBPA VPA0797 DUF5062 domain-containing protein 3876 1-85 f a.6 6099 6099.1 6099.1.1 alpha arrays Uncharacterized protein VV2_0175 Uncharacterized protein VV2_0175 Uncharacterized protein VV2_0175 000223746 e2m4eA1 002990469 Q87RA8_nD2 Q87RA8 Q87RA8_VIBPA VP0889 889 206-310,331-515 f a.6 602 602.1 602.1.1 alpha arrays L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like 002121273 e5ltmA1 002990470 Q87RA8_nD1 Q87RA8 Q87RA8_VIBPA VP0889 889 6-55,76-205 f a.6 4952 4952.1 4952.1.1 alpha arrays L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like 000334622 e2rjrB2 002990471 Q87GC7_nD2 Q87GC7 Q87GC7_VIBPA VPA1390 Type I-F CRISPR-associated endoribonuclease Cas6/Csy4 4469 96-198 f a.11 304 304.51 304.51.1 a+b two layers Alpha-beta plaits CRISPR transcript (pre-crRNA) processing endoribonuclease-related CRISPR transcript (pre-crRNA) processing endoribonuclease-related 002541057 e6pigH1 002990472 Q87GC7_nD1 Q87GC7 Q87GC7_VIBPA VPA1390 Type I-F CRISPR-associated endoribonuclease Cas6/Csy4 4469 1-95 f a.11 304 304.51 304.51.1 a+b two layers Alpha-beta plaits CRISPR transcript (pre-crRNA) processing endoribonuclease-related CRISPR transcript (pre-crRNA) processing endoribonuclease-related 002541058 e6pigH2 002990473 Q87MH8_nD1 Q87MH8 Q87MH8_VIBPA VP2277 UPF0033 domain-containing protein 2277 1-80 f a.11 328 328.5 328.5.1 a+b two layers IF3-like SirA-like SirA-like 000135569 e3hz7A1 002990474 Q87L45_nD5 Q87L45 EFG1_VIBPA VP2771 fusA1 Elongation factor G 1 2770 606-695 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 001759018 e1darA5 002990475 Q87L45_nD2 Q87L45 EFG1_VIBPA VP2771 fusA1 Elongation factor G 1 2770 291-405 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001924341 e5ty0A2 002990476 Q87L45_nD1 Q87L45 EFG1_VIBPA VP2771 fusA1 Elongation factor G 1 2770 6-290 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002770187 e7n2vEF1 002990477 Q87L45_nD4 Q87L45 EFG1_VIBPA VP2771 fusA1 Elongation factor G 1 2770 486-605 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001231459 e2xexB8 002990478 Q87L45_nD3 Q87L45 EFG1_VIBPA VP2771 fusA1 Elongation factor G 1 2770 411-485 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 002597057 e6teoC4 002990479 Q87J28_nD1 Q87J28 Q87J28_VIBPA VPA0425 3504 1-205 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002990480 Q87P96_nD2 Q87P96 Q87P96_VIBPA VP1622 1622 17-85,156-360 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002990481 Q87P96_nD1 Q87P96 Q87P96_VIBPA VP1622 1622 86-155 f a.10 3281 3281.1 3281.1.1 alpha complex topology Sodium/proton antiporter subunits-like Sodium/proton antiporter subunits-like NADH-quinone oxidoreductase subunit L (NuoL)-related 000147072 e3rkoL1 002990482 Q87II9_nD1 Q87II9 Q87II9_VIBPA VPA0617 3696 21-265 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001174347 e3u9rB3 002990483 Q87II9_nD2 Q87II9 Q87II9_VIBPA VPA0617 3696 271-534 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001821896 e4q0gC2 002990484 Q87JW9_nD1 Q87JW9 Q87JW9_VIBPA VPA0129 3208 6-235 f a.7 180 180.1 180.1.1 alpha bundles Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase 001295906 e4px7A1 002990485 Q87KL0_nD1 Q87KL0 Q87KL0_VIBPA VP2967 Cystatin domain-containing protein 2966 36-125 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 002429403 e5zc1A1 002990486 Q87NN9_nD1 Q87NN9 Q87NN9_VIBPA VP1829 1829 1-85 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 002715699 e6x0ap1 002990487 Q87KH9_nD2 Q87KH9 Q87KH9_VIBPA VP2999 HEAT repeat domain-containing protein 2997 141-330 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002581370 e6i7sG2 002990488 Q87KH9_nD1 Q87KH9 Q87KH9_VIBPA VP2999 HEAT repeat domain-containing protein 2997 31-140 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001562401 e4y21A1 002990489 Q87KS5_nD1 Q87KS5 Q87KS5_VIBPA VP2901 ParB domain-containing protein 2900 36-70 f 002990490 Q87KS5_nD2 Q87KS5 Q87KS5_VIBPA VP2901 ParB domain-containing protein 2900 81-170 f a.14 876 876.1 876.1.1 a+b complex topology ParB/Sulfiredoxin ParB/Sulfiredoxin ParB/Sulfiredoxin 002503123 e6nr6A2 002990491 Q87KS5_nD3 Q87KS5 Q87KS5_VIBPA VP2901 ParB domain-containing protein 2900 181-355 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002085426 e5nugB6 002990492 Q87T90_nD2 Q87T90 SLMA_VIBPA VP0180 slmA Nucleoid occlusion factor SlmA 180 61-195 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 001063560 e4gctC1 002990493 Q87T90_nD1 Q87T90 SLMA_VIBPA VP0180 slmA Nucleoid occlusion factor SlmA 180 6-60 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001821519 e5hbuB2 002990494 Q79YX3_nD1 Q79YX3 Q79YX3_VIBPA VP2227 2227 1-259 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002448312 e6iubA1 002990495 Q87JT3_nD1 Q87JT3 Q87JT3_VIBPA VPA0165 ABC transporter substrate-binding protein 3244 26-190 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002093127 e5uxsA1 002990496 Q87JT3_nD2 Q87JT3 Q87JT3_VIBPA VPA0165 ABC transporter substrate-binding protein 3244 191-289 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050619 e2o1eA1 002990497 Q87MP8_nD2 Q87MP8 Q87MP8_VIBPA VP2183 2183 171-365 f a.13 210 210.2 210.2.1 a+b four layers Ntn/PP2C Protein serine/threonine phosphatase 2C, catalytic domain Protein serine/threonine phosphatase 2C, catalytic domain 002475381 e6od1A2 002990498 Q87MP8_nD1 Q87MP8 Q87MP8_VIBPA VP2183 2183 11-170 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002599894 e6ontA1 002990499 Q87SC1_nD1 Q87SC1 Q87SC1_VIBPA VP0503 503 16-470 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002444945 e6csfM1 002990500 Q87TI2_nD1 Q87TI2 Q87TI2_VIBPA VP0087 DUF2383 domain-containing protein 87 6-140 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 000003956 e1jkvA1 002990501 Q87R44_nD1 Q87R44 Q87R44_VIBPA VP0954 954 1-90 f a.12 301 301.1 301.1.1 a+b three layers Bacillus chorismate mutase-like L30e-like L30e-like 001725651 e4x3lB1 002990502 Q87R44_nD2 Q87R44 Q87R44_VIBPA VP0954 954 91-244 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 000162167 e2i6dA1 002990503 Q87LH8_nD2 Q87LH8 Q87LH8_VIBPA VP2634 2633 171-435 f a.14 279 279.1 279.1.1 a+b complex topology LDH C-terminal domain-like LDH C-terminal domain-like LDH C-terminal domain-like 000007489 e1s6yA1 002990504 Q87LH8_nD1 Q87LH8 Q87LH8_VIBPA VP2634 2633 6-170 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009164 e1s6yA2 002990505 Q87HH1_nD1 Q87HH1 Q87HH1_VIBPA VPA0994 4073 31-260 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001515481 e4pwpA1 002990506 Q87Q53_nD2 Q87Q53 PURT_VIBPA VP1297 purT Formate-dependent phosphoribosylglycinamide formyltransferase 1297 106-390 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001164578 e3vmmA4 002990507 Q87Q53_nD1 Q87Q53 PURT_VIBPA VP1297 purT Formate-dependent phosphoribosylglycinamide formyltransferase 1297 1-105 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 000100145 e1kjiB3 002990508 Q87M18_nD3 Q87M18 RF3_VIBPA VP2440 prfC Peptide chain release factor 3 2440 391-525 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 001160085 e3tr5B5 002990509 Q87M18_nD1 Q87M18 RF3_VIBPA VP2440 prfC Peptide chain release factor 3 2440 6-280 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002646053 e6lkqv2 002990510 Q87M18_nD2 Q87M18 RF3_VIBPA VP2440 prfC Peptide chain release factor 3 2440 281-390 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002646054 e6lkqv3 002990511 Q87KS4_nD1 Q87KS4 Q87KS4_VIBPA VP2902 DGQHR domain-containing protein 2901 6-110,141-165 f a.14 876 876.1 876.1.1 a+b complex topology ParB/Sulfiredoxin ParB/Sulfiredoxin ParB/Sulfiredoxin 000085733 e1yzsA1 002990512 Q87KS4_nD2 Q87KS4 Q87KS4_VIBPA VP2902 DGQHR domain-containing protein 2901 186-325,356-375 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002717403 e6xssD1 002990513 Q87S08_nD2 Q87S08 Q87S08_VIBPA VP0616 guaB Inosine-5'-monophosphate dehydrogenase 616 6-90,211-490 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002825998 e7rfiG1 002990514 Q87S08_nD1 Q87S08 Q87S08_VIBPA VP0616 guaB Inosine-5'-monophosphate dehydrogenase 616 91-210 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 001716689 e4z87A2 002990515 Q87SD6_nD1 Q87SD6 Q87SD6_VIBPA VP0488 488 21-154 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001311846 e4cvuA4 002990516 Q87HZ8_nD3 Q87HZ8 Q87HZ8_VIBPA VPA0808 3887 46-55,186-270 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145751 e3lnnA2 002990517 Q87HZ8_nD4 Q87HZ8 Q87HZ8_VIBPA VPA0808 3887 31-45,276-350 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002990518 Q87HZ8_nD1 Q87HZ8 Q87HZ8_VIBPA VPA0808 3887 91-150 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001070258 e4l8jA1 002990519 Q87HZ8_nD2 Q87HZ8 Q87HZ8_VIBPA VPA0808 3887 56-90,151-185 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002990520 Q87M85_nD2 Q87M85 Q87M85_VIBPA VP2373 recD RecBCD enzyme subunit RecD 2373 191-240 f a.6 188 188.1 188.1.1 alpha arrays Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain Nuclear receptor ligand-binding domain 001145956 e4nqaI2 002990521 Q87M85_nD5 Q87M85 Q87M85_VIBPA VP2373 recD RecBCD enzyme subunit RecD 2373 571-640 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002770928 e7mr3D4 002990522 Q87M85_nD1 Q87M85 Q87M85_VIBPA VP2373 recD RecBCD enzyme subunit RecD 2373 16-135 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001231912 e3k70D3 002990523 Q87M85_nD3 Q87M85 Q87M85_VIBPA VP2373 recD RecBCD enzyme subunit RecD 2373 136-205,241-455,706-715 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001397092 e4ceiA4 002990524 Q87M85_nD4 Q87M85 Q87M85_VIBPA VP2373 recD RecBCD enzyme subunit RecD 2373 456-570,641-705 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001231913 e3k70D4 002990525 Q87PZ7_nD1 Q87PZ7 Q87PZ7_VIBPA VP1353 DUF2726 domain-containing protein 1353 36-160 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000011023 e1t0fA2 002990526 Q87PZ7_nD2 Q87PZ7 Q87PZ7_VIBPA VP1353 DUF2726 domain-containing protein 1353 171-210 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712015 e4rulA3 002990527 Q87L92_nD1 Q87L92 CYSH_VIBPA VP2720 cysH Phosphoadenosine 5'-phosphosulfate reductase 2719 26-245 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002713839 e6vpuC1 002990528 Q87HH8_nD2 Q87HH8 Q87HH8_VIBPA VPA0987 4066 111-245 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002632341 e6pfzA1 002990529 Q87HH8_nD5 Q87HH8 Q87HH8_VIBPA VPA0987 4066 486-555 f a.6 101 101.32 101.32.1 alpha arrays HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin 000185707 e4e6kG1 002990530 Q87HH8_nD6 Q87HH8 Q87HH8_VIBPA VPA0987 4066 556-630,791-835 f a.11 304 304.37 304.37.1 a+b two layers Alpha-beta plaits Sulfite reductase, domains 1 and 3 Sulfite reductase, domains 1 and 3 000064803 e1zj9B2 002990531 Q87HH8_nD1 Q87HH8 Q87HH8_VIBPA VPA0987 4066 1-110,246-320,411-420 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002990532 Q87HH8_nD3 Q87HH8 Q87HH8_VIBPA VPA0987 4066 321-405 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 001879133 e5fs8A1 002990533 Q87HH8_nD7 Q87HH8 Q87HH8_VIBPA VPA0987 4066 631-790 f a.12 296 296.1 296.1.1 a+b three layers Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 001180638 e2xsjD8 002990534 Q87HH8_nD4 Q87HH8 Q87HH8_VIBPA VPA0987 4066 421-475 f a.6 101 101.32 101.32.1 alpha arrays HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin 000185707 e4e6kG1 002990535 Q87HG5_nD4 Q87HG5 Q87HG5_VIBPA VPA1000 4079 306-435,456-485 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002990536 Q87HG5_nD3 Q87HG5 Q87HG5_VIBPA VPA1000 4079 206-265 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990537 Q87HG5_nD1 Q87HG5 Q87HG5_VIBPA VPA1000 4079 6-35,186-205 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002990538 Q87HG5_nD5 Q87HG5 Q87HG5_VIBPA VPA1000 4079 266-305,486-543 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 001902753 e4o9yD7 002990539 Q87HG5_nD2 Q87HG5 Q87HG5_VIBPA VPA1000 4079 41-170 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002429573 e6itsA1 002990540 Q87JT9_nD3 Q87JT9 Q87JT9_VIBPA VPA0159 Nickel transporter 3238 146-275 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001450 e2dibA1 002990541 Q87JT9_nD1 Q87JT9 Q87JT9_VIBPA VPA0159 Nickel transporter 3238 26-110 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001069601 e3hrzA5 002990542 Q87JT9_nD2 Q87JT9 Q87JT9_VIBPA VPA0159 Nickel transporter 3238 111-145 f 002990543 Q87G42_nD1 Q87G42 DEOD2_VIBPA VPA1475 deoD2 Purine nucleoside phosphorylase DeoD-type 2 4554 1-235 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 002160709 e6f4xA1 002990544 Q87L49_nD1 Q87L49 METJ_VIBPA VP2766 metJ Met repressor 2765 6-100 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 000047077 e1cmbA1 002990545 Q87RC0_nD3 Q87RC0 Q87RC0_VIBPA VP0877 877 161-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002990546 Q87RC0_nD2 Q87RC0 Q87RC0_VIBPA VP0877 877 91-160,271-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002990547 Q87RC0_nD1 Q87RC0 Q87RC0_VIBPA VP0877 877 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002990548 Q87NC4_nD5 Q87NC4 UVRC_VIBPA VP1944 uvrC UvrABC system protein C 1944 546-610 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001106777 e4m6wA2 002990549 Q87NC4_nD2 Q87NC4 UVRC_VIBPA VP1944 uvrC UvrABC system protein C 1944 101-245 f a.7 192 192.17 192.17.1 alpha bundles Long alpha-hairpin Rabenosyn-5 Rab-binding domain-like Rabenosyn-5 Rab-binding domain-like 000004687 e1z0kB1 002990550 Q87NC4_nD1 Q87NC4 UVRC_VIBPA VP1944 uvrC UvrABC system protein C 1944 11-95 f a.12 821 821.1 821.1.1 a+b three layers GIY-YIG endonuclease GIY-YIG endonuclease GIY-YIG endonuclease 000279419 e1yd6D1 002990551 Q87NC4_nD4 Q87NC4 UVRC_VIBPA VP1944 uvrC UvrABC system protein C 1944 376-545 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001078116 e2nrvA2 002990552 Q87NC4_nD3 Q87NC4 UVRC_VIBPA VP1944 uvrC UvrABC system protein C 1944 251-375 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000368729 e3hpgB2 002990553 Q87K70_nD1 Q87K70 Q87K70_VIBPA VPA0028 3107 6-205 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 002540225 e6pxaI1 002990554 Q87GU1_nD1 Q87GU1 Q87GU1_VIBPA VPA1224 Ty3-gypsy retrotransposon protein 4303 26-50 f a.21 5009 5009.1 5009.1.1 extended segments Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 000142444 e2y69M1 002990555 Q87II2_nD1 Q87II2 Q87II2_VIBPA VPA0624 3703 6-375 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 002718865 e6ywx881 002990556 Q87PZ8_nD2 Q87PZ8 Q87PZ8_VIBPA VP1352 1352 86-220 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 002721171 e7aiaBBB1 002990557 Q87PZ8_nD1 Q87PZ8 Q87PZ8_VIBPA VP1352 1352 6-85 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001197053 e4fquD6 002990558 Q87G68_nD1 Q87G68 Q87G68_VIBPA VPA1449 4528 6-30,281-305 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002990559 Q87G68_nD2 Q87G68 Q87G68_VIBPA VPA1449 4528 31-280 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002990560 Q87G68_nD3 Q87G68 Q87G68_VIBPA VPA1449 4528 306-365 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990561 Q87G68_nD4 Q87G68 Q87G68_VIBPA VPA1449 4528 366-630 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002990562 Q87T65_nD1 Q87T65 Q87T65_VIBPA VP0205 205 6-320 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002605245 e6w80A1 002990563 Q87T65_nD2 Q87T65 Q87T65_VIBPA VP0205 205 321-439 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002161941 e6cboC2 002990564 Q87G76_nD4 Q87G76 Q87G76_VIBPA VPA1441 SPOR domain-containing protein 4520 456-525 f a.11 4292 4292.2 4292.2.1 a+b two layers FlaG-like MAGUK binding stalk (MBS) domain MAGUK binding stalk (MBS) domain 002618675 e6jsxB1 002990565 Q87G76_nD3 Q87G76 Q87G76_VIBPA VPA1441 SPOR domain-containing protein 4520 276-290,316-455 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 000437287 e2y2xB1 002990566 Q87G76_nD5 Q87G76 Q87G76_VIBPA VPA1441 SPOR domain-containing protein 4520 541-730 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 000147862 e3t24A1 002990567 Q87G76_nD2 Q87G76 Q87G76_VIBPA VPA1441 SPOR domain-containing protein 4520 51-65,216-275 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001307870 e3fcgA1 002990568 Q87G76_nD1 Q87G76 Q87G76_VIBPA VPA1441 SPOR domain-containing protein 4520 71-210 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001807405 e3eifA4 002990569 Q87G76_nD6 Q87G76 Q87G76_VIBPA VPA1441 SPOR domain-containing protein 4520 291-315,531-540,701-1170 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002538942 e6ofrA1 002990570 Q87FK7_nD2 Q87FK7 ARAG_VIBPA VPA1672 araG Arabinose import ATP-binding protein AraG 4751 251-505 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002990571 Q87FK7_nD1 Q87FK7 ARAG_VIBPA VPA1672 araG Arabinose import ATP-binding protein AraG 4751 6-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002990572 Q87R73_nD1 Q87R73 DGTL1_VIBPA VP0925 Deoxyguanosinetriphosphate triphosphohydrolase-like protein 925 6-435 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 002732480 e7lwzA1 002990573 Q87NV4_nD1 Q87NV4 Q87NV4_VIBPA VP1764 1764 1-295 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002990574 Q87Q66_nD1 Q87Q66 Q87Q66_VIBPA VP1284 HTH cro/C1-type domain-containing protein 1284 6-75 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001145736 e4o8bA1 002990575 Q87Q66_nD2 Q87Q66 Q87Q66_VIBPA VP1284 HTH cro/C1-type domain-containing protein 1284 76-230,251-260 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002990576 Q87FH7_nD1 Q87FH7 Q87FH7_VIBPA VPA1702 4781 22-325 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001875090 e4x04B1 002990577 Q87GB9_nD1 Q87GB9 Q87GB9_VIBPA VPA1398 DUF1016_N domain-containing protein 4477 46-110 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002507075 e6jx3B1 002990578 Q87LI0_nD3 Q87LI0 Q87LI0_VIBPA VP2632 2631 161-290,321-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002990579 Q87LI0_nD1 Q87LI0 Q87LI0_VIBPA VP2632 2631 1-50 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002647093 e7ce1K1 002990580 Q87LI0_nD2 Q87LI0 Q87LI0_VIBPA VP2632 2631 56-160,291-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001252984 e3oqoC4 002990581 Q87I36_nD1 Q87I36 Q87I36_VIBPA VPA0770 RES domain-containing protein 3849 1-155 f a.14 237 237.1 237.1.1 a+b complex topology ADP-ribosylation ADP-ribosylation ADP-ribosylation 002491421 e6d0hA1 002990582 Q87LW1_nD1 Q87LW1 Q87LW1_VIBPA VP2497 Penicillin-binding protein 1B 2497 86-185 f a.2 506 506.2 506.2.1 beta meanders Colicin E3 ribonuclease domain-like UvrB interaction domain UvrB interaction domain 002448418 e6fzkA1 002990583 Q87LW1_nD2 Q87LW1 Q87LW1_VIBPA VP2497 Penicillin-binding protein 1B 2497 46-85,186-390 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001933509 e5hlbA3 002990584 Q87LW1_nD4 Q87LW1 Q87LW1_VIBPA VP2497 Penicillin-binding protein 1B 2497 391-485,596-780 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 001278481 e2v2fF2 002990585 Q87LW1_nD3 Q87LW1 Q87LW1_VIBPA VP2497 Penicillin-binding protein 1B 2497 486-595 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 001205108 e3vmaA11 002990586 Q87RK9_nD1 Q87RK9 Q87RK9_VIBPA VP0769 Flagellar biosynthesis protein FlgP 769 26-125 f a.11 872 872.10 872.10.1 a+b two layers Dodecin subunit-like Secreted protein HP1454 N-terminal domain Secreted protein HP1454 N-terminal domain 002140341 e5ok8B1 002990587 Q87IS8_nD1 Q87IS8 Q87IS8_VIBPA VPA0528 FAA_hydrolase domain-containing protein 3607 1-204 f a.3 11 11.9 11.9.1 beta sandwiches Immunoglobulin-like beta-sandwich FAH FAH 000147411 e3v77A1 002990588 Q87KB9_nD3 Q87KB9 Q87KB9_VIBPA VP3058 Acetolactate synthase 3057 346-545 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 002760966 e7egvA2 002990589 Q87KB9_nD1 Q87KB9 Q87KB9_VIBPA VP3058 Acetolactate synthase 3057 1-175 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 001401984 e4rjjA2 002990590 Q87KB9_nD2 Q87KB9 Q87KB9_VIBPA VP3058 Acetolactate synthase 3057 181-345 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 002760965 e7egvA1 002990591 Q87SM4_nD1 Q87SM4 Q87SM4_VIBPA VP0398 MarR family transcriptional regulator 398 1-130 f a.11 310 310.2 310.2.1 a+b two layers RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF 000005595 e1dd5A1 002990592 Q87SM4_nD2 Q87SM4 Q87SM4_VIBPA VP0398 MarR family transcriptional regulator 398 141-325 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001500429 e4u7bG2 002990593 Q87SM4_nD3 Q87SM4 Q87SM4_VIBPA VP0398 MarR family transcriptional regulator 398 326-385 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001247891 e2of7A3 002990594 Q87P19_nD2 Q87P19 Q87P19_VIBPA VP1699 1699 176-220 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002990595 Q87P19_nD1 Q87P19 Q87P19_VIBPA VP1699 1699 16-175 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001737458 e4zuaA1 002990596 Q87P19_nD3 Q87P19 Q87P19_VIBPA VP1699 1699 221-285 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002513 e1d5yA2 002990597 Q87PC9_nD1 Q87PC9 Q87PC9_VIBPA VP1588 DUF3634 family protein 1588 21-90 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001886879 e5ig8A1 002990598 Q87LP9_nD2 Q87LP9 PYRG_VIBPA VP2562 pyrG CTP synthase 2561 276-540 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 002068009 e5tkvA1 002990599 Q87LP9_nD1 Q87LP9 PYRG_VIBPA VP2562 pyrG CTP synthase 2561 1-275 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002068010 e5tkvA2 002990600 Q87M46_nD1 Q87M46 Q87M46_VIBPA VP2412 2412 41-483 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001082815 e4ihqA1 002990601 Q87RE0_nD1 Q87RE0 Q87RE0_VIBPA VP0857 857 1-75 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001756103 e2k5fA1 002990602 Q87LC9_nD1 Q87LC9 Q87LC9_VIBPA VP2683 PINc domain-containing protein 2682 6-155 f a.17 2006 2006.1 2006.1.4 a/b three-layered sandwiches HAD domain-like HAD domain-related PIN domain-like 000309827 e2hwwB1 002990603 Q87LC9_nD2 Q87LC9 Q87LC9_VIBPA VP2683 PINc domain-containing protein 2682 166-245 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 002074171 e5vm8A1 002990604 Q87LC9_nD3 Q87LC9 Q87LC9_VIBPA VP2683 PINc domain-containing protein 2682 156-165,246-458 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000317607 e2o0jA1 002990605 Q87R29_nD1 Q87R29 Y969_VIBPA VP0969 UPF0227 protein VP0969 969 1-179 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002600564 e4fleA1 002990606 Q87HJ3_nD1 Q87HJ3 Q87HJ3_VIBPA VPA0970 Tat pathway signal protein 4049 32-440 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 001919134 e5tj3A2 002990607 Q87SL8_nD1 Q87SL8 Q87SL8_VIBPA VP0404 rpoD RNA polymerase sigma factor RpoD 404 6-95 f a.6 3498 3498.1 3498.1.1 alpha arrays RNA polymerase sigma factor rpoD N-terminal domain RNA polymerase sigma factor rpoD N-terminal domain RNA polymerase sigma factor rpoD N-terminal domain 002599367 e6pstL3 002990608 Q87SL8_nD2 Q87SL8 Q87SL8_VIBPA VP0404 rpoD RNA polymerase sigma factor RpoD 404 101-195,216-455 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000004811 e1sigA1 002990609 Q87SL8_nD3 Q87SL8 Q87SL8_VIBPA VP0404 rpoD RNA polymerase sigma factor RpoD 404 456-615 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002589357 e5vt0L3 002990610 Q87QZ7_nD1 Q87QZ7 Q87QZ7_VIBPA VP1001 1001 1-225 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002990611 Q87HQ3_nD1 Q87HQ3 Q87HQ3_VIBPA VPA0910 3989 1-80 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002322905 e5y69A1 002990612 Q87I23_nD1 Q87I23 Q87I23_VIBPA VPA0783 DUF1622 domain-containing protein 3862 11-145 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002082799 e5khnB2 002990613 Q87R38_nD1 Q87R38 Q87R38_VIBPA VP0960 Uridine phosphorylase 960 6-250 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 000334032 e2oecA1 002990614 Q87QN1_nD1 Q87QN1 HTPX_VIBPA VP1118 htpX Protease HtpX 1118 1-285 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000868122 e4il3B1 002990615 Q87PN5_nD2 Q87PN5 Q87PN5_VIBPA VP1466 Glycos_transf_1 domain-containing protein 1466 181-360 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002775294 e7mi0A1 002990616 Q87PN5_nD1 Q87PN5 Q87PN5_VIBPA VP1466 Glycos_transf_1 domain-containing protein 1466 1-180,361-385 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002990617 Q87RN9_nD1 Q87RN9 PTH_VIBPA VP0738 pth Peptidyl-tRNA hydrolase 738 1-195 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 000010204 e2pthA1 002990618 Q87T89_nD2 Q87T89 COABC_VIBPA VP0181 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC 181 186-399 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009509 e1u7zA1 002990619 Q87T89_nD1 Q87T89 COABC_VIBPA VP0181 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC 181 1-180 f a.17 7564 7564.1 7564.1.1 a/b three-layered sandwiches Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 002711989 e6tgvA2 002990620 Q87JP1_nD2 Q87JP1 Q87JP1_VIBPA VPA0207 msrB Multifunctional fusion protein 3286 211-380 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 001885939 e5fa9B1 002990621 Q87JP1_nD1 Q87JP1 Q87JP1_VIBPA VPA0207 msrB Multifunctional fusion protein 3286 31-210 f a.11 304 304.3 304.3.2 a+b two layers Alpha-beta plaits HMA-related Peptide methionine sulfoxide reductase 001514029 e4d7lC1 002990622 Q87TB1_nD5 Q87TB1 Q87TB1_VIBPA VP0159 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase 159 561-625 f a.19 1077 1077.1 1077.1.1 few secondary structure elements RelA zinc-finger domain RelA zinc-finger domain RelA zinc-finger domain 001838837 e5iqr84 002990623 Q87TB1_nD2 Q87TB1 Q87TB1_VIBPA VP0159 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase 159 191-385 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 000006825 e2be3A1 002990624 Q87TB1_nD6 Q87TB1 Q87TB1_VIBPA VP0159 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase 159 626-705 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000344126 e2jheB1 002990625 Q87TB1_nD1 Q87TB1 Q87TB1_VIBPA VP0159 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase 159 6-190 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 002634175 e6s2tA1 002990626 Q87TB1_nD4 Q87TB1 Q87TB1_VIBPA VP0159 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase 159 481-540 f a.6 143 143.2 143.2.1 alpha arrays PABP domain-like Ribosomal protein L20 Ribosomal protein L20 002703815 e7jilQ1 002990627 Q87TB1_nD3 Q87TB1 Q87TB1_VIBPA VP0159 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase 159 386-475 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 001838836 e5iqr83 002990628 Q87HW4_nD3 Q87HW4 Q87HW4_VIBPA VPA0842 3921 141-200 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990629 Q87HW4_nD4 Q87HW4 Q87HW4_VIBPA VPA0842 3921 231-435 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002990630 Q87HW4_nD1 Q87HW4 Q87HW4_VIBPA VPA0842 3921 6-45,116-140 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 001546262 e4uosA1 002990631 Q87HW4_nD2 Q87HW4 Q87HW4_VIBPA VPA0842 3921 46-115 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002121288 e5ltvD2 002990632 Q87HW4_nD5 Q87HW4 Q87HW4_VIBPA VPA0842 3921 201-230,436-470 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 002773771 e6rw8A2 002990633 Q87PH7_nD1 Q87PH7 Q87PH7_VIBPA VP1525 Putrescine-binding periplasmic protein 1525 16-130,251-325 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002801655 e7oywA1 002990634 Q87PH7_nD2 Q87PH7 Q87PH7_VIBPA VP1525 Putrescine-binding periplasmic protein 1525 131-250,326-340 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002801655 e7oywA1 002990635 Q87FP4_nD1 Q87FP4 Q87FP4_VIBPA VPA1634 potE Putrescine transporter PotE 4713 6-435 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000415013 e3ob6B1 002990636 Q87RE5_nD1 Q87RE5 ZNUC_VIBPA VP0852 znuC Zinc import ATP-binding protein ZnuC 852 1-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002990637 Q87H71_nD1 Q87H71 Q87H71_VIBPA VPA1094 4173 26-175 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 002736932 e6zg3H1 002990638 Q87NW4_nD4 Q87NW4 Q87NW4_VIBPA VP1754 Diguanylate phosphodiesterase 1754 271-445 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002990639 Q87NW4_nD3 Q87NW4 Q87NW4_VIBPA VP1754 Diguanylate phosphodiesterase 1754 216-270 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002990640 Q87NW4_nD1 Q87NW4 Q87NW4_VIBPA VP1754 Diguanylate phosphodiesterase 1754 26-170 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002990641 Q87NW4_nD5 Q87NW4 Q87NW4_VIBPA VP1754 Diguanylate phosphodiesterase 1754 451-715 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 001411673 e4rnfA1 002990642 Q87NW4_nD2 Q87NW4 Q87NW4_VIBPA VP1754 Diguanylate phosphodiesterase 1754 6-25,191-215 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002990643 Q87PQ5_nD1 Q87PQ5 Q87PQ5_VIBPA VP1446 MltA-interacting MipA family protein 1446 26-240 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002990644 Q87PQ5_nD2 Q87PQ5 Q87PQ5_VIBPA VP1446 MltA-interacting MipA family protein 1446 241-434 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000191268 e2ervA1 002990645 Q87LX8_nD1 Q87LX8 Q87LX8_VIBPA VP2480 2480 1-30,61-325 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002772273 e7mbzA1 002990646 Q87QP6_nD1 Q87QP6 Q87QP6_VIBPA VP1103 Alanine dehydrogenase 1103 1-130,306-370 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 000337385 e2vojC2 002990647 Q87QP6_nD2 Q87QP6 Q87QP6_VIBPA VP1103 Alanine dehydrogenase 1103 131-305 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000337384 e2vojC1 002990648 Q87RF5_nD1 Q87RF5 Q87RF5_VIBPA VP0842 Citrate synthase 842 6-410 f a.10 172 172.1 172.1.1 alpha complex topology Citrate synthase-like Citrate synthase Citrate synthase 000176455 e3msuA1 002990649 Q87R83_nD2 Q87R83 Q87R83_VIBPA VP0914 914 141-315 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002598028 e6lufB2 002990650 Q87R83_nD1 Q87R83 Q87R83_VIBPA VP0914 914 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001095677 e4l4uA2 002990651 Q87R83_nD4 Q87R83 Q87R83_VIBPA VP0914 914 381-440 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002990652 Q87R83_nD3 Q87R83 Q87R83_VIBPA VP0914 914 316-380 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001314443 e4qhtC2 002990653 Q87FJ0_nD1 Q87FJ0 Q87FJ0_VIBPA VPA1689 4768 31-228 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000394933 e3norA1 002990654 Q87ND9_nD1 Q87ND9 NRFA_VIBPA VP1929 nrfA Cytochrome c-552 1929 28-475 f a.19 139 139.2 139.2.1 few secondary structure elements Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif 002605000 e6p73A1 002990655 Q87I45_nD2 Q87I45 Q87I45_VIBPA VPA0761 Aldehyde dehydrogenase 3840 221-425 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001902717 e4o6rC2 002990656 Q87I45_nD1 Q87I45 Q87I45_VIBPA VPA0761 Aldehyde dehydrogenase 3840 11-220,426-470 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901996 e4knaA1 002990657 Q87H85_nD2 Q87H85 Q87H85_VIBPA VPA1080 Nicotinamide riboside transporter PnuC 4159 131-155 f a.11 310 310.2 310.2.1 a+b two layers RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF 002319513 e6eriAz1 002990658 Q87H85_nD1 Q87H85 Q87H85_VIBPA VPA1080 Nicotinamide riboside transporter PnuC 4159 1-130,156-243 f a.8 6155 6155.2 6155.2.1 alpha duplicates or obligate multimers TOG superfamily PnuC PnuC 001400358 e4qtnC1 002990659 Q87K42_nD1 Q87K42 Q87K42_VIBPA VPA0056 DUF2850 domain-containing protein 3135 26-150 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001402068 e4u3qB1 002990660 Q87QU2_nD1 Q87QU2 Q87QU2_VIBPA VP1057 tolQ Tol-Pal system protein TolQ 1057 6-225 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002990661 Q87RT8_nD1 Q87RT8 EX7S_VIBPA VP0688 xseB Exodeoxyribonuclease 7 small subunit 688 6-60 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001681519 e4u7oA2 002990662 Q87S50_nD2 Q87S50 Q87S50_VIBPA VP0574 574 501-555 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002990663 Q87S50_nD1 Q87S50 Q87S50_VIBPA VP0574 574 16-500,556-734 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001779670 e4xtcM1 002990664 Q87JK9_nD2 Q87JK9 Q87JK9_VIBPA VPA0240 3319 71-230 f a.11 814 814.1 814.1.1 a+b two layers Chorismate lyase Chorismate lyase Chorismate lyase 000377189 e3f8lB1 002990665 Q87JK9_nD1 Q87JK9 Q87JK9_VIBPA VPA0240 3319 1-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001410173 e4hamA1 002990666 Q87KK2_nD1 Q87KK2 Q87KK2_VIBPA VP2975 Cof-type HAD-IIB family hydrolase 2974 1-274 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000145103 e3r4cA1 002990667 Q87LI5_nD1 Q87LI5 FETP_VIBPA VP2627 Probable Fe(2+)-trafficking protein 2626 1-80 f a.19 377 377.5 377.5.1 few secondary structure elements Glucocorticoid receptor-like YggX-like (Pfam 04362) YggX-like (Pfam 04362) 000089806 e1xs8A1 002990668 Q87MK9_nD1 Q87MK9 Q87MK9_VIBPA VP2222 Heme exporter protein B 2222 6-220 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002784862 e7r8eA2 002990669 Q87QT4_nD1 Q87QT4 Q87QT4_VIBPA VP1065 1065 1-138 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 001746268 e5cwfA1 002990670 Q87S91_nD2 Q87S91 Q87S91_VIBPA VP0533 Riboflavin biosynthesis protein 533 186-310 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001716898 e5a8aA1 002990671 Q87S91_nD1 Q87S91 Q87S91_VIBPA VP0533 Riboflavin biosynthesis protein 533 1-185 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000139347 e2x0kA2 002990672 Q87QQ0_nD1 Q87QQ0 Q87QQ0_VIBPA VP1099 1099 11-255 f a.7 150 150.1 150.1.2 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Heme oxygenase/Ribonucleotide reductase 002660630 e6zmbC1 002990673 Q87HE8_nD1 Q87HE8 Q87HE8_VIBPA VPA1017 4096 6-150 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001294 e2arcA1 002990674 Q87HE8_nD2 Q87HE8 Q87HE8_VIBPA VPA1017 4096 151-200 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001761206 e3lsgB1 002990675 Q87HE8_nD3 Q87HE8 Q87HE8_VIBPA VPA1017 4096 201-255 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001761512 e3oioA1 002990676 Q87T10_nD2 Q87T10 RL2_VIBPA VP0260 rplB 50S ribosomal protein L2 260 126-270 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001420584 e3j6bB1 002990677 Q87T10_nD1 Q87T10 RL2_VIBPA VP0260 rplB 50S ribosomal protein L2 260 21-125 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001860016 e5j8aCC1 002990678 Q87RY5_nD2 Q87RY5 Q87RY5_VIBPA VP0641 DNA-binding protein 641 106-190 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001298616 e4pt7C1 002990679 Q87RY5_nD1 Q87RY5 Q87RY5_VIBPA VP0641 DNA-binding protein 641 11-105 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000003434 e1l8qA2 002990680 Q87NA3_nD1 Q87NA3 Q87NA3_VIBPA VP1972 YCII domain-containing protein 1972 1-98 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000064513 e1mwqB1 002990681 Q87T69_nD2 Q87T69 Q87T69_VIBPA VP0201 201 76-198 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 000144000 e3pmoA1 002990682 Q87T69_nD1 Q87T69 Q87T69_VIBPA VP0201 201 1-75 f a.17 2003 2003.1 2003.1.8 a/b three-layered sandwiches Rossmann-like Rossmann-related MurCD/PglD N-terminal domain-like 001717894 e4m9cF1 002990683 Q87SB7_nD1 Q87SB7 Q87SB7_VIBPA VP0507 Branched-chain amino acid transport system carrier protein 507 6-425 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002808506 e7vsiA1 002990684 Q87LM0_nD1 Q87LM0 Q87LM0_VIBPA VP2591 5-formyltetrahydrofolate cyclo-ligase 2590 11-200 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 000163487 e2jcbA1 002990685 Q87SR6_nD1 Q87SR6 Q87SR6_VIBPA VP0356 Pyruvate kinase 356 71-165 f a.1 1 1.1 1.1.15 beta barrels cradle loop barrel RIFT-related PK beta-barrel domain-like 001516046 e3gg8C1 002990686 Q87SR6_nD2 Q87SR6 Q87SR6_VIBPA VP0356 Pyruvate kinase 356 1-70,171-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002141318 e6b6uA2 002990687 Q87SR6_nD3 Q87SR6 Q87SR6_VIBPA VP0356 Pyruvate kinase 356 351-470 f a.17 7518 7518.1 7518.1.1 a/b three-layered sandwiches PK C-terminal domain-like PK C-terminal domain-like PK C-terminal domain-like 001515914 e4yngE2 002990688 Q87RB3_nD1 Q87RB3 Q87RB3_VIBPA VP0884 884 6-240 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 001443178 e4v8vD5 002990689 Q87RB3_nD2 Q87RB3 Q87RB3_VIBPA VP0884 884 241-390 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002595479 e6ql5C3 002990690 Q87TN9_nD3 Q87TN9 FADB_VIBPA VP0030 fadB Fatty acid oxidation complex subunit alpha 30 496-620 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002599985 e6tnmA3 002990691 Q87TN9_nD4 Q87TN9 FADB_VIBPA VP0030 fadB Fatty acid oxidation complex subunit alpha 30 621-715 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000139172 e2wtbA2 002990692 Q87TN9_nD2 Q87TN9 FADB_VIBPA VP0030 fadB Fatty acid oxidation complex subunit alpha 30 311-495 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000098253 e1wdkB3 002990693 Q87TN9_nD1 Q87TN9 FADB_VIBPA VP0030 fadB Fatty acid oxidation complex subunit alpha 30 1-310 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000117440 e1wdkB4 002990694 Q87FD0_nD4 Q87FD0 Q87FD0_VIBPA VPA1749 FapA_N domain-containing protein 4828 196-210,231-270 f a.14 325 325.1 325.1.8 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein 001856212 e4wt8Ca1 002990695 Q87FD0_nD3 Q87FD0 Q87FD0_VIBPA VPA1749 FapA_N domain-containing protein 4828 151-160,211-230 f a.12 4169 4169.1 4169.1.2 a+b three layers Coronavirus spike protein receptor-binding domain Coronavirus spike protein receptor-binding domain Alpha-coronavirus spike protein receptor-binding domain 001906259 e5szsC2 002990696 Q87FD0_nD6 Q87FD0 Q87FD0_VIBPA VPA1749 FapA_N domain-containing protein 4828 431-500 f a.10 627 627.1 627.1.1 alpha complex topology VPS9 domain VPS9 domain VPS9 domain 001839379 e5j2lB1 002990697 Q87FD0_nD1 Q87FD0 Q87FD0_VIBPA VPA1749 FapA_N domain-containing protein 4828 41-70 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002098457 e5xnsA1 002990698 Q87FD0_nD5 Q87FD0 Q87FD0_VIBPA VPA1749 FapA_N domain-containing protein 4828 271-430,501-559 f a.4 207 207.6 207.6.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Serralysin-like metalloprotease-C Serralysin-like metalloprotease-C 001288503 e3p4gB1 002990699 Q87FD0_nD2 Q87FD0 Q87FD0_VIBPA VPA1749 FapA_N domain-containing protein 4828 76-150 f a.11 304 304.109 304.109.1 a+b two layers Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e 002106012 e5xxuY1 002990700 Q87HY5_nD1 Q87HY5 Q87HY5_VIBPA VPA0821 3900 6-255 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001779670 e4xtcM1 002990701 Q87KY4_nD2 Q87KY4 Q87KY4_VIBPA VP2840 Fumarate reductase flavoprotein subunit 2839 226-360 f a.14 278 278.1 278.1.1 a+b complex topology Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 000406838 e3p4pM2 002990702 Q87KY4_nD1 Q87KY4 Q87KY4_VIBPA VP2840 Fumarate reductase flavoprotein subunit 2839 1-225,361-440 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000406839 e3p4pM3 002990703 Q87KY4_nD3 Q87KY4 Q87KY4_VIBPA VP2840 Fumarate reductase flavoprotein subunit 2839 441-580 f a.7 604 604.2 604.2.1 alpha bundles Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 001339039 e3p4pM4 002990704 Q87RY1_nD1 Q87RY1 Q87RY1_VIBPA VP0645 Polyketide_cyc domain-containing protein 645 1-140 f a.11 331 331.3 331.3.1 a+b two layers TBP-like Bet v1-like Bet v1-like 000144571 e3tfzA1 002990705 Q79YV4_nD1 Q79YV4 Q79YV4_VIBPA VP2516 2516 6-80 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002142343 e5x3rA2 002990706 Q79YV4_nD2 Q79YV4 Q79YV4_VIBPA VP2516 2516 81-204 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 002142342 e5x3rA1 002990707 Q87IX8_nD2 Q87IX8 Q87IX8_VIBPA VPA0478 3557 226-325 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000288854 e2b5oB1 002990708 Q87IX8_nD1 Q87IX8 Q87IX8_VIBPA VPA0478 3557 1-225 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002641374 e6y9bA1 002990709 Q87IX8_nD3 Q87IX8 Q87IX8_VIBPA VPA0478 3557 326-450 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 002088108 e5o0xA2 002990710 Q87KR9_nD1 Q87KR9 Q87KR9_VIBPA VP2907 HrgA protein 2906 6-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002990711 Q87KR9_nD2 Q87KR9 Q87KR9_VIBPA VP2907 HrgA protein 2906 71-135 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002990712 Q87LQ7_nD1 Q87LQ7 Q87LQ7_VIBPA VP2554 2554 46-95,187-305 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 001513000 e4rnzA3 002990713 Q87T29_nD1 Q87T29 Q87T29_VIBPA VP0241 DUF805 domain-containing protein 241 6-130 f a.7 601 601.14 601.14.1 alpha bundles Four-helical up-and-down bundle Hemerythrin Hemerythrin 001549356 e4xpwA1 002990714 Q87K21_nD1 Q87K21 Q87K21_VIBPA VPA0077 3156 1-253 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001549483 e4z9yC1 002990715 Q87PF0_nD4 Q87PF0 Q87PF0_VIBPA VP1556 1556 416-445 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002321117 e6gapA2 002990716 Q87PF0_nD3 Q87PF0 Q87PF0_VIBPA VP1556 1556 296-395 f a.14 1042 1042.1 1042.1.1 a+b complex topology S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein 002611123 e6vv5B2 002990717 Q87PF0_nD5 Q87PF0 Q87PF0_VIBPA VP1556 1556 476-500 f a.21 3967 3967.1 3967.1.1 extended segments Mitoribosomal protein mS26 Mitoribosomal protein mS26 Mitoribosomal protein mS26 001551339 e5aj4Ad1 002990718 Q87PF0_nD2 Q87PF0 Q87PF0_VIBPA VP1556 1556 141-220 f a.1 3365 3365.1 3365.1.1 beta barrels N-terminal domain of minor coat protein pIII N-terminal domain of minor coat protein pIII N-terminal domain of minor coat protein pIII 001178993 e4g7wC2 002990719 Q87PF0_nD1 Q87PF0 Q87PF0_VIBPA VP1556 1556 26-100 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000145778 e3pptA1 002990720 Q87IV4_nD1 Q87IV4 Q87IV4_VIBPA VPA0502 3581 1-140,341-423 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 002810754 e7vemA2 002990721 Q87IV4_nD2 Q87IV4 Q87IV4_VIBPA VPA0502 3581 141-340 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002170231 e5yatB2 002990722 Q87TI3_nD1 Q87TI3 Q87TI3_VIBPA VP0086 Aminopeptidase N 86 1-130 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 000307848 e2d5kB1 002990723 Q87H77_nD1 Q87H77 Q87H77_VIBPA VPA1088 4167 6-30 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002990724 Q87H77_nD2 Q87H77 Q87H77_VIBPA VPA1088 4167 31-255 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001005116 e4jgoB1 002990725 Q87H77_nD5 Q87H77 Q87H77_VIBPA VPA1088 4167 516-785 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 000393645 e3n3tB1 002990726 Q87H77_nD3 Q87H77 Q87H77_VIBPA VPA1088 4167 256-340 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002990727 Q87H77_nD4 Q87H77 Q87H77_VIBPA VPA1088 4167 341-510 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002990728 Q87IF8_nD1 Q87IF8 Q87IF8_VIBPA VPA0648 3727 1-105 f a.11 304 304.53 304.53.1 a+b two layers Alpha-beta plaits DOPA dioxygenase-like DOPA dioxygenase-like 000005378 e2p8iA1 002990729 Q87MT8_nD4 Q87MT8 Q87MT8_VIBPA VP2143 DUF2357 domain-containing protein 2143 126-140,381-600 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 002517875 e6hz4N1 002990730 Q87MT8_nD3 Q87MT8 Q87MT8_VIBPA VP2143 DUF2357 domain-containing protein 2143 161-195,256-375 f a.12 4121 4121.1 4121.1.1 a+b three layers CorA soluble domain-like CorA soluble domain-like CorA soluble domain-like 001839926 e3rkgA1 002990731 Q87MT8_nD1 Q87MT8 Q87MT8_VIBPA VP2143 DUF2357 domain-containing protein 2143 1-125 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002319278 e5ot1A3 002990732 Q87MT8_nD2 Q87MT8 Q87MT8_VIBPA VP2143 DUF2357 domain-containing protein 2143 196-250 f 002990733 Q87KA7_nD1 Q87KA7 ATPG_VIBPA VP3070 atpG ATP synthase gamma chain 3069 1-288 f a.17 7519 7519.1 7519.1.1 a/b three-layered sandwiches ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit 001408413 e3oaaG2 002990734 Q87LA2_nD1 Q87LA2 Q87LA2_VIBPA VP2710 2709 1-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002050385 e3klnA2 002990735 Q87LA2_nD2 Q87LA2 Q87LA2_VIBPA VP2710 2709 141-214 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001824335 e4zmsA2 002990736 Q87ML5_nD1 Q87ML5 Q87ML5_VIBPA VP2216 Cytochrome c-type biogenesis protein 2216 21-95 f a.7 4009 4009.1 4009.1.1 alpha bundles alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins 000164930 e2hl7A1 002990737 Q87HE2_nD3 Q87HE2 Q87HE2_VIBPA VPA1023 sbcD Nuclease SbcCD subunit D 4102 331-375 f a.7 1045 1045.1 1045.1.1 alpha bundles Rad50-binding domain of Mre11 Rad50-binding domain of Mre11 Rad50-binding domain of Mre11 002526946 e6s6vA3 002990738 Q87HE2_nD2 Q87HE2 Q87HE2_VIBPA VPA1023 sbcD Nuclease SbcCD subunit D 4102 271-325 f a.13 3979 3979.1 3979.1.1 a+b four layers Mre11 nuclease C-terminal domain Mre11 nuclease C-terminal domain Mre11 nuclease C-terminal domain 002758206 e7dogB2 002990739 Q87HE2_nD1 Q87HE2 Q87HE2_VIBPA VPA1023 sbcD Nuclease SbcCD subunit D 4102 1-270 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 002758205 e7dogB1 002990740 Q87NN6_nD1 Q87NN6 Q87NN6_VIBPA VP1832 N-acetyltransferase domain-containing protein 1832 1-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000427328 e3tcvB1 002990741 Q87T53_nD1 Q87T53 Q87T53_VIBPA VP0217 217 31-225 f a.1 4200 4200.1 4200.1.1 beta barrels YmcC-like YmcC-like YmcC-like 000002363 e2in5A1 002990742 P65129_nD1 P65129 IF1_VIBPA VP1016 infA Translation initiation factor IF-1 1016 6-70 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000330 e1hr0W1 002990743 Q87GZ3_nD3 Q87GZ3 Q87GZ3_VIBPA VPA1172 LruC domain-containing protein 4251 426-703 f a.3 3342 3342.1 3342.1.1 beta sandwiches C-terminal domain in a putative lipoprotein BACOVA_00967 C-terminal domain in a putative lipoprotein BACOVA_00967 C-terminal domain in a putative lipoprotein BACOVA_00967 000185449 e3oqqA2 002990744 Q87GZ3_nD1 Q87GZ3 Q87GZ3_VIBPA VPA1172 LruC domain-containing protein 4251 21-260 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 001290001 e3nolA1 002990745 Q87GZ3_nD2 Q87GZ3 Q87GZ3_VIBPA VPA1172 LruC domain-containing protein 4251 241-425 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001789286 e5i5kB5 002990746 Q87I88_nD1 Q87I88 Q87I88_VIBPA VPA0718 3797 6-145 f a.7 3457 3457.1 3457.1.1 alpha bundles GxGD membrane protease GxGD membrane protease GxGD membrane protease 000185516 e3s0xA1 002990747 Q87NB6_nD1 Q87NB6 Q87NB6_VIBPA VP1952 Hcalcium-binding protein 1952 6-170 f a.4 207 207.6 207.6.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Serralysin-like metalloprotease-C Serralysin-like metalloprotease-C 001288503 e3p4gB1 002990748 Q87PI1_nD1 Q87PI1 Q87PI1_VIBPA VP1521 Immunity protein 49 of polymorphic toxin system 1521 11-299 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001074392 e4lctD1 002990749 Q87QJ5_nD2 Q87QJ5 Q87QJ5_VIBPA VP1154 1154 91-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002723526 e6yizA1 002990750 Q87QJ5_nD1 Q87QJ5 Q87QJ5_VIBPA VP1154 1154 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002990751 Q87SZ5_nD1 Q87SZ5 RL30_VIBPA VP0275 rpmD 50S ribosomal protein L30 275 1-58 f a.11 887 887.1 887.1.1 a+b two layers Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e 001860014 e5j8aC01 002990752 Q87IR1_nD1 Q87IR1 Q87IR1_VIBPA VPA0545 Peptidyl-prolyl cis-trans isomerase 3624 11-155 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000006488 e1jvwA1 002990753 Q87QJ8_nD1 Q87QJ8 KITH_VIBPA VP1151 tdk Thymidine kinase 1151 1-140 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001636869 e2orwB1 002990754 Q87QJ8_nD2 Q87QJ8 KITH_VIBPA VP1151 tdk Thymidine kinase 1151 141-190 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 000008197 e2b8tA1 002990755 Q87T44_nD1 Q87T44 Q87T44_VIBPA VP0226 226 1-270 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001902972 e4p02A1 002990756 Q87KT9_nD1 Q87KT9 Q87KT9_VIBPA VP2887 2886 1-520 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002814625 e7msmx1 002990757 Q87KT8_nD3 Q87KT8 Q87KT8_VIBPA VP2888 2887 211-385 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002758536 e7a7eB1 002990758 Q87KT8_nD1 Q87KT8 Q87KT8_VIBPA VP2888 2887 21-50 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002990759 Q87KT8_nD2 Q87KT8 Q87KT8_VIBPA VP2888 2887 71-210 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000401536 e3k3cA1 002990760 Q87FW6_nD1 Q87FW6 Q87FW6_VIBPA VPA1562 4641 6-180 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 001212358 e2zcxA6 002990761 Q87FR9_nD1 Q87FR9 Q87FR9_VIBPA VPA1609 4688 6-415 f a.10 5052 5052.1 5052.1.1 alpha complex topology Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein 001887687 e5dwyB1 002990762 Q87QP9_nD2 Q87QP9 Q87QP9_VIBPA VP1100 DNA repair protein 1100 226-250 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001097614 e4kvmB1 002990763 Q87QP9_nD1 Q87QP9 Q87QP9_VIBPA VP1100 DNA repair protein 1100 26-225 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000146681 e2xs1A1 002990764 Q87IK3_nD1 Q87IK3 Q87IK3_VIBPA VPA0603 3682 76-225 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000071753 e2c2iB1 002990765 Q87KT6_nD4 Q87KT6 Q87KT6_VIBPA VP2890 2889 561-710 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 001148276 e3n75A6 002990766 Q87KT6_nD3 Q87KT6 Q87KT6_VIBPA VP2890 2889 416-560 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001148277 e3n75A7 002990767 Q87KT6_nD1 Q87KT6 Q87KT6_VIBPA VP2890 2889 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000142383 e3n75A4 002990768 Q87KT6_nD2 Q87KT6 Q87KT6_VIBPA VP2890 2889 131-415 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001148275 e3n75A5 002990769 Q87HR1_nD1 Q87HR1 Q87HR1_VIBPA VPA0898 DNAase 3977 6-125 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000138564 e3lodA1 002990770 Q87JT4_nD1 Q87JT4 Q87JT4_VIBPA VPA0164 3243 6-285 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 002817087 e7kypF1 002990771 Q87S05_nD1 Q87S05 Q87S05_VIBPA VP0619 619 77-345 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 000322457 e2z38A1 002990772 Q87S05_nD2 Q87S05 Q87S05_VIBPA VP0619 619 26-60,383-420 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 002769954 e7bjtA2 002990773 Q87S05_nD4 Q87S05 Q87S05_VIBPA VP0619 619 526-570 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001240751 e4mb3A8 002990774 Q87S05_nD3 Q87S05 Q87S05_VIBPA VP0619 619 436-470 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 002389402 e5zl9A4 002990775 Q87PX6_nD1 Q87PX6 Q87PX6_VIBPA VP1374 1374 26-485 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002990776 Q87GB1_nD2 Q87GB1 Q87GB1_VIBPA VPA1406 4485 61-120,156-260,391-445 f a.11 304 304.58 304.58.1 a+b two layers Alpha-beta plaits FepE-like FepE-like 000005387 e3b8mA1 002990777 Q87GB1_nD1 Q87GB1 Q87GB1_VIBPA VPA1406 4485 21-60,446-475 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002990778 Q87GB1_nD3 Q87GB1 Q87GB1_VIBPA VPA1406 4485 261-390 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002990779 Q87GB1_nD4 Q87GB1 Q87GB1_VIBPA VPA1406 4485 476-575 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001144375 e4jlvA1 002990780 Q87I75_nD1 Q87I75 Q87I75_VIBPA VPA0731 OmpA-like domain-containing protein 3810 76-185 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 000216283 e3s0yA1 002990781 Q87QV8_nD4 Q87QV8 Q87QV8_VIBPA VP1041 1041 326-460 f a.10 3921 3921.1 3921.1.1 alpha complex topology Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D 001447932 e4p6vD1 002990782 Q87QV8_nD3 Q87QV8 Q87QV8_VIBPA VP1041 1041 6-30,306-325,461-485 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002707029 e7kwsA3 002990783 Q87QV8_nD1 Q87QV8 Q87QV8_VIBPA VP1041 1041 41-115,256-275 f a.3 10 10.20 10.20.1 beta sandwiches jelly-roll Jelly-roll domain in cysteine protease Jelly-roll domain in cysteine protease 001165730 e3isrB1 002990784 Q87QV8_nD2 Q87QV8 Q87QV8_VIBPA VP1041 1041 116-255,276-285 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 000985269 e4fgqA1 002990785 Q87FK4_nD1 Q87FK4 Q87FK4_VIBPA VPA1675 4754 6-235 f a.12 281 281.1 281.1.1 a+b three layers AraD-like aldolase/epimerase AraD-like aldolase/epimerase AraD-like aldolase/epimerase 000078936 e1k0wE1 002990786 Q87J05_nD3 Q87J05 Q87J05_VIBPA VPA0450 IPPc domain-containing protein 3529 371-495 f a.11 310 310.2 310.2.1 a+b two layers RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF 002625677 e6xxvC1 002990787 Q87J05_nD2 Q87J05 Q87J05_VIBPA VPA0450 IPPc domain-containing protein 3529 81-370 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 000141353 e2xswA1 002990788 Q87J05_nD1 Q87J05 Q87J05_VIBPA VPA0450 IPPc domain-containing protein 3529 1-60 f a.4 3761 3761.1 3761.1.1 beta duplicates or obligate multimers Major tropism determinant (Mtd) trimerization domain-related Major tropism determinant (Mtd) trimerization domain-related Major tropism determinant (Mtd) trimerization domain-related 001505156 e3hshB1 002990789 Q87T33_nD1 Q87T33 Q87T33_VIBPA VP0237 UTP--glucose-1-phosphate uridylyltransferase 237 1-285 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 000387506 e3jujC1 002990790 Q87QH8_nD1 Q87QH8 Q87QH8_VIBPA VP1171 1171 66-185 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 001515306 e4qflB1 002990791 Q87QH8_nD2 Q87QH8 Q87QH8_VIBPA VP1171 1171 26-65,186-290,511-539 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002171842 e6epzC3 002990792 Q87QH8_nD3 Q87QH8 Q87QH8_VIBPA VP1171 1171 291-510 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001524199 e4qflB2 002990793 Q87JL4_nD2 Q87JL4 PHNW_VIBPA VPA0235 phnW 2-aminoethylphosphonate--pyruvate transaminase 3314 286-365 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002553605 e6i33A1 002990794 Q87JL4_nD1 Q87JL4 PHNW_VIBPA VPA0235 phnW 2-aminoethylphosphonate--pyruvate transaminase 3314 1-300 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001152736 e1m32F2 002990795 Q87FR3_nD2 Q87FR3 Q87FR3_VIBPA VPA1615 4694 61-235 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001066851 e4gxzA1 002990796 Q87FR3_nD1 Q87FR3 Q87FR3_VIBPA VPA1615 4694 26-60 f a.21 1095 1095.1 1095.1.1 extended segments Copper resistance protein ScsC N-terminal region Copper resistance protein ScsC N-terminal region Copper resistance protein ScsC N-terminal region 002833008 e7rgvA2 002990797 Q87L71_nD1 Q87L71 Q87L71_VIBPA VP2741 rpe Ribulose-phosphate 3-epimerase 2740 1-220 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002833541 e7u5yA1 002990798 Q87JE8_nD1 Q87JE8 CATA_VIBPA VPA0305 Catalase 3384 21-430 f a.1 4028 4028.1 4028.1.1 beta barrels Barrel domain in heme-dependent catalases Barrel domain in heme-dependent catalases Barrel domain in heme-dependent catalases 001710130 e4aj9C4 002990799 Q87JE8_nD2 Q87JE8 CATA_VIBPA VPA0305 Catalase 3384 431-500 f a.7 4048 4048.1 4048.1.1 alpha bundles Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases Second alpha-helical domain in heme-dependent catalases 000054055 e1m7sD3 002990800 Q87QJ0_nD2 Q87QJ0 Q87QJ0_VIBPA VP1159 ABC transporter permease 1159 56-250 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002157278 e5yhfA3 002990801 Q87QJ0_nD1 Q87QJ0 Q87QJ0_VIBPA VP1159 ABC transporter permease 1159 6-55 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002709975 e6m49B1 002990802 Q87S13_nD1 Q87S13 Q87S13_VIBPA VP0611 bamB Outer membrane protein assembly factor BamB 611 26-385 f a.4 5 5.1 5.1.11 beta duplicates or obligate multimers beta-propeller-like beta-propeller 9-bladed 002804721 e7ri4B1 002990803 Q87GX4_nD4 Q87GX4 Q87GX4_VIBPA VPA1191 4270 31-45,296-370 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002990804 Q87GX4_nD3 Q87GX4 Q87GX4_VIBPA VPA1191 4270 46-55,206-295 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002067198 e5ng5E1 002990805 Q87GX4_nD2 Q87GX4 Q87GX4_VIBPA VPA1191 4270 96-165 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002576339 e6qpqC1 002990806 Q87GX4_nD1 Q87GX4 Q87GX4_VIBPA VPA1191 4270 56-95,166-205 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001160273 e2v4dE8 002990807 Q87R20_nD1 Q87R20 LOLD_VIBPA VP0978 lolD Lipoprotein-releasing system ATP-binding protein LolD 978 1-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002990808 Q87R13_nD3 Q87R13 Q87R13_VIBPA VP0985 SpoVR family protein 985 406-445 f 002990809 Q87R13_nD4 Q87R13 Q87R13_VIBPA VP0985 SpoVR family protein 985 446-510 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 001177798 e4dunA3 002990810 Q87R13_nD1 Q87R13 Q87R13_VIBPA VP0985 SpoVR family protein 985 151-190,251-275 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001674770 e5c6gA1 002990811 Q87R13_nD2 Q87R13 Q87R13_VIBPA VP0985 SpoVR family protein 985 21-65,101-150,276-425 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002531168 e5mj6A3 002990812 Q87M62_nD3 Q87M62 Q87M62_VIBPA VP2396 2396 161-295,321-335 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002990813 Q87M62_nD1 Q87M62 Q87M62_VIBPA VP2396 2396 6-50 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002391034 e5yszA1 002990814 Q87M62_nD2 Q87M62 Q87M62_VIBPA VP2396 2396 51-160,296-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002050549 e3mizA1 002990815 Q56704_nD1 Q56704 FLAG_VIBPA VP2257 flaG Protein FlaG 2257 66-140 f a.11 4292 4292.1 4292.1.1 a+b two layers FlaG-like FlaG-related FlaG-related 000005832 e2hc5A1 002990816 Q87GH4_nD1 Q87GH4 Q87GH4_VIBPA VPA1342 4421 126-170 f a.7 1180 1180.1 1180.1.1 alpha bundles Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain 002102658 e5h72B1 002990817 Q87GH4_nD2 Q87GH4 Q87GH4_VIBPA VPA1342 4421 51-105,146-243 f a.10 5061 5061.1 5061.1.1 alpha complex topology Preprotein translocase SecY subunit Preprotein translocase SecY subunit Preprotein translocase SecY subunit 002496808 e6itcY1 002990818 Q87KX5_nD1 Q87KX5 Q87KX5_VIBPA VP2849 Protein MgtC 2848 11-145 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002123527 e5yckA2 002990819 Q87FJ5_nD1 Q87FJ5 Q87FJ5_VIBPA VPA1684 Alkyl hydroperoxide reductase subunit F 4763 1-100 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000116262 e1zynA1 002990820 Q87FJ5_nD2 Q87FJ5 Q87FJ5_VIBPA VPA1684 Alkyl hydroperoxide reductase subunit F 4763 101-205 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001406037 e4o5qA4 002990821 Q87FJ5_nD4 Q87FJ5 Q87FJ5_VIBPA VPA1684 Alkyl hydroperoxide reductase subunit F 4763 326-450 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000009261 e1fl2A2 002990822 Q87FJ5_nD3 Q87FJ5 Q87FJ5_VIBPA VPA1684 Alkyl hydroperoxide reductase subunit F 4763 206-325,451-520 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002990823 Q87QX1_nD1 Q87QX1 Q87QX1_VIBPA VP1028 DNA transformation protein 1028 6-105 f a.11 241 241.7 241.7.1 a+b two layers Type III secretory system chaperone-like YgaC/TfoX-N like YgaC/TfoX-N like 000006639 e2od0A1 002990824 Q87QX1_nD2 Q87QX1 Q87QX1_VIBPA VP1028 DNA transformation protein 1028 116-195 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001837426 e3mabA1 002990825 Q87ST5_nD1 Q87ST5 PDXA_VIBPA VP0337 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 337 6-150,291-330 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002602561 e1yxoB1 002990826 Q87ST5_nD2 Q87ST5 PDXA_VIBPA VP0337 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 337 151-290 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002642689 e6xmyA1 002990827 Q87GW8_nD1 Q87GW8 Q87GW8_VIBPA VPA1197 napF Ferredoxin-type protein NapF 4276 21-90 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000067069 e2fjeB1 002990828 Q87GW8_nD2 Q87GW8 Q87GW8_VIBPA VPA1197 napF Ferredoxin-type protein NapF 4276 91-155 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005481 e1gteA2 002990829 Q87KF5_nD1 Q87KF5 Q87KF5_VIBPA VP3022 3021 6-375 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001497756 e4wcxA1 002990830 Q87J25_nD1 Q87J25 Q87J25_VIBPA VPA0428 Heme utilization cystosolic carrier protein HutX 3507 6-170 f a.15 4216 4216.1 4216.1.1 a+b duplicates or obligate multimers Heme iron utilization protein-like Heme iron utilization protein-like Heme iron utilization protein-like 001866193 e5exvF1 002990831 Q87GM6_nD1 Q87GM6 Q87GM6_VIBPA VPA1289 4368 6-70 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000137589 e3i2zB1 002990832 Q87SB6_nD1 Q87SB6 Q87SB6_VIBPA VP0508 Flavodoxin 508 1-170 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001781118 e2mt9A1 002990833 Q87TE7_nD1 Q87TE7 Q87TE7_VIBPA VP0123 AAA_28 domain-containing protein 123 1-175 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009545 e1p6xA1 002990834 Q87SY2_nD3 Q87SY2 Q87SY2_VIBPA VP0290 290 606-650 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000312412 e2ob0C1 002990835 Q87SY2_nD1 Q87SY2 Q87SY2_VIBPA VP0290 290 26-355 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000136560 e3jyfA1 002990836 Q87SY2_nD2 Q87SY2 Q87SY2_VIBPA VP0290 290 356-600 f a.14 805 805.1 805.1.1 a+b complex topology 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 002530383 e4uwqG1 002990837 Q87HI3_nD1 Q87HI3 Q87HI3_VIBPA VPA0980 FhuF_C domain-containing protein 4059 6-235 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000454285 e2x0qA1 002990838 Q87K88_nD1 Q87K88 Q87K88_VIBPA VPA0010 Pyridoxamine 5-phosphate oxidase 3089 6-65 f a.6 4239 4239.1 4239.1.1 alpha arrays DNA polymerase III theta subunit-like DNA polymerase III theta subunit-like DNA polymerase III theta subunit-like 000048785 e2axdS1 002990839 Q87KX8_nD1 Q87KX8 Q87KX8_VIBPA VP2846 L-lysine 2,3-aminomutase 2845 16-335 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001285951 e2a5hB1 002990840 Q87T06_nD1 Q87T06 RL16_VIBPA VP0264 rplP 50S ribosomal protein L16 264 1-135 f a.14 325 325.1 325.1.5 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e 001955979 e5j8aDN1 002990841 Q87P68_nD1 Q87P68 Q87P68_VIBPA VP1650 CENP-V/GFA domain-containing protein 1650 6-120 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 002645133 e1xa8B1 002990842 Q87NS4_nD1 Q87NS4 Q87NS4_VIBPA VP1794 N-acetyltransferase domain-containing protein 1794 1-180 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001291869 e4hnyD1 002990843 Q87MH1_nD1 Q87MH1 UPP_VIBPA VP2284 upp Uracil phosphoribosyltransferase 2284 1-208 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 002646408 e6wn8H1 002990844 Q87HX9_nD3 Q87HX9 Q87HX9_VIBPA VPA0827 3906 291-365 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001314443 e4qhtC2 002990845 Q87HX9_nD4 Q87HX9 Q87HX9_VIBPA VPA0827 3906 371-415 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000352703 e3e7lD1 002990846 Q87HX9_nD1 Q87HX9 Q87HX9_VIBPA VPA0827 3906 6-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001095677 e4l4uA2 002990847 Q87HX9_nD2 Q87HX9 Q87HX9_VIBPA VPA0827 3906 141-290 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002990848 Q87QD3_nD2 Q87QD3 Q87QD3_VIBPA VP1216 Bcr/CflA family efflux transporter 1216 221-410 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680302 e4zp0A2 002990849 Q87QD3_nD1 Q87QD3 Q87QD3_VIBPA VP1216 Bcr/CflA family efflux transporter 1216 26-215 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680301 e4zp0A1 002990850 Q87QV2_nD1 Q87QV2 SYD_VIBPA VP1047 aspS Aspartate--tRNA ligase 1047 1-110 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000023548 e1c0aA1 002990851 Q87QV2_nD2 Q87QV2 SYD_VIBPA VP1047 aspS Aspartate--tRNA ligase 1047 116-290,421-565 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000079526 e1c0aA3 002990852 Q87QV2_nD3 Q87QV2 SYD_VIBPA VP1047 aspS Aspartate--tRNA ligase 1047 291-420 f a.11 329 329.1 329.1.1 a+b two layers Prokaryotic AspRS, insert domain Prokaryotic AspRS, insert domain Prokaryotic AspRS, insert domain 000005536 e1c0aA2 002990853 Q87GB6_nD2 Q87GB6 Q87GB6_VIBPA VPA1401 Maltodextrin-binding protein 4480 136-280,356-390 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002662555 e4wrnA5 002990854 Q87GB6_nD1 Q87GB6 Q87GB6_VIBPA VPA1401 Maltodextrin-binding protein 4480 26-135,281-355 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002662555 e4wrnA5 002990855 Q87PE6_nD3 Q87PE6 Q87PE6_VIBPA VP1564 ATP-binding protein 1564 406-488 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000165485 e2qbyA2 002990856 Q87PE6_nD1 Q87PE6 Q87PE6_VIBPA VP1564 ATP-binding protein 1564 26-280 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002432503 e6hedI2 002990857 Q87PE6_nD2 Q87PE6 Q87PE6_VIBPA VP1564 ATP-binding protein 1564 1-25,281-405 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002074125 e5v8fD2 002990858 Q87LR1_nD1 Q87LR1 RECA_VIBPA VP2550 recA Protein RecA 2550 6-270 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002576529 e3cmtD11 002990859 Q87LR1_nD2 Q87LR1 RECA_VIBPA VP2550 recA Protein RecA 2550 271-335 f a.11 502 502.1 502.1.1 a+b two layers Anti-LPS factor/recA domain Anti-LPS factor/recA domain Anti-LPS factor/recA domain 002666224 e7jy6C1 002990860 Q87PW5_nD1 Q87PW5 Q87PW5_VIBPA VP1385 Peptidase M23 1385 71-165 f a.11 3953 3953.1 3953.1.1 a+b two layers Csd3 N-terminal domain Csd3 N-terminal domain Csd3 N-terminal domain 002774290 e6ue4B2 002990861 Q87PW5_nD2 Q87PW5 Q87PW5_VIBPA VP1385 Peptidase M23 1385 166-324 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 002774289 e6ue4B1 002990862 Q87QG4_nD3 Q87QG4 Q87QG4_VIBPA VP1185 1185 206-260 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002990863 Q87QG4_nD4 Q87QG4 Q87QG4_VIBPA VP1185 1185 356-430 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 000148495 e3ur1C1 002990864 Q87QG4_nD2 Q87QG4 Q87QG4_VIBPA VP1185 1185 46-175 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 000150489 e3va9A1 002990865 Q87QG4_nD5 Q87QG4 Q87QG4_VIBPA VP1185 1185 261-340,456-530 f 002990866 Q87QG4_nD1 Q87QG4 Q87QG4_VIBPA VP1185 1185 6-45,176-205 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002990867 Q87QG4_nD6 Q87QG4 Q87QG4_VIBPA VP1185 1185 341-355,431-455 f a.14 1042 1042.1 1042.1.1 a+b complex topology S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein 002137927 e6bfuA1 002990868 Q87Q32_nD1 Q87Q32 Q87Q32_VIBPA VP1318 1318 6-215 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002072264 e3vvsA2 002990869 Q87Q32_nD2 Q87Q32 Q87Q32_VIBPA VP1318 1318 231-495 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002473003 e6nc9A2 002990870 Q87GT1_nD2 Q87GT1 Q87GT1_VIBPA VPA1234 4313 61-145 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000334399 e2e7xA2 002990871 Q87GT1_nD1 Q87GT1 Q87GT1_VIBPA VPA1234 4313 1-55 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001168080 e2ia0A3 002990872 Q87FM3_nD2 Q87FM3 Q87FM3_VIBPA VPA1656 4735 51-90,126-710 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001937856 e5fq6D2 002990873 Q87FM3_nD1 Q87FM3 Q87FM3_VIBPA VPA1656 4735 91-125 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001828693 e5fp1A2 002990874 Q87KJ1_nD1 Q87KJ1 CYAY_VIBPA VP2986 cyaY Iron-sulfur cluster assembly protein CyaY 2985 1-104 f a.11 241 241.2 241.2.1 a+b two layers Type III secretory system chaperone-like Frataxin-like Frataxin-like 000006645 e1ew4A1 002990875 Q87T43_nD1 Q87T43 Q87T43_VIBPA VP0227 Glycosyltransferase family 4 protein 227 1-210 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002990876 Q87T43_nD2 Q87T43 Q87T43_VIBPA VP0227 Glycosyltransferase family 4 protein 227 211-380 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001840968 e1xv5A2 002990877 Q87SM7_nD5 Q87SM7 Q87SM7_VIBPA VP0395 395 711-814 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000281323 e1yx3A1 002990878 Q87SM7_nD2 Q87SM7 Q87SM7_VIBPA VP0395 395 161-355 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001117601 e2vl7A1 002990879 Q87SM7_nD1 Q87SM7 Q87SM7_VIBPA VP0395 395 11-160 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001166895 e3h1tA7 002990880 Q87SM7_nD4 Q87SM7 Q87SM7_VIBPA VP0395 395 656-725 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000101019 e1jjvA1 002990881 Q87SM7_nD3 Q87SM7 Q87SM7_VIBPA VP0395 395 356-575,626-655 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001381896 e3h1tA3 002990882 Q87GM8_nD2 Q87GM8 Q87GM8_VIBPA VPA1287 4366 236-304 f a.11 327 327.7 327.7.1 a+b two layers Alpha-lytic protease prodomain-like Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 002658343 e6xpdA2 002990883 Q87GM8_nD1 Q87GM8 Q87GM8_VIBPA VPA1287 4366 11-145,171-235 f a.7 5082 5082.1 5082.1.1 alpha bundles Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like 000152993 e3j1zP2 002990884 Q87FE6_nD3 Q87FE6 Q87FE6_VIBPA VPA1733 Membrane fusion protein (MFP) family protein 4812 51-70,351-455 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002990885 Q87FE6_nD2 Q87FE6 Q87FE6_VIBPA VPA1733 Membrane fusion protein (MFP) family protein 4812 106-315 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002137468 e5nenB1 002990886 Q87FE6_nD1 Q87FE6 Q87FE6_VIBPA VPA1733 Membrane fusion protein (MFP) family protein 4812 71-105,316-350 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 002137466 e5nenA1 002990887 Q87KP3_nD1 Q87KP3 Q87KP3_VIBPA VP2934 2933 16-220 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000366781 e3hsiB2 002990888 Q87KP3_nD2 Q87KP3 Q87KP3_VIBPA VP2934 2933 231-445 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000366780 e3hsiB1 002990889 Q87LN8_nD2 Q87LN8 Q87LN8_VIBPA VP2573 Signal peptidase I 2572 81-299 f a.1 4 4.11 4.11.1 beta barrels SH3 LexA/Signal peptidase LexA/Signal peptidase 002395937 e6b88B1 002990890 Q87LN8_nD1 Q87LN8 Q87LN8_VIBPA VP2573 Signal peptidase I 2572 6-80 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002990891 Q87JY2_nD1 Q87JY2 Q87JY2_VIBPA VPA0116 3195 6-450 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002990892 Q87GY3_nD1 Q87GY3 Q87GY3_VIBPA VPA1182 4261 16-140 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000861740 e4f3lA2 002990893 Q87GY3_nD2 Q87GY3 Q87GY3_VIBPA VPA1182 4261 146-180 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000143628 e3pltA1 002990894 Q87GY3_nD5 Q87GY3 Q87GY3_VIBPA VPA1182 4261 251-300,456-510 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 002546266 e6rw9E1 002990895 Q87GY3_nD3 Q87GY3 Q87GY3_VIBPA VPA1182 4261 181-245 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 000997502 e4i44A1 002990896 Q87GY3_nD4 Q87GY3 Q87GY3_VIBPA VPA1182 4261 301-455 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002990897 Q87K63_nD1 Q87K63 Q87K63_VIBPA VPA0035 gltS Sodium/glutamate symporter 3114 6-405 f a.10 3236 3236.2 3236.2.1 alpha complex topology Cation-proton antiporter Sodium-dependent citrate symporter Sodium-dependent citrate symporter 001759948 e5a1sD1 002990898 Q87QI1_nD1 Q87QI1 Q87QI1_VIBPA VP1168 1168 1-325 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002990899 Q87N32_nD1 Q87N32 Q87N32_VIBPA VP2043 Transporter 2043 1-485 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 001551987 e4xp9C1 002990900 Q87QH7_nD2 Q87QH7 Q87QH7_VIBPA VP1172 1172 1-10,176-260 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001320172 e4qosA1 002990901 Q87QH7_nD1 Q87QH7 Q87QH7_VIBPA VP1172 1172 11-175 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002598028 e6lufB2 002990902 Q87QH7_nD3 Q87QH7 Q87QH7_VIBPA VP1172 1172 276-330 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002990903 Q87LM9_nD1 Q87LM9 SDHE_VIBPA VP2582 sdhE FAD assembly factor SdhE 2581 1-85 f a.6 516 516.1 516.1.1 alpha arrays YgfY-like (DUP399, Pfam03937) YgfY-like (DUP399, Pfam03937) YgfY-like (DUP399, Pfam03937) 000003225 e1puzA1 002990904 Q87LH3_nD1 Q87LH3 Q87LH3_VIBPA VP2639 3-dehydrosphinganine reductase 2638 1-220 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000360959 e3guyG1 002990905 Q87NS0_nD2 Q87NS0 Q87NS0_VIBPA VP1798 VOC domain-containing protein 1798 56-115 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001395094 e2rbbA3 002990906 Q87NS0_nD1 Q87NS0 Q87NS0_VIBPA VP1798 VOC domain-containing protein 1798 6-55 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000355357 e3ey7A2 002990907 Q87FS1_nD3 Q87FS1 Q87FS1_VIBPA VPA1607 4686 166-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002990908 Q87FS1_nD2 Q87FS1 Q87FS1_VIBPA VPA1607 4686 86-165,266-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002990909 Q87FS1_nD1 Q87FS1 Q87FS1_VIBPA VPA1607 4686 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002990910 Q87S69_nD2 Q87S69 Q87S69_VIBPA VP0555 Bifunctional chorismate mutase/prephenate dehydratase 555 96-190,281-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002574387 e6vh5D2 002990911 Q87S69_nD1 Q87S69 Q87S69_VIBPA VP0555 Bifunctional chorismate mutase/prephenate dehydratase 555 11-95 f a.7 164 164.1 164.1.1 alpha bundles Chorismate mutase II Chorismate mutase II Chorismate mutase II 000004049 e1ecmA1 002990912 Q87S69_nD3 Q87S69 Q87S69_VIBPA VP0555 Bifunctional chorismate mutase/prephenate dehydratase 555 191-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002574388 e6vh5D3 002990913 Q87S69_nD4 Q87S69 Q87S69_VIBPA VP0555 Bifunctional chorismate mutase/prephenate dehydratase 555 296-390 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 002575510 e6vh5A2 002990914 Q87MQ5_nD1 Q87MQ5 AQPZ_VIBPA VP2176 aqpZ Aquaporin Z 2176 1-225 f a.10 5048 5048.1 5048.1.1 alpha complex topology Aquaporin-like Aquaporin-like Aquaporin-like 000314823 e2o9gA1 002990915 Q87G82_nD2 Q87G82 Q87G82_VIBPA VPA1435 4514 36-45,161-695 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002534564 e6i96A1 002990916 Q87G82_nD1 Q87G82 Q87G82_VIBPA VPA1435 4514 46-160 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 002534565 e6i96A2 002990917 Q87R90_nD4 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 461-620 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001296148 e4ci7B2 002990918 Q87R90_nD3 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 316-460 f a.5 5090 5090.2 5090.2.1 beta complex topology Viral glycoprotein, central and dimerisation domains-like Immune inhibitor A metallopeptidase C-terminal domain Immune inhibitor A metallopeptidase C-terminal domain 001699702 e4yu6A3 002990919 Q87R90_nD7 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 811-900 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001018750 e4aqoA1 002990920 Q87R90_nD5 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 626-715 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001299253 e4m02A1 002990921 Q87R90_nD2 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 81-315 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001699700 e4yu6A1 002990922 Q87R90_nD1 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 1-30 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001498746 e3cihA2 002990923 Q87R90_nD6 Q87R90 Q87R90_VIBPA VP0907 PKD domain-containing protein 907 716-810 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000140774 e2l04A1 002990924 Q87H67_nD1 Q87H67 Q87H67_VIBPA VPA1098 DUF2804 domain-containing protein 4177 56-215 f a.1 4252 4252.1 4252.1.1 beta barrels AttH-like AttH-like AttH-like 000000901 e2ichA1 002990925 Q87H67_nD2 Q87H67 Q87H67_VIBPA VPA1098 DUF2804 domain-containing protein 4177 16-55,216-340 f a.1 4252 4252.1 4252.1.1 beta barrels AttH-like AttH-like AttH-like 002771633 e7a0tB2 002990926 Q87JD5_nD1 Q87JD5 Q87JD5_VIBPA VPA0318 3397 21-258 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002990927 Q87Q81_nD1 Q87Q81 Q87Q81_VIBPA VP1269 Chemotaxis protein CheX 1269 6-179 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 000081557 e1xkoB1 002990928 Q87GA7_nD1 Q87GA7 Q87GA7_VIBPA VPA1410 Capsular biosynthesis protein 4489 1-270 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000101159 e1q1qA1 002990929 Q87IV3_nD1 Q87IV3 Q87IV3_VIBPA VPA0503 3582 6-40,61-170 f a.7 3931 3931.1 3931.1.1 alpha bundles MtlR-like MtlR-like MtlR-like 002541711 e6kcrA1 002990930 Q87LK6_nD2 Q87LK6 METK_VIBPA VP2606 metK S-adenosylmethionine synthase 2605 126-235 f a.11 327 327.17 327.17.1 a+b two layers Alpha-lytic protease prodomain-like S-adenosylmethionine synthetase S-adenosylmethionine synthetase 001952813 e5h9uC2 002990931 Q87LK6_nD1 Q87LK6 METK_VIBPA VP2606 metK S-adenosylmethionine synthase 2605 11-120 f a.11 327 327.17 327.17.1 a+b two layers Alpha-lytic protease prodomain-like S-adenosylmethionine synthetase S-adenosylmethionine synthetase 001286287 e4l2zA1 002990932 Q87LK6_nD3 Q87LK6 METK_VIBPA VP2606 metK S-adenosylmethionine synthase 2605 241-380 f a.11 327 327.17 327.17.1 a+b two layers Alpha-lytic protease prodomain-like S-adenosylmethionine synthetase S-adenosylmethionine synthetase 002578272 e6s81B1 002990933 Q87HZ7_nD6 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 706-795 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002816514 e7cz9B1 002990934 Q87HZ7_nD8 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 501-550,861-1015 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002990935 Q87HZ7_nD5 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 551-660 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001679995 e4y0lA1 002990936 Q87HZ7_nD2 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 181-265 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002990937 Q87HZ7_nD7 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 661-705,796-860 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002990938 Q87HZ7_nD1 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 41-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002672273 e6vejC1 002990939 Q87HZ7_nD4 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 1-40,326-500 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002502613 e6owsA7 002990940 Q87HZ7_nD3 Q87HZ7 Q87HZ7_VIBPA VPA0809 3888 136-180,271-325 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001312384 e4k0eA3 002990941 Q87RG8_nD1 Q87RG8 Q87RG8_VIBPA VP0828 828 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001905866 e5f7qJ2 002990942 Q87RG8_nD2 Q87RG8 Q87RG8_VIBPA VP0828 828 81-205,381-395 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001123736 e4bgaC1 002990943 Q87RG8_nD3 Q87RG8 Q87RG8_VIBPA VP0828 828 206-380 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011225 e1z05A2 002990944 Q87SQ8_nD2 Q87SQ8 Q87SQ8_VIBPA VP0364 364 181-245,266-350 f a.12 301 301.13 301.13.1 a+b three layers Bacillus chorismate mutase-like DAK1/DegV C-terminal domain DAK1/DegV C-terminal domain 001937195 e4lrxB2 002990945 Q87SQ8_nD1 Q87SQ8 Q87SQ8_VIBPA VP0364 364 6-180 f a.17 2010 2010.1 2010.1.1 a/b three-layered sandwiches EDD domain EDD domain EDD domain 001937175 e2iu6B2 002990946 Q87FK5_nD2 Q87FK5 ARAB_VIBPA VPA1674 araB Ribulokinase 4753 291-565 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001881748 e3qdkD2 002990947 Q87FK5_nD1 Q87FK5 ARAB_VIBPA VPA1674 araB Ribulokinase 4753 11-290 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001881747 e3qdkD1 002990948 Q87PV2_nD2 Q87PV2 Q87PV2_VIBPA VP1399 3-oxoacyl-ACP synthase 1399 201-314 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000113119 e1tqyF2 002990949 Q87PV2_nD1 Q87PV2 Q87PV2_VIBPA VP1399 3-oxoacyl-ACP synthase 1399 6-200 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002595481 e6ql5C5 002990950 Q87Q15_nD1 Q87Q15 Q87Q15_VIBPA VP1335 1335 1-300 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000143677 e3si9A1 002990951 Q87T03_nD1 Q87T03 RL14_VIBPA VP0267 rplN 50S ribosomal protein L14 267 1-123 f a.1 3174 3174.1 3174.1.1 beta barrels Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related 001860041 e5j8aDL1 002990952 Q87FW2_nD1 Q87FW2 Q87FW2_VIBPA VPA1566 4645 1-250,276-360 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001731289 e4xqcA1 002990953 Q87I40_nD2 Q87I40 Q87I40_VIBPA VPA0765 3845 101-513 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001686756 e2vdcE4 002990954 Q87I40_nD1 Q87I40 Q87I40_VIBPA VPA0765 3845 1-85 f a.19 3087 3087.1 3087.1.3 few secondary structure elements CDGSH iron-sulfur domains CDGSH iron-sulfur domains Type 5 and 6 002148855 e6avjC1 002990955 Q87TH2_nD3 Q87TH2 UBIB_VIBPA VP0097 ubiB Probable protein kinase UbiB 97 481-544 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 001236682 e3pwfB3 002990956 Q87TH2_nD2 Q87TH2 UBIB_VIBPA VP0097 ubiB Probable protein kinase UbiB 97 6-15,51-460 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001447936 e4pedA1 002990957 Q87TH2_nD1 Q87TH2 UBIB_VIBPA VP0097 ubiB Probable protein kinase UbiB 97 16-50 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 002464228 e6ctzA1 002990958 Q87HX8_nD1 Q87HX8 Q87HX8_VIBPA VPA0828 Lysoplasmalogenase 3907 16-218 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002429673 e6g7oA2 002990959 Q87Q74_nD1 Q87Q74 HUTI_VIBPA VP1276 hutI Imidazolonepropionase 1276 1-70 f a.3 65 65.1 65.1.1 beta sandwiches Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 002516870 e6oh9A3 002990960 Q87Q74_nD2 Q87Q74 HUTI_VIBPA VP1276 hutI Imidazolonepropionase 1276 71-415 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000095844 e2puzB2 002990961 Q87JL5_nD1 Q87JL5 Q87JL5_VIBPA VPA0234 3313 6-385 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002553202 e6s54A2 002990962 Q87JL5_nD2 Q87JL5 Q87JL5_VIBPA VPA0234 3313 371-455 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001821917 e4ysnB2 002990963 Q87GT5_nD2 Q87GT5 Q87GT5_VIBPA VPA1230 Glyceraldehyde-3-phosphate dehydrogenase 4309 126-290,451-470 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002485123 e6ghlD1 002990964 Q87GT5_nD1 Q87GT5 Q87GT5_VIBPA VPA1230 Glyceraldehyde-3-phosphate dehydrogenase 4309 6-120 f a.17 2007 2007.1 2007.1.6 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Aminoacid dehydrogenase-like, N-terminal domain 000278012 e1wxdB2 002990965 Q87GT5_nD3 Q87GT5 Q87GT5_VIBPA VPA1230 Glyceraldehyde-3-phosphate dehydrogenase 4309 291-320,341-450 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000077172 e1hdgQ1 002990966 Q87GV9_nD1 Q87GV9 Q87GV9_VIBPA VPA1206 LysE family translocator 4285 1-205 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 001838816 e2n4xA1 002990967 Q87GK8_nD2 Q87GK8 Q87GK8_VIBPA VPA1307 4386 191-315 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002051255 e3zk8A1 002990968 Q87GK8_nD1 Q87GK8 Q87GK8_VIBPA VPA1307 4386 36-190 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050614 e4nnoA2 002990969 Q87N19_nD1 Q87N19 PLSX_VIBPA VP2057 plsX Phosphate acyltransferase 2057 1-125,296-335 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002607074 e6a1kA2 002990970 Q87N19_nD2 Q87N19 PLSX_VIBPA VP2057 plsX Phosphate acyltransferase 2057 126-295 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002808387 e7vg9C1 002990971 Q87R61_nD2 Q87R61 Q87R61_VIBPA VP0937 PlsC domain-containing protein 937 216-435 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002728876 e7dl9B1 002990972 Q87R61_nD1 Q87R61 Q87R61_VIBPA VP0937 PlsC domain-containing protein 937 6-215 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001566580 e4w6vA2 002990973 Q87R61_nD3 Q87R61 Q87R61_VIBPA VP0937 PlsC domain-containing protein 937 436-624 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 002603310 e5kymA1 002990974 Q87QX9_nD1 Q87QX9 AROA_VIBPA VP1020 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1020 21-240 f a.11 328 328.6 328.6.1 a+b two layers IF3-like EPT/RTPC-like EPT/RTPC-like 001853535 e3ti2D1 002990975 Q87QX9_nD2 Q87QX9 AROA_VIBPA VP1020 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 1020 1-20,241-425 f a.11 328 328.6 328.6.1 a+b two layers IF3-like EPT/RTPC-like EPT/RTPC-like 001853123 e2qftA1 002990976 Q87RX8_nD2 Q87RX8 Q87RX8_VIBPA VP0648 DNA repair protein RecN 648 1-185,336-554 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000154357 e4abyB1 002990977 Q87RX8_nD1 Q87RX8 Q87RX8_VIBPA VP0648 DNA repair protein RecN 648 186-335 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 002642070 e6zffA1 002990978 Q87RG7_nD1 Q87RG7 Q87RG7_VIBPA VP0829 829 1-55,346-378 f a.3 65 65.1 65.1.1 beta sandwiches Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 002591698 e6jkuB1 002990979 Q87RG7_nD2 Q87RG7 Q87RG7_VIBPA VP0829 829 56-345 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000095773 e2p53B2 002990980 Q87G71_nD2 Q87G71 Q87G71_VIBPA VPA1446 4525 151-218 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001824335 e4zmsA2 002990981 Q87G71_nD1 Q87G71 Q87G71_VIBPA VPA1446 4525 11-150 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002050385 e3klnA2 002990982 Q87P67_nD1 Q87P67 Q87P67_VIBPA VP1651 1651 26-120,251-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001525547 e2qpqC2 002990983 Q87P67_nD2 Q87P67 Q87P67_VIBPA VP1651 1651 121-250 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002990984 Q87M33_nD1 Q87M33 Q87M33_VIBPA VP2425 2425 11-180 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002148238 e5u29C3 002990985 Q87M33_nD2 Q87M33 Q87M33_VIBPA VP2425 2425 181-290,311-440 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002990986 Q87M33_nD3 Q87M33 Q87M33_VIBPA VP2425 2425 441-565 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002088406 e5mstB4 002990987 Q87K65_nD1 Q87K65 Q87K65_VIBPA VPA0033 3112 1-220,271-280 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002990988 Q87K65_nD2 Q87K65 Q87K65_VIBPA VPA0033 3112 221-270 f a.11 304 304.163 304.163.1 a+b two layers Alpha-beta plaits ATP-binding protein TM_1403 insertion domain ATP-binding protein TM_1403 insertion domain 001513013 e4yerA2 002990989 Q87PV0_nD2 Q87PV0 Q87PV0_VIBPA VP1401 ImpA_N domain-containing protein 1401 241-395 f a.9 109 109.51 109.51.1 alpha superhelices Repetitive alpha hairpins TssA helical domains TssA helical domains 002440853 e6g7cC2 002990990 Q87PV0_nD1 Q87PV0 Q87PV0_VIBPA VP1401 ImpA_N domain-containing protein 1401 6-180 f a.9 109 109.51 109.51.1 alpha superhelices Repetitive alpha hairpins TssA helical domains TssA helical domains 002491401 e6hs5A1 002990991 Q87PV0_nD3 Q87PV0 Q87PV0_VIBPA VP1401 ImpA_N domain-containing protein 1401 411-524 f a.9 109 109.51 109.51.1 alpha superhelices Repetitive alpha hairpins TssA helical domains TssA helical domains 001780867 e4yo5K1 002990992 Q87M23_nD3 Q87M23 TYPH_VIBPA VP2435 deoA Thymidine phosphorylase 2435 336-435 f a.14 325 325.1 325.1.3 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain 000235761 e4eadA2 002990993 Q87M23_nD2 Q87M23 TYPH_VIBPA VP2435 deoA Thymidine phosphorylase 2435 71-335 f a.17 7544 7544.1 7544.1.1 a/b three-layered sandwiches Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 000235762 e4eadA3 002990994 Q87M23_nD1 Q87M23 TYPH_VIBPA VP2435 deoA Thymidine phosphorylase 2435 1-70 f a.6 184 184.1 184.1.1 alpha arrays Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N 000135485 e2wk5A1 002990995 Q87R05_nD1 Q87R05 Q87R05_VIBPA VP0993 DUF2219 domain-containing protein 993 21-328 f a.1 5084 5084.9 5084.9.1 beta barrels Outer membrane meander beta-barrels Lipid A deacylase LpxR Lipid A deacylase LpxR 000357342 e3fidB1 002990996 Q87NV8_nD1 Q87NV8 Q87NV8_VIBPA VP1760 1760 6-180 f a.14 868 868.1 868.1.1 a+b complex topology mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related 000085717 e2acaB1 002990997 Q87JM6_nD1 Q87JM6 Q87JM6_VIBPA VPA0222 3301 31-85,131-215,246-453 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 000420253 e3pgsA1 002990998 Q87T94_nD3 Q87T94 Q87T94_VIBPA VP0176 176 146-195,216-288 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 000154438 e2lemA1 002990999 Q87T94_nD2 Q87T94 Q87T94_VIBPA VP0176 176 81-120 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002488235 e4wbdA1 002991000 Q87T94_nD1 Q87T94 Q87T94_VIBPA VP0176 176 6-70,126-145 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000006035 e1rhyA1 002991001 Q87NE5_nD2 Q87NE5 Q87NE5_VIBPA VP1923 Formate-dependent nitrite reductase complex subunit 1923 106-130 f a.21 5019 5019.1 5019.1.1 extended segments Subunit III of photosystem I reaction centre, PsaF Subunit III of photosystem I reaction centre, PsaF Subunit III of photosystem I reaction centre, PsaF 002630259 e6l4uF1 002991002 Q87NE5_nD1 Q87NE5 Q87NE5_VIBPA VP1923 Formate-dependent nitrite reductase complex subunit 1923 31-105 f a.7 4009 4009.1 4009.1.1 alpha bundles alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins 000164930 e2hl7A1 002991003 Q87T87_nD3 Q87T87 Q87T87_VIBPA VP0183 183 221-280 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002991004 Q87T87_nD4 Q87T87 Q87T87_VIBPA VP0183 183 386-450 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 002546266 e6rw9E1 002991005 Q87T87_nD1 Q87T87 Q87T87_VIBPA VP0183 183 6-35,201-220 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002991006 Q87T87_nD2 Q87T87 Q87T87_VIBPA VP0183 183 36-185 f a.12 3488 3488.1 3488.1.1 a+b three layers Putative sensor histidine kinase domain Putative sensor histidine kinase domain Putative sensor histidine kinase domain 001506242 e2qhkA1 002991007 Q87T87_nD5 Q87T87 Q87T87_VIBPA VP0183 183 281-385,451-555 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002991008 Q87SM1_nD1 Q87SM1 Q87SM1_VIBPA VP0401 Non-specific serine/threonine protein kinase 401 1-260,501-529 f a.11 320 320.4 320.4.1 a+b two layers R3H domain-like PUB domain PUB domain 001843714 e5b5rA2 002991009 Q87SM1_nD2 Q87SM1 Q87SM1_VIBPA VP0401 Non-specific serine/threonine protein kinase 401 261-500 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001721531 e2ewfA4 002991010 Q87JL7_nD3 Q87JL7 Q87JL7_VIBPA VPA0232 3311 171-300,331-340 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002991011 Q87JL7_nD2 Q87JL7 Q87JL7_VIBPA VPA0232 3311 61-170,301-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002050631 e2o20B1 002991012 Q87JL7_nD1 Q87JL7 Q87JL7_VIBPA VPA0232 3311 1-60 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002391034 e5yszA1 002991013 Q87P49_nD1 Q87P49 Q87P49_VIBPA VP1669 1669 6-153 f a.7 3755 3755.1 3755.1.1 alpha bundles YscO-like Putative type III secretion protein YscO-related Putative type III secretion protein YscO-related 001097271 e4mh6A1 002991014 Q87QF9_nD4 Q87QF9 Q87QF9_VIBPA VP1190 1190 451-509 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002991015 Q87QF9_nD3 Q87QF9 Q87QF9_VIBPA VP1190 1190 366-450 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002060239 e5m7oA3 002991016 Q87QF9_nD2 Q87QF9 Q87QF9_VIBPA VP1190 1190 191-365 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001160040 e1ojlD4 002991017 Q87QF9_nD1 Q87QF9 Q87QF9_VIBPA VP1190 1190 6-170 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001534102 e3lfvA1 002991018 Q87M10_nD1 Q87M10 Q87M10_VIBPA VP2448 ubiV Ubiquinone biosynthesis protein UbiV 2448 6-295 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002433255 e6ncsB1 002991019 Q87PH1_nD1 Q87PH1 Q87PH1_VIBPA VP1531 1531 68-275 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 000357230 e2zycA1 002991020 Q87HA8_nD1 Q87HA8 Q87HA8_VIBPA VPA1057 4136 6-60,91-305 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002991021 Q87N20_nD1 Q87N20 FABH1_VIBPA VP2056 fabH1 Beta-ketoacyl-[acyl-carrier-protein] synthase III 1 2056 1-175 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000147966 e4dfeA1 002991022 Q87N20_nD2 Q87N20 FABH1_VIBPA VP2056 fabH1 Beta-ketoacyl-[acyl-carrier-protein] synthase III 1 2056 176-315 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000113218 e2gyoA2 002991023 Q87NI9_nD1 Q87NI9 Q87NI9_VIBPA VP1879 1879 12-415 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002803887 e7qiaA1 002991024 Q87H20_nD1 Q87H20 Q87H20_VIBPA VPA1145 Lipoprotein 4224 26-90 f a.7 6028 6028.1 6028.1.1 alpha bundles Ribosome modulation factor Ribosome modulation factor Ribosome modulation factor 000184677 e2jrmA1 002991025 Q87H20_nD2 Q87H20 Q87H20_VIBPA VPA1145 Lipoprotein 4224 91-120 f a.7 5064 5064.1 5064.1.1 alpha bundles Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL 002162349 e5oy0L1 002991026 Q87PR5_nD1 Q87PR5 Q87PR5_VIBPA VP1436 3-methyladenine DNA glycosylase 1436 16-235 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 001558901 e4unfA1 002991027 Q87QU0_nD3 Q87QU0 Q87QU0_VIBPA VP1059 1059 161-205 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 001902753 e4o9yD7 002991028 Q87QU0_nD4 Q87QU0 Q87QU0_VIBPA VP1059 1059 251-355 f a.11 272 272.1 272.1.1 a+b two layers TolA/TonB C-terminal domain TolA/TonB C-terminal domain TolA/TonB C-terminal domain 000152223 e4g7xB1 002991029 Q87QU0_nD1 Q87QU0 Q87QU0_VIBPA VP1059 1059 101-155 f a.21 3967 3967.1 3967.1.1 extended segments Mitoribosomal protein mS26 Mitoribosomal protein mS26 Mitoribosomal protein mS26 001551339 e5aj4Ad1 002991030 Q87QU0_nD2 Q87QU0 Q87QU0_VIBPA VP1059 1059 51-100,206-250 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002991031 Q87MM2_nD1 Q87MM2 FADI_VIBPA VP2209 fadI 3-ketoacyl-CoA thiolase 2209 6-435 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002407215 e5xyjB1 002991032 Q87J94_nD2 Q87J94 Q87J94_VIBPA VPA0359 HTH cro/C1-type domain-containing protein 3438 96-255 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001176028 e2hv2C4 002991033 Q87J94_nD1 Q87J94 Q87J94_VIBPA VPA0359 HTH cro/C1-type domain-containing protein 3438 1-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000002789 e1x57A1 002991034 Q87NL5_nD2 Q87NL5 Q87NL5_VIBPA VP1853 Hypoth_Ymh domain-containing protein 1853 131-265 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000161437 e2hsbA1 002991035 Q87NL5_nD1 Q87NL5 Q87NL5_VIBPA VP1853 Hypoth_Ymh domain-containing protein 1853 6-120 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002717403 e6xssD1 002991036 Q87G80_nD2 Q87G80 Q87G80_VIBPA VPA1437 4516 171-305 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002051705 e5ggyN2 002991037 Q87G80_nD1 Q87G80 Q87G80_VIBPA VPA1437 4516 31-170 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002102104 e6allB1 002991038 Q87PS3_nD1 Q87PS3 Q87PS3_VIBPA VP1428 DUF3847 domain-containing protein 1428 6-30 f a.7 192 192.19 192.19.1 alpha bundles Long alpha-hairpin YnzC-like YnzC-like 000166486 e3bhpA1 002991039 Q87SN3_nD1 Q87SN3 Q87SN3_VIBPA VP0389 Group-specific protein 389 1-35 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002794632 e7eu1L1 002991040 Q87SN3_nD2 Q87SN3 Q87SN3_VIBPA VP0389 Group-specific protein 389 66-130 f a.6 103 103.9 103.9.1 alpha arrays RuvA-C RanGAP2 N-terminal domain RanGAP2 N-terminal domain 001117799 e4m70B1 002991041 Q87I95_nD1 Q87I95 Q87I95_VIBPA VPA0711 3790 1-320 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002772809 e3kkiA2 002991042 Q87I95_nD2 Q87I95 Q87I95_VIBPA VPA0711 3790 321-393 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002807873 e7v58A2 002991043 Q87FD1_nD1 Q87FD1 Q87FD1_VIBPA VPA1748 4827 1-215 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 002540225 e6pxaI1 002991044 Q87GX6_nD3 Q87GX6 Q87GX6_VIBPA VPA1189 4268 131-190 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002991045 Q87GX6_nD4 Q87GX6 Q87GX6_VIBPA VPA1189 4268 251-310 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002991046 Q87GX6_nD2 Q87GX6 Q87GX6_VIBPA VPA1189 4268 1-25,216-250 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002991047 Q87GX6_nD5 Q87GX6 Q87GX6_VIBPA VPA1189 4268 361-530 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002991048 Q87GX6_nD6 Q87GX6 Q87GX6_VIBPA VPA1189 4268 311-360,531-585 f 002991049 Q87GX6_nD1 Q87GX6 Q87GX6_VIBPA VPA1189 4268 26-130,191-215 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002324029 e5xsjL1 002991050 Q87NS6_nD1 Q87NS6 Q87NS6_VIBPA VP1792 Phage protein 1792 16-135 f a.11 3012 3012.1 3012.1.1 a+b two layers Cof C2 cap domain Cof C2 cap domain Cof C2 cap domain 002076029 e3pgvA2 002991051 Q87FR7_nD2 Q87FR7 Q87FR7_VIBPA VPA1611 4690 176-290 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 000065327 e1cg2D1 002991052 Q87FR7_nD1 Q87FR7 Q87FR7_VIBPA VPA1611 4690 1-175,291-374 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 000105707 e1cg2D2 002991053 Q87KE9_nD1 Q87KE9 CRCB_VIBPA VP3028 crcB Putative fluoride ion transporter CrcB 3027 6-125 f a.10 1002 1002.1 1002.1.1 alpha complex topology Fluoride ion channel Fluoride ion channel Fluoride ion channel 002163984 e6bqoB1 002991054 Q87L53_nD1 Q87L53 Q87L53_VIBPA VP2762 Transcriptional regulator 2761 1-175 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002708 e1yg2A1 002991055 Q87HL8_nD1 Q87HL8 Q87HL8_VIBPA VPA0945 Transporter 4024 6-65 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002583345 e6jizC1 002991056 Q87HL8_nD2 Q87HL8 Q87HL8_VIBPA VPA0945 Transporter 4024 86-140 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001182380 e1qz2B4 002991057 Q87TA9_nD1 Q87TA9 KGUA_VIBPA VP0161 gmk Guanylate kinase 161 1-205 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002785684 e7s5eH1 002991058 Q87PG3_nD2 Q87PG3 Q87PG3_VIBPA VP1539 1539 71-160 f a.11 304 304.3 304.3.1 a+b two layers Alpha-beta plaits HMA-related HMA, heavy metal-associated domain 000159348 e1yjrA1 002991059 Q87PG3_nD5 Q87PG3 Q87PG3_VIBPA VP1539 1539 511-615 f a.14 267 267.1 267.1.1 a+b complex topology Metal cation-transporting ATPase, ATP-binding domain Metal cation-transporting ATPase, ATP-binding domain Metal cation-transporting ATPase, ATP-binding domain 001324287 e4umwA2 002991060 Q87PG3_nD1 Q87PG3 Q87PG3_VIBPA VP1539 1539 1-55 f a.19 386 386.1 386.1.1 few secondary structure elements beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 001781124 e2nabA1 002991061 Q87PG3_nD6 Q87PG3 Q87PG3_VIBPA VP1539 1539 481-510,616-720 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001137277 e4bbjA4 002991062 Q87PG3_nD3 Q87PG3 Q87PG3_VIBPA VP1539 1539 301-405 f a.3 10 10.13 10.13.1 beta sandwiches jelly-roll Calcium ATPase, transduction domain A Calcium ATPase, transduction domain A 000161661 e2hc8A1 002991063 Q87PG3_nD4 Q87PG3 Q87PG3_VIBPA VP1539 1539 166-300,411-480,721-785 f a.7 5073 5073.1 5073.1.2 alpha bundles Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain-related Copper efflux ATPase transmembrane domain 001137274 e4bbjA1 002991064 Q87TP0_nD2 Q87TP0 FADA_VIBPA VP0029 fadA 3-ketoacyl-CoA thiolase 29 266-390 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000112825 e1wdkC1 002991065 Q87TP0_nD1 Q87TP0 FADA_VIBPA VP0029 fadA 3-ketoacyl-CoA thiolase 29 6-265 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000010875 e1wdkC2 002991066 Q87QG2_nD1 Q87QG2 Q87QG2_VIBPA VP1187 Methyltrans_SAM domain-containing protein 1187 1-310 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000869288 e3vseA2 002991067 Q87LR2_nD3 Q87LR2 RECX_VIBPA VP2549 recX Regulatory protein RecX 2549 106-150 f a.6 101 101.35 101.35.1 alpha arrays HTH DNA repair regulatory protein RecX DNA repair regulatory protein RecX 001068634 e3dfgA3 002991068 Q87LR2_nD1 Q87LR2 RECX_VIBPA VP2549 recX Regulatory protein RecX 2549 11-60 f a.6 101 101.35 101.35.1 alpha arrays HTH DNA repair regulatory protein RecX DNA repair regulatory protein RecX 001068632 e3dfgA1 002991069 Q87LR2_nD2 Q87LR2 RECX_VIBPA VP2549 recX Regulatory protein RecX 2549 61-105 f a.6 101 101.35 101.35.1 alpha arrays HTH DNA repair regulatory protein RecX DNA repair regulatory protein RecX 001068633 e3dfgA2 002991070 Q87MY0_nD1 Q87MY0 MOAA_VIBPA VP2096 moaA GTP 3',8-cyclase 2096 11-330 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008660 e1tv8A1 002991071 Q87HZ3_nD1 Q87HZ3 Q87HZ3_VIBPA VPA0813 Multiphosphoryl transfer protein 3892 1-145 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000079435 e1a3aC1 002991072 Q87HZ3_nD2 Q87HZ3 Q87HZ3_VIBPA VPA0813 Multiphosphoryl transfer protein 3892 146-275 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000079435 e1a3aC1 002991073 Q87HZ3_nD3 Q87HZ3 Q87HZ3_VIBPA VPA0813 Multiphosphoryl transfer protein 3892 286-375 f a.11 322 322.1 322.1.1 a+b two layers HPr-like HPr-like HPr-like 000407943 e3le3B1 002991074 Q87FS6_nD4 Q87FS6 Q87FS6_VIBPA VPA1602 4681 341-370 f a.21 6017 6017.1 6017.1.1 extended segments Transmembrane helix of outer membrane lipoprotein Wza Transmembrane helix of outer membrane lipoprotein Wza Transmembrane helix of outer membrane lipoprotein Wza 001393164 e2j58E3 002991075 Q87FS6_nD3 Q87FS6 Q87FS6_VIBPA VPA1602 4681 46-65,251-340 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393165 e2j58E4 002991076 Q87FS6_nD2 Q87FS6 Q87FS6_VIBPA VPA1602 4681 66-85,166-250 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002991077 Q87FS6_nD1 Q87FS6 Q87FS6_VIBPA VPA1602 4681 86-165 f a.11 6016 6016.1 6016.1.1 a+b two layers Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza 001393163 e2j58E2 002991078 Q87MZ4_nD1 Q87MZ4 ACKA1_VIBPA VP2082 ackA1 Acetate kinase 1 2082 1-195 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001149669 e3slcA3 002991079 Q87MZ4_nD2 Q87MZ4 ACKA1_VIBPA VP2082 ackA1 Acetate kinase 1 2082 196-395 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000115586 e1x3mA2 002991080 Q87L85_nD1 Q87L85 DUSA_VIBPA VP2727 dusA tRNA-dihydrouridine(20/20a) synthase 2726 6-320 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000435654 e3b0pA1 002991081 Q87G14_nD1 Q87G14 Q87G14_VIBPA VPA1503 4582 21-190 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 002392958 e6fm5A1 002991082 Q87G14_nD2 Q87G14 Q87G14_VIBPA VPA1503 4582 191-320 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 002325668 e6fjyB1 002991083 Q87P51_nD1 Q87P51 Q87P51_VIBPA VP1667 1667 76-170 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 001316899 e4p3zA3 002991084 Q87P51_nD2 Q87P51 Q87P51_VIBPA VP1667 1667 176-280 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 001697186 e5c9eA2 002991085 Q87NP3_nD2 Q87NP3 Q87NP3_VIBPA VP1825 1825 111-255 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000314531 e2ooyE2 002991086 Q87NP3_nD1 Q87NP3 Q87NP3_VIBPA VP1825 1825 21-110 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000156914 e1ylmA1 002991087 Q87SG5_nD1 Q87SG5 Q87SG5_VIBPA VP0459 ftsW Probable peptidoglycan glycosyltransferase FtsW 459 16-395 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002991088 Q79YT8_nD1 Q79YT8 Q79YT8_VIBPA VPA0982 NYN domain-containing protein 4061 6-160 f a.17 2006 2006.1 2006.1.4 a/b three-layered sandwiches HAD domain-like HAD domain-related PIN domain-like 000184882 e2qipA1 002991089 Q87H91_nD1 Q87H91 Q87H91_VIBPA VPA1074 AraC_E_bind domain-containing protein 4153 1-155 f a.11 331 331.3 331.3.1 a+b two layers TBP-like Bet v1-like Bet v1-like 000006324 e2il5A1 002991090 Q87H91_nD2 Q87H91 Q87H91_VIBPA VPA1074 AraC_E_bind domain-containing protein 4153 156-310 f a.15 886 886.1 886.1.1 a+b duplicates or obligate multimers Probable bacterial effector-binding domain Probable bacterial effector-binding domain Probable bacterial effector-binding domain 002735824 e6wl5D1 002991091 Q79YY1_nD1 Q79YY1 Q79YY1_VIBPA VP1552 1552 1-115 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001101221 e4ipdA1 002991092 Q87P82_nD1 Q87P82 Q87P82_VIBPA VP1636 DUF2750 domain-containing protein 1636 6-115 f a.14 358 358.3 358.3.1 a+b complex topology SRCR-like Putative uncharacterized protein TTHA0547 Putative uncharacterized protein TTHA0547 001002524 e2z0rI1 002991093 Q87J17_nD2 Q87J17 Q87J17_VIBPA VPA0436 3515 151-214 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001942491 e5cy2B1 002991094 Q87J17_nD1 Q87J17 Q87J17_VIBPA VPA0436 3515 11-150 f a.17 7565 7565.1 7565.1.1 a/b three-layered sandwiches Resolvase-like Resolvase-like Resolvase-like 000134345 e3guvA1 002991095 Q87IB9_nD1 Q87IB9 Q87IB9_VIBPA VPA0687 DUF4381 domain-containing protein 3766 31-55 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001039749 e2qjyK1 002991096 Q87IB9_nD2 Q87IB9 Q87IB9_VIBPA VPA0687 DUF4381 domain-containing protein 3766 56-170 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000161437 e2hsbA1 002991097 Q87HT4_nD1 Q87HT4 Q87HT4_VIBPA VPA0871 3951 6-230 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002417768 e5gkoA1 002991098 Q87TK8_nD1 Q87TK8 Q87TK8_VIBPA VP0061 Spermidine export protein MdtI 61 6-109 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002673050 e6wk9B1 002991099 Q87FS8_nD1 Q87FS8 Q87FS8_VIBPA VPA1600 UPF0056 inner membrane protein 4679 6-213 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680301 e4zp0A1 002991100 Q87GW2_nD1 Q87GW2 Q87GW2_VIBPA VPA1203 Phasin_2 domain-containing protein 4282 6-105 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 001495253 e4lwsA1 002991101 Q87GA5_nD2 Q87GA5 Q87GA5_VIBPA VPA1412 4491 231-430 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002388911 e6cc4A3 002991102 Q87GA5_nD1 Q87GA5 Q87GA5_VIBPA VPA1412 4491 1-225 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002388911 e6cc4A3 002991103 Q87Q92_nD2 Q87Q92 MAO1_VIBPA VP1258 maeA NAD-dependent malic enzyme 1258 266-555 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002503525 e2dvmC2 002991104 Q87Q92_nD1 Q87Q92 MAO1_VIBPA VP1258 maeA NAD-dependent malic enzyme 1258 6-265 f a.17 2007 2007.1 2007.1.6 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Aminoacid dehydrogenase-like, N-terminal domain 002508182 e6c7nD1 002991105 Q87IE0_nD1 Q87IE0 Q87IE0_VIBPA VPA0666 YgjV family protein 3745 6-75 f a.8 6155 6155.1 6155.1.1 alpha duplicates or obligate multimers TOG superfamily SWEET transporter SWEET transporter 002098022 e5uhqA1 002991106 Q87NH8_nD5 Q87NH8 Q87NH8_VIBPA VP1890 rnr Ribonuclease R 1890 661-740 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002129749 e5xguA3 002991107 Q87NH8_nD2 Q87NH8 Q87NH8_VIBPA VP1890 rnr Ribonuclease R 1890 81-150 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000024059 e2ix1A2 002991108 Q87NH8_nD1 Q87NH8 Q87NH8_VIBPA VP1890 rnr Ribonuclease R 1890 21-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000147301 e2lnbA1 002991109 Q87NH8_nD4 Q87NH8 Q87NH8_VIBPA VP1890 rnr Ribonuclease R 1890 236-660 f a.1 2 2.9 2.9.1 beta barrels OB-fold RNB domain-like RNB domain-like 002129750 e5xguA4 002991110 Q87NH8_nD3 Q87NH8 Q87NH8_VIBPA VP1890 rnr Ribonuclease R 1890 151-235 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002129748 e5xguA2 002991111 Q87L88_nD1 Q87L88 Q87L88_VIBPA VP2724 Iron-hydroxamate ABC transporter substrate-binding protein 2723 26-219 f a.1 5084 5084.2 5084.2.1 beta barrels Outer membrane meander beta-barrels OMPT-like OMPT-like 000139979 e2x4mA1 002991112 Q87HD2_nD1 Q87HD2 Q87HD2_VIBPA VPA1033 Type VI secretion system contractile sheath large subunit 4112 66-380 f a.17 2499 2499.2 2499.2.1 a/b three-layered sandwiches Subtilisin-like Domain III of tail sheath protein Gp18 Domain III of tail sheath protein Gp18 002152035 e5n8nH1 002991113 Q87HD2_nD2 Q87HD2 Q87HD2_VIBPA VPA1033 Type VI secretion system contractile sheath large subunit 4112 381-505 f a.15 283 283.2 283.2.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like gpW/gp25-like gpW/gp25-like 001526185 e3j9gb1 002991114 Q87ML6_nD3 Q87ML6 Q87ML6_VIBPA VP2215 2215 291-405 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001503615 e3e8vA1 002991115 Q87ML6_nD1 Q87ML6 Q87ML6_VIBPA VP2215 2215 31-75 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001718749 e5dseC1 002991116 Q87ML6_nD2 Q87ML6 Q87ML6_VIBPA VP2215 2215 1-25,91-285 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001182411 e2y4uA4 002991117 Q87LD5_nD2 Q87LD5 Y2677_VIBPA VP2677 UPF0307 protein VP2677 2676 101-175 f a.10 3684 3684.1 3684.1.1 alpha complex topology PSPTO4464 C-terminal domain-like PSPTO4464 C-terminal domain-like PSPTO4464 C-terminal domain-like 001031009 e2p0tA3 002991118 Q87LD5_nD1 Q87LD5 Y2677_VIBPA VP2677 UPF0307 protein VP2677 2676 26-100 f a.10 4338 4338.1 4338.1.1 alpha complex topology PSPTO4464 N-terminal domain-like PSPTO4464 N-terminal domain-like PSPTO4464 N-terminal domain-like 002754170 e7bl582 002991119 Q87I35_nD1 Q87I35 Q87I35_VIBPA VPA0771 3850 1-375 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002445531 e6gs1A2 002991120 Q87I35_nD2 Q87I35 Q87I35_VIBPA VPA0771 3850 381-615 f a.17 2007 2007.5 2007.5.1 a/b three-layered sandwiches Flavodoxin-like SGNH hydrolase SGNH hydrolase 002141642 e5w7dA2 002991121 Q87MW9_nD1 Q87MW9 RNFE_VIBPA VP2107 rnfE Ion-translocating oxidoreductase complex subunit E 2107 6-215 f a.10 3921 3921.1 3921.1.1 alpha complex topology Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D 001488368 e4p6vE1 002991122 Q87LN9_nD2 Q87LN9 RNC_VIBPA VP2572 rnc Ribonuclease 3 2571 151-225 f a.11 330 330.1 330.1.1 a+b two layers dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like 001420619 e3j6b52 002991123 Q87LN9_nD1 Q87LN9 RNC_VIBPA VP2572 rnc Ribonuclease 3 2571 6-150 f a.6 171 171.1 171.1.1 alpha arrays RNase III catalytic domain-like RNase III catalytic domain-like RNase III catalytic domain-like 002718816 e6ywv51 002991124 Q87HG6_nD1 Q87HG6 Q87HG6_VIBPA VPA0999 4078 16-440 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008803 e1e43A2 002991125 Q87HG6_nD2 Q87HG6 Q87HG6_VIBPA VPA0999 4078 431-505 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 001489333 e4uzuA2 002991126 Q87IF1_nD3 Q87IF1 Q87IF1_VIBPA VPA0655 Preprotein translocase subunit SecY 3734 286-340 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045608 e1mkmB1 002991127 Q87IF1_nD2 Q87IF1 Q87IF1_VIBPA VPA0655 Preprotein translocase subunit SecY 3734 116-180 f a.7 3711 3711.1 3711.1.1 alpha bundles LTXXQ motif family protein LTXXQ motif family protein LTXXQ motif family protein 001068647 e3layJ1 002991128 Q87IF1_nD1 Q87IF1 Q87IF1_VIBPA VPA0655 Preprotein translocase subunit SecY 3734 16-115,186-240 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002991129 Q87R35_nD4 Q87R35 Q87R35_VIBPA VP0963 963 336-385 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 000997502 e4i44A1 002991130 Q87R35_nD3 Q87R35 Q87R35_VIBPA VP0963 963 141-260 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001225255 e3i9wA2 002991131 Q87R35_nD5 Q87R35 Q87R35_VIBPA VP0963 963 491-560 f a.14 1042 1042.1 1042.1.1 a+b complex topology S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein S2 subunit of coronavirus spike glycoprotein 002137927 e6bfuA1 002991132 Q87R35_nD2 Q87R35 Q87R35_VIBPA VP0963 963 46-140,261-305 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 002429573 e6itsA1 002991133 Q87R35_nD1 Q87R35 Q87R35_VIBPA VP0963 963 6-45,306-335 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002991134 Q87R35_nD6 Q87R35 Q87R35_VIBPA VP0963 963 386-470,561-663 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002991135 Q87ME7_nD1 Q87ME7 LPXD_VIBPA VP2308 lpxD UDP-3-O-acylglucosamine N-acyltransferase 2308 1-90 f a.17 2493 2493.1 2493.1.1 a/b three-layered sandwiches MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like 000369959 e3eh0C3 002991136 Q87ME7_nD2 Q87ME7 LPXD_VIBPA VP2308 lpxD UDP-3-O-acylglucosamine N-acyltransferase 2308 96-343 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 000154920 e4e79B1 002991137 Q87QP4_nD3 Q87QP4 FTSK_VIBPA VP1105 ftsK DNA translocase FtsK 1105 496-525 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000314827 e2oap21 002991138 Q87QP4_nD4 Q87QP4 FTSK_VIBPA VP1105 ftsK DNA translocase FtsK 1105 536-635 f a.11 304 304.156 304.156.1 a+b two layers Alpha-beta plaits DNA translocase FtsK N-terminal domain DNA translocase FtsK N-terminal domain 001286193 e2iutB1 002991139 Q87QP4_nD2 Q87QP4 FTSK_VIBPA VP1105 ftsK DNA translocase FtsK 1105 116-190 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002801378 e7oseE2 002991140 Q87QP4_nD5 Q87QP4 FTSK_VIBPA VP1105 ftsK DNA translocase FtsK 1105 641-945 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001286194 e2iutB2 002991141 Q87QP4_nD6 Q87QP4 FTSK_VIBPA VP1105 ftsK DNA translocase FtsK 1105 966-1025 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002716 e2ve8A1 002991142 Q87QP4_nD1 Q87QP4 FTSK_VIBPA VP1105 ftsK DNA translocase FtsK 1105 21-110 f a.7 3928 3928.1 3928.1.1 alpha bundles Cell division protein CrgA Cell division protein CrgA Cell division protein CrgA 001487328 e2mmuA1 002991143 Q87RR7_nD1 Q87RR7 Q87RR7_VIBPA VP0710 710 6-90 f a.11 306 306.1 306.1.1 a+b two layers Glucose permease domain IIB-like Glucose permease domain IIB Glucose permease domain IIB 000375166 e3ipjB1 002991144 Q87RR7_nD2 Q87RR7 Q87RR7_VIBPA VP0710 710 96-465 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 000416667 e3qnqC1 002991145 Q87IP5_nD1 Q87IP5 Q87IP5_VIBPA VPA0561 Alginate_exp domain-containing protein 3640 36-405 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001168682 e3sy7A2 002991146 Q87PK7_nD1 Q87PK7 Q87PK7_VIBPA VP1495 DUF2960 domain-containing protein 1495 6-75 f a.11 3115 3115.1 3115.1.1 a+b two layers GP2-like RplX-like RplX-like 001764910 e5gakU2 002991147 Q87IS1_nD2 Q87IS1 Q87IS1_VIBPA VPA0535 3614 206-320 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 001840077 e5bmnA2 002991148 Q87IS1_nD1 Q87IS1 Q87IS1_VIBPA VPA0535 3614 1-205 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002074419 e2fuvB5 002991149 Q87IS1_nD3 Q87IS1 Q87IS1_VIBPA VPA0535 3614 321-440 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 001840079 e5bmnA4 002991150 Q87IS1_nD4 Q87IS1 Q87IS1_VIBPA VPA0535 3614 441-560 f a.11 331 331.2 331.2.1 a+b two layers TBP-like Phosphoglucomutase, C-terminal domain Phosphoglucomutase, C-terminal domain 001556884 e4qg5A2 002991151 Q87I14_nD1 Q87I14 Q87I14_VIBPA VPA0792 3871 6-325 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002145579 e5u1dA3 002991152 Q87I14_nD2 Q87I14 Q87I14_VIBPA VPA0792 3871 326-580 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002404846 e5ochB1 002991153 Q87PZ0_nD1 Q87PZ0 Q87PZ0_VIBPA VP1360 DUF1656 domain-containing protein 1360 16-65 f a.7 1037 1037.1 1037.1.1 alpha bundles Prolipoprotein diacylglyceryl transferase Prolipoprotein diacylglyceryl transferase Prolipoprotein diacylglyceryl transferase 001734349 e5azbA1 002991154 Q87PK0_nD4 Q87PK0 Q87PK0_VIBPA VP1502 1502 421-475 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001822676 e2llkA1 002991155 Q87PK0_nD3 Q87PK0 Q87PK0_VIBPA VP1502 1502 326-405 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001314443 e4qhtC2 002991156 Q87PK0_nD1 Q87PK0 Q87PK0_VIBPA VP1502 1502 11-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001095677 e4l4uA2 002991157 Q87PK0_nD2 Q87PK0 Q87PK0_VIBPA VP1502 1502 151-325 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000169530 e3dzdA1 002991158 Q87M56_nD1 Q87M56 Q87M56_VIBPA VP2402 2402 1-50 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002391034 e5yszA1 002991159 Q87M56_nD2 Q87M56 Q87M56_VIBPA VP2402 2402 51-155,291-315 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001253059 e2h0aA3 002991160 Q87M56_nD3 Q87M56 Q87M56_VIBPA VP2402 2402 156-290,316-328 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002991161 Q87JF6_nD1 Q87JF6 Q87JF6_VIBPA VPA0297 3376 16-350 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002991162 Q87JF6_nD2 Q87JF6 Q87JF6_VIBPA VPA0297 3376 371-465 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001700220 e5dleD1 002991163 Q87LG9_nD1 Q87LG9 Q87LG9_VIBPA VP2643 Lipopolysaccharide export system permease protein LptF 2642 1-135,246-360 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002464330 e6mjpF2 002991164 Q87LG9_nD2 Q87LG9 Q87LG9_VIBPA VP2643 Lipopolysaccharide export system permease protein LptF 2642 141-245 f a.2 3523 3523.1 3523.1.1 beta meanders Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) 002464329 e6mjpF1 002991165 Q87MY4_nD1 Q87MY4 Q87MY4_VIBPA VP2092 Molybdopterin synthase catalytic subunit 2092 1-150 f a.14 325 325.1 325.1.2 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Molybdopterin synthase subunit MoaE 000007539 e1fm0E1 002991166 Q87N84_nD1 Q87N84 Q87N84_VIBPA VP1991 1991 1-340 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000144464 e3rpdA1 002991167 Q87PD5_nD1 Q87PD5 Q87PD5_VIBPA VP1579 Transmembrane protein 1579 11-75 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000008016 e1nuiA2 002991168 Q87NA4_nD1 Q87NA4 Q87NA4_VIBPA VP1971 1971 6-130 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000071645 e1yliB1 002991169 Q87IL9_nD1 Q87IL9 PCP_VIBPA VPA0587 pcp Pyrrolidone-carboxylate peptidase 3666 1-205 f a.17 2011 2011.4 2011.4.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 000165188 e2ebjA1 002991170 Q9L7P5_nD1 Q9L7P5 CH601_VIBPA VP2851 groEL1 Chaperonin GroEL 1 2850 6-135,411-520 f a.7 593 593.1 593.1.1 alpha bundles GroEL equatorial domain-like GroEL equatorial domain-like GroEL equatorial domain-like 000057390 e1kp8E1 002991171 Q9L7P5_nD2 Q9L7P5 CH601_VIBPA VP2851 groEL1 Chaperonin GroEL 1 2850 136-190,376-410 f a.18 2498 2498.5 2498.5.1 mixed a+b and a/b Zincin-like GroEL-intermediate domain like GroEL-intermediate domain like 000068806 e1kp8E2 002991172 Q9L7P5_nD3 Q9L7P5 CH601_VIBPA VP2851 groEL1 Chaperonin GroEL 1 2850 191-375 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000117595 e1sjpB3 002991173 Q87H79_nD2 Q87H79 RBSA_VIBPA VPA1086 rbsA Ribose import ATP-binding protein RbsA 4165 246-500 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001918562 e5b57C1 002991174 Q87H79_nD1 Q87H79 RBSA_VIBPA VPA1086 rbsA Ribose import ATP-binding protein RbsA 4165 1-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002991175 Q87RH5_nD4 Q87RH5 HTPG_VIBPA VP0821 htpG Chaperone protein HtpG 821 496-630 f a.18 2498 2498.4 2498.4.1 mixed a+b and a/b Zincin-like HSP90 C-terminal domain (C-terminal part of Pfam 00183) HSP90 C-terminal domain (C-terminal part of Pfam 00183) 000310283 e2iopC2 002991176 Q87RH5_nD3 Q87RH5 HTPG_VIBPA VP0821 htpG Chaperone protein HtpG 821 376-495 f a.17 3703 3703.1 3703.1.1 a/b three-layered sandwiches HSP90 C-terminal a/b domain HSP90 C-terminal a/b domain HSP90 C-terminal a/b domain 001109035 e2gq0B2 002991177 Q87RH5_nD2 Q87RH5 HTPG_VIBPA VP0821 htpG Chaperone protein HtpG 821 241-375 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001223675 e1y4sA5 002991178 Q87RH5_nD1 Q87RH5 HTPG_VIBPA VP0821 htpG Chaperone protein HtpG 821 11-235 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000281193 e1y4sA2 002991179 Q87RF7_nD1 Q87RF7 Q87RF7_VIBPA VP0840 Type II citrate synthase 840 1-250 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 002715568 e6wxxC2 002991180 Q87S43_nD1 Q87S43 Q87S43_VIBPA VP0581 581 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002991181 Q87S43_nD2 Q87S43 Q87S43_VIBPA VP0581 581 86-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002991182 Q87H03_nD1 Q87H03 Q87H03_VIBPA VPA1162 4241 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010037 e2r25B1 002991183 Q87H03_nD2 Q87H03 Q87H03_VIBPA VPA1162 4241 136-334 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 000142897 e3qtaA1 002991184 Q87RL8_nD1 Q87RL8 Q87RL8_VIBPA VP0760 760 17-373 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002151510 e5mdqB1 002991185 Q87GF1_nD1 Q87GF1 Q87GF1_VIBPA VPA1365 4444 1-155 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001400570 e4nrhB1 002991186 Q87LB4_nD2 Q87LB4 Q87LB4_VIBPA VP2698 2697 31-165 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001137424 e4ixjB1 002991187 Q87LB4_nD1 Q87LB4 Q87LB4_VIBPA VP2698 2697 6-30 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000161689 e2hi2A1 002991188 Q87L22_nD2 Q87L22 ASTD_VIBPA VP2795 astD N-succinylglutamate 5-semialdehyde dehydrogenase 2794 246-450 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901909 e3ju8A1 002991189 Q87L22_nD1 Q87L22 ASTD_VIBPA VP2795 astD N-succinylglutamate 5-semialdehyde dehydrogenase 2794 1-245,451-465 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901996 e4knaA1 002991190 Q87SY9_nD1 Q87SY9 RL17_VIBPA VP0283 rplQ 50S ribosomal protein L17 283 6-115 f a.11 218 218.3 218.3.1 a+b two layers Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 001860047 e5j8aDO1 002991191 Q87I68_nD2 Q87I68 Q87I68_VIBPA VPA0738 3817 131-198 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 000002762 e1yioA1 002991192 Q87I68_nD1 Q87I68 Q87I68_VIBPA VPA0738 3817 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002138611 e5o8zA1 002991193 Q87Q51_nD1 Q87Q51 Q87Q51_VIBPA VP1299 CidB/LrgB family autolysis modulator 1299 1-220 f a.10 3236 3236.2 3236.2.1 alpha complex topology Cation-proton antiporter Sodium-dependent citrate symporter Sodium-dependent citrate symporter 001759948 e5a1sD1 002991194 Q87MW2_nD1 Q87MW2 Q87MW2_VIBPA VP2119 Ribosomal S4P 2119 71-115 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001088854 e4bx9C1 002991195 Q87MU4_nD4 Q87MU4 Q87MU4_VIBPA VP2137 Plasmid recombination enzyme 2137 426-480 f a.7 604 604.12 604.12.1 alpha bundles Spectrin repeat-like MIT domain MIT domain 000162201 e2dl1A1 002991196 Q87MU4_nD3 Q87MU4 Q87MU4_VIBPA VP2137 Plasmid recombination enzyme 2137 341-425 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001503722 e4uy3A2 002991197 Q87MU4_nD1 Q87MU4 Q87MU4_VIBPA VP2137 Plasmid recombination enzyme 2137 86-170 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000048028 e2gytA1 002991198 Q87MU4_nD2 Q87MU4 Q87MU4_VIBPA VP2137 Plasmid recombination enzyme 2137 6-85,171-340 f a.11 304 304.55 304.55.1 a+b two layers Alpha-beta plaits Origin of replication-binding domains Origin of replication-binding domains 001397393 e4lvlA1 002991199 Q87RL2_nD1 Q87RL2 Q87RL2_VIBPA VP0766 Fe3+-citrate ABC transporter substrate-binding protein 766 36-105 f a.12 223 223.2 223.2.1 a+b three layers Profilin-like profilin-like profilin-like 000348749 e2jkgA1 002991200 Q87RL2_nD2 Q87RL2 Q87RL2_VIBPA VP0766 Fe3+-citrate ABC transporter substrate-binding protein 766 106-185 f a.11 252 252.2 252.2.1 a+b two layers DNA-binding domain GCC-box binding domain-like GCC-box binding domain-like 000119401 e3igmB1 002991201 Q87M63_nD1 Q87M63 Q87M63_VIBPA VP2395 Cellulase domain-containing protein 2395 1-355 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002714588 e6wgdB1 002991202 Q87PN0_nD1 Q87PN0 Q87PN0_VIBPA VP1472 Phosphorelay protein LuxU 1472 1-110 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002991203 Q87LS6_nD2 Q87LS6 Q87LS6_VIBPA VP2535 Cytochrom_C_asm domain-containing protein 2535 121-264 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 001838821 e5doqA1 002991204 Q87LS6_nD1 Q87LS6 Q87LS6_VIBPA VP2535 Cytochrom_C_asm domain-containing protein 2535 1-120 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 000221858 e4iggB3 002991205 Q87G37_nD1 Q87G37 Q87G37_VIBPA VPA1480 Biotin_lipoyl_2 domain-containing protein 4559 1-25 f a.7 193 193.1 193.1.1 alpha bundles CH domain-like Calponin-homology domain-like Calponin-homology domain-like 001145841 e2ve7A1 002991206 Q87G37_nD2 Q87G37 Q87G37_VIBPA VPA1480 Biotin_lipoyl_2 domain-containing protein 4559 96-215 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002991207 Q87G37_nD3 Q87G37 Q87G37_VIBPA VPA1480 Biotin_lipoyl_2 domain-containing protein 4559 61-95,216-255 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002991208 Q87G37_nD4 Q87G37 Q87G37_VIBPA VPA1480 Biotin_lipoyl_2 domain-containing protein 4559 26-60,256-300,321-375 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001313622 e4tkoB1 002991209 Q56703_nD1 Q56703 FLAA_VIBPA VP2258 flaA Polar flagellin A 2258 6-170,271-375 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002991210 Q56703_nD2 Q56703 FLAA_VIBPA VP2258 flaA Polar flagellin A 2258 171-270 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002559772 e6iwyA3 002991211 Q87PZ4_nD1 Q87PZ4 Q87PZ4_VIBPA VP1356 Omp85 domain-containing protein 1356 61-393 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001312446 e4c00A4 002991212 Q87S49_nD3 Q87S49 Q87S49_VIBPA VP0575 Phosphate transport system permease protein PstA 575 181-240 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 000004346 e2c2aA1 002991213 Q87S49_nD4 Q87S49 Q87S49_VIBPA VP0575 Phosphate transport system permease protein PstA 575 1-40,286-555 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001779670 e4xtcM1 002991214 Q87S49_nD2 Q87S49 Q87S49_VIBPA VP0575 Phosphate transport system permease protein PstA 575 131-180,241-285 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000367561 e3hfoB1 002991215 Q87S49_nD1 Q87S49 Q87S49_VIBPA VP0575 Phosphate transport system permease protein PstA 575 46-130 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000157625 e1y96B1 002991216 Q87IU6_nD1 Q87IU6 Q87IU6_VIBPA VPA0510 Cuticle protein 3589 106-145 f a.3 3156 3156.2 3156.2.1 beta sandwiches Cupredoxin-like Czce Czce 000119286 e2wtoA1 002991217 P66533_nD1 P66533 RS21_VIBPA VP0407 rpsU 30S ribosomal protein S21 407 1-65 f a.21 3666 3666.1 3666.1.1 extended segments 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21 002666360 e7k00U1 002991218 Q87SN6_nD3 Q87SN6 Q87SN6_VIBPA VP0386 386 141-240 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002137727 e5wc9A1 002991219 Q87SN6_nD2 Q87SN6 Q87SN6_VIBPA VP0386 386 56-95 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001893315 e5gkeA2 002991220 Q87SN6_nD1 Q87SN6 Q87SN6_VIBPA VP0386 386 6-55 f a.6 108 108.1 108.1.1 alpha arrays EF-hand EF-hand-related EF-hand 001154435 e4mspA4 002991221 Q87LE9_nD1 Q87LE9 Q87LE9_VIBPA VP2663 Intermembrane phospholipid transport system permease protein MlaE 2662 6-30 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002440128 e6idpA2 002991222 Q87LE9_nD2 Q87LE9 Q87LE9_VIBPA VP2663 Intermembrane phospholipid transport system permease protein MlaE 2662 36-260 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002464330 e6mjpF2 002991223 Q87R59_nD1 Q87R59 Q87R59_VIBPA VP0939 Tim44 domain-containing protein 939 166-290 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 002764818 e7nsjBi1 002991224 Q87JI3_nD1 Q87JI3 FLGH2_VIBPA VPA0270 flgH2 Flagellar L-ring protein 2 3349 66-80,131-200 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002525277 e6nnbA1 002991225 Q87T78_nD1 Q87T78 Q87T78_VIBPA VP0192 Family 2 glycosyl transferase 192 1-260 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001565416 e2z86B1 002991226 Q87JS8_nD1 Q87JS8 SPEA_VIBPA VPA0170 speA Biosynthetic arginine decarboxylase 3249 71-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001807415 e3n2oA2 002991227 Q87JS8_nD2 Q87JS8 SPEA_VIBPA VPA0170 speA Biosynthetic arginine decarboxylase 3249 366-465 f a.7 604 604.34 604.34.1 alpha bundles Spectrin repeat-like Helical bundle domain in arginine decarboxylase Helical bundle domain in arginine decarboxylase 001807416 e3n2oA3 002991228 Q87JS8_nD3 Q87JS8 SPEA_VIBPA VPA0170 speA Biosynthetic arginine decarboxylase 3249 11-70,351-365,466-640 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001807414 e3n2oA1 002991229 Q87FH9_nD1 Q87FH9 UXUA_VIBPA VPA1700 uxuA Mannonate dehydratase 4779 1-395 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001833079 e4eayC1 002991230 Q87PB7_nD1 Q87PB7 PYRD_VIBPA VP1601 pyrD Dihydroorotate dehydrogenase (quinone) 1600 1-335 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000093019 e1f76B1 002991231 Q87JU2_nD1 Q87JU2 Q87JU2_VIBPA VPA0156 TPR_REGION domain-containing protein 3235 26-390 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002436450 e6hd5t1 002991232 Q87NZ2_nD1 Q87NZ2 Q87NZ2_VIBPA VP1726 1726 1-265 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002991233 Q87NZ2_nD2 Q87NZ2 Q87NZ2_VIBPA VP1726 1726 266-395 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000137698 e3kpcA1 002991234 Q87R07_nD1 Q87R07 Q87R07_VIBPA VP0991 Energy-coupling factor ABC transporter permease 991 1-220 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 002488979 e4m5bA1 002991235 Q87LQ9_nD1 Q87LQ9 MUTS_VIBPA VP2552 mutS DNA mismatch repair protein MutS 2552 1-115 f a.11 242 242.3 242.3.1 a+b two layers Homing endonucleases-like DNA repair protein MutS, domain I DNA repair protein MutS, domain I 000067927 e1ng9A2 002991236 Q87LQ9_nD2 Q87LQ9 MUTS_VIBPA VP2552 mutS DNA mismatch repair protein MutS 2552 116-265 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000115245 e1ng9A4 002991237 Q87LQ9_nD4 Q87LQ9 MUTS_VIBPA VP2552 mutS DNA mismatch repair protein MutS 2552 566-853 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001777471 e3thxA1 002991238 Q87LQ9_nD3 Q87LQ9 MUTS_VIBPA VP2552 mutS DNA mismatch repair protein MutS 2552 271-565 f a.7 601 601.23 601.23.1 alpha bundles Four-helical up-and-down bundle DNA repair protein MutS, domain III DNA repair protein MutS, domain III 000054696 e1ng9A1 002991239 Q87JQ2_nD1 Q87JQ2 Q87JQ2_VIBPA VPA0196 DUF3541 domain-containing protein 3275 31-355 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 000004512 e2ri9A1 002991240 Q87S71_nD1 Q87S71 TRPR_VIBPA VP0553 trpR Trp operon repressor homolog 553 6-103 f a.6 101 101.1 101.1.6 alpha arrays HTH HTH TrpR 002132811 e5tm0C1 002991241 Q87M95_nD2 Q87M95 Q87M95_VIBPA VP2363 2-dehydropantoate 2-reductase 2363 171-295 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000003516 e1ks9A1 002991242 Q87M95_nD1 Q87M95 Q87M95_VIBPA VP2363 2-dehydropantoate 2-reductase 2363 1-170 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009178 e1ks9A2 002991243 Q87I10_nD1 Q87I10 Q87I10_VIBPA VPA0796 3875 16-290 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001194022 e3pj0D2 002991244 Q87I10_nD2 Q87I10 Q87I10_VIBPA VPA0796 3875 6-15,276-355 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002616996 e5qt3B1 002991245 Q87G48_nD1 Q87G48 Q87G48_VIBPA VPA1469 lpp Major outer membrane lipoprotein Lpp 4548 26-80 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002524037 e6otnC1 002991246 Q87IN4_nD1 Q87IN4 Q87IN4_VIBPA VPA0572 3651 6-215 f a.7 5082 5082.1 5082.1.1 alpha bundles Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like 002658342 e6xpdA1 002991247 Q87IN4_nD2 Q87IN4 Q87IN4_VIBPA VPA0572 3651 216-298 f a.11 327 327.7 327.7.1 a+b two layers Alpha-lytic protease prodomain-like Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 000070687 e3byrA1 002991248 Q87NN7_nD1 Q87NN7 Q87NN7_VIBPA VP1831 MazG domain-containing protein 1831 1-94 f a.7 159 159.1 159.1.2 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases MazG-related 000329260 e2q5zB1 002991249 Q87FT1_nD2 Q87FT1 TRHO_VIBPA VPA1597 trhO tRNA uridine(34) hydroxylase 4676 96-290 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 000150427 e4f67A1 002991250 Q87FT1_nD1 Q87FT1 TRHO_VIBPA VPA1597 trhO tRNA uridine(34) hydroxylase 4676 6-95 f a.11 304 304.110 304.110.1 a+b two layers Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like 000150428 e4f67A2 002991251 Q87TH0_nD2 Q87TH0 TATB_VIBPA VP0099 tatB Sec-independent protein translocase protein TatB 99 56-95 f a.8 6051 6051.4 6051.4.1 alpha duplicates or obligate multimers Docking domains in modular polyketide synthases Class 2 N-terminal docking domain Class 2 N-terminal docking domain 001825031 e4myyB1 002991252 Q87TH0_nD1 Q87TH0 TATB_VIBPA VP0099 tatB Sec-independent protein translocase protein TatB 99 1-55 f a.21 3473 3473.1 3473.1.1 extended segments Twin-arginine transport (Tat) system component TatA Twin-arginine transport (Tat) system component TatA Twin-arginine transport (Tat) system component TatA 001503565 e2mi2A1 002991253 Q87TR5_nD2 Q87TR5 YIDC_VIBPA VP0003 yidC Membrane protein insertase YidC 3 331-540 f a.7 3877 3877.1 3877.1.1 alpha bundles Membrane protein insertase YidC-related Membrane protein insertase YidC-related Membrane protein insertase YidC 002819444 e6y86A2 002991254 Q87TR5_nD1 Q87TR5 YIDC_VIBPA VP0003 yidC Membrane protein insertase YidC 3 61-330 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 002410161 e6al2A1 002991255 Q87PU1_nD1 Q87PU1 Q87PU1_VIBPA VP1410 OMP_b-brl domain-containing protein 1410 26-203 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000141724 e2x27X1 002991256 Q87IW3_nD1 Q87IW3 Q87IW3_VIBPA VPA0493 Phenazine biosynthesis protein PhzF 3572 1-120 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 001107970 e1s7jA2 002991257 Q87IW3_nD2 Q87IW3 Q87IW3_VIBPA VPA0493 Phenazine biosynthesis protein PhzF 3572 121-263 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 001107971 e1s7jA3 002991258 Q87RD1_nD1 Q87RD1 TSAB_VIBPA VP0866 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB 866 1-110 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000144537 e3r6mA1 002991259 Q87RD1_nD2 Q87RD1 TSAB_VIBPA VP0866 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB 866 111-230 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000223530 e3zeuA2 002991260 Q87HQ7_nD1 Q87HQ7 Q87HQ7_VIBPA VPA0903 TrwB_AAD_bind domain-containing protein 3982 26-70 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001082815 e4ihqA1 002991261 Q87HQ7_nD2 Q87HQ7 Q87HQ7_VIBPA VPA0903 TrwB_AAD_bind domain-containing protein 3982 71-100,126-365 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001414911 e4d2iB2 002991262 Q87TQ0_nD1 Q87TQ0 Q87TQ0_VIBPA VP0019 19 1-415 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001392763 e3if2B2 002991263 Q87M77_nD1 Q87M77 Q87M77_VIBPA VP2381 2381 21-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008789 e1ydyA1 002991264 Q87GS8_nD1 Q87GS8 Q87GS8_VIBPA VPA1237 4316 11-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001525305 e4mgrA2 002991265 Q87GS8_nD2 Q87GS8 Q87GS8_VIBPA VPA1237 4316 111-475 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001152403 e4je5B6 002991266 Q87KY7_nD1 Q87KY7 Q87KY7_VIBPA VP2837 VanZ domain-containing protein 2836 1-120 f a.7 5064 5064.1 5064.1.1 alpha bundles Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL 002568683 e6kmwaL1 002991267 Q87NY4_nD1 Q87NY4 Q87NY4_VIBPA VP1734 1734 1-120 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002991268 Q87NY4_nD2 Q87NY4 Q87NY4_VIBPA VP1734 1734 126-218 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001824448 e5ed4E1 002991269 Q87Q78_nD2 Q87Q78 Q87Q78_VIBPA VP1272 DUF3581 domain-containing protein 1272 111-235 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000136500 e3ir3A1 002991270 Q87Q78_nD1 Q87Q78 Q87Q78_VIBPA VP1272 DUF3581 domain-containing protein 1272 1-110 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 001495270 e4oobA2 002991271 Q87PT8_nD2 Q87PT8 Q87PT8_VIBPA VP1413 Type VI secretion system baseplate subunit TssK 1413 186-310 f a.6 602 602.3 602.3.1 alpha arrays L-aspartase middle domain-like TssK neck domain TssK neck domain 002089738 e5mwnB2 002991272 Q87PT8_nD1 Q87PT8 Q87PT8_VIBPA VP1413 Type VI secretion system baseplate subunit TssK 1413 1-185 f a.3 4166 4166.1 4166.1.1 beta sandwiches Lactophage receptor-binding protein N-terminal domain-like Lactophage receptor-binding protein N-terminal domain-like Lactophage receptor-binding protein N-terminal domain-like 002390431 e5y0eA1 002991273 Q87PT8_nD3 Q87PT8 Q87PT8_VIBPA VP1413 Type VI secretion system baseplate subunit TssK 1413 311-440 f a.3 10 10.47 10.47.1 beta sandwiches jelly-roll TssK C-terminal domain TssK C-terminal domain 002390432 e5y0eA2 002991274 Q87R33_nD3 Q87R33 Q87R33_VIBPA VP0965 TPR_REGION domain-containing protein 965 281-290,326-345,411-460 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001687074 e5a9dB1 002991275 Q87R33_nD2 Q87R33 Q87R33_VIBPA VP0965 TPR_REGION domain-containing protein 965 291-325 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001549427 e4ymrA1 002991276 Q87R33_nD1 Q87R33 Q87R33_VIBPA VP0965 TPR_REGION domain-containing protein 965 1-180,201-280,346-380 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001657777 e4r7sA1 002991277 Q87LW0_nD4 Q87LW0 Q87LW0_VIBPA VP2498 2498 501-580 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002491479 e6eudA5 002991278 Q87LW0_nD3 Q87LW0 Q87LW0_VIBPA VP2498 2498 351-500 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002491477 e6eudA3 002991279 Q87LW0_nD6 Q87LW0 Q87LW0_VIBPA VP2498 2498 616-805 f a.14 7045 7045.1 7045.1.1 a+b complex topology C-terminal domain of RNA helicase HrpB C-terminal domain of RNA helicase HrpB C-terminal domain of RNA helicase HrpB 002485689 e6eudA7 002991280 Q87LW0_nD1 Q87LW0 Q87LW0_VIBPA VP2498 2498 1-180 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009697 e1uaaA1 002991281 Q87LW0_nD5 Q87LW0 Q87LW0_VIBPA VP2498 2498 581-615 f a.2 64 64.5 64.5.1 beta meanders WW domain-like Connector region of RNA helicase HrpB Connector region of RNA helicase HrpB 002485688 e6eudA6 002991282 Q87LW0_nD2 Q87LW0 Q87LW0_VIBPA VP2498 2498 181-350 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002819874 e7d63RZ3 002991283 Q87GG3_nD1 Q87GG3 Q87GG3_VIBPA VPA1353 4432 31-110 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001678533 e5boiA2 002991284 Q87GG3_nD2 Q87GG3 Q87GG3_VIBPA VPA1353 4432 116-265 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 000216283 e3s0yA1 002991285 Q87LU3_nD4 Q87LU3 Q87LU3_VIBPA VP2518 Acetyltransferase component of pyruvate dehydrogenase complex 2518 321-370 f a.6 147 147.1 147.1.1 alpha arrays Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 000338901 e2eq8F1 002991286 Q87LU3_nD3 Q87LU3 Q87LU3_VIBPA VP2518 Acetyltransferase component of pyruvate dehydrogenase complex 2518 191-280 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002991287 Q87LU3_nD1 Q87LU3 Q87LU3_VIBPA VP2518 Acetyltransferase component of pyruvate dehydrogenase complex 2518 1-85 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 000085265 e1iyvA1 002991288 Q87LU3_nD5 Q87LU3 Q87LU3_VIBPA VP2518 Acetyltransferase component of pyruvate dehydrogenase complex 2518 381-625 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 001290797 e4n72C1 002991289 Q87LU3_nD2 Q87LU3 Q87LU3_VIBPA VP2518 Acetyltransferase component of pyruvate dehydrogenase complex 2518 91-190 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001139847 e4kkuB3 002991290 Q87SW2_nD1 Q87SW2 Q87SW2_VIBPA VP0310 DUF2799 domain-containing protein 310 21-110 f a.7 6028 6028.1 6028.1.1 alpha bundles Ribosome modulation factor Ribosome modulation factor Ribosome modulation factor 002403868 e6h58vv1 002991291 Q87PC4_nD1 Q87PC4 Q87PC4_VIBPA VP1593 rmf Ribosome modulation factor 1593 6-50 f a.7 6028 6028.1 6028.1.1 alpha bundles Ribosome modulation factor Ribosome modulation factor Ribosome modulation factor 000184677 e2jrmA1 002991292 Q87NF6_nD1 Q87NF6 Q87NF6_VIBPA VP1912 MarR family transcriptional regulator 1912 61-129 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000410770 e2xigC1 002991293 Q87GA3_nD1 Q87GA3 AC4CH_VIBPA VPA1414 N(4)-acetylcytidine amidohydrolase 4493 6-105 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 000144031 e3s9xA1 002991294 Q87N56_nD1 Q87N56 Q87N56_VIBPA VP2019 ABC_trans_aux domain-containing protein 2019 26-190 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 002482419 e6osxA1 002991295 Q87IW7_nD1 Q87IW7 Q87IW7_VIBPA VPA0489 3568 1-225,296-308 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002991296 Q87IW7_nD2 Q87IW7 Q87IW7_VIBPA VPA0489 3568 226-295 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000160731 e2cviA1 002991297 Q87P45_nD1 Q87P45 Q87P45_VIBPA VP1673 1673 6-80 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 002824855 e7p3wO1 002991298 Q87TI5_nD1 Q87TI5 Q87TI5_VIBPA VP0084 Hemerythrin domain-containing protein 84 1-143 f a.7 601 601.14 601.14.1 alpha bundles Four-helical up-and-down bundle Hemerythrin Hemerythrin 002572833 e6q09A1 002991299 Q87MS5_nD1 Q87MS5 MSRB_VIBPA VP2156 msrB Peptide methionine sulfoxide reductase MsrB 2156 16-145 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 000342714 e3cxkB1 002991300 Q87NC7_nD1 Q87NC7 Q87NC7_VIBPA VP1941 1941 1-415 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002722804 e6y87A1 002991301 Q87T91_nD1 Q87T91 Q87T91_VIBPA VP0179 lpxL Lipid A biosynthesis lauroyltransferase 179 11-315 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 001890022 e5knkB1 002991302 Q9X9K2_nD1 Q9X9K2 CHER_VIBPA VP0774 cheR Chemotaxis protein methyltransferase 774 6-75 f a.6 518 518.1 518.1.1 alpha arrays Chemotaxis receptor methyltransferase CheR, N-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 002104107 e5xlyA1 002991303 Q9X9K2_nD2 Q9X9K2 CHER_VIBPA VP0774 cheR Chemotaxis protein methyltransferase 774 76-275 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002104108 e5xlyA2 002991304 Q87I26_nD1 Q87I26 Q87I26_VIBPA VPA0780 N-acylglucosamine 2-epimerase 3859 16-480 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 001316701 e4jjjA1 002991305 Q87T58_nD1 Q87T58 Q87T58_VIBPA VP0212 212 1-160 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001718404 e3tovB2 002991306 Q87T58_nD2 Q87T58 Q87T58_VIBPA VP0212 212 161-345 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001716637 e1pswA3 002991307 Q87LF7_nD2 Q87LF7 PYRI_VIBPA VP2655 pyrI Aspartate carbamoyltransferase regulatory chain 2654 101-150 f a.19 375 375.1 375.1.4 few secondary structure elements Rubredoxin-like Rubredoxin-related Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 000162402 e2be7D2 002991308 Q87LF7_nD1 Q87LF7 PYRI_VIBPA VP2655 pyrI Aspartate carbamoyltransferase regulatory chain 2654 11-100 f a.11 304 304.38 304.38.1 a+b two layers Alpha-beta plaits Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain 000005334 e1pg5B1 002991309 Q87I97_nD1 Q87I97 Q87I97_VIBPA VPA0709 3788 1-205 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001554530 e5ai4A1 002991310 Q87KE6_nD1 Q87KE6 Q87KE6_VIBPA VP3031 3030 1-180 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 000142844 e3r3rA1 002991311 Q87LB2_nD4 Q87LB2 Q87LB2_VIBPA VP2700 2699 246-375 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 002170083 e5nbgB1 002991312 Q87LB2_nD3 Q87LB2 Q87LB2_VIBPA VP2700 2699 176-225,376-405 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000143840 e3ok8A1 002991313 Q87LB2_nD2 Q87LB2 Q87LB2_VIBPA VP2700 2699 61-175 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001035504 e2vmaA1 002991314 Q87LB2_nD1 Q87LB2 Q87LB2_VIBPA VP2700 2699 1-45 f a.11 3115 3115.1 3115.1.1 a+b two layers GP2-like RplX-like RplX-like 002678864 e6zu5LS02 002991315 Q87PS1_nD1 Q87PS1 Q87PS1_VIBPA VP1430 Transposase 1430 6-50 f a.7 1076 1076.1 1076.1.1 alpha bundles Hypothetical protein RPA3313 Hypothetical protein RPA3313 Hypothetical protein RPA3313 001838841 e5jn6A1 002991316 Q87PS1_nD2 Q87PS1 Q87PS1_VIBPA VP1430 Transposase 1430 51-170 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 001000632 e2zqmA1 002991317 Q87Q24_nD1 Q87Q24 Q87Q24_VIBPA VP1326 TSPc domain-containing protein 1326 46-145 f a.7 3694 3694.1 3694.1.1 alpha bundles Tail specific protease helical domain Tail specific protease helical domain Tail specific protease helical domain 002564165 e6vbbA3 002991318 Q87Q24_nD2 Q87Q24 Q87Q24_VIBPA VP1326 TSPc domain-containing protein 1326 146-245 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 000000743 e1fc6A1 002991319 Q87Q24_nD3 Q87Q24 Q87Q24_VIBPA VP1326 TSPc domain-containing protein 1326 246-490 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001070249 e3k50A2 002991320 Q87G07_nD2 Q87G07 Q87G07_VIBPA VPA1513 4592 396-468 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001115375 e3ihjA2 002991321 Q87G07_nD1 Q87G07 Q87G07_VIBPA VPA1513 4592 36-395 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001879220 e5i90B1 002991322 Q87G89_nD1 Q87G89 Q87G89_VIBPA VPA1428 Azurin 4507 26-150 f a.3 3156 3156.1 3156.1.1 beta sandwiches Cupredoxin-like Cupredoxin-related Cupredoxin-related 000039431 e1dz0A1 002991323 Q87ST0_nD1 Q87ST0 LEUD_VIBPA VP0342 leuD 3-isopropylmalate dehydratase small subunit 342 1-195 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000411169 e3q3wB1 002991324 Q87T49_nD2 Q87T49 Q87T49_VIBPA VP0221 221 61-290 f a.11 304 304.58 304.58.1 a+b two layers Alpha-beta plaits FepE-like FepE-like 000005387 e3b8mA1 002991325 Q87T49_nD1 Q87T49 Q87T49_VIBPA VP0221 221 31-60,291-320 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002991326 Q87IZ1_nD1 Q87IZ1 Q87IZ1_VIBPA VPA0465 3544 11-205 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001495633 e1d4aB1 002991327 Q87FM8_nD2 Q87FM8 Q87FM8_VIBPA VPA1651 4730 291-350 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002991328 Q87FM8_nD5 Q87FM8 Q87FM8_VIBPA VPA1651 4730 351-375,596-625 f a.7 3755 3755.4 3755.4.1 alpha bundles YscO-like Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 002537293 e6pyrB1 002991329 Q87FM8_nD1 Q87FM8 Q87FM8_VIBPA VPA1651 4730 6-270 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002991330 Q87FM8_nD3 Q87FM8 Q87FM8_VIBPA VPA1651 4730 376-435,536-595 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002991331 Q87FM8_nD4 Q87FM8 Q87FM8_VIBPA VPA1651 4730 451-535 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002083250 e5vo5A1 002991332 Q87PA9_nD1 Q87PA9 Q87PA9_VIBPA VP1608 GAF domain-containing protein 1608 6-155 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000139272 e3mmhA1 002991333 Q87GS1_nD1 Q87GS1 Q87GS1_VIBPA VPA1244 Glutaredoxin domain-containing protein 4323 1-35 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011335 e1kngA1 002991334 Q87FP5_nD1 Q87FP5 Q87FP5_VIBPA VPA1633 SpoVT-AbrB domain-containing protein 4712 1-45 f a.1 1 1.1 1.1.3 beta barrels cradle loop barrel RIFT-related AbrB 000352171 e2k1nD1 002991335 Q87LN5_nD1 Q87LN5 Q87LN5_VIBPA VP2576 2575 26-220 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 001242184 e3m4wC3 002991336 Q87LN5_nD2 Q87LN5 Q87LN5_VIBPA VP2576 2575 221-315 f a.12 881 881.4 881.4.1 a+b three layers Mog1p/PsbP-like C-terminal domain in sigma-E factor regulatory protein rseB C-terminal domain in sigma-E factor regulatory protein rseB 001242183 e3m4wC2 002991337 Q87KD3_nD1 Q87KD3 RSMB_VIBPA VP3044 rsmB Ribosomal RNA small subunit methyltransferase B 3043 1-130 f a.10 195 195.1 195.1.1 alpha complex topology NusB-like NusB-like NusB-like 000004840 e1sqgA1 002991338 Q87KD3_nD2 Q87KD3 RSMB_VIBPA VP3044 rsmB Ribosomal RNA small subunit methyltransferase B 3043 131-425 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001179757 e2frxA2 002991339 Q87TL1_nD4 Q87TL1 Q87TL1_VIBPA VP0058 58 201-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002391036 e5yszA3 002991340 Q87TL1_nD3 Q87TL1 Q87TL1_VIBPA VP0058 58 91-200,331-360 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001547491 e3kjxA3 002991341 Q87TL1_nD2 Q87TL1 Q87TL1_VIBPA VP0058 58 46-90 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002391034 e5yszA1 002991342 Q87TL1_nD1 Q87TL1 Q87TL1_VIBPA VP0058 58 21-45 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000369575 e3ihuB1 002991343 Q87JS0_nD1 Q87JS0 Q87JS0_VIBPA VPA0178 DUF469 family protein 3257 16-110 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000136944 e3k5pA1 002991344 Q87NL3_nD1 Q87NL3 Q87NL3_VIBPA VP1855 ABC transporter ATP-binding protein 1855 6-175 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002512978 e6r2gA1 002991345 Q87QY1_nD1 Q87QY1 LFTR_VIBPA VP1018 aat Leucyl/phenylalanyl-tRNA--protein transferase 1018 6-230 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011112 e2cxaA1 002991346 Q87RD4_nD2 Q87RD4 Q87RD4_VIBPA VP0863 VOC family protein 863 111-199 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000005722 e1k4nA2 002991347 Q87RD4_nD1 Q87RD4 Q87RD4_VIBPA VP0863 VOC family protein 863 1-110 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000005721 e1k4nA1 002991348 Q87M14_nD1 Q87M14 Q87M14_VIBPA VP2444 2444 1-165 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001411711 e4rs2B1 002991349 Q87JF3_nD2 Q87JF3 Q87JF3_VIBPA VPA0300 3379 246-495 f a.3 10 10.18 10.18.1 beta sandwiches jelly-roll VPA0735-like VPA0735-like 001258824 e3vb9B3 002991350 Q87JF3_nD1 Q87JF3 Q87JF3_VIBPA VPA0300 3379 36-245 f a.3 10 10.18 10.18.1 beta sandwiches jelly-roll VPA0735-like VPA0735-like 001258825 e3vb9B4 002991351 Q87I79_nD2 Q87I79 Q87I79_VIBPA VPA0727 3806 276-360 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 000151264 e2lfvA1 002991352 Q87I79_nD1 Q87I79 Q87I79_VIBPA VPA0727 3806 6-230 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002774007 e6vbv41 002991353 Q87T79_nD1 Q87T79 Q87T79_VIBPA VP0191 191 36-310 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002099352 e5l0sA1 002991354 Q87LQ5_nD1 Q87LQ5 SURE_VIBPA VP2556 surE 5'-nucleotidase SurE 2556 1-240 f a.17 7527 7527.1 7527.1.1 a/b three-layered sandwiches SurE-like/CoA-transferase family III (CaiB/BaiF) SurE-like/CoA-transferase family III (CaiB/BaiF) SurE-like/CoA-transferase family III (CaiB/BaiF) 000431812 e3ty2B1 002991355 Q87L54_nD1 Q87L54 CAPP_VIBPA VP2761 ppc Phosphoenolpyruvate carboxylase 2760 11-875 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008663 e1jqnA1 002991356 Q87SU1_nD3 Q87SU1 Q87SU1_VIBPA VP0331 ThrE domain-containing protein 331 126-260 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 002488979 e4m5bA1 002991357 Q87SU1_nD1 Q87SU1 Q87SU1_VIBPA VP0331 ThrE domain-containing protein 331 6-85 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 001031959 e3ivcA1 002991358 Q87SU1_nD2 Q87SU1 Q87SU1_VIBPA VP0331 ThrE domain-containing protein 331 86-120 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 002772104 e7ok0Q1 002991359 Q87LL1_nD2 Q87LL1 PGK_VIBPA VP2600 pgk Phosphoglycerate kinase 2599 171-385 f a.17 7533 7533.1 7533.1.1 a/b three-layered sandwiches Phosphoglycerate kinase domain 2 Phosphoglycerate kinase domain 2 Phosphoglycerate kinase domain 2 002499580 e6hxeA2 002991360 Q87LL1_nD1 Q87LL1 PGK_VIBPA VP2600 pgk Phosphoglycerate kinase 2599 1-170 f a.17 7532 7532.1 7532.1.1 a/b three-layered sandwiches Phosphoglycerate kinase domain 1 Phosphoglycerate kinase domain 1 Phosphoglycerate kinase domain 1 001945041 e4feyA2 002991361 Q87SC7_nD1 Q87SC7 GRCA_VIBPA VP0497 grcA Autonomous glycyl radical cofactor 497 1-125 f a.21 7090 7090.1 7090.1.1 extended segments Glycyl radical domain Glycyl radical domain Glycyl radical domain 002630430 e6lonA2 002991362 Q87N33_nD1 Q87N33 Q87N33_VIBPA VP2042 OMP_b-brl domain-containing protein 2042 26-195 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002991363 Q87MC9_nD1 Q87MC9 Q87MC9_VIBPA VP2327 KfrA_N domain-containing protein 2327 6-55 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002499684 e6o5cA3 002991364 Q87RH6_nD2 Q87RH6 Q87RH6_VIBPA VP0818 Probable membrane transporter protein 818 66-200 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002387848 e6cb2A2 002991365 Q87RH6_nD1 Q87RH6 Q87RH6_VIBPA VP0818 Probable membrane transporter protein 818 1-65,201-245 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002991366 Q87QS9_nD2 Q87QS9 Q87QS9_VIBPA VP1070 alaE L-alanine exporter AlaE 1070 36-140 f a.10 3843 3843.1 3843.1.1 alpha complex topology NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K 002791537 e7ar9K1 002991367 Q87QS9_nD1 Q87QS9 Q87QS9_VIBPA VP1070 alaE L-alanine exporter AlaE 1070 11-35 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 001153052 e1y2mB5 002991368 Q87MY3_nD1 Q87MY3 Q87MY3_VIBPA VP2093 2093 1-80 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006202 e1fm0D1 002991369 Q87JN5_nD1 Q87JN5 Q87JN5_VIBPA VPA0213 C factor cell-cell signaling protein 3292 21-70 f a.11 4076 4076.3 4076.3.1 a+b two layers L9 N-domain-like GINS/PriA/YqbF domain GINS/PriA/YqbF domain 000218750 e2lsmA1 002991370 Q87PX8_nD1 Q87PX8 Q87PX8_VIBPA VP1372 Inner membrane protein 1372 26-60 f a.21 1084 1084.1 1084.1.1 extended segments Photosystem II reaction center W protein, chloroplastic Photosystem II reaction center W protein, chloroplastic Photosystem II reaction center W protein, chloroplastic 001879719 e3jcuw1 002991371 Q87QU4_nD1 Q87QU4 Q87QU4_VIBPA VP1055 Cyd operon protein YbgE 1055 1-100 f a.7 632 632.11 632.11.1 alpha bundles immunoglobulin/albumin-binding domain-like AF1782-like AF1782-like 001124569 e4fzoA1 002991372 Q87NA5_nD2 Q87NA5 YCIB_VIBPA VP1970 yciB Inner membrane-spanning protein YciB 1970 71-170 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000150812 e4avmA1 002991373 Q87NA5_nD1 Q87NA5 YCIB_VIBPA VP1970 yciB Inner membrane-spanning protein YciB 1970 1-70 f a.7 3937 3937.1 3937.1.1 alpha bundles Connexin 26 Connexin 26 Connexin 26 002584086 e6vd7A1 002991374 Q87J57_nD1 Q87J57 Q87J57_VIBPA VPA0396 3475 26-105 f a.11 872 872.3 872.3.1 a+b two layers Dodecin subunit-like YbjQ-like YbjQ-like 000416478 e2l8yA1 002991375 Q87KN6_nD1 Q87KN6 Q87KN6_VIBPA VP2941 2940 6-80 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000140065 e3lsjA1 002991376 Q87KN6_nD2 Q87KN6 Q87KN6_VIBPA VP2941 2940 81-210 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000140066 e3lsjA2 002991377 Q87IY2_nD1 Q87IY2 Q87IY2_VIBPA VPA0474 3553 1-175 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002514907 e6e1xD1 002991378 Q87T61_nD2 Q87T61 Q87T61_VIBPA VP0209 209 191-335 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002464320 e6mgbA1 002991379 Q87T61_nD1 Q87T61 Q87T61_VIBPA VP0209 209 1-190 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717734 e2iy7A1 002991380 Q87KA9_nD1 Q87KA9 ATPE_VIBPA VP3068 atpC ATP synthase epsilon chain 3067 6-85 f a.3 56 56.1 56.1.1 beta sandwiches Epsilon subunit of F1F0-ATP synthase-N Epsilon subunit of F1F0-ATP synthase-N Epsilon subunit of F1F0-ATP synthase-N 000164898 e2e5yA1 002991381 Q87KA9_nD2 Q87KA9 ATPE_VIBPA VP3068 atpC ATP synthase epsilon chain 3067 91-135 f a.7 192 192.6 192.6.1 alpha bundles Long alpha-hairpin Epsilon subunit of F1F0-ATP synthase C-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 001918988 e5lqxH1 002991382 Q87SJ8_nD1 Q87SJ8 Q87SJ8_VIBPA VP0425 425 21-435 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 000411263 e2xmnC1 002991383 Q87SZ3_nD1 Q87SZ3 Q87SZ3_VIBPA VP0277 secY Protein translocase subunit SecY 277 16-435 f a.10 5061 5061.1 5061.1.1 alpha complex topology Preprotein translocase SecY subunit Preprotein translocase SecY subunit Preprotein translocase SecY subunit 001714787 e5awwY1 002991384 Q87G34_nD1 Q87G34 Q87G34_VIBPA VPA1483 4562 11-90,116-275 f a.10 3646 3646.1 3646.1.1 alpha complex topology T-component of energy-coupling factor (ECF) transporters T-component of energy-coupling factor (ECF) transporters T-component of energy-coupling factor (ECF) transporters 002771802 e7nnuD1 002991385 Q87IE5_nD1 Q87IE5 Q87IE5_VIBPA VPA0662 3741 1-110 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001681572 e4wlwA1 002991386 Q87T84_nD1 Q87T84 RL33_VIBPA VP0186 rpmG 50S ribosomal protein L33 186 6-55 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002756377 e7aneU1 002991387 Q87S37_nD1 Q87S37 QUEA_VIBPA VP0587 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase 587 61-180 f a.1 1 1.1 1.1.12 beta barrels cradle loop barrel RIFT-related barrel domain in QueA-like proteins 000022006 e1vkyB1 002991388 Q87S37_nD2 Q87S37 QUEA_VIBPA VP0587 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase 587 1-60,181-345 f a.17 4013 4013.1 4013.1.1 a/b three-layered sandwiches a/b domain in QueA-like proteins (Pfam 02547) a/b domain in QueA-like proteins (Pfam 02547) a/b domain in QueA-like proteins (Pfam 02547) 000113928 e1vkyB2 002991389 Q87IS7_nD1 Q87IS7 Q87IS7_VIBPA VPA0529 Branched-chain amino acid ABC transporter 3608 36-103 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002821843 e7s8xB1 002991390 Q87TJ3_nD1 Q87TJ3 Q87TJ3_VIBPA VP0076 Universal stress protein 76 1-140 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009855 e1jmvA1 002991391 O82855_nD1 O82855 NORM_VIBPA VP1479 norM Multidrug resistance protein NorM 1479 6-230 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002123526 e5yckA1 002991392 O82855_nD2 O82855 NORM_VIBPA VP1479 norM Multidrug resistance protein NorM 1479 231-455 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002991393 Q87IZ6_nD1 Q87IZ6 Q87IZ6_VIBPA VPA0460 3539 1-70 f a.6 198 198.3 198.3.1 alpha arrays Saposin-like PAS factor PAS factor 000184529 e2b8iA1 002991394 Q87MJ3_nD1 Q87MJ3 Q87MJ3_VIBPA VP2262 2262 1-135 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 001695493 e5de0B2 002991395 Q87MJ3_nD2 Q87MJ3 Q87MJ3_VIBPA VP2262 2262 136-295 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 001695492 e5de0B1 002991396 Q87MD9_nD3 Q87MD9 EFTS_VIBPA VP2317 tsf Elongation factor Ts 2317 141-260 f a.11 230 230.3 230.3.1 a+b two layers T-fold Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 000005767 e1efuB3 002991397 Q87MD9_nD2 Q87MD9 EFTS_VIBPA VP2317 tsf Elongation factor Ts 2317 56-135 f a.11 230 230.3 230.3.1 a+b two layers T-fold Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 000005769 e1xb2B2 002991398 Q87MD9_nD1 Q87MD9 EFTS_VIBPA VP2317 tsf Elongation factor Ts 2317 6-55 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 000003093 e1efuB1 002991399 Q87G78_nD1 Q87G78 Q87G78_VIBPA VPA1439 Mechanosensitive ion channel protein MscS 4518 1-90 f a.7 6158 6158.1 6158.1.1 alpha bundles Nucleoporin p58/p45 helical region Nucleoporin p58/p45 helical region Nucleoporin p58/p45 helical region 001710813 e4jo7G1 002991400 Q87G78_nD2 Q87G78 Q87G78_VIBPA VPA1439 Mechanosensitive ion channel protein MscS 4518 96-170 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002619179 e6lypB3 002991401 Q87G78_nD3 Q87G78 Q87G78_VIBPA VPA1439 Mechanosensitive ion channel protein MscS 4518 171-285 f a.11 304 304.39 304.39.1 a+b two layers Alpha-beta plaits Mechanosensitive channel protein MscS (YggB), C-terminal domain Mechanosensitive channel protein MscS (YggB), C-terminal domain 001564990 e5ajiA3 002991402 Q87IF3_nD1 Q87IF3 Q87IF3_VIBPA VPA0654 GP-PDE domain-containing protein 3732 96-120 f a.19 139 139.1 139.1.1 few secondary structure elements Multiheme cytochromes Cytochrome c3-like Cytochrome c3-like 001644188 e2vr0F1 002991403 Q87FT9_nD2 Q87FT9 Q87FT9_VIBPA VPA1589 4668 91-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600822 e3hhfA1 002991404 Q87FT9_nD1 Q87FT9 Q87FT9_VIBPA VPA1589 4668 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002991405 Q87QJ9_nD1 Q87QJ9 SYC_VIBPA VP1150 cysS Cysteine--tRNA ligase 1150 6-275 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002488755 e4eg7B1 002991406 Q87QJ9_nD2 Q87QJ9 SYC_VIBPA VP1150 cysS Cysteine--tRNA ligase 1150 276-460 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002526275 e1u0bB1 002991407 Q87IZ4_nD1 Q87IZ4 Q87IZ4_VIBPA VPA0462 HTH arsR-type domain-containing protein 3541 46-150 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000219927 e4g6qA1 002991408 Q87LH9_nD1 Q87LH9 YDJC_VIBPA VP2633 Carbohydrate deacetylase 2632 1-245 f a.16 2002 2002.3 2002.3.1 a/b barrels TIM beta/alpha-barrel Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 000009006 e2i5iA1 002991409 Q87RH2_nD1 Q87RH2 Q87RH2_VIBPA VP0824 824 1-220 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001139701 e4ikvA1 002991410 Q87RH2_nD2 Q87RH2 Q87RH2_VIBPA VP0824 824 236-460 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002991411 Q87KB0_nD1 Q87KB0 GLMU_VIBPA VP3067 glmU Bifunctional protein GlmU 3066 1-245 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001181178 e1fxjA3 002991412 Q87KB0_nD2 Q87KB0 GLMU_VIBPA VP3067 glmU Bifunctional protein GlmU 3066 246-435 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 000431810 e3twdB1 002991413 Q87QZ4_nD1 Q87QZ4 Q87QZ4_VIBPA VP1004 Primosomal protein 1004 12-50 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 000164297 e2do6A1 002991414 Q87I20_nD1 Q87I20 Q87I20_VIBPA VPA0786 DUF2938 domain-containing protein 3865 1-45,67-160 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 001314817 e4k0eC1 002991415 Q87L76_nD1 Q87L76 Q87L76_VIBPA VP2736 Salt-induced outer membrane protein 2735 36-254 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002991416 Q79YZ0_nD1 Q79YZ0 Q79YZ0_VIBPA VP0776 Flagellar basal-body rod protein FlgC 776 1-135 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002991417 Q87LC4_nD1 Q87LC4 NTPPA_VIBPA VP2688 dTTP/UTP pyrophosphatase 2687 6-189 f a.17 7504 7504.1 7504.1.1 a/b three-layered sandwiches ITPase-like ITPase-like ITPase-like 001833804 e4p0eA1 002991418 Q87S45_nD1 Q87S45 CUTC_VIBPA VP0579 cutC PF03932 family protein CutC 579 1-210,231-245 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000137053 e3iwpA1 002991419 Q87KA3_nD1 Q87KA3 ATP6_VIBPA VP3075 atpB ATP synthase subunit a 3074 11-265 f a.7 5045 5045.1 5045.1.1 alpha bundles F1F0 ATP synthase subunit A F1F0 ATP synthase subunit A F1F0 ATP synthase subunit A 002632584 e6pqva1 002991420 Q87FE2_nD2 Q87FE2 Q87FE2_VIBPA VPA1737 Small-conductance mechanosensitive channel 4816 111-175 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001564989 e5ajiA2 002991421 Q87FE2_nD1 Q87FE2 Q87FE2_VIBPA VPA1737 Small-conductance mechanosensitive channel 4816 16-85 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002566250 e6pwpF1 002991422 Q87G16_nD3 Q87G16 Q87G16_VIBPA VPA1501 4580 181-250 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002832655 e7dluA3 002991423 Q87G16_nD4 Q87G16 Q87G16_VIBPA VPA1501 4580 251-355 f a.11 304 304.39 304.39.1 a+b two layers Alpha-beta plaits Mechanosensitive channel protein MscS (YggB), C-terminal domain Mechanosensitive channel protein MscS (YggB), C-terminal domain 001564990 e5ajiA3 002991424 Q87G16_nD2 Q87G16 Q87G16_VIBPA VPA1501 4580 96-180 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002654049 e6vxpF1 002991425 Q87G16_nD1 Q87G16 Q87G16_VIBPA VPA1501 4580 16-95 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 001252018 e3udcG6 002991426 Q87S35_nD1 Q87S35 Q87S35_VIBPA VP0589 yajC Sec translocon accessory complex subunit YajC 589 21-45 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002991427 Q87S35_nD2 Q87S35 Q87S35_VIBPA VP0589 yajC Sec translocon accessory complex subunit YajC 589 46-105 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001252017 e3udcG5 002991428 Q87IA0_nD1 Q87IA0 Q87IA0_VIBPA VPA0706 3785 6-450 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002991429 Q87IM3_nD1 Q87IM3 Q87IM3_VIBPA VPA0583 3662 11-220 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002991430 Q87IM3_nD2 Q87IM3 Q87IM3_VIBPA VPA0583 3662 221-395 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001117723 e4bujA2 002991431 Q87ML7_nD1 Q87ML7 Q87ML7_VIBPA VP2214 2214 46-235 f a.6 3466 3466.1 3466.1.1 alpha arrays Phospholipid translocation channel MlaA Phospholipid translocation channel MlaA Phospholipid translocation channel MlaA 002322749 e5nupF1 002991432 Q87K94_nD1 Q87K94 Q87K94_VIBPA VPA0004 3083 21-290 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002991433 Q87FQ0_nD1 Q87FQ0 Q87FQ0_VIBPA VPA1628 PTS EIIB type-1 domain-containing protein 4707 21-95 f a.11 306 306.1 306.1.1 a+b two layers Glucose permease domain IIB-like Glucose permease domain IIB Glucose permease domain IIB 000351323 e3bp3B1 002991434 Q87P77_nD3 Q87P77 Q87P77_VIBPA VP1641 1641 391-460 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002635601 e6uo8B3 002991435 Q87P77_nD2 Q87P77 Q87P77_VIBPA VP1641 1641 171-390 f a.7 180 180.1 180.1.1 alpha bundles Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase 001255625 e3bb0A3 002991436 Q87P77_nD1 Q87P77 Q87P77_VIBPA VP1641 1641 11-160 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 002392999 e6hixAj1 002991437 Q87MV7_nD2 Q87MV7 Q87MV7_VIBPA VP2124 asd Aspartate-semialdehyde dehydrogenase 2124 131-350 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000077344 e1pquA1 002991438 Q87MV7_nD1 Q87MV7 Q87MV7_VIBPA VP2124 asd Aspartate-semialdehyde dehydrogenase 2124 1-130,351-370 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001016758 e3pzrA2 002991439 Q87SY6_nD1 Q87SY6 Q87SY6_VIBPA VP0286 LysM domain-containing protein 286 36-70 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 002131732 e3jc9Oa2 002991440 Q87SY6_nD2 Q87SY6 Q87SY6_VIBPA VP0286 LysM domain-containing protein 286 116-199 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 001649977 e2gu1A3 002991441 Q87M66_nD1 Q87M66 Q87M66_VIBPA VP2392 2392 6-110 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000169670 e3ersX1 002991442 Q87SK8_nD1 Q87SK8 Q87SK8_VIBPA VP0415 415 1-190 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002128573 e5uj7E1 002991443 Q87SK8_nD2 Q87SK8 Q87SK8_VIBPA VP0415 415 191-270 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000003428 e1fnnA2 002991444 Q87SK8_nD4 Q87SK8 Q87SK8_VIBPA VP0415 415 456-525 f a.6 144 144.1 144.1.1 alpha arrays PGBD-like PGBD-like PGBD-like 000224034 e4g54A2 002991445 Q87SK8_nD3 Q87SK8 Q87SK8_VIBPA VP0415 415 346-455,526-535 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 000224033 e4g54A1 002991446 Q87JV5_nD2 Q87JV5 Q87JV5_VIBPA VPA0143 YibL family ribosome-associated protein 3222 6-15,66-130 f a.11 3331 3331.1 3331.1.1 a+b two layers Uncharacterized protein yibL Uncharacterized protein yibL Uncharacterized protein yibL 000184768 e2lf0A1 002991447 Q87JV5_nD1 Q87JV5 Q87JV5_VIBPA VPA0143 YibL family ribosome-associated protein 3222 16-65 f a.7 3711 3711.1 3711.1.1 alpha bundles LTXXQ motif family protein LTXXQ motif family protein LTXXQ motif family protein 001068647 e3layJ1 002991448 Q87P04_nD3 Q87P04 Q87P04_VIBPA VP1714 Biotin_lipoyl_2 domain-containing protein 1714 26-40,241-325 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145751 e3lnnA2 002991449 Q87P04_nD1 Q87P04 Q87P04_VIBPA VP1714 Biotin_lipoyl_2 domain-containing protein 1714 41-80,206-240 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002991450 Q87P04_nD2 Q87P04 Q87P04_VIBPA VP1714 Biotin_lipoyl_2 domain-containing protein 1714 81-205 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002991451 Q87R15_nD2 Q87R15 LPXK_VIBPA VP0983 lpxK Tetraacyldisaccharide 4'-kinase 983 211-310 f a.17 7591 7591.1 7591.1.1 a/b three-layered sandwiches Tetraacyldisaccharide 4'-kinase C-terminal domain Tetraacyldisaccharide 4'-kinase C-terminal domain Tetraacyldisaccharide 4'-kinase C-terminal domain 001738171 e4itmA2 002991452 Q87R15_nD1 Q87R15 LPXK_VIBPA VP0983 lpxK Tetraacyldisaccharide 4'-kinase 983 11-210,311-335 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001738170 e4itmA1 002991453 Q87IN7_nD1 Q87IN7 Q87IN7_VIBPA VPA0569 3648 6-295 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002991454 Q87J09_nD2 Q87J09 Q87J09_VIBPA VPA0446 3525 251-410 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001088841 e4b2nA2 002991455 Q87J09_nD1 Q87J09 Q87J09_VIBPA VPA0446 3525 36-245 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 002636364 e6v59A2 002991456 Q87JC2_nD2 Q87JC2 Q87JC2_VIBPA VPA0331 3410 81-293 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002991457 Q87JC2_nD1 Q87JC2 Q87JC2_VIBPA VPA0331 3410 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002991458 Q87TP4_nD1 Q87TP4 TUSA_VIBPA VP0025 tusA Sulfur carrier protein TusA 25 6-80 f a.11 328 328.5 328.5.1 a+b two layers IF3-like SirA-like SirA-like 000005633 e1dcjA1 002991459 Q87QN5_nD1 Q87QN5 BIOF_VIBPA VP1114 bioF 8-amino-7-oxononanoate synthase 1114 46-290 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 000010776 e1bs0A2 002991460 Q87QN5_nD2 Q87QN5 BIOF_VIBPA VP1114 bioF 8-amino-7-oxononanoate synthase 1114 291-380 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001683274 e2x8uB1 002991461 Q87SJ7_nD1 Q87SJ7 Q87SJ7_VIBPA VP0426 ADP-ribose pyrophosphatase 426 11-205 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 000006231 e1g0sA1 002991462 Q87JY8_nD1 Q87JY8 Q87JY8_VIBPA VPA0110 3189 1-235 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000162767 e2nyvA1 002991463 Q87S23_nD1 Q87S23 Q87S23_VIBPA VP0601 2Fe-2S ferredoxin 601 1-105 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006110 e1i7hA1 002991464 Q87JQ5_nD2 Q87JQ5 Q87JQ5_VIBPA VPA0193 DUF2913 family protein 3272 101-203 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 000197096 e2rjzA1 002991465 Q87JQ5_nD1 Q87JQ5 Q87JQ5_VIBPA VPA0193 DUF2913 family protein 3272 6-95 f a.6 7010 7010.1 7010.1.1 alpha arrays Activation-binding domain of RNA polymerase II mediator Activation-binding domain of RNA polymerase II mediator Activation-binding domain of RNA polymerase II mediator 002387832 e6alyA1 002991466 Q87PR6_nD1 Q87PR6 Q87PR6_VIBPA VP1435 1435 6-415 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 002760415 e7dswA1 002991467 Q87T99_nD1 Q87T99 Q87T99_VIBPA VP0171 171 36-125 f 002991468 Q87T99_nD2 Q87T99 Q87T99_VIBPA VP0171 171 6-35,126-340 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002991469 Q87HX4_nD2 Q87HX4 Q87HX4_VIBPA VPA0832 3911 96-185 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002321592 e3pddA3 002991470 Q87HX4_nD5 Q87HX4 Q87HX4_VIBPA VPA0832 3911 631-750 f a.11 284 284.2 284.2.1 a+b two layers FKBP-like Chitinase insertion domain Chitinase insertion domain 001870465 e4txgA2 002991471 Q87HX4_nD1 Q87HX4 Q87HX4_VIBPA VPA0832 3911 31-85 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001240751 e4mb3A8 002991472 Q87HX4_nD6 Q87HX4 Q87HX4_VIBPA VPA0832 3911 841-980 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 001870466 e4txgA3 002991473 Q87HX4_nD7 Q87HX4 Q87HX4_VIBPA VPA0832 3911 1001-1054 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 000008553 e1aiwA1 002991474 Q87HX4_nD3 Q87HX4 Q87HX4_VIBPA VPA0832 3911 196-280 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002321592 e3pddA3 002991475 Q87HX4_nD4 Q87HX4 Q87HX4_VIBPA VPA0832 3911 281-630,731-835 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001870464 e4txgA1 002991476 Q87GX1_nD1 Q87GX1 Q87GX1_VIBPA VPA1194 Lipoprotein 4273 36-285 f a.7 3711 3711.1 3711.1.1 alpha bundles LTXXQ motif family protein LTXXQ motif family protein LTXXQ motif family protein 001032972 e3qzcB1 002991477 Q87NH4_nD2 Q87NH4 Q87NH4_VIBPA VP1894 DUF997 family protein 1894 66-90 f a.7 1076 1076.1 1076.1.1 alpha bundles Hypothetical protein RPA3313 Hypothetical protein RPA3313 Hypothetical protein RPA3313 001121961 e4cadI1 002991478 Q87NH4_nD1 Q87NH4 Q87NH4_VIBPA VP1894 DUF997 family protein 1894 31-65 f a.21 5074 5074.1 5074.1.1 extended segments Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits Bacterial light-harvesting complex subunits 002740646 e7c9r91 002991479 Q87KF8_nD1 Q87KF8 Q87KF8_VIBPA VP3019 Bcr/CflA family efflux transporter 3018 1-180 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002137981 e6ei3A2 002991480 Q87KF8_nD2 Q87KF8 Q87KF8_VIBPA VP3019 Bcr/CflA family efflux transporter 3018 186-380 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002991481 Q87FM4_nD1 Q87FM4 Q87FM4_VIBPA VPA1655 4734 26-175 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050094 e3eiwA2 002991482 Q87FM4_nD2 Q87FM4 Q87FM4_VIBPA VPA1655 4734 176-305 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050093 e3eiwA1 002991483 Q87RV1_nD1 Q87RV1 CRL_VIBPA VP0675 crl Sigma factor-binding protein Crl 675 11-125 f a.11 331 331.20 331.20.1 a+b two layers TBP-like Curlin genes transcriptional regulator Curlin genes transcriptional regulator 000428162 e3rpjB1 002991484 Q87HY0_nD4 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 321-400 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002991485 Q87HY0_nD7 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 631-790 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002991486 Q87HY0_nD3 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 141-260 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001506007 e3o1jB1 002991487 Q87HY0_nD5 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 406-545 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002721694 e7a6pA1 002991488 Q87HY0_nD2 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 51-140,261-300 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001225256 e3i9wA3 002991489 Q87HY0_nD6 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 561-630 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001934909 e5iujE2 002991490 Q87HY0_nD1 Q87HY0 Q87HY0_VIBPA VPA0826 histidine kinase 3905 16-50 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 000162589 e2d4uA1 002991491 Q87FN7_nD2 Q87FN7 Q87FN7_VIBPA VPA1641 4720 456-535 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 002100983 e5h06B1 002991492 Q87FN7_nD1 Q87FN7 Q87FN7_VIBPA VPA1641 4720 36-455 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002100984 e5h06B2 002991493 Q87SL0_nD2 Q87SL0 UPPP_VIBPA VP0413 uppP Undecaprenyl-diphosphatase 413 66-210 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002387848 e6cb2A2 002991494 Q87SL0_nD1 Q87SL0 UPPP_VIBPA VP0413 uppP Undecaprenyl-diphosphatase 413 1-60,211-265 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002991495 Q87GY9_nD4 Q87GY9 Q87GY9_VIBPA VPA1176 EAL domain-containing protein 4255 501-763 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002991496 Q87GY9_nD3 Q87GY9 Q87GY9_VIBPA VPA1176 EAL domain-containing protein 4255 326-500 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002991497 Q87GY9_nD1 Q87GY9 Q87GY9_VIBPA VPA1176 EAL domain-containing protein 4255 16-295 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002524055 e6pzjA1 002991498 Q87GY9_nD2 Q87GY9 Q87GY9_VIBPA VPA1176 EAL domain-containing protein 4255 6-15,296-325 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002721694 e7a6pA1 002991499 Q87LS3_nD1 Q87LS3 Q87LS3_VIBPA VP2538 SLT_4 domain-containing protein 2538 26-200 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001108140 e4luqA2 002991500 Q87RM0_nD2 Q87RM0 Q87RM0_VIBPA VP0758 758 61-125 f a.11 304 304.3 304.3.1 a+b two layers Alpha-beta plaits HMA-related HMA, heavy metal-associated domain 000160419 e2aj0A1 002991501 Q87RM0_nD5 Q87RM0 Q87RM0_VIBPA VP0758 758 241-395,506-580,856-910 f a.7 5073 5073.1 5073.1.3 alpha bundles Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain-related Potassium-transporting ATPase subunit KdpB transmembrane domain 002782661 e7nnpB1 002991502 Q87RM0_nD1 Q87RM0 Q87RM0_VIBPA VP0758 758 6-60 f a.11 304 304.3 304.3.1 a+b two layers Alpha-beta plaits HMA-related HMA, heavy metal-associated domain 002409712 e5zngA1 002991503 Q87RM0_nD6 Q87RM0 Q87RM0_VIBPA VP0758 758 611-725 f a.14 267 267.1 267.1.1 a+b complex topology Metal cation-transporting ATPase, ATP-binding domain Metal cation-transporting ATPase, ATP-binding domain Metal cation-transporting ATPase, ATP-binding domain 001137275 e4bbjA2 002991504 Q87RM0_nD7 Q87RM0 Q87RM0_VIBPA VP0758 758 496-505,581-610,726-855 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 002822336 e7vh5D3 002991505 Q87RM0_nD3 Q87RM0 Q87RM0_VIBPA VP0758 758 171-240 f a.11 304 304.3 304.3.1 a+b two layers Alpha-beta plaits HMA-related HMA, heavy metal-associated domain 001289841 e3j09A2 002991506 Q87RM0_nD4 Q87RM0 Q87RM0_VIBPA VP0758 758 396-495 f a.3 10 10.13 10.13.1 beta sandwiches jelly-roll Calcium ATPase, transduction domain A Calcium ATPase, transduction domain A 000161661 e2hc8A1 002991507 Q87J69_nD1 Q87J69 Q87J69_VIBPA VPA0384 Enoyl reductase (ER) domain-containing protein 3463 1-165,291-345 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 002810754 e7vemA2 002991508 Q87J69_nD2 Q87J69 Q87J69_VIBPA VPA0384 Enoyl reductase (ER) domain-containing protein 3463 166-290 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001160997 e4ilkA1 002991509 Q87G59_nD1 Q87G59 PSTB2_VIBPA VPA1458 pstB2 Phosphate import ATP-binding protein PstB 2 4537 1-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002991510 Q87ND6_nD2 Q87ND6 Q87ND6_VIBPA VP1932 gyrA DNA gyrase subunit A 1932 161-345 f a.11 4014 4014.1 4014.1.1 a+b two layers a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase a+b domain in type II DNA topoisomerase 000374303 e3ilwA3 002991511 Q87ND6_nD1 Q87ND6 Q87ND6_VIBPA VP1932 gyrA DNA gyrase subunit A 1932 11-160 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001262218 e3rafA5 002991512 Q87ND6_nD4 Q87ND6 Q87ND6_VIBPA VP1932 gyrA DNA gyrase subunit A 1932 526-840 f a.4 5 5.2 5.2.1 beta duplicates or obligate multimers beta-propeller-like beta-pinwheel beta-pinwheel 000002178 e1suuA1 002991513 Q87ND6_nD3 Q87ND6 Q87ND6_VIBPA VP1932 gyrA DNA gyrase subunit A 1932 346-525 f a.7 4016 4016.1 4016.1.1 alpha bundles alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase alpha-helical domain in type II DNA topoisomerase 002549320 e6rkwA2 002991514 Q87NK7_nD1 Q87NK7 Q87NK7_VIBPA VP1861 N-acetyltransferase domain-containing protein 1861 16-170 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011056 e1qsmA1 002991515 Q87QV1_nD1 Q87QV1 RUVC_VIBPA VP1048 ruvC Crossover junction endodeoxyribonuclease RuvC 1048 1-165 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002583415 e6lw3A1 002991516 Q87TM3_nD1 Q87TM3 Q87TM3_VIBPA VP0046 Secreted protein 46 31-55 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002608170 e6tz4O1 002991517 Q87JR3_nD1 Q87JR3 Q87JR3_VIBPA VPA0185 Branched-chain amino acid transport system carrier protein 3264 6-415 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002807376 e7sl9A1 002991518 Q87P18_nD1 Q87P18 Q87P18_VIBPA VP1700 1700 31-135 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000426959 e2yjlB1 002991519 Q87PL7_nD1 Q87PL7 Q87PL7_VIBPA VP1485 1485 31-155 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 000167359 e2k1gA1 002991520 Q87IG5_nD2 Q87IG5 Q87IG5_VIBPA VPA0641 3720 81-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002417223 e5ydwA1 002991521 Q87IG5_nD1 Q87IG5 Q87IG5_VIBPA VPA0641 3720 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002991522 Q87KV0_nD1 Q87KV0 Q87KV0_VIBPA VP2875 2874 6-190 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002137981 e6ei3A2 002991523 Q87KV0_nD2 Q87KV0 Q87KV0_VIBPA VP2875 2874 191-390 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002582149 e6e9cA1 002991524 Q87HN1_nD1 Q87HN1 COBQ_VIBPA VPA0932 cobQ Cobyric acid synthase 4011 6-235,456-483 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000142256 e3of5A1 002991525 Q87HN1_nD2 Q87HN1 COBQ_VIBPA VPA0932 cobQ Cobyric acid synthase 4011 241-450 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 002401246 e6fqbG1 002991526 Q87FD5_nD1 Q87FD5 PTYBC_VIBPA VPA1744 murP PTS system N-acetylmuramic acid-specific EIIBC component 4823 6-85 f a.11 306 306.1 306.1.1 a+b two layers Glucose permease domain IIB-like Glucose permease domain IIB Glucose permease domain IIB 000375166 e3ipjB1 002991527 Q87FD5_nD2 Q87FD5 PTYBC_VIBPA VPA1744 murP PTS system N-acetylmuramic acid-specific EIIBC component 4823 111-210,231-480 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002991528 Q87LP7_nD4 Q87LP7 Q87LP7_VIBPA VP2564 2563 496-560 f a.6 143 143.2 143.2.1 alpha arrays PABP domain-like Ribosomal protein L20 Ribosomal protein L20 001952310 e5j8aCR1 002991529 Q87LP7_nD3 Q87LP7 Q87LP7_VIBPA VP2564 2563 391-495 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 001838836 e5iqr83 002991530 Q87LP7_nD5 Q87LP7 Q87LP7_VIBPA VP2564 2563 591-660 f a.19 1077 1077.1 1077.1.1 few secondary structure elements RelA zinc-finger domain RelA zinc-finger domain RelA zinc-finger domain 001838837 e5iqr84 002991531 Q87LP7_nD2 Q87LP7 Q87LP7_VIBPA VP2564 2563 206-375 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 000006825 e2be3A1 002991532 Q87LP7_nD6 Q87LP7 Q87LP7_VIBPA VP2564 2563 661-739 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 002635479 e6u9hO2 002991533 Q87LP7_nD1 Q87LP7 Q87LP7_VIBPA VP2564 2563 11-205 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 002634175 e6s2tA1 002991534 Q87L14_nD1 Q87L14 Q87L14_VIBPA VP2803 Outer membrane protein assembly factor BamE 2802 38-120 f a.11 3148 3148.1 3148.1.1 a+b two layers putative secreted protein PA3611 putative secreted protein PA3611 putative secreted protein PA3611 002320715 e5zdhS1 002991535 Q87L28_nD1 Q87L28 Q87L28_VIBPA VP2788 2787 1-540 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002814626 e7msmx2 002991536 Q87L28_nD2 Q87L28 Q87L28_VIBPA VP2788 2787 541-639 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002991537 Q05939_nD1 Q05939 TOXS_VIBPA VP0819 toxS Transmembrane regulatory protein ToxS 819 26-170 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001402068 e4u3qB1 002991538 Q87QR2_nD3 Q87QR2 Q87QR2_VIBPA VP1087 Mrr_cat domain-containing protein 1087 336-475,511-520 f a.11 331 331.2 331.2.1 a+b two layers TBP-like Phosphoglucomutase, C-terminal domain Phosphoglucomutase, C-terminal domain 001149046 e4hjhA11 002991539 Q87QR2_nD4 Q87QR2 Q87QR2_VIBPA VP1087 Mrr_cat domain-containing protein 1087 531-665 f a.7 601 601.20 601.20.1 alpha bundles Four-helical up-and-down bundle Apolipophorin-III Apolipophorin-III 000003756 e1aepA1 002991540 Q87QR2_nD1 Q87QR2 Q87QR2_VIBPA VP1087 Mrr_cat domain-containing protein 1087 1-190 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000980171 e4f0pB2 002991541 Q87QR2_nD2 Q87QR2 Q87QR2_VIBPA VP1087 Mrr_cat domain-containing protein 1087 206-335 f a.11 295 295.1 295.1.1 a+b two layers ssDNA-binding transcriptional regulator domain-like ssDNA-binding transcriptional regulator domain ssDNA-binding transcriptional regulator domain 000005791 e2it9A1 002991542 Q87MG3_nD1 Q87MG3 Q87MG3_VIBPA VP2292 dnaQ DNA polymerase III subunit epsilon 2292 6-190 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000143696 e2xy8A1 002991543 Q87KX9_nD1 Q87KX9 EFP_VIBPA VP2845 efp Elongation factor P 2844 1-65 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000142633 e3oyyA3 002991544 Q87KX9_nD2 Q87KX9 EFP_VIBPA VP2845 efp Elongation factor P 2844 66-130 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000140391 e3a5zB1 002991545 Q87KX9_nD3 Q87KX9 EFP_VIBPA VP2845 efp Elongation factor P 2844 131-188 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002138151 e6enuw2 002991546 Q87HM5_nD1 Q87HM5 Q87HM5_VIBPA VPA0937 4017 1-30 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001789493 e3jc9Ml1 002991547 Q87TM0_nD1 Q87TM0 Q87TM0_VIBPA VP0049 49 41-95 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002543287 e6u84A2 002991548 Q87TM0_nD2 Q87TM0 Q87TM0_VIBPA VP0049 49 21-40,96-340 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002991549 Q87H22_nD1 Q87H22 Q87H22_VIBPA VPA1143 4222 72-320 f a.11 221 221.1 221.1.3 a+b two layers beta-Grasp Ubiquitin-related Sulfite oxidase, middle catalytic domain 000157373 e2blfA2 002991550 Q87H22_nD2 Q87H22 Q87H22_VIBPA VPA1143 4222 321-435 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000032745 e2a99A1 002991551 Q87IZ7_nD2 Q87IZ7 Q87IZ7_VIBPA VPA0458 Transporter 3537 106-320 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001893658 e5sytA1 002991552 Q87IZ7_nD1 Q87IZ7 Q87IZ7_VIBPA VPA0458 Transporter 3537 1-105 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001447963 e4uxvA3 002991553 Q87RW3_nD1 Q87RW3 Q87RW3_VIBPA VP0663 tadA tRNA-specific adenosine deaminase 663 1-150 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 000165278 e2nx8A1 002991554 Q87H81_nD2 Q87H81 Q87H81_VIBPA VPA1084 Autoinducer 2-binding periplasmic protein LuxP 4163 126-255 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002991555 Q87H81_nD1 Q87H81 Q87H81_VIBPA VPA1084 Autoinducer 2-binding periplasmic protein LuxP 4163 16-125,256-285 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001252785 e2ioyB2 002991556 Q87GG4_nD1 Q87GG4 Q87GG4_VIBPA VPA1352 BPH_3 domain-containing protein 4431 6-135 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 001018784 e4g6tA1 002991557 Q87LP4_nD7 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 656-795 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104748 e2v0nA3 002991558 Q87LP4_nD5 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 356-520 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001481140 e4pl9A1 002991559 Q87LP4_nD8 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 816-930 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002991560 Q87LP4_nD2 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 196-250 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001097252 e4gn0A2 002991561 Q87LP4_nD6 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 531-655 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104746 e2v0nA2 002991562 Q87LP4_nD4 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 296-355 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002568310 e6qrjA3 002991563 Q87LP4_nD3 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 251-280 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001392669 e4i5sB2 002991564 Q87LP4_nD1 Q87LP4 Q87LP4_VIBPA VP2567 Phosphorelay protein LuxU 2566 6-195 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002991565 Q87M49_nD1 Q87M49 Q87M49_VIBPA VP2409 Tetratricopeptide repeat protein 2409 26-338 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004560 e1w3bA1 002991566 Q87RR2_nD1 Q87RR2 GLYA1_VIBPA VP0715 glyA1 Serine hydroxymethyltransferase 1 715 6-415 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002619922 e6ti4C1 002991567 Q87GL7_nD1 Q87GL7 Q87GL7_VIBPA VPA1298 4377 6-130 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001872943 e3c8eA1 002991568 Q87GL7_nD2 Q87GL7 Q87GL7_VIBPA VPA1298 4377 131-280 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 001153699 e3c8eA4 002991569 Q87K81_nD3 Q87K81 Q87K81_VIBPA VPA0017 ABC transporter permease 3096 6-50,276-420 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002991570 Q87K81_nD1 Q87K81 Q87K81_VIBPA VPA0017 ABC transporter permease 3096 51-105,231-275 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 000146706 e3ftjA1 002991571 Q87K81_nD2 Q87K81 Q87K81_VIBPA VPA0017 ABC transporter permease 3096 106-230 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002991572 Q87JD3_nD1 Q87JD3 Q87JD3_VIBPA VPA0320 3399 71-174 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000138255 e3lhnA1 002991573 Q87HC7_nD1 Q87HC7 Q87HC7_VIBPA VPA1038 Type VI secretion system-associated protein TagF 4117 6-230 f a.12 223 223.9 223.9.1 a+b three layers Profilin-like Pa0076-like Pa0076-like 000324575 e2qnuB1 002991574 Q87PP9_nD1 Q87PP9 AZOR_VIBPA VP1452 azoR FMN-dependent NADH:quinone oxidoreductase 1452 1-194 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001108468 e4c0wA1 002991575 Q87MA5_nD1 Q87MA5 Q87MA5_VIBPA VP2352 2352 1-95 f a.11 327 327.2 327.2.1 a+b two layers Alpha-lytic protease prodomain-like BolA-like BolA-like 000187529 e1v60A1 002991576 Q87S89_nD1 Q87S89 LSPA_VIBPA VP0535 lspA Lipoprotein signal peptidase 535 11-169 f a.7 1046 1046.1 1046.1.1 alpha bundles Lipoprotein signal peptidase Lipoprotein signal peptidase Lipoprotein signal peptidase 002570541 e6rypA1 002991577 Q87RM6_nD1 Q87RM6 Q87RM6_VIBPA VP0752 DUF3149 domain-containing protein 752 11-35 f a.8 7002 7002.1 7002.1.1 alpha duplicates or obligate multimers TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B 002423082 e5v2sA4 002991578 Q87GT6_nD3 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 311-360 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002991579 Q87GT6_nD7 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 756-880 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104748 e2v0nA3 002991580 Q87GT6_nD4 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 361-450 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002991581 Q87GT6_nD2 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 51-285 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001406524 e4akkA2 002991582 Q87GT6_nD5 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 451-615 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002991583 Q87GT6_nD1 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 1-50,286-310 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002991584 Q87GT6_nD6 Q87GT6 Q87GT6_VIBPA VPA1229 histidine kinase 4308 616-755 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104746 e2v0nA2 002991585 Q87JP9_nD5 Q87JP9 Q87JP9_VIBPA VPA0199 3278 406-445,611-640 f a.7 3834 3834.1 3834.1.1 alpha bundles TcA alpha pore-forming domain TcA alpha pore-forming domain TcA alpha pore-forming domain 002773771 e6rw8A2 002991586 Q87JP9_nD2 Q87JP9 Q87JP9_VIBPA VPA0199 3278 11-40,301-325 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 000162589 e2d4uA1 002991587 Q87JP9_nD6 Q87JP9 Q87JP9_VIBPA VPA0199 3278 446-610 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002137468 e5nenB1 002991588 Q87JP9_nD1 Q87JP9 Q87JP9_VIBPA VPA0199 3278 41-165 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001147803 e4akkA1 002991589 Q87JP9_nD4 Q87JP9 Q87JP9_VIBPA VPA0199 3278 1-10,326-390 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002991590 Q87JP9_nD7 Q87JP9 Q87JP9_VIBPA VPA0199 3278 391-405,641-665 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 001172539 e3dyjA4 002991591 Q87JP9_nD3 Q87JP9 Q87JP9_VIBPA VPA0199 3278 171-300 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001406524 e4akkA2 002991592 Q87FL9_nD1 Q87FL9 Q87FL9_VIBPA VPA1660 4739 1-190 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001697376 e4yb9D1 002991593 Q87FL9_nD2 Q87FL9 Q87FL9_VIBPA VPA1660 4739 191-400 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002991594 Q87M29_nD1 Q87M29 Q87M29_VIBPA VP2429 radA DNA repair protein RadA 2429 1-40 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002507149 e6ok1B1 002991595 Q87M29_nD2 Q87M29 Q87M29_VIBPA VP2429 radA DNA repair protein RadA 2429 41-280 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002081110 e5lkmA2 002991596 Q87M29_nD3 Q87M29 Q87M29_VIBPA VP2429 radA DNA repair protein RadA 2429 281-390 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002081109 e5lkmA1 002991597 Q87M29_nD4 Q87M29 Q87M29_VIBPA VP2429 radA DNA repair protein RadA 2429 391-459 f a.17 3010 3010.1 3010.1.1 a/b three-layered sandwiches C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains 002070852 e5h45B2 002991598 Q87H80_nD1 Q87H80 Q87H80_VIBPA VPA1085 4164 21-320 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000154491 e4g1uA1 002991599 Q87QL4_nD4 Q87QL4 Q87QL4_VIBPA VP1135 Dockerin domain-containing protein 1135 601-640,676-775 f a.7 632 632.25 632.25.1 alpha bundles immunoglobulin/albumin-binding domain-like GBS CAMP factor N-terminal domain GBS CAMP factor N-terminal domain 002554036 e6jlcA2 002991600 Q87QL4_nD3 Q87QL4 Q87QL4_VIBPA VP1135 Dockerin domain-containing protein 1135 436-480,506-600 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001290861 e4oq1A1 002991601 Q87QL4_nD1 Q87QL4 Q87QL4_VIBPA VP1135 Dockerin domain-containing protein 1135 31-255 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001935252 e5m59E7 002991602 Q87QL4_nD2 Q87QL4 Q87QL4_VIBPA VP1135 Dockerin domain-containing protein 1135 261-335,426-435 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002100831 e5n2jB5 002991603 Q87GY0_nD1 Q87GY0 Q87GY0_VIBPA VPA1185 Phospho-2-dehydro-3-deoxyheptonate aldolase 4264 6-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002527681 e6u8jD1 002991604 Q87L81_nD1 Q87L81 G6PI_VIBPA VP2731 pgi Glucose-6-phosphate isomerase 2730 1-550 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001874375 e3pr3A2 002991605 Q87KH2_nD1 Q87KH2 Q87KH2_VIBPA VP3005 3004 6-45 f a.4 5 5.1 5.1.8 beta duplicates or obligate multimers beta-propeller-like beta-propeller putative conserved lipoprotein NT01CX_1156 001068681 e4l1nA1 002991606 Q87M22_nD1 Q87M22 DEOC_VIBPA VP2436 deoC Deoxyribose-phosphate aldolase 2436 1-258 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000093365 e1p1xB1 002991607 Q87RN1_nD2 Q87RN1 Q87RN1_VIBPA VP0746 Transglut_core2 domain-containing protein 746 166-260 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001840700 e5jj6B2 002991608 Q87RN1_nD1 Q87RN1 Q87RN1_VIBPA VP0746 Transglut_core2 domain-containing protein 746 6-145 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 001511127 e3u84A2 002991609 Q87FH0_nD2 Q87FH0 Q87FH0_VIBPA VPA1709 YgjV family protein 4788 71-160 f a.8 6155 6155.1 6155.1.1 alpha duplicates or obligate multimers TOG superfamily SWEET transporter SWEET transporter 002098022 e5uhqA1 002991610 Q87FH0_nD1 Q87FH0 Q87FH0_VIBPA VPA1709 YgjV family protein 4788 6-70 f a.21 3579 3579.1 3579.1.1 extended segments NADH-quinone oxidoreductase subunit J NADH-quinone oxidoreductase subunit J NADH-quinone oxidoreductase subunit J 000223890 e3rkoJ1 002991611 Q87L61_nD2 Q87L61 Q87L61_VIBPA VP2751 Penicillin-binding protein 1A 2750 316-430 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001291928 e4oonA2 002991612 Q87L61_nD1 Q87L61 Q87L61_VIBPA VP2751 Penicillin-binding protein 1A 2750 11-45,66-250 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001933509 e5hlbA3 002991613 Q87L61_nD4 Q87L61 Q87L61_VIBPA VP2751 Penicillin-binding protein 1A 2750 256-315,431-475,571-620,651-845 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 001933330 e5u2gA2 002991614 Q87L61_nD3 Q87L61 Q87L61_VIBPA VP2751 Penicillin-binding protein 1A 2750 476-570 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 001933332 e5u2gA4 002991615 Q87I21_nD1 Q87I21 Q87I21_VIBPA VPA0785 3864 6-135 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001683382 e2zhgA1 002991616 Q87PB8_nD1 Q87PB8 Q87PB8_VIBPA VP1599 zapC Cell division protein ZapC 1599 1-90 f a.1 1023 1023.1 1023.1.1 beta barrels Cell division protein ZapC N-terminal domain Cell division protein ZapC N-terminal domain Cell division protein ZapC N-terminal domain 001718701 e5fo3B1 002991617 Q87PB8_nD2 Q87PB8 Q87PB8_VIBPA VP1599 zapC Cell division protein ZapC 1599 91-165 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001718702 e5fo3B2 002991618 Q87TC8_nD2 Q87TC8 Q87TC8_VIBPA VP0142 Type II secretion system protein M 142 56-164 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002991619 Q87TC8_nD1 Q87TC8 Q87TC8_VIBPA VP0142 Type II secretion system protein M 142 1-50 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 002131732 e3jc9Oa2 002991620 Q87IW0_nD1 Q87IW0 Q87IW0_VIBPA VPA0496 3575 6-345 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 000147023 e3zuxA1 002991621 Q87L25_nD1 Q87L25 Y2791_VIBPA VP2791 UPF0270 protein VP2791 2790 1-70 f a.12 4137 4137.1 4137.1.1 a+b three layers YehU-like YehU-like YehU-like 000011050 e1y0nA1 002991622 Q87KB7_nD1 Q87KB7 Q87KB7_VIBPA VP3060 ilvE Branched-chain-amino-acid aminotransferase 3059 6-125 f a.11 4020 4020.1 4020.1.1 a+b two layers a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 000075295 e1i1mA2 002991623 Q87KB7_nD2 Q87KB7 Q87KB7_VIBPA VP3060 ilvE Branched-chain-amino-acid aminotransferase 3059 126-305 f a.11 4045 4045.1 4045.1.1 a+b two layers barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 000063742 e1i1mA1 002991624 Q87J11_nD1 Q87J11 Q87J11_VIBPA VPA0444 His-Xaa-Ser repeat protein HxsA 3523 116-175 f a.6 144 144.1 144.1.1 alpha arrays PGBD-like PGBD-like PGBD-like 001866862 e5anzA2 002991625 Q87N85_nD1 Q87N85 Q87N85_VIBPA VP1990 MFS transporter 1990 1-320 f a.7 593 593.1 593.1.1 alpha bundles GroEL equatorial domain-like GroEL equatorial domain-like GroEL equatorial domain-like 000057528 e1a6eA1 002991626 Q87QV9_nD1 Q87QV9 Q87QV9_VIBPA VP1040 ATP-grasp domain-containing protein 1040 6-315 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 001393752 e3ln6A1 002991627 Q87G62_nD3 Q87G62 Q87G62_VIBPA VPA1455 VWFA domain-containing protein 4534 321-510 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002464284 e6hftA1 002991628 Q87G62_nD2 Q87G62 Q87G62_VIBPA VPA1455 VWFA domain-containing protein 4534 81-295,591-618 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 000136176 e3ibsA1 002991629 Q87G62_nD1 Q87G62 Q87G62_VIBPA VPA1455 VWFA domain-containing protein 4534 1-75,301-320 f a.6 3252 3252.2 3252.2.1 alpha arrays SHQ1 C-terminal domain-like Anaphase-promoting complex subunit 5 N-terminal domain Anaphase-promoting complex subunit 5 N-terminal domain 002814207 e7qe7O2 002991630 Q87NX1_nD1 Q87NX1 Q87NX1_VIBPA VP1747 1747 11-470 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000185683 e4djiA1 002991631 Q87JP2_nD1 Q87JP2 Q87JP2_VIBPA VPA0206 DUF2256 domain-containing protein 3285 12-45 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 000008142 e1lv3A1 002991632 Q87IK2_nD1 Q87IK2 Q87IK2_VIBPA VPA0604 Phosphate-binding protein 3683 21-95,231-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002991633 Q87IK2_nD2 Q87IK2 Q87IK2_VIBPA VPA0604 Phosphate-binding protein 3683 96-230 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001522781 e1twyD1 002991634 Q87HW8_nD1 Q87HW8 Q87HW8_VIBPA VPA0838 Flavodoxin 3917 6-169 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011092 e2aj6A1 002991635 Q87M34_nD1 Q87M34 Q87M34_VIBPA VP2424 HTH araC/xylS-type domain-containing protein 2424 11-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001566347 e4qpjC1 002991636 Q87M34_nD2 Q87M34 Q87M34_VIBPA VP2424 HTH araC/xylS-type domain-containing protein 2424 151-200 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001602016 e3w6vA2 002991637 Q87M34_nD3 Q87M34 Q87M34_VIBPA VP2424 HTH araC/xylS-type domain-containing protein 2424 201-250 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002991638 Q87RI9_nD1 Q87RI9 Q87RI9_VIBPA VP0805 Protein QmcA 805 1-25 f a.19 904 904.1 904.1.1 few secondary structure elements B-box zinc-binding domain-like B-box zinc-binding domain B-box zinc-binding domain 002517714 e6qu1A1 002991639 Q87RI9_nD2 Q87RI9 Q87RI9_VIBPA VP0805 Protein QmcA 805 26-60 f a.3 3529 3529.1 3529.1.1 beta sandwiches Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain 001434207 e4v60I2 002991640 Q87RI9_nD4 Q87RI9 Q87RI9_VIBPA VP0805 Protein QmcA 805 181-270 f 002991641 Q87RI9_nD3 Q87RI9 Q87RI9_VIBPA VP0805 Protein QmcA 805 61-180 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000996940 e3bk6B1 002991642 Q87GR4_nD1 Q87GR4 Q87GR4_VIBPA VPA1251 Glutathione peroxidase 4330 16-180 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000116806 e2f8aB1 002991643 Q87IZ8_nD1 Q87IZ8 Q87IZ8_VIBPA VPA0457 Spore coat protein YutH 3536 11-90,123-160,216-295 f a.7 604 604.8 604.8.1 alpha bundles Spectrin repeat-like Smac/diablo Smac/diablo 000055177 e1g73B1 002991644 Q87NQ3_nD1 Q87NQ3 Q87NQ3_VIBPA VP1815 Ovule protein 1815 6-35 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 002732149 e7lt3H2 002991645 Q87FI0_nD3 Q87FI0 Q87FI0_VIBPA VPA1699 4778 371-405 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002512882 e6o0dA3 002991646 Q87FI0_nD2 Q87FI0 Q87FI0_VIBPA VPA1699 4778 211-370 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002991647 Q87FI0_nD1 Q87FI0 Q87FI0_VIBPA VPA1699 4778 1-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002565180 e6uv1A1 002991648 Q87SB4_nD1 Q87SB4 Q87SB4_VIBPA VP0510 Thiol:disulfide interchange protein 510 46-110 f a.11 243 243.4 243.4.1 a+b two layers Cystatin-like DsbC/DsbG N-terminal domain-like DsbC/DsbG N-terminal domain-like 001033396 e2iyjB1 002991649 Q87SB4_nD2 Q87SB4 Q87SB4_VIBPA VP0510 Thiol:disulfide interchange protein 510 111-260 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011322 e1eejA2 002991650 Q87LU9_nD1 Q87LU9 Q87LU9_VIBPA VP2509 lpxL Lipid A biosynthesis lauroyltransferase 2509 11-309 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 001890022 e5knkB1 002991651 Q87FU2_nD1 Q87FU2 Q87FU2_VIBPA VPA1586 ferredoxin--NADP(+) reductase 4665 6-105 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000103 e1fdrA1 002991652 Q87FU2_nD2 Q87FU2 Q87FU2_VIBPA VPA1586 ferredoxin--NADP(+) reductase 4665 106-254 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 000170145 e3fpkA2 002991653 Q87G35_nD1 Q87G35 Y5482_VIBPA VPA1482 Putative ABC transporter ATP-binding protein VPA1482 4561 1-565 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001140079 e4mkiA1 002991654 Q87K57_nD2 Q87K57 Q87K57_VIBPA VPA0041 3120 91-299 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002417223 e5ydwA1 002991655 Q87K57_nD1 Q87K57 Q87K57_VIBPA VPA0041 3120 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002991656 Q87MC3_nD1 Q87MC3 SYP_VIBPA VP2333 proS Proline--tRNA ligase 2333 1-240,386-465 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 002492513 e5znjA1 002991657 Q87MC3_nD2 Q87MC3 SYP_VIBPA VP2333 proS Proline--tRNA ligase 2333 251-385 f a.14 299 299.1 299.1.1 a+b complex topology YbaK/ProRS associated domain YbaK/ProRS associated domain YbaK/ProRS associated domain 002032357 e5ucmB2 002991658 Q87MC3_nD3 Q87MC3 SYP_VIBPA VP2333 proS Proline--tRNA ligase 2333 466-570 f a.17 7502 7502.1 7502.1.1 a/b three-layered sandwiches Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS 002032356 e5ucmB1 002991659 Q87GP8_nD1 Q87GP8 Q87GP8_VIBPA VPA1267 Transposase 4346 6-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000377524 e3kkcB1 002991660 Q87GP8_nD2 Q87GP8 Q87GP8_VIBPA VPA1267 Transposase 4346 101-140 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002068819 e4owiB1 002991661 Q87S30_nD1 Q87S30 Q87S30_VIBPA VP0594 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 594 1-235 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 000172998 e3ilkA1 002991662 Q87Q25_nD1 Q87Q25 Q87Q25_VIBPA VP1325 Lipoprotein 1325 36-130 f a.11 243 243.5 243.5.1 a+b two layers Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region 000386808 e3loyB3 002991663 Q87K96_nD1 Q87K96 Q87K96_VIBPA VPA0002 Transcriptional regulator 3081 6-140 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001181923 e2if4A2 002991664 Q87RM4_nD1 Q87RM4 Q87RM4_VIBPA VP0754 754 6-30 f a.8 6066 6066.1 6066.1.1 alpha duplicates or obligate multimers Transmembrane domain of CD3 zeta chain Transmembrane domain of CD3 zeta chain Transmembrane domain of CD3 zeta chain 002527051 e6jxra1 002991665 Q87MP3_nD1 Q87MP3 Q87MP3_VIBPA VP2188 Dihydrofolate synthase/folylpolyglutamate synthase 2188 11-285 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000156709 e1w78A1 002991666 Q87MP3_nD2 Q87MP3 Q87MP3_VIBPA VP2188 Dihydrofolate synthase/folylpolyglutamate synthase 2188 286-415 f a.17 7570 7570.1 7570.1.1 a/b three-layered sandwiches MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 000156710 e1w78A2 002991667 Q87Q56_nD1 Q87Q56 IHFA_VIBPA VP1294 ihfA Integration host factor subunit alpha 1294 1-90 f a.6 101 101.17 101.17.1 alpha arrays HTH IHF-like DNA-binding proteins IHF-like DNA-binding proteins 002598076 e6o8qG1 002991668 Q87KL9_nD1 Q87KL9 Q87KL9_VIBPA VP2958 DUF1145 domain-containing protein 2957 1-85 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002833342 e7n0eA1 002991669 Q87LD0_nD4 Q87LD0 RAPA_VIBPA VP2682 rapA RNA polymerase-associated protein RapA 2681 431-680 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001840991 e3mwyW4 002991670 Q87LD0_nD3 Q87LD0 RAPA_VIBPA VP2682 rapA RNA polymerase-associated protein RapA 2681 121-430 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002140844 e6bogA5 002991671 Q87LD0_nD5 Q87LD0 RAPA_VIBPA VP2682 rapA RNA polymerase-associated protein RapA 2681 701-969 f a.14 3509 3509.1 3509.1.1 a+b complex topology RapA C-terminal domain RapA C-terminal domain RapA C-terminal domain 002140842 e6bogA3 002991672 Q87LD0_nD2 Q87LD0 RAPA_VIBPA VP2682 rapA RNA polymerase-associated protein RapA 2681 56-120 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002140841 e6bogA2 002991673 Q87LD0_nD1 Q87LD0 RAPA_VIBPA VP2682 rapA RNA polymerase-associated protein RapA 2681 1-55 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002140843 e6bogA4 002991674 Q87MM1_nD1 Q87MM1 Q87MM1_VIBPA VP2210 RNA polymerase sigma factor 2210 16-105 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 001922202 e5tmcF2 002991675 Q87MM1_nD2 Q87MM1 Q87MM1_VIBPA VP2210 RNA polymerase sigma factor 2210 106-185 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002589357 e5vt0L3 002991676 Q87TE1_nD1 Q87TE1 PCKA_VIBPA VP0129 pckA Phosphoenolpyruvate carboxykinase (ATP) 129 11-225 f a.17 2004 2004.11 2004.11.1 a/b three-layered sandwiches P-loop domains-like PEP carboxykinase N-terminal domain PEP carboxykinase N-terminal domain 000118111 e1os1A2 002991677 Q87TE1_nD2 Q87TE1 PCKA_VIBPA VP0129 pckA Phosphoenolpyruvate carboxykinase (ATP) 129 226-540 f a.17 2004 2004.1 2004.1.2 a/b three-layered sandwiches P-loop domains-like P-loop domains-related PEP carboxykinase catalytic C-terminal domain 000102958 e1os1A1 002991678 Q87TJ1_nD1 Q87TJ1 USPB_VIBPA VP0078 uspB Universal stress protein B homolog 78 6-105 f a.10 606 606.1 606.1.1 alpha complex topology Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain 001558416 e3nviA2 002991679 Q87KP5_nD2 Q87KP5 MURB_VIBPA VP2932 murB UDP-N-acetylenolpyruvoylglucosamine reductase 2931 206-340 f a.14 313 313.1 313.1.1 a+b complex topology Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 000136775 e3i99A2 002991680 Q87KP5_nD1 Q87KP5 MURB_VIBPA VP2932 murB UDP-N-acetylenolpyruvoylglucosamine reductase 2931 1-200 f a.14 217 217.1 217.1.1 a+b complex topology FAD-binding domain-like FAD-binding domain FAD-binding domain 000136774 e3i99A1 002991681 Q87MB4_nD4 Q87MB4 DPO4_VIBPA VP2342 dinB DNA polymerase IV 2342 246-354 f a.11 302 302.1 302.1.1 a+b two layers Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain 000063410 e1unnD1 002991682 Q87MB4_nD3 Q87MB4 DPO4_VIBPA VP2342 dinB DNA polymerase IV 2342 181-245 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001257131 e4irkA7 002991683 Q87MB4_nD1 Q87MB4 DPO4_VIBPA VP2342 dinB DNA polymerase IV 2342 26-80 f a.12 850 850.1 850.1.1 a+b three layers Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like 002799733 e7nv0A3 002991684 Q87MB4_nD2 Q87MB4 DPO4_VIBPA VP2342 dinB DNA polymerase IV 2342 6-25,81-180 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 000363452 e3gqcB3 002991685 Q87IK6_nD1 Q87IK6 Q87IK6_VIBPA VPA0600 3679 58-605 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 002791311 e7allAAA1 002991686 Q87IK6_nD2 Q87IK6 Q87IK6_VIBPA VPA0600 3679 611-789 f a.3 10 10.1 10.1.1 beta sandwiches jelly-roll Concanavalin A-like Concanavalin A-like lectins/glucanases 001867076 e5fraA1 002991687 Q87N38_nD2 Q87N38 Q87N38_VIBPA VP2037 2037 166-315 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001710397 e3breB2 002991688 Q87N38_nD1 Q87N38 Q87N38_VIBPA VP2037 2037 21-165 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 000164917 e2ho9A1 002991689 Q87G95_nD1 Q87G95 Q87G95_VIBPA VPA1422 4501 6-90 f a.11 322 322.1 322.1.1 a+b two layers HPr-like HPr-like HPr-like 001919081 e5t1nA1 002991690 Q87G95_nD2 Q87G95 Q87G95_VIBPA VPA1422 4501 111-255 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000145838 e3urrA1 002991691 Q87NT7_nD2 Q87NT7 Q87NT7_VIBPA VP1781 1781 126-175,196-460 f a.11 321 321.1 321.1.1 a+b two layers Glutamine synthetase-like Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase 002559013 e6pewH1 002991692 Q87NT7_nD1 Q87NT7 Q87NT7_VIBPA VP1781 1781 16-125 f a.1 239 239.4 239.4.1 beta barrels Ribosomal protein L25-like Glutamine synthetase, N-terminal domain Glutamine synthetase, N-terminal domain 002391550 e5zlpJ1 002991693 Q87NM5_nD1 Q87NM5 Q87NM5_VIBPA VP1843 Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family 1843 1-90 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 001712440 e5cegB1 002991694 Q87N04_nD1 Q87N04 NHAB_VIBPA VP2072 nhaB Na(+)/H(+) antiporter NhaB 2072 1-515 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002991695 Q87QX5_nD2 Q87QX5 GLGA_VIBPA VP1024 glgA Glycogen synthase 1024 256-470 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001718209 e2qzsA1 002991696 Q87QX5_nD1 Q87QX5 GLGA_VIBPA VP1024 glgA Glycogen synthase 1024 6-255,471-485 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002390088 e6gngB1 002991697 Q87HY8_nD1 Q87HY8 Q87HY8_VIBPA VPA0818 EAL domain-containing protein 3897 11-265 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002540613 e6ih7A1 002991698 Q79YY7_nD2 Q79YY7 Q79YY7_VIBPA VP0780 Flagellar basal body protein 780 71-205 f a.5 4167 4167.1 4167.1.1 beta complex topology Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain 002516325 e6jf2B1 002991699 Q79YY7_nD1 Q79YY7 Q79YY7_VIBPA VP0780 Flagellar basal body protein 780 1-70,206-245 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002991700 Q87IX7_nD1 Q87IX7 Q87IX7_VIBPA VPA0479 Copper-binding protein 3558 71-193 f a.3 3156 3156.1 3156.1.1 beta sandwiches Cupredoxin-like Cupredoxin-related Cupredoxin-related 000001782 e1qhqA1 002991701 Q87IL0_nD5 Q87IL0 Q87IL0_VIBPA VPA0596 3675 241-270,481-515 f a.7 3755 3755.4 3755.4.1 alpha bundles YscO-like Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 002537293 e6pyrB1 002991702 Q87IL0_nD2 Q87IL0 Q87IL0_VIBPA VPA0596 3675 146-170 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002570825 e6v9zB1 002991703 Q87IL0_nD1 Q87IL0 Q87IL0_VIBPA VPA0596 3675 11-135 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001177497 e3rtyE5 002991704 Q87IL0_nD4 Q87IL0 Q87IL0_VIBPA VPA0596 3675 271-480 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002991705 Q87IL0_nD3 Q87IL0 Q87IL0_VIBPA VPA0596 3675 171-240 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 000997502 e4i44A1 002991706 Q87JN4_nD3 Q87JN4 Q87JN4_VIBPA VPA0214 3293 136-228 f a.1 4 4.31 4.31.1 beta barrels SH3 Central WYL domain of RspWYL1 Central WYL domain of RspWYL1 002504482 e6oawB2 002991707 Q87JN4_nD1 Q87JN4 Q87JN4_VIBPA VPA0214 3293 1-60 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002702298 e7cv0A1 002991708 Q87JN4_nD2 Q87JN4 Q87JN4_VIBPA VPA0214 3293 66-135 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001389897 e4v0pA1 002991709 Q87RX7_nD1 Q87RX7 Q87RX7_VIBPA VP0649 DUF3103 family protein 649 51-195 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 000004683 e2f6mB1 002991710 Q87RX7_nD2 Q87RX7 Q87RX7_VIBPA VP0649 DUF3103 family protein 649 196-419 f a.3 11 11.2 11.2.1 beta sandwiches Immunoglobulin-like beta-sandwich C2 domain C2 domain 002697145 e6kxuC2 002991711 Q87SW8_nD1 Q87SW8 Q87SW8_VIBPA VP0304 YtfJ family protein 304 21-183 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002392103 e6gc1C1 002991712 Q87PL9_nD2 Q87PL9 Q87PL9_VIBPA VP1483 Diguanylate cyclase 1483 156-315 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002991713 Q87PL9_nD1 Q87PL9 Q87PL9_VIBPA VP1483 Diguanylate cyclase 1483 1-155 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000401536 e3k3cA1 002991714 Q87KY6_nD1 Q87KY6 EPMA_VIBPA VP2838 epmA Elongation factor P--(R)-beta-lysine ligase 2837 6-323 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000398298 e3a5zC1 002991715 Q87P78_nD2 Q87P78 Q87P78_VIBPA VP1640 HAD family hydrolase 1640 86-190 f a.11 3012 3012.1 3012.1.1 a+b two layers Cof C2 cap domain Cof C2 cap domain Cof C2 cap domain 002076128 e1rkqB1 002991716 Q87P78_nD1 Q87P78 Q87P78_VIBPA VP1640 HAD family hydrolase 1640 1-85,191-265 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000145103 e3r4cA1 002991717 Q87MN1_nD1 Q87MN1 Q87MN1_VIBPA VP2200 PTS sugar transporter subunit IIC 2200 6-40 f a.21 6106 6106.1 6106.1.1 extended segments Photosystem II protein Y, psbY Photosystem II protein Y, psbY Photosystem II protein Y, psbY 002798790 e7n8oR1 002991718 Q87NT4_nD1 Q87NT4 Q87NT4_VIBPA VP1784 DUF3291 domain-containing protein 1784 1-90 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 002701285 e7bioA1 002991719 Q87FX9_nD1 Q87FX9 Q87FX9_VIBPA VPA1541 Flagellar motor switch protein FliN 4620 41-120 f a.1 1 1.1 1.1.10 beta barrels cradle loop barrel RIFT-related Surface presentation of antigens (SPOA) 000991007 e3uepB1 002991720 Q87MY6_nD2 Q87MY6 Q87MY6_VIBPA VP2090 2090 6-25,66-300 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002772273 e7mbzA1 002991721 Q87MY6_nD1 Q87MY6 Q87MY6_VIBPA VP2090 2090 26-65 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 002736827 e6z0cC1 002991722 Q87MM9_nD1 Q87MM9 AROC_VIBPA VP2202 aroC Chorismate synthase 2202 1-360 f a.11 875 875.1 875.1.1 a+b two layers Chorismate synthase, AroC Chorismate synthase, AroC Chorismate synthase, AroC 002770551 e7rcaA1 002991723 Q87NQ5_nD1 Q87NQ5 Q87NQ5_VIBPA VP1813 Conserved domain protein 1813 21-129 f a.7 603 603.1 603.1.1 alpha bundles STAT-like t-snare proteins t-snare proteins 001125907 e4j2cC1 002991724 Q87RR4_nD2 Q87RR4 Q87RR4_VIBPA VP0713 OmpR/PhoB-type domain-containing protein 713 171-310 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 002068772 e3ly7A3 002991725 Q87RR4_nD1 Q87RR4 Q87RR4_VIBPA VP0713 OmpR/PhoB-type domain-containing protein 713 6-120,141-165 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002067753 e5ju7A1 002991726 Q87RR4_nD3 Q87RR4 Q87RR4_VIBPA VP0713 OmpR/PhoB-type domain-containing protein 713 316-495 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002439594 e6bqsA1 002991727 Q87FU1_nD1 Q87FU1 Q87FU1_VIBPA VPA1587 Acyl-CoA thioesterase 4666 1-150 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 002162065 e6fdgA1 002991728 Q87N22_nD1 Q87N22 Q87N22_VIBPA VP2054 3-oxoacyl-[acyl-carrier-protein] reductase 2054 1-244 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000419166 e3rshB1 002991729 Q79YY5_nD2 Q79YY5 Q79YY5_VIBPA VP0786 786 191-280 f a.3 3943 3943.1 3943.1.1 beta sandwiches Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains 002409295 e5zj0A2 002991730 Q79YY5_nD1 Q79YY5 Q79YY5_VIBPA VP0786 786 1-190,281-395 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002991731 Q87P61_nD1 Q87P61 Q87P61_VIBPA VP1657 1657 61-130 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002574243 e6kosA1 002991732 Q87P61_nD2 Q87P61 Q87P61_VIBPA VP1657 1657 131-165 f a.7 3758 3758.1 3758.1.1 alpha bundles Bacterial hemolysins-like Bacterial hemolysins Bacterial hemolysins 002737093 e6zzhAAA1 002991733 Q87P61_nD5 Q87P61 Q87P61_VIBPA VP1657 1657 371-395 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 000136279 e3fx7A1 002991734 Q87P61_nD3 Q87P61 Q87P61_VIBPA VP1657 1657 166-265 f a.7 604 604.12 604.12.1 alpha bundles Spectrin repeat-like MIT domain MIT domain 002067863 e5lb7B1 002991735 Q87P61_nD4 Q87P61 Q87P61_VIBPA VP1657 1657 266-295 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000223874 e3n71A2 002991736 Q87FX6_nD1 Q87FX6 Q87FX6_VIBPA VPA1544 Flagellar biosynthetic protein FliR 4623 11-255 f a.7 5045 5045.1 5045.1.1 alpha bundles F1F0 ATP synthase subunit A F1F0 ATP synthase subunit A F1F0 ATP synthase subunit A 002450159 e6n2ya1 002991737 Q87L26_nD1 Q87L26 Q87L26_VIBPA VP2790 AB hydrolase-1 domain-containing protein 2789 6-330 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001107116 e4i4cA1 002991738 Q87HW5_nD1 Q87HW5 Q87HW5_VIBPA VPA0841 3920 1-220 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000175473 e3l5kA1 002991739 Q87N92_nD1 Q87N92 Q87N92_VIBPA VP1983 1983 1-120 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104696 e1ys7A2 002991740 Q87N92_nD2 Q87N92 Q87N92_VIBPA VP1983 1983 121-225 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002745 e1kgsA1 002991741 Q87PY6_nD3 Q87PY6 Q87PY6_VIBPA VP1364 1364 181-315 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002574243 e6kosA1 002991742 Q87PY6_nD1 Q87PY6 Q87PY6_VIBPA VP1364 1364 6-30 f a.21 5011 5011.1 5011.1.1 extended segments Bacterial ba3 type cytochrome c oxidase subunit IIa Bacterial ba3 type cytochrome c oxidase subunit IIa Bacterial ba3 type cytochrome c oxidase subunit IIa 002777539 e7degF1 002991743 Q87PY6_nD2 Q87PY6 Q87PY6_VIBPA VP1364 1364 36-180 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002702525 e7d06K1 002991744 Q87QH3_nD4 Q87QH3 Q87QH3_VIBPA VP1176 1176 26-40,271-340 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001103156 e3ne5C2 002991745 Q87QH3_nD3 Q87QH3 Q87QH3_VIBPA VP1176 1176 41-55,186-270 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001016555 e4dntC2 002991746 Q87QH3_nD1 Q87QH3 Q87QH3_VIBPA VP1176 1176 91-150 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001070258 e4l8jA1 002991747 Q87QH3_nD2 Q87QH3 Q87QH3_VIBPA VP1176 1176 56-90,151-185 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002991748 Q87HG7_nD1 Q87HG7 Q87HG7_VIBPA VPA0998 Nitrite reductase 4077 1-40 f a.21 3473 3473.1 3473.1.1 extended segments Twin-arginine transport (Tat) system component TatA Twin-arginine transport (Tat) system component TatA Twin-arginine transport (Tat) system component TatA 002701127 e7b7oA1 002991749 Q87HG7_nD2 Q87HG7 Q87HG7_VIBPA VPA0998 Nitrite reductase 4077 41-80 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 002754033 e6yrlD1 002991750 Q87KJ4_nD1 Q87KJ4 DAPF_VIBPA VP2983 dapF Diaminopimelate epimerase 2982 1-130 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 001273564 e3ejxD3 002991751 Q87KJ4_nD2 Q87KJ4 DAPF_VIBPA VP2983 dapF Diaminopimelate epimerase 2982 131-275 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 000007492 e2gkeA2 002991752 Q87KI7_nD3 Q87KI7 Q87KI7_VIBPA VP2990 2989 161-225,371-400 f a.7 601 601.13 601.13.1 alpha bundles Four-helical up-and-down bundle Flagellar export chaperone FliS Flagellar export chaperone FliS 002141078 e5mawE1 002991753 Q87KI7_nD4 Q87KI7 Q87KI7_VIBPA VP2990 2989 226-250,296-370 f a.7 633 633.4 633.4.1 alpha bundles Bromodomain-like Plant invertase/pectin methylesterase inhibitor Plant invertase/pectin methylesterase inhibitor 000003643 e1x91A1 002991754 Q87KI7_nD1 Q87KI7 Q87KI7_VIBPA VP2990 2989 66-90 f a.21 3465 3465.1 3465.1.1 extended segments Subunit PsaX of photosystem I reaction centre Subunit PsaX of photosystem I reaction centre Subunit PsaX of photosystem I reaction centre 002580904 e6tclX1 002991755 Q87KI7_nD2 Q87KI7 Q87KI7_VIBPA VP2990 2989 91-155 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000150886 e4fi5A1 002991756 Q87GP9_nD4 Q87GP9 Q87GP9_VIBPA VPA1266 4345 301-490 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001030937 e1w36D4 002991757 Q87GP9_nD3 Q87GP9 Q87GP9_VIBPA VPA1266 4345 166-300 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001167050 e3gp8A13 002991758 Q87GP9_nD1 Q87GP9 Q87GP9_VIBPA VPA1266 4345 6-95 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000154901 e4damA1 002991759 Q87GP9_nD6 Q87GP9 Q87GP9_VIBPA VPA1266 4345 571-645 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002726888 e7bilB2 002991760 Q87GP9_nD5 Q87GP9 Q87GP9_VIBPA VPA1266 4345 491-570,646-670 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001167051 e3gp8A14 002991761 Q87GP9_nD2 Q87GP9 Q87GP9_VIBPA VPA1266 4345 96-165 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001155658 e2h5xA4 002991762 Q87KI6_nD2 Q87KI6 Q87KI6_VIBPA VP2991 2990 231-390 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002043556 e5ulmB1 002991763 Q87KI6_nD1 Q87KI6 Q87KI6_VIBPA VP2991 2990 26-230 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001713369 e4zlhB1 002991764 Q87GW0_nD1 Q87GW0 Q87GW0_VIBPA VPA1205 4284 1-245 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001124865 e4n5mB1 002991765 Q87K67_nD1 Q87K67 Q87K67_VIBPA VPA0031 gltS Sodium/glutamate symporter 3110 6-410 f a.10 3236 3236.2 3236.2.1 alpha complex topology Cation-proton antiporter Sodium-dependent citrate symporter Sodium-dependent citrate symporter 001759948 e5a1sD1 002991766 Q87SM3_nD1 Q87SM3 Q87SM3_VIBPA VP0399 399 1-54 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 002168161 e6amaY1 002991767 Q87H12_nD1 Q87H12 Q87H12_VIBPA VPA1153 4232 11-270 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002991768 Q87RE9_nD2 Q87RE9 Q87RE9_VIBPA VP0848 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 848 166-400 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 000007518 e1sczA1 002991769 Q87RE9_nD1 Q87RE9 Q87RE9_VIBPA VP0848 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 848 1-80 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001153575 e3va7A24 002991770 Q87NV0_nD2 Q87NV0 Q87NV0_VIBPA VP1768 EAL domain-containing protein 1768 1-15,241-495 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 001289504 e4q6jB1 002991771 Q87NV0_nD1 Q87NV0 Q87NV0_VIBPA VP1768 EAL domain-containing protein 1768 16-240 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000006843 e2hjeA1 002991772 Q87T45_nD2 Q87T45 Q87T45_VIBPA VP0225 225 186-390 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002473003 e6nc9A2 002991773 Q87T45_nD1 Q87T45 Q87T45_VIBPA VP0225 225 1-180 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002072330 e5c6oA1 002991774 Q87MR4_nD1 Q87MR4 Q87MR4_VIBPA VP2167 ABM domain-containing protein 2167 1-94 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 001562176 e4zosA1 002991775 Q87N88_nD1 Q87N88 Q87N88_VIBPA VP1987 Isochorismatase domain-containing protein 1987 1-180 f a.17 7561 7561.1 7561.1.1 a/b three-layered sandwiches Isochorismatase-like hydrolases Isochorismatase-like hydrolases Isochorismatase-like hydrolases 000109992 e1yacB1 002991776 Q87TE5_nD1 Q87TE5 Y125_VIBPA VP0125 UPF0761 membrane protein VP0125 125 141-170 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002082799 e5khnB2 002991777 Q87TE5_nD2 Q87TE5 Y125_VIBPA VP0125 UPF0761 membrane protein VP0125 125 6-60,111-135,186-285 f a.9 5038 5038.1 5038.1.1 alpha superhelices Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 000183201 e2ybbL1 002991778 Q87QH9_nD1 Q87QH9 Q87QH9_VIBPA VP1170 1170 1-145,176-315 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002772273 e7mbzA1 002991779 Q87PL8_nD1 Q87PL8 Q87PL8_VIBPA VP1484 Topoisomerase II 1484 6-110 f a.7 4009 4009.1 4009.1.1 alpha bundles alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins alpha-helical domain in AF1104-like proteins 000396160 e3addA1 002991780 Q87IT9_nD3 Q87IT9 Q87IT9_VIBPA VPA0517 Peptidase M23 3596 261-425 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 002774289 e6ue4B1 002991781 Q87IT9_nD2 Q87IT9 Q87IT9_VIBPA VPA0517 Peptidase M23 3596 161-260 f a.11 3953 3953.1 3953.1.1 a+b two layers Csd3 N-terminal domain Csd3 N-terminal domain Csd3 N-terminal domain 001606365 e3sluB2 002991782 Q87IT9_nD1 Q87IT9 Q87IT9_VIBPA VPA0517 Peptidase M23 3596 71-160 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002740077 e6u2aA2 002991783 Q87KQ8_nD1 Q87KQ8 Q87KQ8_VIBPA VP2918 Conserved domain protein 2917 41-178 f a.14 261 261.1 261.1.1 a+b complex topology Hect, E3 ligase catalytic domain Hect, E3 ligase catalytic domain Hect, E3 ligase catalytic domain 001165223 e3pt3B2 002991784 Q87MG5_nD2 Q87MG5 Q87MG5_VIBPA VP2290 2290 421-565 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 002827316 e7sunB2 002991785 Q87MG5_nD1 Q87MG5 Q87MG5_VIBPA VP2290 2290 16-420 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002771391 e7lhvA1 002991786 Q87RV5_nD1 Q87RV5 Q87RV5_VIBPA VP0671 671 6-185,401-490 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001394000 e3mruA2 002991787 Q87RV5_nD2 Q87RV5 Q87RV5_VIBPA VP0671 671 186-400 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 001393999 e3mruA1 002991788 Q87T63_nD1 Q87T63 Q87T63_VIBPA VP0207 207 1-253 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001930830 e5g4kA1 002991789 Q87J91_nD1 Q87J91 Q87J91_VIBPA VPA0362 3441 21-120,146-495 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 001841134 e5azpB1 002991790 Q87QM6_nD1 Q87QM6 Q87QM6_VIBPA VP1123 1123 16-135 f a.11 268 268.1 268.1.1 a+b two layers Sterol carrier protein-like Sterol carrier protein, SCP-related Sterol carrier protein, SCP-related 002495217 e5z9oA1 002991791 Q87QM6_nD2 Q87QM6 Q87QM6_VIBPA VP1123 1123 136-418 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000135236 e3hemA1 002991792 Q87H44_nD2 Q87H44 Q87H44_VIBPA VPA1121 4200 116-235 f a.5 4052 4052.1 4052.1.1 beta complex topology Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like 000405131 e3pfdB1 002991793 Q87H44_nD1 Q87H44 Q87H44_VIBPA VPA1121 4200 6-115 f a.6 4033 4033.1 4033.1.1 alpha arrays Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like 001140344 e4l1fA2 002991794 Q87H44_nD3 Q87H44 Q87H44_VIBPA VPA1121 4200 236-384 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 000054216 e1bucB3 002991795 Q87GF4_nD4 Q87GF4 Q87GF4_VIBPA VPA1362 4441 296-330 f a.7 3713 3713.1 3713.1.1 alpha bundles Small terminase central domain Small terminase central domain Small terminase central domain 000184367 e3txsA1 002991796 Q87GF4_nD3 Q87GF4 Q87GF4_VIBPA VPA1362 4441 236-260 f a.17 7519 7519.1 7519.1.1 a/b three-layered sandwiches ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit 002556142 e6tdyG1 002991797 Q87GF4_nD1 Q87GF4 Q87GF4_VIBPA VPA1362 4441 91-115 f a.6 1014 1014.1 1014.1.1 alpha arrays AopB AopB AopB 001697351 e3wxxF1 002991798 Q87GF4_nD2 Q87GF4 Q87GF4_VIBPA VPA1362 4441 81-90,116-200 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 000184859 e2p22A1 002991799 Q87IC8_nD1 Q87IC8 Q87IC8_VIBPA VPA0678 OmpR/PhoB-type domain-containing protein 3757 26-125 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001821054 e4uhtA1 002991800 Q87RN6_nD1 Q87RN6 LOLB_VIBPA VP0741 lolB Outer-membrane lipoprotein LolB 741 26-203 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 001146605 e3wjtA1 002991801 Q87L68_nD1 Q87L68 AROB_VIBPA VP2744 aroB 3-dehydroquinate synthase 2743 1-175 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 001094846 e3zokA1 002991802 Q87L68_nD2 Q87L68 AROB_VIBPA VP2744 aroB 3-dehydroquinate synthase 2743 176-365 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 000140530 e3okfA2 002991803 Q87M88_nD3 Q87M88 Q87M88_VIBPA VP2370 DUF2850 domain-containing protein 2370 61-145 f a.1 9 9.7 9.7.1 beta barrels Lipocalins/Streptavidin Metalloprotease inhibitor Metalloprotease inhibitor 002561195 e6iy4I1 002991804 Q87M88_nD2 Q87M88 Q87M88_VIBPA VP2370 DUF2850 domain-containing protein 2370 26-55 f a.3 3223 3223.1 3223.1.1 beta sandwiches Amiloride-sensitive cation channel 2 Amiloride-sensitive cation channel 2 Amiloride-sensitive cation channel 2 002593142 e6vtkA1 002991805 Q87M88_nD1 Q87M88 Q87M88_VIBPA VP2370 DUF2850 domain-containing protein 2370 1-25 f a.11 887 887.1 887.1.1 a+b two layers Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e 002755731 e7o7yBF1 002991806 Q87LS8_nD1 Q87LS8 RS16_VIBPA VP2533 rpsP 30S ribosomal protein S16 2533 1-80 f a.11 837 837.1 837.1.1 a+b two layers Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16 002575939 e6v3bp1 002991807 Q87K16_nD1 Q87K16 Q87K16_VIBPA VPA0082 3161 1-305 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000138325 e3lhxA1 002991808 Q87SP7_nD1 Q87SP7 Q87SP7_VIBPA VP0375 375 31-210 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001300193 e4qb7A2 002991809 Q87SP7_nD2 Q87SP7 Q87SP7_VIBPA VP0375 375 211-349 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002138851 e6az5A1 002991810 Q87HZ9_nD1 Q87HZ9 Q87HZ9_VIBPA VPA0807 3886 66-105,166-200 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002991811 Q87HZ9_nD2 Q87HZ9 Q87HZ9_VIBPA VPA0807 3886 106-165 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001070258 e4l8jA1 002991812 Q87HZ9_nD4 Q87HZ9 Q87HZ9_VIBPA VPA0807 3886 41-50,286-355 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001103156 e3ne5C2 002991813 Q87HZ9_nD3 Q87HZ9 Q87HZ9_VIBPA VPA0807 3886 51-65,201-285 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002067198 e5ng5E1 002991814 Q87QA8_nD2 Q87QA8 Q87QA8_VIBPA VP1241 TfoX/Sxy family DNA transformation protein 1242 116-190 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001837426 e3mabA1 002991815 Q87QA8_nD1 Q87QA8 Q87QA8_VIBPA VP1241 TfoX/Sxy family DNA transformation protein 1242 6-105 f a.11 241 241.7 241.7.1 a+b two layers Type III secretory system chaperone-like YgaC/TfoX-N like YgaC/TfoX-N like 000006639 e2od0A1 002991816 Q87QC7_nD1 Q87QC7 Q87QC7_VIBPA VP1222 Cytochrome c-type protein 1222 36-180 f a.19 139 139.1 139.1.1 few secondary structure elements Multiheme cytochromes Cytochrome c3-like Cytochrome c3-like 001644188 e2vr0F1 002991817 Q87KU0_nD1 Q87KU0 Q87KU0_VIBPA VP2886 2885 6-185 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001697376 e4yb9D1 002991818 Q87KU0_nD2 Q87KU0 Q87KU0_VIBPA VP2886 2885 186-385 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004912 e1pw4A2 002991819 Q87HE6_nD1 Q87HE6 Q87HE6_VIBPA VPA1019 Histidine phosphatase family protein 4098 1-170 f a.17 7525 7525.1 7525.1.1 a/b three-layered sandwiches Phosphoglycerate mutase-like Phosphoglycerate mutase-like Phosphoglycerate mutase-like 000108906 e1xq9A1 002991820 Q87IE9_nD1 Q87IE9 Q87IE9_VIBPA VPA0657 3736 21-160 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050983 e3tefA1 002991821 Q87IE9_nD2 Q87IE9 Q87IE9_VIBPA VPA0657 3736 161-300 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050984 e3tefA2 002991822 Q87NY1_nD1 Q87NY1 Q87NY1_VIBPA VP1737 VOC domain-containing protein 1737 1-120 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001395094 e2rbbA3 002991823 Q87QA5_nD3 Q87QA5 Q87QA5_VIBPA VP1245 histidine kinase 1245 321-640 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223602 e3d36B7 002991824 Q87QA5_nD2 Q87QA5 Q87QA5_VIBPA VP1245 histidine kinase 1245 181-320 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002061591 e5x6eF1 002991825 Q87QA5_nD1 Q87QA5 Q87QA5_VIBPA VP1245 histidine kinase 1245 1-175 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001710397 e3breB2 002991826 Q87Q47_nD1 Q87Q47 Q87Q47_VIBPA VP1303 NAD(P)-bd_dom domain-containing protein 1303 6-230 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009104 e2bkaA1 002991827 Q87FJ6_nD1 Q87FJ6 Q87FJ6_VIBPA VPA1683 Alkyl hydroperoxide reductase C 4762 1-170 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001118632 e4mabE1 002991828 Q87KE4_nD1 Q87KE4 AROE_VIBPA VP3033 aroE Shikimate dehydrogenase (NADP(+)) 3032 6-105 f a.17 2007 2007.1 2007.1.6 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Aminoacid dehydrogenase-like, N-terminal domain 000398070 e3o8qB2 002991829 Q87KE4_nD2 Q87KE4 AROE_VIBPA VP3033 aroE Shikimate dehydrogenase (NADP(+)) 3032 106-275 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000398067 e3o8qA1 002991830 Q87QM4_nD1 Q87QM4 Q87QM4_VIBPA VP1125 Chalcone_isomerase domain-containing protein 1125 21-185 f a.11 813 813.1 813.1.1 a+b two layers Chalcone isomerase Chalcone isomerase Chalcone isomerase 002325347 e5wkrA1 002991831 Q87HC1_nD1 Q87HC1 Q87HC1_VIBPA VPA1044 non-specific serine/threonine protein kinase 4123 81-360 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000334525 e2pywB1 002991832 Q87HC1_nD2 Q87HC1 Q87HC1_VIBPA VPA1044 non-specific serine/threonine protein kinase 4123 366-405 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001414922 e4r8gE2 002991833 Q87HC1_nD5 Q87HC1 Q87HC1_VIBPA VPA1044 non-specific serine/threonine protein kinase 4123 616-714 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002818710 e7rdrC2 002991834 Q87HC1_nD3 Q87HC1 Q87HC1_VIBPA VPA1044 non-specific serine/threonine protein kinase 4123 406-545 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004623 e2d2sA1 002991835 Q87HC1_nD4 Q87HC1 Q87HC1_VIBPA VPA1044 non-specific serine/threonine protein kinase 4123 546-615 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004623 e2d2sA1 002991836 Q87RC6_nD3 Q87RC6 Q87RC6_VIBPA VP0871 rnd Ribonuclease D 871 311-388 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002981 e1yt3A2 002991837 Q87RC6_nD1 Q87RC6 Q87RC6_VIBPA VP0871 rnd Ribonuclease D 871 16-205 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011153 e1yt3A3 002991838 Q87RC6_nD2 Q87RC6 Q87RC6_VIBPA VP0871 rnd Ribonuclease D 871 211-310 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002980 e1yt3A1 002991839 Q87H18_nD2 Q87H18 Q87H18_VIBPA VPA1147 4226 316-400 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 001346704 e4r1mD3 002991840 Q87H18_nD1 Q87H18 Q87H18_VIBPA VPA1147 4226 11-315 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002534328 e6he2A3 002991841 Q87IV9_nD1 Q87IV9 Q87IV9_VIBPA VPA0497 3576 6-113 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002511580 e6j0eB1 002991842 Q87HT7_nD3 Q87HT7 Q87HT7_VIBPA VPA0869 3948 366-625 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 000393645 e3n3tB1 002991843 Q87HT7_nD2 Q87HT7 Q87HT7_VIBPA VPA0869 3948 201-365 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002991844 Q87HT7_nD1 Q87HT7 Q87HT7_VIBPA VPA0869 3948 6-180 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001826987 e4zmuA2 002991845 Q87S29_nD1 Q87S29 ISCR_VIBPA VP0595 iscR HTH-type transcriptional regulator IscR 595 1-145 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002512618 e6hsdA1 002991846 Q87PD3_nD3 Q87PD3 Q87PD3_VIBPA VP1583 1583 236-265,531-540 f a.17 2007 2007.2 2007.2.4 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphoinositide phosphatase 000185753 e4fyeA1 002991847 Q87PD3_nD4 Q87PD3 Q87PD3_VIBPA VP1583 1583 266-450 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000139956 e2x3gA1 002991848 Q87PD3_nD2 Q87PD3 Q87PD3_VIBPA VP1583 1583 96-195 f a.7 601 601.42 601.42.1 alpha bundles Four-helical up-and-down bundle Helical bundle in ROQ domain Helical bundle in ROQ domain 001513003 e4txaA2 002991849 Q87PD3_nD5 Q87PD3 Q87PD3_VIBPA VP1583 1583 451-530 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011098 e2fiwA1 002991850 Q87PD3_nD1 Q87PD3 Q87PD3_VIBPA VP1583 1583 16-95,196-235 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001758386 e1xwiA1 002991851 Q87PD3_nD6 Q87PD3 Q87PD3_VIBPA VP1583 1583 556-605 f a.11 3018 3018.1 3018.1.1 a+b two layers MesJ substrate recognition domain-like MesJ substrate recognition domain-like MesJ substrate recognition domain-like 000330723 e2e21A1 002991852 Q79YV3_nD1 Q79YV3 Q79YV3_VIBPA VP2603 2602 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002991853 Q79YV3_nD2 Q79YV3 Q79YV3_VIBPA VP2603 2602 91-155,266-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002496433 e6gz2A1 002991854 Q79YV3_nD3 Q79YV3 Q79YV3_VIBPA VP2603 2602 156-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002991855 Q87RY8_nD1 Q87RY8 Q87RY8_VIBPA VP0636 636 31-185 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 001548275 e4rlcA1 002991856 Q87KJ7_nD1 Q87KJ7 Q87KJ7_VIBPA VP2980 2-haloalkanoic acid dehalogenase 2979 6-238 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000154671 e3vayA1 002991857 Q87I92_nD1 Q87I92 Q87I92_VIBPA VPA0714 microbial collagenase 3793 46-330 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001147777 e2y3uA1 002991858 Q87I92_nD2 Q87I92 Q87I92_VIBPA VPA0714 microbial collagenase 3793 331-590 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001168933 e4ar9A1 002991859 Q87I92_nD3 Q87I92 Q87I92_VIBPA VPA0714 microbial collagenase 3793 601-705 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001069375 e2luwA1 002991860 Q87LW6_nD1 Q87LW6 Q87LW6_VIBPA VP2492 2492 11-405 f a.10 5049 5049.1 5049.1.1 alpha complex topology Ammonium transporter-related Ammonium transporter-related Ammonium transporter 002142445 e6eu6A1 002991861 Q87K58_nD1 Q87K58 Q87K58_VIBPA VPA0040 DUF413 domain-containing protein 3119 23-88 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 000002871 e2efvA1 002991862 Q87I42_nD1 Q87I42 Q87I42_VIBPA VPA0764 Transcriptional regulatory protein 3843 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002991863 Q87I42_nD2 Q87I42 Q87I42_VIBPA VPA0764 Transcriptional regulatory protein 3843 136-220 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002991864 Q87P64_nD2 Q87P64 Q87P64_VIBPA VP1654 Probable membrane transporter protein 1654 71-205 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002387848 e6cb2A2 002991865 Q87P64_nD1 Q87P64 Q87P64_VIBPA VP1654 Probable membrane transporter protein 1654 6-65,206-255 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002991866 Q87GQ9_nD3 Q87GQ9 Q87GQ9_VIBPA VPA1256 Site-specific DNA-methyltransferase (adenine-specific) 4335 96-140,261-480 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001933285 e5fdkD1 002991867 Q87GQ9_nD1 Q87GQ9 Q87GQ9_VIBPA VPA1256 Site-specific DNA-methyltransferase (adenine-specific) 4335 1-79 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004578 e1qgrA1 002991868 Q87GQ9_nD2 Q87GQ9 Q87GQ9_VIBPA VPA1256 Site-specific DNA-methyltransferase (adenine-specific) 4335 126-260,486-534 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 001234651 e4f62A2 002991869 Q87SY3_nD2 Q87SY3 Q87SY3_VIBPA VP0289 Cyclic nucleotide-binding domain-containing protein 289 141-185 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001567546 e4r8hB1 002991870 Q87SY3_nD1 Q87SY3 Q87SY3_VIBPA VP0289 Cyclic nucleotide-binding domain-containing protein 289 6-140 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000461551 e3dn7B1 002991871 Q87KL6_nD1 Q87KL6 Q87KL6_VIBPA VP2961 Lysoplasmalogenase 2960 16-205 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002429673 e6g7oA2 002991872 Q87TE6_nD1 Q87TE6 Q87TE6_VIBPA VP0124 DUF2959 domain-containing protein 124 21-110,131-213 f a.10 3684 3684.1 3684.1.1 alpha complex topology PSPTO4464 C-terminal domain-like PSPTO4464 C-terminal domain-like PSPTO4464 C-terminal domain-like 002703781 e7jh6B1 002991873 Q87Q96_nD2 Q87Q96 Q87Q96_VIBPA VP1254 DUF2797 domain-containing protein 1254 66-220 f a.12 821 821.1 821.1.1 a+b three layers GIY-YIG endonuclease GIY-YIG endonuclease GIY-YIG endonuclease 002759970 e7cq3A1 002991874 Q87Q96_nD1 Q87Q96 Q87Q96_VIBPA VP1254 DUF2797 domain-containing protein 1254 1-50,241-274 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002697715 e7a46D3 002991875 Q87L72_nD1 Q87L72 RS6_VIBPA VP2740 rpsF 30S ribosomal protein S6 2739 1-120 f a.11 304 304.12 304.12.1 a+b two layers Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6 002762930 e7m4zf1 002991876 Q87TC1_nD1 Q87TC1 Q87TC1_VIBPA VP0149 ATP-dependent Lon protease 149 86-140 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 001389208 e2mdvA1 002991877 Q87T55_nD3 Q87T55 Q87T55_VIBPA VP0215 215 436-725 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 001558583 e4v3gA1 002991878 Q87T55_nD1 Q87T55 Q87T55_VIBPA VP0215 215 26-290 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002991879 Q87T55_nD2 Q87T55 Q87T55_VIBPA VP0215 215 316-435 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 000185665 e4b2gB3 002991880 Q87I22_nD1 Q87I22 DEF2_VIBPA VPA0784 def2 Peptide deformylase 2 3863 1-165 f a.14 289 289.1 289.1.1 a+b complex topology Peptide deformylase Peptide deformylase Peptide deformylase 000142635 e3qu1A1 002991881 Q87GQ5_nD1 Q87GQ5 Q87GQ5_VIBPA VPA1260 HNH endonuclease 4339 1-160 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 002485694 e6ghcB2 002991882 Q87GQ5_nD2 Q87GQ5 Q87GQ5_VIBPA VPA1260 HNH endonuclease 4339 171-205 f a.7 4006 4006.1 4006.1.1 alpha bundles Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain 000003617 e1gqeA1 002991883 Q87RA9_nD1 Q87RA9 Q87RA9_VIBPA VP0888 4-hydroxybenzoyl-CoA thioesterase 888 1-145 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 002162065 e6fdgA1 002991884 Q87MF5_nD1 Q87MF5 Q87MF5_VIBPA VP2300 2300 21-103 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000051710 e1cnoG1 002991885 Q87SY8_nD1 Q87SY8 Q87SY8_VIBPA VP0284 DUF2780 domain-containing protein 284 46-155 f a.6 4198 4198.2 4198.2.1 alpha arrays TerB-like TTHA1432-like TTHA1432-like 000185030 e2yskA1 002991886 Q87T12_nD1 Q87T12 RL4_VIBPA VP0258 rplD 50S ribosomal protein L4 258 1-200 f a.17 7559 7559.1 7559.1.1 a/b three-layered sandwiches Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 002604495 e6spbE1 002991887 Q87NY9_nD1 Q87NY9 Q87NY9_VIBPA VP1729 1729 11-203 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000423492 e3p2hA1 002991888 Q87L01_nD1 Q87L01 ORN_VIBPA VP2823 orn Oligoribonuclease 2822 6-180 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002499661 e6n6aA1 002991889 Q87RF6_nD2 Q87RF6 Q87RF6_VIBPA VP0841 Nif3-like dinuclear metal center hexameric protein 841 96-220 f a.17 7509 7509.1 7509.1.1 a/b three-layered sandwiches NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like 002601457 e1nmpB1 002991890 Q87RF6_nD1 Q87RF6 Q87RF6_VIBPA VP0841 Nif3-like dinuclear metal center hexameric protein 841 1-95,221-250 f a.17 7509 7509.1 7509.1.1 a/b three-layered sandwiches NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like NIF3 (NGG1p interacting factor 3)-like 002601458 e1nmpB2 002991891 Q87GD0_nD2 Q87GD0 Q87GD0_VIBPA VPA1387 TniQ protein 4466 101-120,206-395 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 000422100 e3q2yA1 002991892 Q87GD0_nD1 Q87GD0 Q87GD0_VIBPA VPA1387 TniQ protein 4466 16-83,121-205 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001924053 e5jb3Y1 002991893 Q87LA9_nD2 Q87LA9 Q87LA9_VIBPA VP2703 2702 1-20,186-270 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002010856 e5uj7D3 002991894 Q87LA9_nD1 Q87LA9 Q87LA9_VIBPA VP2703 2702 21-185 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002128573 e5uj7E1 002991895 Q87ID1_nD1 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 6-140,286-355 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001225256 e3i9wA3 002991896 Q87ID1_nD3 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 356-420 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002991897 Q87ID1_nD4 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 421-465 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001392669 e4i5sB2 002991898 Q87ID1_nD6 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 536-695 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001481140 e4pl9A1 002991899 Q87ID1_nD2 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 141-285 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 001506007 e3o1jB1 002991900 Q87ID1_nD8 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 876-985 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002991901 Q87ID1_nD5 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 466-535 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002568310 e6qrjA3 002991902 Q87ID1_nD7 Q87ID1 Q87ID1_VIBPA VPA0675 Phosphorelay protein LuxU 3754 701-840 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002138611 e5o8zA1 002991903 Q87KM5_nD1 Q87KM5 GLPE_VIBPA VP2952 glpE Thiosulfate sulfurtransferase GlpE 2951 6-105 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 000010127 e1gmxA1 002991904 Q87IZ3_nD1 Q87IZ3 Q87IZ3_VIBPA VPA0463 UPF0231 protein 3542 6-90 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 002816472 e7ct1A3 002991905 Q87SB8_nD1 Q87SB8 TRMN6_VIBPA VP0506 tRNA1(Val) (adenine(37)-N6)-methyltransferase 506 6-239 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001279537 e3lpmB2 002991906 Q87FL6_nD2 Q87FL6 Q87FL6_VIBPA VPA1663 4742 141-290,376-410 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002662555 e4wrnA5 002991907 Q87FL6_nD1 Q87FL6 Q87FL6_VIBPA VPA1663 4742 18-140,291-375 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002662555 e4wrnA5 002991908 Q87PR7_nD1 Q87PR7 Q87PR7_VIBPA VP1434 1434 31-163 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000161689 e2hi2A1 002991909 Q87FK8_nD1 Q87FK8 Q87FK8_VIBPA VPA1671 4750 21-329 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000163034 e2nq2A1 002991910 Q87Q88_nD1 Q87Q88 Q87Q88_VIBPA VP1262 1262 36-125 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000989528 e2yeqB1 002991911 Q87Q88_nD2 Q87Q88 Q87Q88_VIBPA VP1262 1262 126-380,411-555 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000989529 e2yeqB2 002991912 Q87Q88_nD3 Q87Q88 Q87Q88_VIBPA VP1262 1262 381-410 f a.17 2007 2007.2 2007.2.4 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphoinositide phosphatase 000185753 e4fyeA1 002991913 Q87R85_nD1 Q87R85 Q87R85_VIBPA VP0912 TRAP transporter large permease protein 912 1-450 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002991914 Q87TB3_nD2 Q87TB3 Q87TB3_VIBPA VP0157 recG ATP-dependent DNA helicase RecG 157 46-145 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000386 e1gm5A1 002991915 Q87TB3_nD1 Q87TB3 Q87TB3_VIBPA VP0157 recG ATP-dependent DNA helicase RecG 157 6-45,151-175 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000003014 e1gm5A2 002991916 Q87TB3_nD3 Q87TB3 Q87TB3_VIBPA VP0157 recG ATP-dependent DNA helicase RecG 157 181-685 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009705 e1gm5A4 002991917 Q87RG9_nD2 Q87RG9 Q87RG9_VIBPA VP0827 827 381-525 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000167202 e3c85A1 002991918 Q87RG9_nD1 Q87RG9 Q87RG9_VIBPA VP0827 827 6-360 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001422103 e4czbB1 002991919 Q87L83_nD1 Q87L83 Q87L83_VIBPA VP2729 fur Ferric uptake regulation protein 2728 6-150 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001406002 e4mtdD1 002991920 Q87QR5_nD2 Q87QR5 Q87QR5_VIBPA VP1084 Multiubiquitin 1084 96-165 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006205 e1zud21 002991921 Q87QR5_nD1 Q87QR5 Q87QR5_VIBPA VP1084 Multiubiquitin 1084 21-95 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 001210566 e4a9aA8 002991922 Q87QR5_nD3 Q87QR5 Q87QR5_VIBPA VP1084 Multiubiquitin 1084 166-245 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000137074 e2kmmA1 002991923 Q87LW9_nD1 Q87LW9 Q87LW9_VIBPA VP2489 2489 1-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001137810 e1z47A1 002991924 Q87LW9_nD2 Q87LW9 Q87LW9_VIBPA VP2489 2489 241-343 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001265607 e2awnB5 002991925 Q87Q08_nD3 Q87Q08 Q87Q08_VIBPA VP1342 1342 306-595 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 000167992 e3ctzA1 002991926 Q87Q08_nD2 Q87Q08 Q87Q08_VIBPA VP1342 1342 156-305 f a.18 2484 2484.3 2484.3.1 mixed a+b and a/b Ribonuclease H-like Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 001885542 e5jqkA2 002991927 Q87Q08_nD1 Q87Q08 Q87Q08_VIBPA VP1342 1342 6-155 f a.18 2484 2484.3 2484.3.1 mixed a+b and a/b Ribonuclease H-like Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 000167993 e3ctzA2 002991928 Q87HF1_nD1 Q87HF1 Q87HF1_VIBPA VPA1014 4093 21-260,286-510 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001545111 e4r1iA1 002991929 Q87R80_nD1 Q87R80 CLPP_VIBPA VP0917 clpP ATP-dependent Clp protease proteolytic subunit 917 6-200 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 002570851 e6vfsK1 002991930 Q87P30_nD2 Q87P30 Q87P30_VIBPA VP1688 1688 86-205 f a.11 298 298.4 298.4.1 a+b two layers FwdE/GAPDH domain-like V-type ATPase subunit E V-type ATPase subunit E 001807471 e5b0oG1 002991931 Q87P30_nD1 Q87P30 Q87P30_VIBPA VP1688 1688 11-85 f a.21 3462 3462.1 3462.1.1 extended segments V-type proton ATPase subunit G V-type proton ATPase subunit G V-type proton ATPase subunit G 002537583 e6qumI1 002991932 Q87N62_nD2 Q87N62 Q87N62_VIBPA VP2013 2013 216-355 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002810966 e7oseA2 002991933 Q87N62_nD1 Q87N62 Q87N62_VIBPA VP2013 2013 11-215,356-365 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002667767 e6lodF2 002991934 Q87S41_nD1 Q87S41 Q87S41_VIBPA VP0583 Malate synthase 583 16-544 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000351986 e3cv1A1 002991935 Q87MU2_nD1 Q87MU2 Q87MU2_VIBPA VP2139 Transcriptional regulator 2139 11-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000162658 e2heoA1 002991936 Q87MU2_nD2 Q87MU2 Q87MU2_VIBPA VP2139 Transcriptional regulator 2139 96-195 f a.12 316 316.2 316.2.1 a+b three layers Nucleotidyltransferase-like Rv2827c C-terminal domain-like Rv2827c C-terminal domain-like 000078176 e1zelB2 002991937 Q87IM8_nD2 Q87IM8 Q87IM8_VIBPA VPA0579 3657 336-370 f 002991938 Q87IM8_nD1 Q87IM8 Q87IM8_VIBPA VPA0579 3657 16-335,371-579 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 002817957 e7mq9LO3 002991939 Q87MS3_nD1 Q87MS3 Q87MS3_VIBPA VP2158 Putative glucose-6-phosphate 1-epimerase 2158 6-294 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 000163179 e2htaA1 002991940 Q87SG3_nD2 Q87SG3 MURC_VIBPA VP0461 murC UDP-N-acetylmuramate--L-alanine ligase 461 111-325 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002164003 e6cauA1 002991941 Q87SG3_nD1 Q87SG3 MURC_VIBPA VP0461 murC UDP-N-acetylmuramate--L-alanine ligase 461 6-110 f a.17 2003 2003.1 2003.1.8 a/b three-layered sandwiches Rossmann-like Rossmann-related MurCD/PglD N-terminal domain-like 001254261 e2f00B6 002991942 Q87SG3_nD3 Q87SG3 MURC_VIBPA VP0461 murC UDP-N-acetylmuramate--L-alanine ligase 461 326-480 f a.17 7570 7570.1 7570.1.1 a/b three-layered sandwiches MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 001176254 e4hv4B5 002991943 Q87P86_nD1 Q87P86 Q87P86_VIBPA VP1632 1632 81-200 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002991944 Q87SA4_nD1 Q87SA4 RPPH_VIBPA VP0520 rppH RNA pyrophosphohydrolase 520 1-155 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 000382167 e2kdwA1 002991945 Q87S14_nD1 Q87S14 Q87S14_VIBPA VP0610 Ancillary SecYEG translocon subunit 610 1-200 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002814206 e7qe7O1 002991946 Q87NR3_nD1 Q87NR3 Q87NR3_VIBPA VP1805 Restriction endonuclease 1805 66-180 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001837446 e2ostB1 002991947 Q87NR3_nD2 Q87NR3 Q87NR3_VIBPA VP1805 Restriction endonuclease 1805 206-260 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001905866 e5f7qJ2 002991948 Q87S53_nD1 Q87S53 Q87S53_VIBPA VP0571 Phosphate-binding protein 571 26-120,261-319 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001544011 e4ombC2 002991949 Q87S53_nD2 Q87S53 Q87S53_VIBPA VP0571 Phosphate-binding protein 571 121-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001544010 e4ombC1 002991950 Q87PK2_nD2 Q87PK2 Q87PK2_VIBPA VP1501 PBP_domain domain-containing protein 1500 106-220 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002991951 Q87PK2_nD1 Q87PK2 Q87PK2_VIBPA VP1501 PBP_domain domain-containing protein 1500 26-105,221-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002991952 Q87SE3_nD3 Q87SE3 Q87SE3_VIBPA VP0481 481 241-400 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002991953 Q87SE3_nD2 Q87SE3 Q87SE3_VIBPA VP0481 481 141-240,401-470 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 001872648 e3ad7A2 002991954 Q87SE3_nD1 Q87SE3 Q87SE3_VIBPA VP0481 481 1-140 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 002538592 e6s6uH1 002991955 Q87MD3_nD1 Q87MD3 Q87MD3_VIBPA VP2323 DUF446 domain-containing protein 2323 1-104 f a.7 633 633.14 633.14.1 alpha bundles Bromodomain-like YqcC-like YqcC-like 000003666 e2hgkA1 002991956 Q87QC0_nD2 Q87QC0 Q87QC0_VIBPA VP1230 Acyl-coenzyme A dehydrogenase 1230 171-305 f a.5 4052 4052.1 4052.1.1 beta complex topology Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like 000044272 e1is2A1 002991957 Q87QC0_nD5 Q87QC0 Q87QC0_VIBPA VP1230 Acyl-coenzyme A dehydrogenase 1230 656-735 f a.6 3151 3151.1 3151.1.1 alpha arrays SPP1 phage GP23.1 SPP1 phage GP23.1 SPP1 phage GP23.1 000397561 e2xf5B1 002991958 Q87QC0_nD1 Q87QC0 Q87QC0_VIBPA VP1230 Acyl-coenzyme A dehydrogenase 1230 61-170 f a.6 4033 4033.1 4033.1.1 alpha arrays Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like 001171952 e3b96A6 002991959 Q87QC0_nD3 Q87QC0 Q87QC0_VIBPA VP1230 Acyl-coenzyme A dehydrogenase 1230 26-35,306-485 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 000054170 e1u8vC3 002991960 Q87QC0_nD4 Q87QC0 Q87QC0_VIBPA VP1230 Acyl-coenzyme A dehydrogenase 1230 36-60,486-655 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 001563531 e2uxwA4 002991961 Q87ND8_nD1 Q87ND8 Q87ND8_VIBPA VP1930 Lipoprotein 1930 62-125 f a.7 3711 3711.1 3711.1.1 alpha bundles LTXXQ motif family protein LTXXQ motif family protein LTXXQ motif family protein 001068647 e3layJ1 002991962 Q87FN8_nD1 Q87FN8 Q87FN8_VIBPA VPA1640 Undecaprenyl-diphosphate phosphatase 4719 11-45 f a.21 5022 5022.1 5022.1.1 extended segments Subunit XII of photosystem I reaction centre, PsaM Subunit XII of photosystem I reaction centre, PsaM Subunit XII of photosystem I reaction centre, PsaM 002448309 e6igzM1 002991963 Q87RB1_nD3 Q87RB1 Q87RB1_VIBPA VP0886 886 421-465,631-775 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002057079 e5mg3D1 002991964 Q87RB1_nD2 Q87RB1 Q87RB1_VIBPA VP0886 886 56-265,466-630 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001312388 e4k0eA7 002991965 Q87RB1_nD1 Q87RB1 Q87RB1_VIBPA VP0886 886 16-55,266-420 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002991966 Q87TD4_nD1 Q87TD4 Q87TD4_VIBPA VP0136 Type II secretion system core protein G 136 36-145 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000135845 e3fu1A1 002991967 Q87RL0_nD1 Q87RL0 Q87RL0_VIBPA VP0768 FlgO domain-containing protein 768 41-180 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 002066767 e2miiA1 002991968 Q87RY6_nD2 Q87RY6 Q87RY6_VIBPA VP0638 638 171-215 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001159643 e2r0qC4 002991969 Q87RY6_nD1 Q87RY6 Q87RY6_VIBPA VP0638 638 11-165 f a.17 7565 7565.1 7565.1.1 a/b three-layered sandwiches Resolvase-like Resolvase-like Resolvase-like 000134345 e3guvA1 002991970 Q87I05_nD3 Q87I05 GCSP_VIBPA VPA0801 gcvP Glycine dehydrogenase (decarboxylating) 3880 776-950 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002553605 e6i33A1 002991971 Q87I05_nD2 Q87I05 GCSP_VIBPA VPA0801 gcvP Glycine dehydrogenase (decarboxylating) 3880 391-450 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002553608 e6i33A4 002991972 Q87I05_nD1 Q87I05 GCSP_VIBPA VPA0801 gcvP Glycine dehydrogenase (decarboxylating) 3880 1-390,471-775 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001040130 e1wyuC1 002991973 Q87QS2_nD4 Q87QS2 Q87QS2_VIBPA VP1077 1077 336-395 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000154242 e4a8eA2 002991974 Q87QS2_nD3 Q87QS2 Q87QS2_VIBPA VP1077 1077 206-335 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000150341 e3vcfA1 002991975 Q87QS2_nD1 Q87QS2 Q87QS2_VIBPA VP1077 1077 6-90 f a.11 252 252.2 252.2.1 a+b two layers DNA-binding domain GCC-box binding domain-like GCC-box binding domain-like 000136649 e3ju0A1 002991976 Q87QS2_nD2 Q87QS2 Q87QS2_VIBPA VP1077 1077 96-205 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002991977 Q87HJ0_nD1 Q87HJ0 Q87HJ0_VIBPA VPA0973 4052 11-190 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160547 e2gfpA2 002991978 Q87HJ0_nD2 Q87HJ0 Q87HJ0_VIBPA VPA0973 4052 191-380 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160547 e2gfpA2 002991979 Q87NF8_nD1 Q87NF8 Q87NF8_VIBPA VP1910 TRAP transporter small permease protein 1910 6-165 f a.21 3579 3579.1 3579.1.1 extended segments NADH-quinone oxidoreductase subunit J NADH-quinone oxidoreductase subunit J NADH-quinone oxidoreductase subunit J 001005276 e4he8D1 002991980 Q87I89_nD2 Q87I89 Q87I89_VIBPA VPA0717 3796 86-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002819933 e7dmwC1 002991981 Q87I89_nD1 Q87I89 Q87I89_VIBPA VPA0717 3796 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001663571 e4x6gD2 002991982 Q87GE5_nD1 Q87GE5 Q87GE5_VIBPA VPA1370 Type III effector HopI1 4450 246-484 f a.10 3243 3243.1 3243.1.1 alpha complex topology VopL dimerization domain VopL dimerization domain VopL dimerization domain 000428210 e3seoB1 002991983 Q87SW5_nD1 Q87SW5 Q87SW5_VIBPA VP0307 Translocation and assembly module subunit TamA 307 13-95 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001145979 e2ly311 002991984 Q87SW5_nD2 Q87SW5 Q87SW5_VIBPA VP0307 Translocation and assembly module subunit TamA 307 96-185 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001174745 e4c00A2 002991985 Q87SW5_nD3 Q87SW5 Q87SW5_VIBPA VP0307 Translocation and assembly module subunit TamA 307 186-260 f a.15 3121 3121.1 3121.1.1 a+b duplicates or obligate multimers Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain Polypeptide transport-associated (POTRA) domain 001145746 e4bzaA2 002991986 Q87SW5_nD4 Q87SW5 Q87SW5_VIBPA VP0307 Translocation and assembly module subunit TamA 307 261-570 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001312446 e4c00A4 002991987 Q87S20_nD1 Q87S20 NDK_VIBPA VP0604 ndk Nucleoside diphosphate kinase 604 1-140 f a.11 304 304.34 304.34.1 a+b two layers Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases 002704612 e7jtki1 002991988 Q87H35_nD3 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 236-365 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002991989 Q87H35_nD7 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 726-873 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002568308 e6qrjA1 002991990 Q87H35_nD4 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 366-440 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002991991 Q87H35_nD1 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 6-165 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002991992 Q87H35_nD6 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 601-725 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104746 e2v0nA2 002991993 Q87H35_nD2 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 166-220 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002991994 Q87H35_nD5 Q87H35 Q87H35_VIBPA VPA1130 histidine kinase 4209 441-595 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002568309 e6qrjA2 002991995 Q87I15_nD1 Q87I15 Q87I15_VIBPA VPA0791 N-acetyltransferase domain-containing protein 3870 6-120 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000114497 e1y9wB1 002991996 Q87GM1_nD1 Q87GM1 Q87GM1_VIBPA VPA1294 4373 36-125 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 002552601 e6i0nA1 002991997 Q87N35_nD1 Q87N35 Q87N35_VIBPA VP2040 PNPLA domain-containing protein 2040 6-230,306-380 f a.17 2007 2007.1 2007.1.19 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like 001380481 e4akfA2 002991998 Q87S65_nD1 Q87S65 RLUD_VIBPA VP0559 rluD Ribosomal large subunit pseudouridine synthase D 559 1-75 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 000193323 e2istA2 002991999 Q87S65_nD2 Q87S65 RLUD_VIBPA VP0559 rluD Ribosomal large subunit pseudouridine synthase D 559 76-315 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 001177558 e2istA1 002992000 Q87PU7_nD1 Q87PU7 Q87PU7_VIBPA VP1404 GPW_gp25 domain-containing protein 1404 46-154 f a.15 283 283.2 283.2.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like gpW/gp25-like gpW/gp25-like 002409489 e6gj1D1 002992001 Q87KY8_nD2 Q87KY8 Q87KY8_VIBPA VP2836 2835 46-210 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000414808 e2y31A2 002992002 Q87KY8_nD1 Q87KY8 Q87KY8_VIBPA VP2836 2835 1-45 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000143172 e3rh2A1 002992003 Q87N66_nD2 Q87N66 Q87N66_VIBPA VP2009 2009 131-200 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 002332940 e5xt2C1 002992004 Q87N66_nD1 Q87N66 Q87N66_VIBPA VP2009 2009 6-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104669 e1yioA2 002992005 Q87MI2_nD1 Q87MI2 Q87MI2_VIBPA VP2273 dapA 4-hydroxy-tetrahydrodipicolinate synthase 2273 1-290 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000334039 e2ojpB1 002992006 Q877N5_nD1 Q877N5 Q877N5_VIBPA VP1566VPA0893 1566 26-155 f a.6 102 102.2 102.2.1 alpha arrays HhH/H2TH H2TH H2TH 002541731 e6nvmA1 002992007 Q87QC2_nD1 Q87QC2 Q87QC2_VIBPA VP1227 CrtC domain-containing protein 1227 56-250 f a.1 4252 4252.1 4252.1.1 beta barrels AttH-like AttH-like AttH-like 000000901 e2ichA1 002992008 Q87QC2_nD2 Q87QC2 Q87QC2_VIBPA VP1227 CrtC domain-containing protein 1227 256-374 f a.1 4252 4252.1 4252.1.1 beta barrels AttH-like AttH-like AttH-like 000000902 e2ichA2 002992009 Q87NI6_nD1 Q87NI6 Q87NI6_VIBPA VP1882 N-acetyltransferase domain-containing protein 1882 36-190 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001890011 e5hgzA1 002992010 Q87N49_nD1 Q87N49 PYRF_VIBPA VP2026 pyrF Orotidine 5'-phosphate decarboxylase 2026 1-230 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000095931 e1l2uA1 002992011 Q87GL8_nD1 Q87GL8 Q87GL8_VIBPA VPA1297 4376 6-45 f a.9 109 109.61 109.61.1 alpha superhelices Repetitive alpha hairpins Uncharacterized protein PF2048.1 Uncharacterized protein PF2048.1 002573020 e6ns8A1 002992012 Q87NC5_nD1 Q87NC5 Q87NC5_VIBPA VP1943 1943 1-180 f a.7 3883 3883.1 3883.1.1 alpha bundles CDP-alcohol phosphotransferase helical bundle domain CDP-alcohol phosphotransferase helical bundle domain CDP-alcohol phosphotransferase helical bundle domain 002793780 e7drjA1 002992013 Q87LR3_nD4 Q87LR3 SYA_VIBPA VP2548 alaS Alanine--tRNA ligase 2548 551-700 f a.11 309 309.1 309.1.2 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain 001262097 e2zzeA12 002992014 Q87LR3_nD3 Q87LR3 SYA_VIBPA VP2548 alaS Alanine--tRNA ligase 2548 446-550 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001299365 e3wqyB1 002992015 Q87LR3_nD1 Q87LR3 SYA_VIBPA VP2548 alaS Alanine--tRNA ligase 2548 1-255 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000379251 e3hxwA2 002992016 Q87LR3_nD6 Q87LR3 SYA_VIBPA VP2548 alaS Alanine--tRNA ligase 2548 736-860 f a.12 5104 5104.1 5104.1.1 a+b three layers C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases 002773983 e6nowA1 002992017 Q87LR3_nD5 Q87LR3 SYA_VIBPA VP2548 alaS Alanine--tRNA ligase 2548 701-730 f a.12 5104 5104.1 5104.1.1 a+b three layers C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases 002437390 e6mtzA2 002992018 Q87LR3_nD2 Q87LR3 SYA_VIBPA VP2548 alaS Alanine--tRNA ligase 2548 256-445 f a.10 613 613.1 613.1.1 alpha complex topology Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 000379250 e3hxwA1 002992019 Q87SF1_nD1 Q87SF1 Q87SF1_VIBPA VP0473 473 36-75 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002804768 e7ritA2 002992020 Q87SF1_nD2 Q87SF1 Q87SF1_VIBPA VP0473 473 201-225 f a.21 3478 3478.1 3478.1.1 extended segments Histidine kinase receptor ArcB membrane domain Histidine kinase receptor ArcB membrane domain Histidine kinase receptor ArcB membrane domain 000184743 e2ksdA1 002992021 Q87SF1_nD3 Q87SF1 Q87SF1_VIBPA VP0473 473 226-255 f a.8 4207 4207.1 4207.1.2 alpha duplicates or obligate multimers Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region 002758216 e7emfG1 002992022 Q87I59_nD1 Q87I59 Q87I59_VIBPA VPA0747 3826 11-178 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 002485481 e6gv9L1 002992023 Q87TD1_nD1 Q87TD1 Q87TD1_VIBPA VP0139 Type II secretion system protein J 139 23-209 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000006679 e2retB1 002992024 Q87P02_nD1 Q87P02 Q87P02_VIBPA VP1715 Multidrug ABC transporter permease 1716 41-160 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518824 e3cniA1 002992025 Q87P02_nD2 Q87P02 Q87P02_VIBPA VP1715 Multidrug ABC transporter permease 1716 6-35,171-380 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002415225 e6hzmB1 002992026 Q87M50_nD1 Q87M50 Q87M50_VIBPA VP2408 PAP2_3 domain-containing protein 2408 11-365 f a.7 180 180.1 180.1.1 alpha bundles Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase 001295906 e4px7A1 002992027 Q87PY4_nD1 Q87PY4 Q87PY4_VIBPA VP1366 pyridoxal kinase 1366 1-283 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 001870578 e5b6aA1 002992028 Q87ST7_nD1 Q87ST7 APAG_VIBPA VP0335 apaG Protein ApaG 335 6-120 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001767 e1xvsA1 002992029 Q87J50_nD1 Q87J50 Q87J50_VIBPA VPA0403 3482 1-285 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002992030 Q87LA0_nD3 Q87LA0 UVRA_VIBPA VP2712 uvrA UvrABC system protein A 2711 1-130,251-285,401-940 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001313602 e3pihA1 002992031 Q87LA0_nD1 Q87LA0 UVRA_VIBPA VP2712 uvrA UvrABC system protein A 2711 131-250 f a.11 3325 3325.1 3325.1.1 a+b two layers UvrB-binding domain of UvrA UvrB-binding domain of UvrA UvrB-binding domain of UvrA 001710529 e3fpnA1 002992032 Q87LA0_nD2 Q87LA0 UVRA_VIBPA VP2712 uvrA UvrABC system protein A 2711 286-400 f a.6 3326 3326.1 3326.1.1 alpha arrays DNA-binding domain in UvrA DNA-binding domain in UvrA DNA-binding domain in UvrA 001145788 e2r6fA4 002992033 Q87JT0_nD1 Q87JT0 Q87JT0_VIBPA VPA0168 Bcr/CflA family efflux transporter 3247 6-195 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001697376 e4yb9D1 002992034 Q87JT0_nD2 Q87JT0 Q87JT0_VIBPA VPA0168 Bcr/CflA family efflux transporter 3247 201-400 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680302 e4zp0A2 002992035 Q87S15_nD1 Q87S15 SYH_VIBPA VP0609 hisS Histidine--tRNA ligase 609 1-325 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000149132 e4e51A1 002992036 Q87S15_nD2 Q87S15 SYH_VIBPA VP0609 hisS Histidine--tRNA ligase 609 326-420 f a.17 7502 7502.1 7502.1.1 a/b three-layered sandwiches Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS 000010318 e1qe0A2 002992037 Q87MJ6_nD4 Q87MJ6 Q87MJ6_VIBPA VP2253 2253 431-485 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001788232 e5e3oB1 002992038 Q87MJ6_nD3 Q87MJ6 Q87MJ6_VIBPA VP2253 2253 131-140,306-395 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001724089 e5expA2 002992039 Q87MJ6_nD1 Q87MJ6 Q87MJ6_VIBPA VP2253 2253 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000169532 e3dzdA3 002992040 Q87MJ6_nD2 Q87MJ6 Q87MJ6_VIBPA VP2253 2253 141-305 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002992041 Q87RQ0_nD3 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 226-415 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 001762458 e3zgzD2 002992042 Q87RQ0_nD7 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 796-855 f a.11 221 221.15 221.15.1 a+b two layers beta-Grasp beta-grasp fold domain in leucine-tRNA ligase beta-grasp fold domain in leucine-tRNA ligase 001762460 e3zgzD4 002992043 Q87RQ0_nD4 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 431-485 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002528182 e4arcA8 002992044 Q87RQ0_nD6 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 626-790 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002488544 e4arcA3 002992045 Q87RQ0_nD1 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 151-190 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002488223 e3ziuA2 002992046 Q87RQ0_nD2 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 1-150,191-225,416-430,486-570,616-625 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002489536 e4qrdA1 002992047 Q87RQ0_nD5 Q87RQ0 SYL_VIBPA VP0727 leuS Leucine--tRNA ligase 727 571-615 f a.19 375 375.14 375.14.1 few secondary structure elements Rubredoxin-like Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 002488547 e4arcA6 002992048 Q87NG6_nD3 Q87NG6 Q87NG6_VIBPA VP1902 Cyclic nucleotide-binding protein 1902 286-475 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001179387 e3k7dA3 002992049 Q87NG6_nD4 Q87NG6 Q87NG6_VIBPA VP1902 Cyclic nucleotide-binding protein 1902 476-620 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002992050 Q87NG6_nD1 Q87NG6 Q87NG6_VIBPA VP1902 Cyclic nucleotide-binding protein 1902 6-140 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002071023 e5jizA1 002992051 Q87NG6_nD2 Q87NG6 Q87NG6_VIBPA VP1902 Cyclic nucleotide-binding protein 1902 141-285 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000312803 e2ja3C1 002992052 Q87FG1_nD1 Q87FG1 Q87FG1_VIBPA VPA1718 Transposase 4797 1-45 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 002036600 e5b3kA1 002992053 Q87QC3_nD4 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 401-455 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000868122 e4il3B1 002992054 Q87QC3_nD3 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 21-65,256-395 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002992055 Q87QC3_nD7 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 456-510,696-835 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002992056 Q87QC3_nD5 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 551-650 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002387808 e5xu1M2 002992057 Q87QC3_nD2 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 111-215 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002774949 e7arlE2 002992058 Q87QC3_nD1 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 66-110,216-255 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 000146706 e3ftjA1 002992059 Q87QC3_nD6 Q87QC3 Q87QC3_VIBPA VP1226 ABC transporter permease 1226 511-550,656-695 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002419887 e5ws4A2 002992060 Q87PF9_nD1 Q87PF9 Q87PF9_VIBPA VP1543 1543 16-205 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000146238 e3mk7B1 002992061 Q87JV8_nD1 Q87JV8 TRMYL_VIBPA VPA0140 Putative pseudouridine methyltransferase 3219 1-199 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 000113980 e2qwvB1 002992062 Q87QS1_nD1 Q87QS1 Q87QS1_VIBPA VP1078 NYN domain-containing protein 1078 11-175 f a.17 2006 2006.1 2006.1.4 a/b three-layered sandwiches HAD domain-like HAD domain-related PIN domain-like 000184882 e2qipA1 002992063 Q87QS1_nD2 Q87QS1 Q87QS1_VIBPA VP1078 NYN domain-containing protein 1078 176-249 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000151655 e2lh9A1 002992064 Q87MB0_nD1 Q87MB0 NQRE_VIBPA VP2347 nqrE Na(+)-translocating NADH-quinone reductase subunit E 2347 6-195 f a.10 3921 3921.1 3921.1.1 alpha complex topology Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D 001488368 e4p6vE1 002992065 Q87L24_nD1 Q87L24 Q87L24_VIBPA VP2792 phosphoribulokinase 2791 1-289 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009581 e1a7jA1 002992066 Q87S70_nD1 Q87S70 NCPP_VIBPA VP0554 Inosine/xanthosine triphosphatase 554 6-180 f a.17 7504 7504.1 7504.1.1 a/b three-layered sandwiches ITPase-like ITPase-like ITPase-like 000010339 e1u14A1 002992067 Q87PM3_nD2 Q87PM3 Q87PM3_VIBPA VP1478 DUF3080 domain-containing protein 1478 31-50,221-340 f a.7 603 603.2 603.2.1 alpha bundles STAT-like STAT STAT 001594872 e1y1uB2 002992068 Q87PM3_nD1 Q87PM3 Q87PM3_VIBPA VP1478 DUF3080 domain-containing protein 1478 66-220 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523044 e3vxbA2 002992069 Q79YV9_nD1 Q79YV9 Q79YV9_VIBPA VP2250 fliE Flagellar hook-basal body complex protein FliE 2250 26-103 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 002482296 e6h9xA2 002992070 Q87H78_nD1 Q87H78 RBSD_VIBPA VPA1087 rbsD D-ribose pyranase 4166 1-139 f a.12 301 301.1 301.1.1 a+b three layers Bacillus chorismate mutase-like L30e-like L30e-like 000377120 e2wcvB1 002992071 Q87RS1_nD1 Q87RS1 METN_VIBPA VP0706 metN Methionine import ATP-binding protein MetN 706 1-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002992072 Q87RS1_nD2 Q87RS1 METN_VIBPA VP0706 metN Methionine import ATP-binding protein MetN 706 246-344 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000145476 e3tuiC1 002992073 Q87MJ7_nD2 Q87MJ7 Q87MJ7_VIBPA VP2247 Flagellar assembly protein FliH 2247 146-265 f a.11 298 298.4 298.4.1 a+b two layers FwdE/GAPDH domain-like V-type ATPase subunit E V-type ATPase subunit E 001807471 e5b0oG1 002992074 Q87MJ7_nD1 Q87MJ7 Q87MJ7_VIBPA VP2247 Flagellar assembly protein FliH 2247 66-140 f a.21 3464 3464.1 3464.1.1 extended segments Helical region in V-type proton ATPase subunit E Helical region in V-type proton ATPase subunit E Helical region in V-type proton ATPase subunit E 001509030 e4dt0A2 002992075 Q87NG8_nD2 Q87NG8 Q87NG8_VIBPA VP1900 Aminotransferase 1900 351-414 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001193785 e4f4eA2 002992076 Q87NG8_nD1 Q87NG8 Q87NG8_VIBPA VP1900 Aminotransferase 1900 6-350 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002711725 e6t3vA1 002992077 Q87LJ7_nD1 Q87LJ7 Q87LJ7_VIBPA VP2615 2614 1-340 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002554619 e6ojzD1 002992078 Q87SR1_nD1 Q87SR1 Q87SR1_VIBPA VP0361 361 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002992079 Q87SR1_nD2 Q87SR1 Q87SR1_VIBPA VP0361 361 131-225 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001824448 e5ed4E1 002992080 Q87SG0_nD2 Q87SG0 Q87SG0_VIBPA VP0464 ftsZ Cell division protein FtsZ 464 201-325 f a.12 301 301.6 301.6.1 a+b three layers Bacillus chorismate mutase-like Tubulin C-terminal domain-like Tubulin C-terminal domain-like 002576397 e6unxA1 002992081 Q87SG0_nD1 Q87SG0 Q87SG0_VIBPA VP0464 ftsZ Cell division protein FtsZ 464 1-200 f a.17 2003 2003.1 2003.1.6 a/b three-layered sandwiches Rossmann-like Rossmann-related Tubulin nucleotide-binding domain-like 000009421 e2vapA2 002992082 Q87LD8_nD1 Q87LD8 Q87LD8_VIBPA VP2674 2673 1-85 f a.11 322 322.1 322.1.1 a+b two layers HPr-like HPr-like HPr-like 000407943 e3le3B1 002992083 Q87RA4_nD1 Q87RA4 Q87RA4_VIBPA VP0893 893 1-180 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002164002 e6caaA1 002992084 Q87MD0_nD1 Q87MD0 Q87MD0_VIBPA VP2326 2326 1-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002707129 e7kyjB1 002992085 Q87SP3_nD2 Q87SP3 Q87SP3_VIBPA VP0379 Lipoprotein 379 111-220 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518748 e1p99A2 002992086 Q87SP3_nD1 Q87SP3 Q87SP3_VIBPA VP0379 Lipoprotein 379 31-110,221-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523566 e4qhqA2 002992087 Q87NI0_nD1 Q87NI0 Q87NI0_VIBPA VP1888 Transposase 1888 16-65 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 000060301 e2eulD1 002992088 Q87IN6_nD1 Q87IN6 Q87IN6_VIBPA VPA0570 N-acetyltransferase domain-containing protein 3649 16-25,71-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011068 e1xmtA1 002992089 Q87FG0_nD1 Q87FG0 Q87FG0_VIBPA VPA1719 CENP-V/GFA domain-containing protein 4798 1-64 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002831870 e7qepP21 002992090 Q87SQ7_nD1 Q87SQ7 Q87SQ7_VIBPA VP0365 365 1-210 f a.7 590 590.1 590.1.1 alpha bundles Citrobacter dihydroxyacetone kinase extra ATP-binding domain Citrobacter dihydroxyacetone kinase extra ATP-binding domain Citrobacter dihydroxyacetone kinase extra ATP-binding domain 000141979 e3pnlB1 002992091 Q87IP0_nD2 Q87IP0 Q87IP0_VIBPA VPA0566 3645 181-380 f a.7 4002 4002.1 4002.1.1 alpha bundles alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes alpha-helical domain in dehydroquinate synthase-like enzymes 000352535 e3bfjT1 002992092 Q87IP0_nD1 Q87IP0 Q87IP0_VIBPA VPA0566 3645 6-180 f a.17 2007 2007.1 2007.1.7 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Rossmann-like domain in dehydroquinate synthase-like enzymes 000142387 e3owoA2 002992093 Q87FC7_nD1 Q87FC7 Q87FC7_VIBPA VPA1752 4831 6-405 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 002754816 e7npdA1 002992094 Q87SU0_nD1 Q87SU0 Q87SU0_VIBPA VP0332 ThrE_2 domain-containing protein 332 11-155 f a.10 1002 1002.1 1002.1.1 alpha complex topology Fluoride ion channel Fluoride ion channel Fluoride ion channel 001877606 e5kbnB1 002992095 Q87FG6_nD3 Q87FG6 Q87FG6_VIBPA VPA1713 4792 251-305 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001762220 e3w6vA1 002992096 Q87FG6_nD2 Q87FG6 Q87FG6_VIBPA VPA1713 4792 196-250 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670618 e6swiA1 002992097 Q87FG6_nD1 Q87FG6 Q87FG6_VIBPA VPA1713 4792 11-195 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002516467 e6nwoD1 002992098 Q87GB5_nD1 Q87GB5 MALK_VIBPA VPA1402 malK Maltose/maltodextrin import ATP-binding protein MalK 4481 1-235 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001567588 e4tquS2 002992099 Q87GB5_nD2 Q87GB5 MALK_VIBPA VPA1402 malK Maltose/maltodextrin import ATP-binding protein MalK 4481 236-365 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001265607 e2awnB5 002992100 Q87HK0_nD1 Q87HK0 Q87HK0_VIBPA VPA0963 4042 6-235 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004911 e1pw4A1 002992101 Q87HK0_nD2 Q87HK0 Q87HK0_VIBPA VPA0963 4042 236-460 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004912 e1pw4A2 002992102 Q87NZ4_nD1 Q87NZ4 Q87NZ4_VIBPA VP1724 1724 16-248 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000137783 e3hl8A1 002992103 Q87FT8_nD1 Q87FT8 Q87FT8_VIBPA VPA1590 ABM domain-containing protein 4669 1-95 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000159048 e2bbeA1 002992104 Q87FR4_nD1 Q87FR4 Q87FR4_VIBPA VPA1614 4693 71-95 f a.21 5040 5040.1 5040.1.1 extended segments Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region 001172498 e2yevB5 002992105 Q87JE6_nD1 Q87JE6 Q87JE6_VIBPA VPA0307 3386 1-215 f a.17 7561 7561.1 7561.1.1 a/b three-layered sandwiches Isochorismatase-like hydrolases Isochorismatase-like hydrolases Isochorismatase-like hydrolases 000377167 e2wtaA1 002992106 Q87IR9_nD1 Q87IR9 Q87IR9_VIBPA VPA0537 Cytochrome c oxidase subunit 1 3616 31-545 f a.9 5038 5038.1 5038.1.1 alpha superhelices Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 000411715 e3omnA1 002992107 Q87G11_nD1 Q87G11 Q87G11_VIBPA VPA1507 4586 31-180 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 000139607 e3jwnG1 002992108 Q87Q95_nD1 Q87Q95 Q87Q95_VIBPA VP1255 1255 1-240 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001548159 e4xhcA1 002992109 Q87Q95_nD2 Q87Q95 Q87Q95_VIBPA VP1255 1255 241-435 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002992110 Q79YV7_nD1 Q79YV7 Q79YV7_VIBPA VP2252 histidine kinase 2252 6-115 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002710376 e6ph4B3 002992111 Q79YV7_nD2 Q79YV7 Q79YV7_VIBPA VP2252 histidine kinase 2252 116-185 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002992112 Q79YV7_nD3 Q79YV7 Q79YV7_VIBPA VP2252 histidine kinase 2252 186-340 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001290979 e4q20A1 002992113 Q87IA5_nD1 Q87IA5 Q87IA5_VIBPA VPA0701 3780 6-185 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002490209 e6e9nB1 002992114 Q87IA5_nD2 Q87IA5 Q87IA5_VIBPA VPA0701 3780 196-410 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160547 e2gfpA2 002992115 Q87SH5_nD1 Q87SH5 Y448_VIBPA VP0448 UPF0102 protein VP0448 448 11-120 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000185261 e3fovA1 002992116 Q87L41_nD1 Q87L41 TUSC_VIBPA VP2775 tusC Protein TusC homolog 2774 1-118 f a.17 7545 7545.1 7545.1.1 a/b three-layered sandwiches YchN-like YchN-like YchN-like 000010550 e2d1pB1 002992117 Q87TD5_nD2 Q87TD5 Q87TD5_VIBPA VP0135 General secretion pathway protein F 135 61-175 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001817768 e3jc9Cb1 002992118 Q87TD5_nD1 Q87TD5 Q87TD5_VIBPA VP0135 General secretion pathway protein F 135 1-45 f a.11 3115 3115.6 3115.6.1 a+b two layers GP2-like Bacterial RNA polymerase subunit epsilon Bacterial RNA polymerase subunit epsilon 002795525 e7f75H1 002992119 Q87TD5_nD3 Q87TD5 Q87TD5_VIBPA VP0135 General secretion pathway protein F 135 176-235,386-400 f a.8 3285 3285.1 3285.1.1 alpha duplicates or obligate multimers Alix V domain Alix V domain Alix V domain 001924182 e5lm1A1 002992120 Q87TD5_nD4 Q87TD5 Q87TD5_VIBPA VP0135 General secretion pathway protein F 135 241-385 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001817769 e3jc9Cb2 002992121 Q87S26_nD1 Q87S26 Q87S26_VIBPA VP0598 Iron-binding protein IscA 598 1-105 f a.5 80 80.1 80.1.1 beta complex topology HesB-like domain HesB-like domain HesB-like domain 000159214 e2d2aA1 002992122 Q87S11_nD2 Q87S11 Q87S11_VIBPA VP0613 Metal-dependent hydrolase 613 121-290 f a.11 309 309.1 309.1.2 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain 002588826 e6vu9A3 002992123 Q87S11_nD1 Q87S11 Q87S11_VIBPA VP0613 Metal-dependent hydrolase 613 1-120 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001299365 e3wqyB1 002992124 Q87RA1_nD1 Q87RA1 Q87RA1_VIBPA VP0896 896 1-255 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 002603310 e5kymA1 002992125 Q87NW1_nD1 Q87NW1 Q87NW1_VIBPA VP1757 Sulfate ABC transporter permease 1757 31-235,256-375 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001694959 e4rjwA1 002992126 Q87I27_nD1 Q87I27 Q87I27_VIBPA VPA0779 AAA_28 domain-containing protein 3858 21-203 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002832976 e7qsdO1 002992127 Q87JF7_nD1 Q87JF7 Q87JF7_VIBPA VPA0296 3375 1-345 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001886304 e5lsmE1 002992128 Q87JJ9_nD1 Q87JJ9 Q87JJ9_VIBPA VPA0250 APH domain-containing protein 3329 1-270 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001498350 e4wh3A1 002992129 Q87LF8_nD2 Q87LF8 PYRB_VIBPA VP2654 pyrB Aspartate carbamoyltransferase 2653 16-30,136-305 f a.17 2003 2003.1 2003.1.14 a/b three-layered sandwiches Rossmann-like Rossmann-related Aspartate/ornithine carbamoyltransferase 002736753 e6ys6C2 002992130 Q87LF8_nD1 Q87LF8 PYRB_VIBPA VP2654 pyrB Aspartate carbamoyltransferase 2653 1-135 f a.17 2003 2003.1 2003.1.14 a/b three-layered sandwiches Rossmann-like Rossmann-related Aspartate/ornithine carbamoyltransferase 000132250 e1r0bF2 002992131 Q87N63_nD1 Q87N63 Q87N63_VIBPA VP2011 2012 46-245 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002769939 e7b04A1 002992132 Q87HS9_nD1 Q87HS9 PXPA_VIBPA VPA0877 pxpA 5-oxoprolinase subunit A 3956 6-245 f a.16 2002 2002.3 2002.3.1 a/b barrels TIM beta/alpha-barrel Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 000142108 e2xu2A1 002992133 Q87IC3_nD1 Q87IC3 Q87IC3_VIBPA VPA0683 3762 31-165,186-508 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 000010248 e1p49A1 002992134 Q87QP2_nD1 Q87QP2 Q87QP2_VIBPA VP1107 Replication-associated recombination protein A 1107 6-165 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001233034 e3pvsD7 002992135 Q87QP2_nD2 Q87QP2 Q87QP2_VIBPA VP1107 Replication-associated recombination protein A 1107 166-255 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001233035 e3pvsD8 002992136 Q87QP2_nD3 Q87QP2 Q87QP2_VIBPA VP1107 Replication-associated recombination protein A 1107 256-449 f a.6 138 138.1 138.1.1 alpha arrays DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain 001233033 e3pvsD6 002992137 Q87PN4_nD1 Q87PN4 Q87PN4_VIBPA VP1467 1467 1-170,356-375 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002992138 Q87PN4_nD2 Q87PN4 Q87PN4_VIBPA VP1467 1467 171-355 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001870463 e4qlbD2 002992139 Q87HP2_nD2 Q87HP2 Q87HP2_VIBPA VPA0921 NAD(P) transhydrogenase subunit beta 4000 276-458 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 001281281 e4j1tC1 002992140 Q87HP2_nD1 Q87HP2 Q87HP2_VIBPA VPA0921 NAD(P) transhydrogenase subunit beta 4000 6-270 f a.7 3892 3892.1 3892.1.1 alpha bundles Transhydrogeanse domain II Transhydrogeanse domain II Transhydrogeanse domain II 001491962 e4o9uB1 002992141 Q87QA3_nD2 Q87QA3 SERC_VIBPA VP1247 serC Phosphoserine aminotransferase 1247 301-364 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001193010 e4atpI3 002992142 Q87QA3_nD1 Q87QA3 SERC_VIBPA VP1247 serC Phosphoserine aminotransferase 1247 6-300 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001151783 e1bjoA3 002992143 Q87TH1_nD1 Q87TH1 TATA_VIBPA VP0098 tatA Sec-independent protein translocase protein TatA 98 6-45 f a.21 3473 3473.1 3473.1.1 extended segments Twin-arginine transport (Tat) system component TatA Twin-arginine transport (Tat) system component TatA Twin-arginine transport (Tat) system component TatA 000978795 e2lzsC1 002992144 Q87HV1_nD2 Q87HV1 Q87HV1_VIBPA VPA0855 3934 366-580 f a.14 805 805.1 805.1.1 a+b complex topology 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 002530383 e4uwqG1 002992145 Q87HV1_nD1 Q87HV1 Q87HV1_VIBPA VPA0855 3934 11-365 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000145643 e3ztvA1 002992146 Q87FX1_nD1 Q87FX1 Q87FX1_VIBPA VPA1553 4632 216-325 f a.11 3186 3186.1 3186.1.1 a+b two layers C-terminal domain of FliK C-terminal domain of FliK C-terminal domain of FliK 000146964 e2rrlA1 002992147 Q87GF2_nD1 Q87GF2 Q87GF2_VIBPA VPA1364 Type I site-specific deoxyribonuclease 4443 21-50 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 000136279 e3fx7A1 002992148 Q87GF2_nD2 Q87GF2 Q87GF2_VIBPA VPA1364 Type I site-specific deoxyribonuclease 4443 56-185,211-225 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000004814 e1or7A2 002992149 Q87TD7_nD4 Q87TD7 Q87TD7_VIBPA VP0133 133 261-345 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002468383 e6i1yC2 002992150 Q87TD7_nD3 Q87TD7 Q87TD7_VIBPA VP0133 133 186-260 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002553415 e6hcgF5 002992151 Q87TD7_nD5 Q87TD7 Q87TD7_VIBPA VP0133 133 346-675 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002468382 e6i1yC1 002992152 Q87TD7_nD2 Q87TD7 Q87TD7_VIBPA VP0133 133 111-185 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002553412 e6hcgF2 002992153 Q87TD7_nD1 Q87TD7 Q87TD7_VIBPA VP0133 133 26-105 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 001833073 e4e9jA4 002992154 Q87N59_nD2 Q87N59 Q87N59_VIBPA VP2016 Cytochrome C 2016 206-345 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001890615 e5lo9A1 002992155 Q87N59_nD1 Q87N59 Q87N59_VIBPA VP2016 Cytochrome C 2016 41-205 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001890616 e5lo9A2 002992156 P22097_nD2 P22097 TRPB1_VIBPA VP1960 trpB1 Tryptophan synthase beta chain 1 1960 201-390 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002582652 e6o1hB2 002992157 P22097_nD1 P22097 TRPB1_VIBPA VP1960 trpB1 Tryptophan synthase beta chain 1 1960 6-200 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002582651 e6o1hB1 002992158 Q87FY4_nD1 Q87FY4 Q87FY4_VIBPA VPA1536 Flagellar M-ring protein 4615 71-130 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 000157557 e1yj7A2 002992159 Q87FY4_nD2 Q87FY4 Q87FY4_VIBPA VPA1536 Flagellar M-ring protein 4615 136-255 f a.11 327 327.13 327.13.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif I in type III secretion system Ring-building motif I in type III secretion system 002726985 e7bk0X2 002992160 Q87FY4_nD4 Q87FY4 Q87FY4_VIBPA VPA1536 Flagellar M-ring protein 4615 451-475 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002992161 Q87FY4_nD3 Q87FY4 Q87FY4_VIBPA VPA1536 Flagellar M-ring protein 4615 256-310,361-435 f a.11 327 327.13 327.13.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif I in type III secretion system Ring-building motif I in type III secretion system 002726984 e7bk0X1 002992162 Q87G55_nD5 Q87G55 Q87G55_VIBPA VPA1462 4541 356-455 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002608170 e6tz4O1 002992163 Q87G55_nD2 Q87G55 Q87G55_VIBPA VPA1462 4541 51-190 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 000162589 e2d4uA1 002992164 Q87G55_nD1 Q87G55 Q87G55_VIBPA VPA1462 4541 1-45,191-215 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002992165 Q87G55_nD4 Q87G55 Q87G55_VIBPA VPA1462 4541 271-355,456-540 f 002992166 Q87G55_nD3 Q87G55 Q87G55_VIBPA VPA1462 4541 216-270 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002992167 Q87KW5_nD2 Q87KW5 Q87KW5_VIBPA VP2860 Superoxide dismutase 2859 86-200 f a.12 228 228.1 228.1.1 a+b three layers Fe,Mn superoxide dismutase (SOD)-C Fe,Mn superoxide dismutase (SOD)-C Fe,Mn superoxide dismutase (SOD)-C 001674652 e5a9gA1 002992168 Q87KW5_nD1 Q87KW5 Q87KW5_VIBPA VP2860 Superoxide dismutase 2859 1-85 f a.7 192 192.3 192.3.1 alpha bundles Long alpha-hairpin Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), N-terminal domain 001674653 e5a9gA2 002992169 Q87PL1_nD2 Q87PL1 Q87PL1_VIBPA VP1491 DUF350 domain-containing protein 1491 41-65 f a.3 3223 3223.1 3223.1.1 beta sandwiches Amiloride-sensitive cation channel 2 Amiloride-sensitive cation channel 2 Amiloride-sensitive cation channel 2 002593142 e6vtkA1 002992170 Q87PL1_nD1 Q87PL1 Q87PL1_VIBPA VP1491 DUF350 domain-containing protein 1491 6-35 f a.21 3390 3390.1 3390.1.1 extended segments Photosystem II reaction center protein T, PsbT Photosystem II reaction center protein T, PsbT Photosystem II reaction center protein T, PsbT 002798792 e7n8oT1 002992171 Q87T28_nD1 Q87T28 Q87T28_VIBPA VP0242 DUF3135 domain-containing protein 242 16-90 f a.7 181 181.1 181.1.1 alpha bundles Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins 000138708 e3kl4A3 002992172 Q87I96_nD3 Q87I96 Q87I96_VIBPA VPA0710 histidine kinase 3789 246-420 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223391 e3d2rB3 002992173 Q87I96_nD4 Q87I96 Q87I96_VIBPA VPA0710 histidine kinase 3789 426-555 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104746 e2v0nA2 002992174 Q87I96_nD2 Q87I96 Q87I96_VIBPA VPA0710 histidine kinase 3789 151-255 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001389315 e4mt8A1 002992175 Q87I96_nD5 Q87I96 Q87I96_VIBPA VPA0710 histidine kinase 3789 561-680 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104748 e2v0nA3 002992176 Q87I96_nD1 Q87I96 Q87I96_VIBPA VPA0710 histidine kinase 3789 6-140 f a.7 633 633.22 633.22.1 alpha bundles Bromodomain-like Vitamin K epoxide reductase (VKOR) Vitamin K epoxide reductase (VKOR) 001282122 e4nv5B2 002992177 Q87S38_nD1 Q87S38 Q87S38_VIBPA VP0586 Peptidase S1 domain-containing protein 586 27-340 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000157313 e1ym0A1 002992178 Q87L51_nD4 Q87L51 Q87L51_VIBPA VP2764 Bifunctional aspartokinase/homoserine dehydrogenase 2763 451-600,786-800 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009115 e1ebfA2 002992179 Q87L51_nD3 Q87L51 Q87L51_VIBPA VP2764 Bifunctional aspartokinase/homoserine dehydrogenase 2763 381-445 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005262 e2j0wA2 002992180 Q87L51_nD1 Q87L51 Q87L51_VIBPA VP2764 Bifunctional aspartokinase/homoserine dehydrogenase 2763 6-290 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 000338337 e3c1mC3 002992181 Q87L51_nD5 Q87L51 Q87L51_VIBPA VP2764 Bifunctional aspartokinase/homoserine dehydrogenase 2763 601-785 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000006757 e1ebfA1 002992182 Q87L51_nD2 Q87L51 Q87L51_VIBPA VP2764 Bifunctional aspartokinase/homoserine dehydrogenase 2763 306-380 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 002410348 e6mx1A2 002992183 Q87MQ1_nD1 Q87MQ1 APT_VIBPA VP2180 apt Adenine phosphoribosyltransferase 2180 6-180 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 002448366 e5zc7A1 002992184 Q87K62_nD3 Q87K62 Q87K62_VIBPA VPA0036 Glycerol kinase 3115 186-285 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001282261 e3r3pB1 002992185 Q87K62_nD1 Q87K62 Q87K62_VIBPA VPA0036 Glycerol kinase 3115 6-70 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 000046676 e1tntA1 002992186 Q87K62_nD2 Q87K62 Q87K62_VIBPA VPA0036 Glycerol kinase 3115 76-155 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 000046676 e1tntA1 002992187 Q87TA7_nD1 Q87TA7 Q87TA7_VIBPA VP0163 Protein TonB 163 121-205 f a.11 272 272.1 272.1.1 a+b two layers TolA/TonB C-terminal domain TolA/TonB C-terminal domain TolA/TonB C-terminal domain 002534572 e6i97D1 002992188 Q87K80_nD1 Q87K80 Q87K80_VIBPA VPA0018 Outer membrane lipoprotein-sorting protein 3097 26-250 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 000166794 e3buuA1 002992189 Q87JP6_nD2 Q87JP6 Q87JP6_VIBPA VPA0202 3281 91-150 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001647796 e3fppB3 002992190 Q87JP6_nD1 Q87JP6 Q87JP6_VIBPA VPA0202 3281 6-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002723200 e7bqqA1 002992191 Q87JP6_nD3 Q87JP6 Q87JP6_VIBPA VPA0202 3281 151-335 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002992192 Q87QJ3_nD1 Q87QJ3 Q87QJ3_VIBPA VP1156 1156 1-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001503460 e4rguB1 002992193 Q03473_nD1 Q03473 FLAL_VIBPA VPA1548 lafA Lateral flagellin 4627 6-284 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002992194 Q87FR0_nD4 Q87FR0 GLGB_VIBPA VPA1618 glgB 1,4-alpha-glucan branching enzyme GlgB 4697 651-755 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 001163998 e3k1dA6 002992195 Q87FR0_nD3 Q87FR0 GLGB_VIBPA VPA1618 glgB 1,4-alpha-glucan branching enzyme GlgB 4697 251-650 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002031882 e5gquA1 002992196 Q87FR0_nD1 Q87FR0 GLGB_VIBPA VPA1618 glgB 1,4-alpha-glucan branching enzyme GlgB 4697 36-135 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001164000 e3k1dA8 002992197 Q87FR0_nD2 Q87FR0 GLGB_VIBPA VPA1618 glgB 1,4-alpha-glucan branching enzyme GlgB 4697 136-250 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002031883 e5gquA2 002992198 Q87KQ6_nD1 Q87KQ6 Q87KQ6_VIBPA VP2920 2919 6-163 f a.7 601 601.31 601.31.1 alpha bundles Four-helical up-and-down bundle Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 000184868 e2p7vA1 002992199 Q87NP8_nD1 Q87NP8 Q87NP8_VIBPA VP1820 Putative mRNA interferase YoeB 1820 6-90 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 000415025 e3oeiH1 002992200 Q87NH6_nD3 Q87NH6 Q87NH6_VIBPA VP1892 1892 301-360,431-480 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002992201 Q87NH6_nD4 Q87NH6 Q87NH6_VIBPA VP1892 1892 361-430 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002608170 e6tz4O1 002992202 Q87NH6_nD1 Q87NH6 Q87NH6_VIBPA VP1892 1892 6-200 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000006839 e3by8A1 002992203 Q87NH6_nD2 Q87NH6 Q87NH6_VIBPA VP1892 1892 201-255 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002992204 Q87NH6_nD5 Q87NH6 Q87NH6_VIBPA VP1892 1892 256-300,481-540 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001447965 e4uxvA5 002992205 Q87RL7_nD2 Q87RL7 Y761_VIBPA VP0761 UPF0319 protein VP0761 761 171-195 f a.6 3009 3009.1 3009.1.1 alpha arrays Insertion subdomain in DsbA-like Insertion subdomain in DsbA-like Insertion subdomain in DsbA-like 002796737 e7kuwA1 002992206 Q87RL7_nD1 Q87RL7 Y761_VIBPA VP0761 UPF0319 protein VP0761 761 21-155 f a.11 295 295.1 295.1.1 a+b two layers ssDNA-binding transcriptional regulator domain-like ssDNA-binding transcriptional regulator domain ssDNA-binding transcriptional regulator domain 000146266 e3nm7A1 002992207 Q87TC5_nD1 Q87TC5 Q87TC5_VIBPA VP0145 145 6-180 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 000006235 e1vhzA1 002992208 Q87RZ8_nD1 Q87RZ8 Q87RZ8_VIBPA VP0626 Lipase_3 domain-containing protein 626 1-255 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000150282 e2yijA1 002992209 Q87RZ8_nD2 Q87RZ8 Q87RZ8_VIBPA VP0626 Lipase_3 domain-containing protein 626 256-375 f a.8 1140 1140.1 1140.1.1 alpha duplicates or obligate multimers Traversal protein CelTOS Traversal protein CelTOS Traversal protein CelTOS 001942242 e5tszA1 002992210 Q87QK6_nD1 Q87QK6 HIS6_VIBPA VP1143 hisF Imidazole glycerol phosphate synthase subunit HisF 1143 1-255 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001108878 e4evzA1 002992211 Q87PT9_nD1 Q87PT9 Q87PT9_VIBPA VP1412 Type VI secretion system lipoprotein TssJ 1412 31-155 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001031099 e3zhnA1 002992212 Q87MN9_nD2 Q87MN9 Q87MN9_VIBPA VP2192 asd Aspartate-semialdehyde dehydrogenase 2192 131-315 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000339489 e2r00C1 002992213 Q87MN9_nD1 Q87MN9 Q87MN9_VIBPA VP2192 asd Aspartate-semialdehyde dehydrogenase 2192 6-130,316-335 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000339490 e2r00C2 002992214 Q87HF9_nD3 Q87HF9 Q87HF9_VIBPA VPA1006 4085 161-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600822 e3hhfA1 002992215 Q87HF9_nD2 Q87HF9 Q87HF9_VIBPA VPA1006 4085 81-160,266-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002992216 Q87HF9_nD1 Q87HF9 Q87HF9_VIBPA VPA1006 4085 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002992217 Q87K34_nD1 Q87K34 Q87K34_VIBPA VPA0064 Lactamase_B domain-containing protein 3143 26-288 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 002628065 e6uxuA1 002992218 Q87I86_nD1 Q87I86 Q87I86_VIBPA VPA0720 Pilus assembly protein CpaB 3799 41-110 f a.1 70 70.3 70.3.1 beta barrels beta-clip SET domain-like SET domain-like 001005527 e3uplA3 002992219 Q87I86_nD2 Q87I86 Q87I86_VIBPA VPA0720 Pilus assembly protein CpaB 3799 111-225 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001842581 e5iw7A2 002992220 Q87RN4_nD4 Q87RN4 RF1_VIBPA VP0743 prfA Peptide chain release factor 1 743 291-355 f a.11 330 330.3 330.3.1 a+b two layers dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like 001002370 e1zbtA2 002992221 Q87RN4_nD3 Q87RN4 RF1_VIBPA VP0743 prfA Peptide chain release factor 1 743 216-290 f a.11 330 330.3 330.3.1 a+b two layers dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like 002390986 e6gxnv2 002992222 Q87RN4_nD1 Q87RN4 RF1_VIBPA VP0743 prfA Peptide chain release factor 1 743 6-105 f a.7 4006 4006.1 4006.1.1 alpha bundles Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain 002390987 e6gxnv3 002992223 Q87RN4_nD2 Q87RN4 RF1_VIBPA VP0743 prfA Peptide chain release factor 1 743 106-210 f a.11 304 304.116 304.116.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor 001891043 e5j30XY2 002992224 Q87RU1_nD1 Q87RU1 Q87RU1_VIBPA VP0685 Phosphatidylglycerophosphatase A 685 6-165 f a.7 514 514.1 514.1.1 alpha bundles YutG-like YutG-like YutG-like 000055627 e1y9iD1 002992225 Q87N02_nD1 Q87N02 Q87N02_VIBPA VP2074 2074 6-170 f a.6 635 635.1 635.1.1 alpha arrays YgfB-like YgfB-like YgfB-like 000003454 e1izmA1 002992226 Q87JS7_nD1 Q87JS7 Q87JS7_VIBPA VPA0171 Lactamase_B domain-containing protein 3250 1-253 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 001131969 e2yheA3 002992227 Q87G45_nD3 Q87G45 Q87G45_VIBPA VPA1472 4551 166-260 f a.17 2007 2007.1 2007.1.6 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Aminoacid dehydrogenase-like, N-terminal domain 002504198 e5ceeA2 002992228 Q87G45_nD1 Q87G45 Q87G45_VIBPA VPA1472 4551 6-75 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001688878 e5c8eG3 002992229 Q87G45_nD2 Q87G45 Q87G45_VIBPA VPA1472 4551 81-165 f a.6 4995 4995.1 4995.1.1 alpha arrays Methionine synthase domain-like Methionine synthase domain-like Methionine synthase domain-like 001688882 e5c8fA2 002992230 Q87QA7_nD1 Q87QA7 Q87QA7_VIBPA VP1243 OMP_b-brl domain-containing protein 1243 26-180 f a.1 5084 5084.2 5084.2.1 beta barrels Outer membrane meander beta-barrels OMPT-like OMPT-like 000000883 e1i78A1 002992231 Q87PW4_nD1 Q87PW4 Q87PW4_VIBPA VP1386 Big_6 domain-containing protein 1386 16-235,256-300 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001397034 e2zyrA1 002992232 Q87PW4_nD2 Q87PW4 Q87PW4_VIBPA VP1386 Big_6 domain-containing protein 1386 236-255,301-435 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002413274 e6efyA3 002992233 Q87R32_nD1 Q87R32 Q87R32_VIBPA VP0966 YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster 966 21-125 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000140125 e3o0lA1 002992234 Q87JE0_nD1 Q87JE0 Q87JE0_VIBPA VPA0313 SAM-dependent methyltransferase 3392 6-255 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002440810 e5yf0B1 002992235 Q87FI9_nD2 Q87FI9 Q87FI9_VIBPA VPA1690 RNA polymerase sigma factor 4769 91-160 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002589357 e5vt0L3 002992236 Q87FI9_nD1 Q87FI9 Q87FI9_VIBPA VPA1690 RNA polymerase sigma factor 4769 1-90 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 002492230 e6jcxF1 002992237 Q87IW1_nD1 Q87IW1 Q87IW1_VIBPA VPA0495 3574 11-160 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002565054 e6p7rA1 002992238 Q87IW1_nD2 Q87IW1 Q87IW1_VIBPA VPA0495 3574 161-215 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001839954 e5chhA2 002992239 Q87IW1_nD3 Q87IW1 Q87IW1_VIBPA VPA0495 3574 216-265 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002565056 e6p7rA3 002992240 Q87RW1_nD2 Q87RW1 MLTF_VIBPA VP0665 mltF Membrane-bound lytic murein transglycosylase F 665 106-245 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002992241 Q87RW1_nD1 Q87RW1 MLTF_VIBPA VP0665 mltF Membrane-bound lytic murein transglycosylase F 665 31-120,246-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002992242 Q87RW1_nD3 Q87RW1 MLTF_VIBPA VP0665 mltF Membrane-bound lytic murein transglycosylase F 665 286-470 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001526271 e4p11A1 002992243 Q87PZ1_nD2 Q87PZ1 Q87PZ1_VIBPA VP1359 HlyD_D23 domain-containing protein 1359 41-75,151-185 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002992244 Q87PZ1_nD1 Q87PZ1 Q87PZ1_VIBPA VP1359 HlyD_D23 domain-containing protein 1359 1-30 f a.19 6002 6002.1 6002.1.1 few secondary structure elements Protein P16 Protein P16 Protein P16 000185973 e1w8xP1 002992245 Q87PZ1_nD4 Q87PZ1 Q87PZ1_VIBPA VP1359 HlyD_D23 domain-containing protein 1359 186-285 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001313622 e4tkoB1 002992246 Q87PZ1_nD3 Q87PZ1 Q87PZ1_VIBPA VP1359 HlyD_D23 domain-containing protein 1359 76-150 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002576339 e6qpqC1 002992247 Q87JU5_nD1 Q87JU5 Q87JU5_VIBPA VPA0153 3232 11-180 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002992248 Q87HM0_nD4 Q87HM0 Q87HM0_VIBPA VPA0943 4022 56-70,216-290 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002992249 Q87HM0_nD3 Q87HM0 Q87HM0_VIBPA VPA0943 4022 106-180 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002576339 e6qpqC1 002992250 Q87HM0_nD1 Q87HM0 Q87HM0_VIBPA VPA0943 4022 6-30 f a.1 1 1.1 1.1.16 beta barrels cradle loop barrel RIFT-related Mammalian cell entry (MCE) domain 002702525 e7d06K1 002992251 Q87HM0_nD5 Q87HM0 Q87HM0_VIBPA VPA0943 4022 46-55,291-350 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001145750 e3lnnA1 002992252 Q87HM0_nD2 Q87HM0 Q87HM0_VIBPA VPA0943 4022 71-105,181-215 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001160273 e2v4dE8 002992253 Q87JX4_nD1 Q87JX4 Q87JX4_VIBPA VPA0124 3203 1-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000149729 e4e0aA1 002992254 Q87T42_nD1 Q87T42 Q87T42_VIBPA VP0228 228 26-400 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002992255 Q87MV1_nD2 Q87MV1 Q87MV1_VIBPA VP2130 Hydrolase 2130 241-600 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 002652982 e6vatE1 002992256 Q87MV1_nD1 Q87MV1 Q87MV1_VIBPA VP2130 Hydrolase 2130 11-210 f a.7 1151 1151.1 1151.1.1 alpha bundles Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A 002036575 e5fgnA1 002992257 Q87IJ9_nD1 Q87IJ9 RNB_VIBPA VPA0607 rnb Exoribonuclease 2 3686 6-80 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000024059 e2ix1A2 002992258 Q87IJ9_nD2 Q87IJ9 RNB_VIBPA VPA0607 rnb Exoribonuclease 2 3686 81-175 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000024054 e2id0C1 002992259 Q87IJ9_nD4 Q87IJ9 RNB_VIBPA VPA0607 rnb Exoribonuclease 2 3686 561-650 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000024063 e2id0C3 002992260 Q87IJ9_nD3 Q87IJ9 RNB_VIBPA VPA0607 rnb Exoribonuclease 2 3686 176-560 f a.1 2 2.9 2.9.1 beta barrels OB-fold RNB domain-like RNB domain-like 000025020 e2ix1A4 002992261 Q87L38_nD2 Q87L38 Q87L38_VIBPA VP2778 Peptidyl-prolyl cis-trans isomerase 2777 116-255 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000006488 e1jvwA1 002992262 Q87L38_nD1 Q87L38 Q87L38_VIBPA VP2778 Peptidyl-prolyl cis-trans isomerase 2777 51-115 f a.8 3405 3405.1 3405.1.1 alpha duplicates or obligate multimers FkpA dimerization domain-like FkpA dimerization domain-like FkpA dimerization domain-like 000224248 e1q6hA1 002992263 Q87I13_nD1 Q87I13 Q87I13_VIBPA VPA0793 DNA-directed DNA polymerase 3872 11-214 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000137783 e3hl8A1 002992264 P74956_nD3 P74956 LON_VIBPA VP0919 lon Lon protease 919 591-695 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001788834 e4yplB1 002992265 P74956_nD4 P74956 LON_VIBPA VP0919 lon Lon protease 919 696-780 f a.17 3010 3010.1 3010.1.1 a/b three-layered sandwiches C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains 001406586 e3wu4E1 002992266 P74956_nD1 P74956 LON_VIBPA VP0919 lon Lon protease 919 6-490 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 002733557 e7nglE2 002992267 P74956_nD2 P74956 LON_VIBPA VP0919 lon Lon protease 919 491-585 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002476754 e6on2B4 002992268 Q87H08_nD1 Q87H08 Q87H08_VIBPA VPA1157 4236 1-175 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009849 e1efvA2 002992269 Q87H08_nD2 Q87H08 Q87H08_VIBPA VPA1157 4236 176-308 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 000099203 e1efvA1 002992270 Q87RX6_nD1 Q87RX6 NADK_VIBPA VP0650 nadK NAD kinase 650 1-125,271-294 f a.17 2007 2007.1 2007.1.4 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain 001159444 e3afoA4 002992271 Q87RX6_nD2 Q87RX6 NADK_VIBPA VP0650 nadK NAD kinase 650 126-270 f a.3 4004 4004.1 4004.1.1 beta sandwiches NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like 002724167 e7mh7A1 002992272 Q87S40_nD1 Q87S40 Q87S40_VIBPA VP0584 Isocitrate lyase 584 6-435 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002674030 e6xppD1 002992273 Q87TL7_nD2 Q87TL7 Q87TL7_VIBPA VP0051 SPOR domain-containing protein 52 236-334 f a.14 209 209.1 209.1.1 a+b complex topology C-type lectin-like C-type lectin-like C-type lectin-like 002066820 e5n40A3 002992274 Q87TL7_nD1 Q87TL7 Q87TL7_VIBPA VP0051 SPOR domain-containing protein 52 41-145 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 000157953 e1x60A1 002992275 Q87P14_nD1 Q87P14 Q87P14_VIBPA VP1704 1704 11-185 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001140904 e4lrxC1 002992276 Q87P14_nD2 Q87P14 Q87P14_VIBPA VP1704 1704 186-260 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001812808 e2ykhB1 002992277 Q87P14_nD5 Q87P14 Q87P14_VIBPA VP1704 1704 541-585 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002992278 Q87P14_nD3 Q87P14 Q87P14_VIBPA VP1704 1704 266-450 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002598028 e6lufB2 002992279 Q87P14_nD4 Q87P14 Q87P14_VIBPA VP1704 1704 451-540 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002060239 e5m7oA3 002992280 Q87QL7_nD1 Q87QL7 Q87QL7_VIBPA VP1132 gsk Guanosine-inosine kinase 1132 1-430 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 002816095 e6vwpD1 002992281 Q87MS2_nD3 Q87MS2 Q87MS2_VIBPA VP2159 2159 221-320 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002992282 Q87MS2_nD4 Q87MS2 Q87MS2_VIBPA VP2159 2159 321-345 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002992283 Q87MS2_nD2 Q87MS2 Q87MS2_VIBPA VP2159 2159 31-220 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001613274 e3by9A1 002992284 Q87MS2_nD5 Q87MS2 Q87MS2_VIBPA VP2159 2159 346-405 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002992285 Q87MS2_nD6 Q87MS2 Q87MS2_VIBPA VP2159 2159 406-670 f 002992286 Q87MS2_nD1 Q87MS2 Q87MS2_VIBPA VP2159 2159 1-30 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002596952 e6py3B2 002992287 Q87TB2_nD1 Q87TB2 Q87TB2_VIBPA VP0158 trmH tRNA (guanosine(18)-2'-O)-methyltransferase 158 1-225 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 000010981 e1v2xA1 002992288 Q87PJ7_nD1 Q87PJ7 Q87PJ7_VIBPA VP1504 1505 1-525 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002814626 e7msmx2 002992289 Q87FF7_nD1 Q87FF7 Q87FF7_VIBPA VPA1722 RRM domain-containing protein 4801 1-79 f a.11 304 304.9 304.9.1 a+b two layers Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD 002641051 e6y53o2 002992290 Q87L91_nD4 Q87L91 CYSI_VIBPA VP2721 cysI Sulfite reductase [NADPH] hemoprotein beta-component 2720 431-578 f a.12 296 296.1 296.1.1 a+b three layers Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 001228036 e4g39A7 002992291 Q87L91_nD3 Q87L91 CYSI_VIBPA VP2721 cysI Sulfite reductase [NADPH] hemoprotein beta-component 2720 351-430 f a.11 304 304.37 304.37.1 a+b two layers Alpha-beta plaits Sulfite reductase, domains 1 and 3 Sulfite reductase, domains 1 and 3 000064799 e2gepA2 002992292 Q87L91_nD2 Q87L91 CYSI_VIBPA VP2721 cysI Sulfite reductase [NADPH] hemoprotein beta-component 2720 156-350 f a.12 296 296.1 296.1.1 a+b three layers Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 000079002 e2gepA3 002992293 Q87L91_nD1 Q87L91 CYSI_VIBPA VP2721 cysI Sulfite reductase [NADPH] hemoprotein beta-component 2720 11-155 f a.11 304 304.37 304.37.1 a+b two layers Alpha-beta plaits Sulfite reductase, domains 1 and 3 Sulfite reductase, domains 1 and 3 001821507 e5h92B1 002992294 Q87H41_nD1 Q87H41 Q87H41_VIBPA VPA1124 4203 1-125 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 000360918 e3gpvB1 002992295 Q87H68_nD1 Q87H68 Q87H68_VIBPA VPA1097 Fatty acid hydroxylase domain-containing protein 4176 21-270 f a.10 3978 3978.1 3978.1.1 alpha complex topology Integral membrane Acyl-CoA desaturase Integral membrane Acyl-CoA desaturase Integral membrane Acyl-CoA desaturase 001676532 e4zr1B1 002992296 Q87KE3_nD1 Q87KE3 HEM6_VIBPA VP3034 hemF Oxygen-dependent coproporphyrinogen-III oxidase 3033 6-70,91-305 f a.12 867 867.1 867.1.1 a+b three layers Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase Coproporphyrinogen III oxidase 001716084 e5eo6A1 002992297 Q87II3_nD1 Q87II3 Q87II3_VIBPA VPA0623 3702 6-260 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000378107 e3kqfC1 002992298 Q87SS8_nD2 Q87SS8 LEU3_VIBPA VP0344 leuB 3-isopropylmalate dehydrogenase 344 106-265 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002599789 e1cnzA2 002992299 Q87SS8_nD1 Q87SS8 LEU3_VIBPA VP0344 leuB 3-isopropylmalate dehydrogenase 344 6-105,266-363 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002599788 e1cnzA1 002992300 Q87TA4_nD1 Q87TA4 Q87TA4_VIBPA VP0166 166 31-100 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001715951 e5cj0B2 002992301 Q87TA4_nD2 Q87TA4 Q87TA4_VIBPA VP0166 166 101-260 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 002774176 e6q0xD2 002992302 Q87TA4_nD3 Q87TA4 Q87TA4_VIBPA VP0166 166 261-450 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002992303 Q87H72_nD1 Q87H72 Q87H72_VIBPA VPA1093 Lipoprotein 4172 51-125 f a.6 3705 3705.1 3705.1.1 alpha arrays Bacterial chaperone lipoprotein (PulS_OutS) Bacterial chaperone lipoprotein (PulS_OutS) Bacterial chaperone lipoprotein (PulS_OutS) 001031090 e3solA1 002992304 Q87PR9_nD2 Q87PR9 Q87PR9_VIBPA VP1432 1432 321-575 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002448376 e6a6mA1 002992305 Q87PR9_nD1 Q87PR9 Q87PR9_VIBPA VP1432 1432 1-320 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002570825 e6v9zB1 002992306 Q87MZ0_nD1 Q87MZ0 Q87MZ0_VIBPA VP2086 2086 1-160 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 001907349 e5lkbA2 002992307 Q87MZ0_nD2 Q87MZ0 Q87MZ0_VIBPA VP2086 2086 161-310 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 001197081 e4g0kA6 002992308 Q87J07_nD3 Q87J07 Q87J07_VIBPA VPA0448 DUF4340 domain-containing protein 3527 146-225 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002774949 e7arlE2 002992309 Q87J07_nD1 Q87J07 Q87J07_VIBPA VPA0448 DUF4340 domain-containing protein 3527 21-100 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002992310 Q87J07_nD2 Q87J07 Q87J07_VIBPA VPA0448 DUF4340 domain-containing protein 3527 101-130,231-244 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 000004025 e1wa8A1 002992311 Q87QI7_nD3 Q87QI7 TORA_VIBPA VP1162 torA Trimethylamine-N-oxide reductase 1162 661-815 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 000020850 e1tmoA1 002992312 Q87QI7_nD2 Q87QI7 TORA_VIBPA VP1162 torA Trimethylamine-N-oxide reductase 1162 36-180,406-660 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001685573 e2e7zA5 002992313 Q87QI7_nD1 Q87QI7 TORA_VIBPA VP1162 torA Trimethylamine-N-oxide reductase 1162 181-400 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001686588 e1tmoA3 002992314 Q87PD1_nD1 Q87PD1 Q87PD1_VIBPA VP1586 1586 1-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002716468 e6xgtD2 002992315 Q87MT2_nD1 Q87MT2 Q87MT2_VIBPA VP2149 topB DNA topoisomerase 3 2149 1-155 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 000009925 e1i7dA4 002992316 Q87MT2_nD2 Q87MT2 Q87MT2_VIBPA VP2149 topB DNA topoisomerase 3 2149 221-290,421-490 f a.1 264 264.2 264.2.1 beta barrels LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain 000000280 e1i7dA1 002992317 Q87MT2_nD4 Q87MT2 Q87MT2_VIBPA VP2149 topB DNA topoisomerase 3 2149 156-215,491-620 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000317634 e2o5cA2 002992318 Q87MT2_nD3 Q87MT2 Q87MT2_VIBPA VP2149 topB DNA topoisomerase 3 2149 291-420 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002753 e1i7dA3 002992319 Q87PG5_nD1 Q87PG5 Q87PG5_VIBPA VP1537 DsbD_2 domain-containing protein 1537 1-220 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002992320 Q87PZ9_nD1 Q87PZ9 Q87PZ9_VIBPA VP1351 2-keto-4-pentenoate hydratase 1351 1-340 f a.3 11 11.9 11.9.1 beta sandwiches Immunoglobulin-like beta-sandwich FAH FAH 001549034 e3lzkC2 002992321 Q87KR6_nD2 Q87KR6 Q87KR6_VIBPA VP2910 Tyr recombinase domain-containing protein 2909 166-320 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 002428100 e6gyuE2 002992322 Q87KR6_nD1 Q87KR6 Q87KR6_VIBPA VP2910 Tyr recombinase domain-containing protein 2909 6-165 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002992323 Q87KR6_nD3 Q87KR6 Q87KR6_VIBPA VP2910 Tyr recombinase domain-containing protein 2909 321-390 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 001165552 e3m4aA6 002992324 Q87FU5_nD2 Q87FU5 Q87FU5_VIBPA VPA1583 4662 91-165 f a.7 1203 1203.1 1203.1.1 alpha bundles Shroom domain 2 Shroom domain 2 Drosophila SD2 002387763 e3thfA1 002992325 Q87FU5_nD1 Q87FU5 Q87FU5_VIBPA VPA1583 4662 6-40 f a.21 5014 5014.1 5014.1.1 extended segments iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor 001291701 e4ogqD1 002992326 Q87FU5_nD4 Q87FU5 Q87FU5_VIBPA VPA1583 4662 356-380 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001788159 e5dqqA2 002992327 Q87FU5_nD3 Q87FU5 Q87FU5_VIBPA VPA1583 4662 41-90,166-355 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002770734 e7eebD1 002992328 Q79YW2_nD3 Q79YW2 Q79YW2_VIBPA VP2246 2246 361-439 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 002450278 e6njpD3 002992329 Q79YW2_nD2 Q79YW2 Q79YW2_VIBPA VP2246 2246 91-360 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002591325 e6rd9X1 002992330 Q79YW2_nD1 Q79YW2 Q79YW2_VIBPA VP2246 2246 21-90 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001790386 e5b0oB2 002992331 Q87PD4_nD1 Q87PD4 Q87PD4_VIBPA VP1580 Phasin_2 domain-containing protein 1580 6-100 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002625009 e6pajB2 002992332 Q87R98_nD2 Q87R98 Q87R98_VIBPA VP0899 899 96-360 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001758617 e3dp7B2 002992333 Q87R98_nD1 Q87R98 Q87R98_VIBPA VP0899 899 6-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002516249 e6ix5B2 002992334 Q87R92_nD1 Q87R92 Q87R92_VIBPA VP0905 905 16-355 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001881646 e4j7cJ3 002992335 Q87R92_nD2 Q87R92 Q87R92_VIBPA VP0905 905 356-450 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 000410581 e3pjzB3 002992336 Q87QK4_nD2 Q87QK4 Y1145_VIBPA VP1145 UPF0225 protein VP1145 1145 26-130 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 001628686 e2jq5A1 002992337 Q87QK4_nD1 Q87QK4 Y1145_VIBPA VP1145 UPF0225 protein VP1145 1145 1-25 f a.19 4236 4236.1 4236.1.1 few secondary structure elements Sec-C motif Sec-C motif Sec-C motif 001628687 e2jq5A2 002992338 Q87TH4_nD1 Q87TH4 UBIE_VIBPA VP0095 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE 95 16-259 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001322631 e4obxC1 002992339 Q79YX0_nD2 Q79YX0 Q79YX0_VIBPA VP2236 flhB Flagellar biosynthetic protein FlhB 2236 16-65,91-115,141-220 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 000454311 e2xqtE1 002992340 Q79YX0_nD1 Q79YX0 Q79YX0_VIBPA VP2236 flhB Flagellar biosynthetic protein FlhB 2236 66-90 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002464324 e6mitI1 002992341 Q79YX0_nD3 Q79YX0 Q79YX0_VIBPA VP2236 flhB Flagellar biosynthetic protein FlhB 2236 116-140 f a.6 1073 1073.1 1073.1.1 alpha arrays Mitochondrial calcium uniporter (MCU) Mitochondrial calcium uniporter (MCU) Mitochondrial calcium uniporter (MCU) 002398024 e6d80A2 002992342 Q79YX0_nD4 Q79YX0 Q79YX0_VIBPA VP2236 flhB Flagellar biosynthetic protein FlhB 2236 241-350 f a.3 4104 4104.1 4104.1.1 beta sandwiches EscU C-terminal domain-like EscU C-terminal domain-like EscU C-terminal domain-like 000145352 e3t7yA1 002992343 Q87NR0_nD1 Q87NR0 Q87NR0_VIBPA VP1808 TPR_REGION domain-containing protein 1808 1-220 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002096951 e5o01B1 002992344 Q87FC8_nD3 Q87FC8 Q87FC8_VIBPA VPA1751 4830 281-324 f a.15 3433 3433.1 3433.1.1 a+b duplicates or obligate multimers ParB dimerization domain ParB dimerization domain Plasmid-encoded ParB dimerization domain 001141926 e3kz5E1 002992345 Q87FC8_nD2 Q87FC8 Q87FC8_VIBPA VPA1751 4830 151-270 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001414245 e3mkwB1 002992346 Q87FC8_nD1 Q87FC8 Q87FC8_VIBPA VPA1751 4830 51-150 f a.14 876 876.1 876.1.1 a+b complex topology ParB/Sulfiredoxin ParB/Sulfiredoxin ParB/Sulfiredoxin 002710114 e7nfuB3 002992347 Q87KT0_nD3 Q87KT0 PUR9_VIBPA VP2896 purH Bifunctional purine biosynthesis protein PurH 2895 396-530 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 001155504 e1g8mB3 002992348 Q87KT0_nD1 Q87KT0 PUR9_VIBPA VP2896 purH Bifunctional purine biosynthesis protein PurH 2895 6-195 f a.17 7543 7543.1 7543.1.1 a/b three-layered sandwiches Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase-like 001202137 e3zzmB3 002992349 Q87KT0_nD2 Q87KT0 PUR9_VIBPA VP2896 purH Bifunctional purine biosynthesis protein PurH 2895 216-395 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 001155545 e3zzmA5 002992350 Q87RM2_nD1 Q87RM2 Q87RM2_VIBPA VP0756 Porin 756 1-230 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002992351 Q87MU5_nD3 Q87MU5 Q87MU5_VIBPA VP2136 2136 266-320 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000002800 e1aihA2 002992352 Q87MU5_nD1 Q87MU5 Q87MU5_VIBPA VP2136 2136 11-110 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002992353 Q87MU5_nD2 Q87MU5 Q87MU5_VIBPA VP2136 2136 111-265 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 002419960 e6emyB2 002992354 Q87M21_nD1 Q87M21 Q87M21_VIBPA VP2437 Nucleoside permease 2437 1-75,96-425 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 002060801 e5l26B1 002992355 Q87HF7_nD3 Q87HF7 Q87HF7_VIBPA VPA1008 ATPase RavA stimulator ViaA 4087 181-230,316-470 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 000235688 e3txaA1 002992356 Q87HF7_nD2 Q87HF7 Q87HF7_VIBPA VPA1008 ATPase RavA stimulator ViaA 4087 256-295 f 002992357 Q87HF7_nD1 Q87HF7 Q87HF7_VIBPA VPA1008 ATPase RavA stimulator ViaA 4087 6-165 f a.7 159 159.1 159.1.2 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases MazG-related 001719256 e5cwcA1 002992358 Q87QU9_nD1 Q87QU9 Q87QU9_VIBPA VP1050 Methyl-accepting chemotaxis protein 1050 1-40,61-120 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002321117 e6gapA2 002992359 Q87ID4_nD1 Q87ID4 Q87ID4_VIBPA VPA0672 DNA helicase 3751 1-100 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 001148178 e4khaA2 002992360 Q87ID4_nD2 Q87ID4 Q87ID4_VIBPA VPA0672 DNA helicase 3751 101-165 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001413708 e2b1eA1 002992361 Q87ID4_nD3 Q87ID4 Q87ID4_VIBPA VPA0672 DNA helicase 3751 166-685 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001108541 e4c2tC1 002992362 Q87TK0_nD1 Q87TK0 Q87TK0_VIBPA VP0069 rlmJ Ribosomal RNA large subunit methyltransferase J 69 6-279 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002464383 e6qe0A1 002992363 Q87FT6_nD1 Q87FT6 Q87FT6_VIBPA VPA1592 HTH araC/xylS-type domain-containing protein 4671 6-155 f a.11 3012 3012.1 3012.1.1 a+b two layers Cof C2 cap domain Cof C2 cap domain Cof C2 cap domain 002076426 e5ue7B2 002992364 Q87FT6_nD2 Q87FT6 Q87FT6_VIBPA VPA1592 HTH araC/xylS-type domain-containing protein 4671 161-210 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000390062 e3mklB1 002992365 Q87FT6_nD5 Q87FT6 Q87FT6_VIBPA VPA1592 HTH araC/xylS-type domain-containing protein 4671 381-478 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002319278 e5ot1A3 002992366 Q87FT6_nD3 Q87FT6 Q87FT6_VIBPA VPA1592 HTH araC/xylS-type domain-containing protein 4671 211-260 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001762220 e3w6vA1 002992367 Q87FT6_nD4 Q87FT6 Q87FT6_VIBPA VPA1592 HTH araC/xylS-type domain-containing protein 4671 261-375 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001291147 e2m83A1 002992368 Q87SY4_nD2 Q87SY4 Q87SY4_VIBPA VP0288 288 216-375 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002992369 Q87SY4_nD1 Q87SY4 Q87SY4_VIBPA VP0288 288 6-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002992370 Q87SY4_nD3 Q87SY4 Q87SY4_VIBPA VP0288 288 376-459 f a.11 304 304.9 304.9.1 a+b two layers Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD 002769951 e7bbbA2 002992371 Q87Q63_nD1 Q87Q63 Q87Q63_VIBPA VP1287 1287 26-260 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 000166902 e3bk5A1 002992372 Q87Q50_nD1 Q87Q50 Y1300_VIBPA VP1300 UPF0299 membrane protein VP1300 1300 6-120 f a.10 3236 3236.2 3236.2.1 alpha complex topology Cation-proton antiporter Sodium-dependent citrate symporter Sodium-dependent citrate symporter 001759948 e5a1sD1 002992373 Q87HC3_nD1 Q87HC3 Q87HC3_VIBPA VPA1042 Type VI secretion system lipoprotein TssJ 4121 26-150 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001031099 e3zhnA1 002992374 Q87R30_nD1 Q87R30 Q87R30_VIBPA VP0968 Thiamine kinase 968 11-285 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000195920 e2qg7A1 002992375 Q87LC1_nD1 Q87LC1 Q87LC1_VIBPA VP2691 mreB Cell shape-determining protein MreB 2690 6-140 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001296742 e4czfA2 002992376 Q87LC1_nD2 Q87LC1 Q87LC1_VIBPA VP2691 mreB Cell shape-determining protein MreB 2690 141-345 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001322768 e4czmB2 002992377 Q87KF7_nD1 Q87KF7 Q87KF7_VIBPA VP3020 3019 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002992378 Q87KF7_nD2 Q87KF7 Q87KF7_VIBPA VP3020 3019 91-180,281-310 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002992379 Q87KF7_nD3 Q87KF7 Q87KF7_VIBPA VP3020 3019 181-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002992380 Q87N21_nD1 Q87N21 Q87N21_VIBPA VP2055 Malonyl CoA-acyl carrier protein transacylase 2055 1-125,196-305 f a.17 2007 2007.1 2007.1.19 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like 002634669 e6smdB1 002992381 Q87N21_nD2 Q87N21 Q87N21_VIBPA VP2055 Malonyl CoA-acyl carrier protein transacylase 2055 126-195 f a.11 304 304.11 304.11.1 a+b two layers Alpha-beta plaits Probable ACP-binding domain of malonyl-CoA ACP transacylase Probable ACP-binding domain of malonyl-CoA ACP transacylase 000005276 e1mlaA1 002992382 Q87LN0_nD1 Q87LN0 Q87LN0_VIBPA VP2581 Signal peptide protein 2580 11-20,66-140 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 001890587 e5l04A4 002992383 Q87G36_nD1 Q87G36 Y5481_VIBPA VPA1481 UPF0397 protein VPA1481 4560 1-175 f a.7 604 604.12 604.12.1 alpha bundles Spectrin repeat-like MIT domain MIT domain 001297584 e4tkrB1 002992384 Q87H14_nD1 Q87H14 Q87H14_VIBPA VPA1151 4230 6-285 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 002817087 e7kypF1 002992385 Q87LX5_nD1 Q87LX5 Q87LX5_VIBPA VP2483 2483 6-265,286-330 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002992386 Q87QM8_nD1 Q87QM8 Q87QM8_VIBPA VP1121 Amino_oxidase domain-containing protein 1121 1-425 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002392641 e6f32A1 002992387 Q87J49_nD3 Q87J49 Q87J49_VIBPA VPA0404 3483 211-260 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002565056 e6p7rA3 002992388 Q87J49_nD1 Q87J49 Q87J49_VIBPA VPA0404 3483 16-150 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001294 e2arcA1 002992389 Q87J49_nD2 Q87J49 Q87J49_VIBPA VPA0404 3483 156-210 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670618 e6swiA1 002992390 Q87LJ0_nD1 Q87LJ0 Q87LJ0_VIBPA VP2622 Heme chaperone HemW 2621 1-310 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008987 e1oltA2 002992391 Q87LJ0_nD2 Q87LJ0 Q87LJ0_VIBPA VP2622 Heme chaperone HemW 2621 311-385 f a.6 101 101.19 101.19.1 alpha arrays HTH C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN 000002911 e1oltA1 002992392 Q87P59_nD3 Q87P59 Q87P59_VIBPA VP1659 Type III secretion cytoplasmic LcrG inhibitor 1659 386-430 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001556750 e4xguB2 002992393 Q87P59_nD4 Q87P59 Q87P59_VIBPA VP1659 Type III secretion cytoplasmic LcrG inhibitor 1659 431-605 f a.14 4055 4055.1 4055.1.1 a+b complex topology a+b domain in virulence-associated V antigen a+b domain in virulence-associated V antigen a+b domain in virulence-associated V antigen 000998566 e4jbuA1 002992394 Q87P59_nD1 Q87P59 Q87P59_VIBPA VP1659 Type III secretion cytoplasmic LcrG inhibitor 1659 26-130 f a.7 159 159.1 159.1.2 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases MazG-related 001719256 e5cwcA1 002992395 Q87P59_nD2 Q87P59 Q87P59_VIBPA VP1659 Type III secretion cytoplasmic LcrG inhibitor 1659 131-385 f 002992396 Q87LT2_nD1 Q87LT2 YACG_VIBPA VP2529 yacG DNA gyrase inhibitor YacG 2529 6-50 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 000008142 e1lv3A1 002992397 Q87M92_nD1 Q87M92 Q87M92_VIBPA VP2366 2366 6-135 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001018827 e4hh2D3 002992398 Q87M92_nD2 Q87M92 Q87M92_VIBPA VP2366 2366 141-300 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002992399 Q87J08_nD1 Q87J08 Q87J08_VIBPA VPA0447 PNPLA domain-containing protein 3526 16-549 f a.17 2007 2007.1 2007.1.19 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like 000010582 e1cjyA2 002992400 Q87HW1_nD1 Q87HW1 Q87HW1_VIBPA VPA0845 3924 6-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002992401 Q87HW1_nD2 Q87HW1 Q87HW1_VIBPA VPA0845 3924 211-390 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002992402 Q87JJ2_nD1 Q87JJ2 Q87JJ2_VIBPA VPA0257 3336 38-80 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002051565 e5joqA1 002992403 Q87J52_nD2 Q87J52 Q87J52_VIBPA VPA0401 DUF4382 domain-containing protein 3480 266-390 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002777308 e7czjB1 002992404 Q87J52_nD1 Q87J52 Q87J52_VIBPA VPA0401 DUF4382 domain-containing protein 3480 76-119,141-265 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000868770 e4jg5A1 002992405 Q87H43_nD1 Q87H43 Q87H43_VIBPA VPA1122 4201 1-250,471-490 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001903493 e1t90D2 002992406 Q87H43_nD2 Q87H43 Q87H43_VIBPA VPA1122 4201 251-470 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901625 e4i9bA1 002992407 Q87P60_nD1 Q87P60 Q87P60_VIBPA VP1658 1658 1-155 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001697349 e3wxxE1 002992408 Q87S17_nD2 Q87S17 Q87S17_VIBPA VP0607 HTH cro/C1-type domain-containing protein 607 236-315 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001822840 e2xhhA1 002992409 Q87S17_nD1 Q87S17 Q87S17_VIBPA VP0607 HTH cro/C1-type domain-containing protein 607 6-90 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000138067 e3fymA1 002992410 Q87MR2_nD1 Q87MR2 Y2169_VIBPA VP2169 UPF0260 protein VP2169 2169 17-45,78-95 f a.19 379 379.1 379.1.1 few secondary structure elements Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors 000008246 e1iw4A1 002992411 Q87QK7_nD1 Q87QK7 HIS4_VIBPA VP1142 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1142 1-240 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001681823 e5a5wA1 002992412 Q87KM8_nD1 Q87KM8 UBIC_VIBPA VP2949 ubiC Probable chorismate pyruvate-lyase 2948 6-175 f a.11 814 814.1 814.1.1 a+b two layers Chorismate lyase Chorismate lyase Chorismate lyase 000005947 e1tt8A1 002992413 Q87HL1_nD1 Q87HL1 Q87HL1_VIBPA VPA0952 Cadherin domain-containing protein 4031 16-170 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 002512625 e6fpyA2 002992414 Q87HL1_nD2 Q87HL1 Q87HL1_VIBPA VPA0952 Cadherin domain-containing protein 4031 176-280 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001406549 e2mw1A1 002992415 Q87HL1_nD3 Q87HL1 Q87HL1_VIBPA VPA0952 Cadherin domain-containing protein 4031 281-405 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002771719 e7cymB2 002992416 Q87QG0_nD1 Q87QG0 HCP_VIBPA VP1189 hcp Hydroxylamine reductase 1189 1-25 f a.19 4017 4017.1 4017.1.1 few secondary structure elements Fe-binding domain in prismane-like proteins Fe-binding domain in prismane-like proteins Fe-binding domain in prismane-like proteins 000092160 e1e9vA3 002992417 Q87QG0_nD2 Q87QG0 HCP_VIBPA VP1189 hcp Hydroxylamine reductase 1189 26-135 f a.7 4044 4044.1 4044.1.1 alpha bundles Helical bundle domain in prismane-like proteins Helical bundle domain in prismane-like proteins Helical bundle domain in prismane-like proteins 000055363 e1e9vA1 002992418 Q87QG0_nD5 Q87QG0 HCP_VIBPA VP1189 hcp Hydroxylamine reductase 1189 371-553 f a.17 7586 7586.1 7586.1.1 a/b three-layered sandwiches Rossmann-like domain in prismane-like proteins Rossmann-like domain in prismane-like proteins Rossmann-like domain in prismane-like proteins 002756858 e7de4A5 002992419 Q87QG0_nD3 Q87QG0 HCP_VIBPA VP1189 hcp Hydroxylamine reductase 1189 136-230 f a.7 4044 4044.1 4044.1.1 alpha bundles Helical bundle domain in prismane-like proteins Helical bundle domain in prismane-like proteins Helical bundle domain in prismane-like proteins 002756856 e7de4A3 002992420 Q87QG0_nD4 Q87QG0 HCP_VIBPA VP1189 hcp Hydroxylamine reductase 1189 231-370 f a.17 7586 7586.1 7586.1.1 a/b three-layered sandwiches Rossmann-like domain in prismane-like proteins Rossmann-like domain in prismane-like proteins Rossmann-like domain in prismane-like proteins 002756854 e7de4A1 002992421 Q87KQ1_nD2 Q87KQ1 RL1_VIBPA VP2925 rplA 50S ribosomal protein L1 2924 6-65,156-230 f a.11 898 898.1 898.1.1 a+b two layers a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 000348879 e2vplA1 002992422 Q87KQ1_nD1 Q87KQ1 RL1_VIBPA VP2925 rplA 50S ribosomal protein L1 2924 66-155 f a.17 2007 2007.25 2007.25.1 a/b three-layered sandwiches Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1 001434570 e4v61BD2 002992423 Q87SZ6_nD1 Q87SZ6 RS5_VIBPA VP0274 rpsE 30S ribosomal protein S5 274 1-75 f a.11 330 330.1 330.1.1 a+b two layers dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like 002083815 e5x8pe1 002992424 Q87SZ6_nD2 Q87SZ6 RS5_VIBPA VP0274 rpsE 30S ribosomal protein S5 274 81-165 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002097491 e5o5jE2 002992425 Q87SL5_nD1 Q87SL5 TSAD_VIBPA VP0408 tsaD tRNA N6-adenosine threonylcarbamoyltransferase 408 1-125 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001188004 e2ivnA1 002992426 Q87SL5_nD2 Q87SL5 TSAD_VIBPA VP0408 tsaD tRNA N6-adenosine threonylcarbamoyltransferase 408 126-335 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001188062 e3zeuE2 002992427 Q87FF2_nD3 Q87FF2 Q87FF2_VIBPA VPA1727 4806 211-270 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002992428 Q87FF2_nD2 Q87FF2 Q87FF2_VIBPA VPA1727 4806 156-210 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002992429 Q87FF2_nD1 Q87FF2 Q87FF2_VIBPA VPA1727 4806 11-155 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001294 e2arcA1 002992430 Q87H07_nD3 Q87H07 Q87H07_VIBPA VPA1158 4237 541-670 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 001492341 e4wd1A1 002992431 Q87H07_nD2 Q87H07 Q87H07_VIBPA VPA1158 4237 281-540 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002554269 e6mfzA4 002992432 Q87H07_nD1 Q87H07 Q87H07_VIBPA VPA1158 4237 6-300 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 002148238 e5u29C3 002992433 Q87HU6_nD1 Q87HU6 Q87HU6_VIBPA VPA0860 3939 26-413 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 000420253 e3pgsA1 002992434 Q87IC7_nD1 Q87IC7 Q87IC7_VIBPA VPA0679 3758 26-490 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 000010248 e1p49A1 002992435 Q87JZ9_nD1 Q87JZ9 Q87JZ9_VIBPA VPA0099 Transcriptional antiterminator 3178 6-80 f a.1 4 4.7 4.7.1 beta barrels SH3 RNase P subunit p29 RNase P subunit p29 002560759 e6jieA1 002992436 Q87JN8_nD1 Q87JN8 Q87JN8_VIBPA VPA0210 Nucleic-acid-binding protein containing a Zn-ribbon domain 3289 6-75 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002678858 e6zu5LOO1 002992437 Q87L04_nD2 Q87L04 Q87L04_VIBPA VP2820 N-acetylmuramoyl-L-alanine amidase 2819 156-405 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001307481 e4binA1 002992438 Q87L04_nD5 Q87L04 Q87L04_VIBPA VP2820 N-acetylmuramoyl-L-alanine amidase 2819 526-570 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002124918 e5jceB2 002992439 Q87L04_nD1 Q87L04 Q87L04_VIBPA VP2820 N-acetylmuramoyl-L-alanine amidase 2819 26-145 f a.3 319 319.3 319.3.1 beta sandwiches HSP20-like B2 domain of PilQ B2 domain of PilQ 001307482 e4binA2 002992440 Q87L04_nD3 Q87L04 Q87L04_VIBPA VP2820 N-acetylmuramoyl-L-alanine amidase 2819 406-470 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 001296954 e2mkxA1 002992441 Q87L04_nD4 Q87L04 Q87L04_VIBPA VP2820 N-acetylmuramoyl-L-alanine amidase 2819 471-520 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002124917 e5jceB1 002992442 Q87T51_nD1 Q87T51 Q87T51_VIBPA VP0219 OMP_b-brl domain-containing protein 219 41-188 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000169832 e2k0lA1 002992443 Q87RZ6_nD1 Q87RZ6 Q87RZ6_VIBPA VP0628 Amidohydro_3 domain-containing protein 628 36-100,551-565 f a.3 65 65.1 65.1.1 beta sandwiches Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 001608990 e4dykA1 002992444 Q87RZ6_nD2 Q87RZ6 Q87RZ6_VIBPA VP0628 Amidohydro_3 domain-containing protein 628 101-580 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001813977 e3ighX1 002992445 Q87HU2_nD2 Q87HU2 Q87HU2_VIBPA VPA0864 3943 151-250 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002037112 e5u4oA2 002992446 Q87HU2_nD1 Q87HU2 Q87HU2_VIBPA VPA0864 3943 6-110 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000177170 e3nqoA1 002992447 Q87HU2_nD3 Q87HU2 Q87HU2_VIBPA VPA0864 3943 121-150,251-330,531-560 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001558839 e4tozB2 002992448 Q87HU2_nD4 Q87HU2 Q87HU2_VIBPA VPA0864 3943 331-530 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523987 e4oerB4 002992449 Q87KJ5_nD1 Q87KJ5 Q87KJ5_VIBPA VP2982 DUF484 family protein 2981 46-225 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000347579 e3e98B1 002992450 Q87KN4_nD1 Q87KN4 Q87KN4_VIBPA VP2943 Multidrug resistance protein NorM 2942 6-230 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002473003 e6nc9A2 002992451 Q87KN4_nD2 Q87KN4 Q87KN4_VIBPA VP2943 Multidrug resistance protein NorM 2942 246-445 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002992452 Q87RX3_nD1 Q87RX3 DNAK_VIBPA VP0653 dnaK Chaperone protein DnaK 653 1-180 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001186440 e4jn4B5 002992453 Q87RX3_nD2 Q87RX3 DNAK_VIBPA VP0653 dnaK Chaperone protein DnaK 653 181-385 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002779420 e7krtB2 002992454 Q87RX3_nD4 Q87RX3 DNAK_VIBPA VP0653 dnaK Chaperone protein DnaK 653 526-610 f a.7 632 632.7 632.7.1 alpha bundles immunoglobulin/albumin-binding domain-like Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 001184276 e2qxlA12 002992455 Q87RX3_nD3 Q87RX3 DNAK_VIBPA VP0653 dnaK Chaperone protein DnaK 653 386-505 f a.3 511 511.1 511.1.1 beta sandwiches Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain 001919146 e5tkyA2 002992456 Q87MF3_nD1 Q87MF3 ACCA_VIBPA VP2302 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2302 6-315 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000162763 e2f9iA1 002992457 Q87M17_nD1 Q87M17 Q87M17_VIBPA VP2441 rimI [Ribosomal protein S18]-alanine N-acetyltransferase 2441 1-150 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001821692 e5isvA1 002992458 Q87T83_nD1 Q87T83 Q87T83_VIBPA VP0187 187 11-190 f a.7 1151 1151.1 1151.1.1 alpha bundles Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A 002036575 e5fgnA1 002992459 Q87T83_nD2 Q87T83 Q87T83_VIBPA VP0187 187 191-505 f a.17 7515 7515.1 7515.1.1 a/b three-layered sandwiches Alkaline phosphatase-like Alkaline phosphatase-like Alkaline phosphatase-like 002163790 e6fnyA1 002992460 Q79YW8_nD1 Q79YW8 Q79YW8_VIBPA VP2238 fliQ Flagellar biosynthetic protein FliQ 2238 6-89 f a.21 5043 5043.1 5043.1.1 extended segments Sensor proteins transmembrane domains Htr2 transmembrane domain-like Htr2 transmembrane domain-like 002028283 e5jjeB1 002992461 Q87MA8_nD1 Q87MA8 NQRC_VIBPA VP2349 nqrC Na(+)-translocating NADH-quinone reductase subunit C 2349 11-260 f a.11 3518 3518.1 3518.1.1 a+b two layers putative RnfG subunit of electron transport complex putative RnfG subunit of electron transport complex putative RnfG subunit of electron transport complex 001414916 e4p6vC1 002992462 Q87N54_nD1 Q87N54 Q87N54_VIBPA VP2021 TVP38/TMEM64 family membrane protein 2021 36-180 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 000869562 e4huqS1 002992463 Q87N54_nD2 Q87N54 Q87N54_VIBPA VP2021 TVP38/TMEM64 family membrane protein 2021 181-205 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 000416667 e3qnqC1 002992464 Q87I04_nD1 Q87I04 GCSH_VIBPA VPA0802 gcvH Glycine cleavage system H protein 3881 6-125 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 000007558 e1hpcA1 002992465 Q87TA0_nD1 Q87TA0 Q87TA0_VIBPA VP0170 170 1-30,71-335 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002772273 e7mbzA1 002992466 Q87G97_nD2 Q87G97 Q87G97_VIBPA VPA1420 4499 176-510 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002992467 Q87G97_nD1 Q87G97 Q87G97_VIBPA VPA1420 4499 1-150 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 001111243 e4ky9A1 002992468 Q87G97_nD3 Q87G97 Q87G97_VIBPA VPA1420 4499 516-620 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 001558831 e4tn5A1 002992469 Q87SR3_nD2 Q87SR3 GLMS_VIBPA VP0359 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 359 246-610 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001114600 e3fj1D1 002992470 Q87SR3_nD1 Q87SR3 GLMS_VIBPA VP0359 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 359 1-245 f a.13 210 210.1 210.1.3 a+b four layers Ntn/PP2C Ntn Class II glutamine amidotransferases 001266722 e4amvC6 002992471 Q87HP7_nD1 Q87HP7 Y4916_VIBPA VPA0916 UPF0181 protein VPA0916 3995 6-45 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002644436 e6x84A2 002992472 Q87MH5_nD1 Q87MH5 Q87MH5_VIBPA VP2280 2280 1-185 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001298300 e4lafA1 002992473 Q87TE2_nD1 Q87TE2 Q87TE2_VIBPA VP0128 AsmA domain-containing protein 128 6-50 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 002131732 e3jc9Oa2 002992474 Q87TE2_nD2 Q87TE2 Q87TE2_VIBPA VP0128 AsmA domain-containing protein 128 51-250 f a.2 7026 7026.1 7026.1.1 beta meanders N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 002485672 e6cbcB1 002992475 Q87TE2_nD4 Q87TE2 Q87TE2_VIBPA VP0128 AsmA domain-containing protein 128 346-615 f a.1 5084 5084.8 5084.8.1 beta barrels Outer membrane meander beta-barrels Usher PapC translocation pore Usher PapC translocation pore 001312416 e4j3oD3 002992476 Q87TE2_nD3 Q87TE2 Q87TE2_VIBPA VP0128 AsmA domain-containing protein 128 251-345 f a.4 79 79.1 79.1.1 beta duplicates or obligate multimers Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain Phage tail fiber protein trimerization domain 002559748 e6orjA2 002992477 Q87N99_nD2 Q87N99 Q87N99_VIBPA VP1976 HTH-type transcriptional regulator MetR 1976 91-165,266-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002992478 Q87N99_nD1 Q87N99 Q87N99_VIBPA VP1976 HTH-type transcriptional regulator MetR 1976 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001841396 e5fo5A1 002992479 Q87N99_nD3 Q87N99 Q87N99_VIBPA VP1976 HTH-type transcriptional regulator MetR 1976 166-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002992480 Q87RS4_nD1 Q87RS4 Q87RS4_VIBPA VP0703 Zn-ribbon-containing protein 703 1-95 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000168933 e3e8oA1 002992481 Q87RS4_nD2 Q87RS4 Q87RS4_VIBPA VP0703 Zn-ribbon-containing protein 703 96-255 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 001545991 e2k5cA1 002992482 Q87LF1_nD1 Q87LF1 Q87LF1_VIBPA VP2661 Phospholipid-binding protein MlaC 2660 26-205 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 002061424 e5uwaA1 002992483 Q87G61_nD2 Q87G61 Q87G61_VIBPA VPA1456 Protein BatD 4535 126-265 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001282544 e1yewI3 002992484 Q87G61_nD1 Q87G61 Q87G61_VIBPA VPA1456 Protein BatD 4535 26-120 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001456 e1pbyA2 002992485 Q87G61_nD4 Q87G61 Q87G61_VIBPA VPA1456 Protein BatD 4535 461-535 f a.7 601 601.16 601.16.1 alpha bundles Four-helical up-and-down bundle FAT domain of focal adhesion kinase FAT domain of focal adhesion kinase 001721597 e4xekA1 002992486 Q87G61_nD3 Q87G61 Q87G61_VIBPA VPA1456 Protein BatD 4535 266-390 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001282544 e1yewI3 002992487 Q87PH5_nD1 Q87PH5 Q87PH5_VIBPA VP1527 1527 6-250 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701855 e7cadB1 002992488 Q87QL6_nD2 Q87QL6 Q87QL6_VIBPA VP1133 DNA-binding protein 1133 96-135 f a.19 560 560.1 560.1.1 few secondary structure elements H-NS histone-like proteins, C-terminal domain H-NS histone-like proteins, C-terminal domain H-NS histone-like proteins, C-terminal domain 000145623 e2levA1 002992489 Q87QL6_nD1 Q87QL6 Q87QL6_VIBPA VP1133 DNA-binding protein 1133 6-80 f a.8 559 559.1 559.1.1 alpha duplicates or obligate multimers H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain 001031076 e3nr7A1 002992490 Q87G29_nD1 Q87G29 Q87G29_VIBPA VPA1488 CHK domain-containing protein 4567 6-330 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000007106 e2pulA1 002992491 Q87HA2_nD1 Q87HA2 Q87HA2_VIBPA VPA1063 Glycos_trans_3N domain-containing protein 4142 1-70 f a.6 184 184.1 184.1.1 alpha arrays Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N 000312457 e2dsjB1 002992492 Q87HA2_nD2 Q87HA2 Q87HA2_VIBPA VPA1063 Glycos_trans_3N domain-containing protein 4142 71-315 f a.17 7544 7544.1 7544.1.1 a/b three-layered sandwiches Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 001514598 e4muoA2 002992493 Q87Q90_nD1 Q87Q90 Q87Q90_VIBPA VP1260 Phospholipase A1 1260 31-269 f a.1 5084 5084.4 5084.4.1 beta barrels Outer membrane meander beta-barrels Outer membrane phospholipase A (OMPLA) Outer membrane phospholipase A (OMPLA) 000028412 e1qd5A1 002992494 Q87TN0_nD3 Q87TN0 Q87TN0_VIBPA VP0039 HlyD_D23 domain-containing protein 39 56-65,201-275 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002992495 Q87TN0_nD4 Q87TN0 Q87TN0_VIBPA VP0039 HlyD_D23 domain-containing protein 39 41-55,276-355 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002992496 Q87TN0_nD1 Q87TN0 Q87TN0_VIBPA VP0039 HlyD_D23 domain-containing protein 39 66-105,161-200 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002992497 Q87TN0_nD2 Q87TN0 Q87TN0_VIBPA VP0039 HlyD_D23 domain-containing protein 39 106-160 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001509019 e4dk1B4 002992498 Q79YT7_nD2 Q79YT7 Q79YT7_VIBPA VPA1505 4584 171-255 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001162335 e4ay0B4 002992499 Q79YT7_nD1 Q79YT7 Q79YT7_VIBPA VPA1505 4584 31-170 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002329803 e6fjyC1 002992500 Q87RT4_nD1 Q87RT4 Q87RT4_VIBPA VP0693 Abhydrolase_11 domain-containing protein 693 1-205 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000137554 e3ksrA1 002992501 Q87L93_nD1 Q87L93 Q87L93_VIBPA VP2719 Transposase 2718 6-45 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002163544 e5uxxC1 002992502 Q87IN9_nD1 Q87IN9 Q87IN9_VIBPA VPA0567 Glyoxalase 3646 1-215 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000104200 e1oy1A1 002992503 Q87SJ4_nD1 Q87SJ4 Q87SJ4_VIBPA VP0429 Esterase YqiA 429 6-194 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002600564 e4fleA1 002992504 Q87S10_nD1 Q87S10 Q87S10_VIBPA VP0614 DNA ligase 614 1-30 f a.19 375 375.2 375.2.1 few secondary structure elements Rubredoxin-like YfgJ-like YfgJ-like 000008055 e2jneA1 002992505 Q87S10_nD2 Q87S10 Q87S10_VIBPA VP0614 DNA ligase 614 31-70 f a.19 375 375.2 375.2.1 few secondary structure elements Rubredoxin-like YfgJ-like YfgJ-like 000164932 e2jrpA1 002992506 Q87R66_nD1 Q87R66 Q87R66_VIBPA VP0932 menC o-succinylbenzoate synthase 932 1-100 f a.11 218 218.1 218.1.1 a+b two layers Enolase-N/ribosomal protein Enolase N-terminal domain-like Enolase N-terminal domain-like 000005836 e1r6wA1 002992507 Q87R66_nD2 Q87R66 Q87R66_VIBPA VP0932 menC o-succinylbenzoate synthase 932 101-329 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001261186 e3gc2A4 002992508 Q87QE4_nD2 Q87QE4 Q87QE4_VIBPA VP1205 1205 36-85 f a.6 592 592.2 592.2.1 alpha arrays PWI domain-like YugE-like YugE-like 000167309 e2jpsA1 002992509 Q87QE4_nD1 Q87QE4 Q87QE4_VIBPA VP1205 1205 6-35 f a.21 3864 3864.1 3864.1.1 extended segments Mitochondrial 54S ribosomal protein L28 Mitochondrial 54S ribosomal protein L28 Mitochondrial 54S ribosomal protein L28 002698193 e7a5kA1 002992510 Q87P92_nD1 Q87P92 Q87P92_VIBPA VP1626 Sulfurtransferase 1626 1-105 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000281323 e1yx3A1 002992511 Q87TN5_nD2 Q87TN5 Q87TN5_VIBPA VP0034 34 81-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002992512 Q87TN5_nD1 Q87TN5 Q87TN5_VIBPA VP0034 34 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002992513 Q87G40_nD1 Q87G40 Q87G40_VIBPA VPA1477 ATP-dependent transcriptional regulator 4556 6-494 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002492114 e6hc2G1 002992514 Q87GC6_nD1 Q87GC6 Q87GC6_VIBPA VPA1391 HTH cro/C1-type domain-containing protein 4470 6-68 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000160875 e2ewtA1 002992515 Q87JM2_nD1 Q87JM2 Q87JM2_VIBPA VPA0227 3306 36-120 f a.11 304 304.7 304.7.1 a+b two layers Alpha-beta plaits Protease propeptides/inhibitors Protease propeptides/inhibitors 002507085 e6mw4A2 002992516 Q87JM2_nD2 Q87JM2 Q87JM2_VIBPA VPA0227 3306 126-335,481-565 f a.17 2499 2499.1 2499.1.1 a/b three-layered sandwiches Subtilisin-like Subtilisin-like Subtilisin-like 001834153 e1v6cB2 002992517 Q87JM2_nD3 Q87JM2 Q87JM2_VIBPA VPA0227 3306 336-480 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 001834152 e1v6cB1 002992518 Q87JM2_nD4 Q87JM2 Q87JM2_VIBPA VPA0227 3306 566-675 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 000030680 e1r64A1 002992519 Q87LI2_nD1 Q87LI2 Q87LI2_VIBPA VP2630 Aldehyde dehydrogenase 2629 6-250,441-470 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001903260 e3r64A1 002992520 Q87LI2_nD2 Q87LI2 Q87LI2_VIBPA VP2630 Aldehyde dehydrogenase 2629 251-455 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001900931 e3ek1A1 002992521 Q87KC4_nD1 Q87KC4 Q87KC4_VIBPA VP3053 srkA Stress response kinase A 3052 6-335 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000007108 e1zylA1 002992522 Q87I98_nD1 Q87I98 Q87I98_VIBPA VPA0708 3787 1-180 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011070 e2cy2A1 002992523 Q87L70_nD1 Q87L70 Q87L70_VIBPA VP2742 Site-specific DNA-methyltransferase (adenine-specific) 2741 6-270 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001546634 e4rtqA1 002992524 Q87R49_nD1 Q87R49 Q87R49_VIBPA VP0949 949 6-110 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000071698 e1c8uB1 002992525 Q87R49_nD2 Q87R49 Q87R49_VIBPA VP0949 949 111-285 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000071699 e1c8uB2 002992526 Q87FM2_nD1 Q87FM2 Q87FM2_VIBPA VPA1657 4736 46-170 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 002534565 e6i96A2 002992527 Q87FM2_nD2 Q87FM2 Q87FM2_VIBPA VPA1657 4736 171-678 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002626021 e6v81A2 002992528 Q87MD7_nD1 Q87MD7 Q87MD7_VIBPA VP2319 map Methionine aminopeptidase 2319 6-290 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 002629454 e6k26B1 002992529 Q87IV2_nD1 Q87IV2 Q87IV2_VIBPA VPA0504 3583 1-244 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000101180 e1sq5D1 002992530 Q87P75_nD1 Q87P75 Q87P75_VIBPA VP1643 1643 1-160 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000303388 e2ft0A1 002992531 Q87T13_nD1 Q87T13 RL3_VIBPA VP0257 rplC 50S ribosomal protein L3 257 1-209 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002093031 e5o60D1 002992532 Q87MK1_nD3 Q87MK1 Q87MK1_VIBPA VP2234 Flagellar biosynthesis protein FlhF 2234 266-480 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001280729 e3synC3 002992533 Q87MK1_nD2 Q87MK1 Q87MK1_VIBPA VP2234 Flagellar biosynthesis protein FlhF 2234 181-265 f a.7 181 181.1 181.1.1 alpha bundles Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins 001230990 e2og2A6 002992534 Q87MK1_nD1 Q87MK1 Q87MK1_VIBPA VP2234 Flagellar biosynthesis protein FlhF 2234 1-30 f a.12 2485 2485.3 2485.3.1 a+b three layers Thioredoxin-like Major capsid protein gp5 Major capsid protein gp5 000011367 e2pk8A1 002992535 Q87IJ7_nD1 Q87IJ7 Q87IJ7_VIBPA VPA0609 Bifunctional diguanylate cyclase/phosphodiesterase 3688 1-90 f a.19 174 174.1 174.1.1 few secondary structure elements Tetraspanin transmembrane domain Tetraspanin transmembrane domain Tetraspanin transmembrane domain 002673302 e6wvgA2 002992536 Q87IJ7_nD2 Q87IJ7 Q87IJ7_VIBPA VPA0609 Bifunctional diguanylate cyclase/phosphodiesterase 3688 106-265 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002992537 Q87IJ7_nD3 Q87IJ7 Q87IJ7_VIBPA VPA0609 Bifunctional diguanylate cyclase/phosphodiesterase 3688 271-533 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002992538 Q87GU3_nD1 Q87GU3 Y5222_VIBPA VPA1222 UPF0213 protein VPA1222 4301 6-95 f a.12 821 821.1 821.1.1 a+b three layers GIY-YIG endonuclease GIY-YIG endonuclease GIY-YIG endonuclease 002528008 e6seiA1 002992539 Q87RQ3_nD1 Q87RQ3 Q87RQ3_VIBPA VP0724 rsfS Ribosomal silencing factor RsfS 724 1-105 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002619622 e6sj5B1 002992540 Q87GZ4_nD1 Q87GZ4 Q87GZ4_VIBPA VPA1171 4250 6-249 f a.17 2003 2003.1 2003.1.9 a/b three-layered sandwiches Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins 000009456 e1jw9B1 002992541 Q87TA5_nD1 Q87TA5 Q87TA5_VIBPA VP0165 165 1-170 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002992542 Q87QB8_nD2 Q87QB8 Y1232_VIBPA VP1232 Putative transport protein VP1232 1232 1-205,381-560 f a.10 3236 3236.2 3236.2.1 alpha complex topology Cation-proton antiporter Sodium-dependent citrate symporter Sodium-dependent citrate symporter 001759948 e5a1sD1 002992543 Q87QB8_nD1 Q87QB8 Y1232_VIBPA VP1232 Putative transport protein VP1232 1232 216-290 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 002547913 e6i8vA2 002992544 Q87QB8_nD3 Q87QB8 Y1232_VIBPA VP1232 Putative transport protein VP1232 1232 296-375 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 001824299 e4ys2A1 002992545 Q87KN5_nD2 Q87KN5 STHA_VIBPA VP2942 sthA Soluble pyridine nucleotide transhydrogenase 2941 151-270 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270544 e3iwaA4 002992546 Q87KN5_nD1 Q87KN5 STHA_VIBPA VP2942 sthA Soluble pyridine nucleotide transhydrogenase 2941 6-150,271-345 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002992547 Q87KN5_nD3 Q87KN5 STHA_VIBPA VP2942 sthA Soluble pyridine nucleotide transhydrogenase 2941 346-465 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 000076980 e1ebdA1 002992548 Q87NS9_nD1 Q87NS9 Q87NS9_VIBPA VP1789 CSD domain-containing protein 1789 6-75 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000141827 e3aqqA1 002992549 Q87HQ0_nD2 Q87HQ0 Q87HQ0_VIBPA VPA0912 3992 91-160,246-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002992550 Q87HQ0_nD1 Q87HQ0 Q87HQ0_VIBPA VPA0912 3992 6-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002992551 Q87HQ0_nD3 Q87HQ0 Q87HQ0_VIBPA VPA0912 3992 161-245 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001520964 e3i6vA2 002992552 Q87MY5_nD3 Q87MY5 Q87MY5_VIBPA VP2091 2091 306-530 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001019357 e1jetA4 002992553 Q87MY5_nD1 Q87MY5 Q87MY5_VIBPA VP2091 2091 91-205 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002573688 e6e4dA3 002992554 Q87MY5_nD2 Q87MY5 Q87MY5_VIBPA VP2091 2091 51-90,206-305,531-555 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001019356 e1jetA3 002992555 Q87TG9_nD1 Q87TG9 Q87TG9_VIBPA VP0100 tatC Sec-independent protein translocase protein TatC 100 16-240 f a.7 3563 3563.1 3563.1.1 alpha bundles Twin arginine protein translocation system component TatC Twin arginine protein translocation system component TatC Twin arginine protein translocation system component TatC 000259863 e4htsA1 002992556 Q87G94_nD3 Q87G94 Q87G94_VIBPA VPA1423 4502 231-275 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002992557 Q87G94_nD2 Q87G94 Q87G94_VIBPA VPA1423 4502 166-230 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670618 e6swiA1 002992558 Q87G94_nD1 Q87G94 Q87G94_VIBPA VPA1423 4502 1-165 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001297507 e4qglA1 002992559 Q87SH9_nD1 Q87SH9 Q87SH9_VIBPA VP0444 444 1-205 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 000147791 e4dejA1 002992560 Q87PS4_nD1 Q87PS4 Q87PS4_VIBPA VP1427 HD-GYP domain-containing protein 1427 6-155 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001271913 e4bwiB5 002992561 Q87PS4_nD2 Q87PS4 Q87PS4_VIBPA VP1427 HD-GYP domain-containing protein 1427 156-365 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 001503459 e4r8zA1 002992562 Q87MM8_nD2 Q87MM8 Q87MM8_VIBPA VP2203 prmB 50S ribosomal protein L3 glutamine methyltransferase 2203 96-305 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001141804 e2b3tA3 002992563 Q87MM8_nD1 Q87MM8 Q87MM8_VIBPA VP2203 prmB 50S ribosomal protein L3 glutamine methyltransferase 2203 6-95 f a.6 6056 6056.1 6056.1.1 alpha arrays SP1917-like SP1917-like SP1917-like 001141803 e2b3tA2 002992564 Q87FM5_nD1 Q87FM5 Q87FM5_VIBPA VPA1654 4733 16-345 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 001921594 e5b58A1 002992565 Q87LH5_nD1 Q87LH5 Q87LH5_VIBPA VP2637 2636 1-100 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 000105286 e1iibB1 002992566 Q87JW8_nD1 Q87JW8 THIE_VIBPA VPA0130 thiE Thiamine-phosphate synthase 3209 1-204 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008717 e2tpsA1 002992567 Q87JR0_nD2 Q87JR0 Q87JR0_VIBPA VPA0188 3267 121-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518774 e1us5A2 002992568 Q87JR0_nD1 Q87JR0 Q87JR0_VIBPA VPA0188 3267 26-120,261-330 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518775 e1us5A3 002992569 Q87TK9_nD1 Q87TK9 Q87TK9_VIBPA VP0060 Spermidine export protein MdtJ 60 6-105 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002673050 e6wk9B1 002992570 Q87N17_nD1 Q87N17 Q87N17_VIBPA VP2059 Large ribosomal RNA subunit accumulation protein YceD 2059 6-135 f a.11 4051 4051.1 4051.1.1 a+b two layers a+b domain in Capz a+b domain in Capz a+b domain in Capz 001504289 e4akrB1 002992571 Q9X9J3_nD1 Q9X9J3 FLGJ_VIBPA VP0784 flgJ Peptidoglycan hydrolase FlgJ 784 11-105 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 000136279 e3fx7A1 002992572 Q9X9J3_nD2 Q9X9J3 FLGJ_VIBPA VP0784 flgJ Peptidoglycan hydrolase FlgJ 784 156-308 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 000357230 e2zycA1 002992573 Q79YV0_nD1 Q79YV0 Q79YV0_VIBPA VPA0265 Flagellar basal-body rod protein FlgC 3344 1-80,101-144 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002734730 e7nvgV21 002992574 Q87J04_nD1 Q87J04 Q87J04_VIBPA VPA0451 Ati2 chaperone 3530 1-145 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 000394440 e3kxyG1 002992575 Q87QZ8_nD1 Q87QZ8 Q87QZ8_VIBPA VP1000 1000 11-240 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002992576 Q87T72_nD1 Q87T72 Q87T72_VIBPA VP0198 198 1-315 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001648154 e3bcxA1 002992577 Q87T72_nD2 Q87T72 Q87T72_VIBPA VP0198 198 316-385 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001549500 e4zasB2 002992578 Q87QW6_nD2 Q87QW6 Q87QW6_VIBPA VP1033 DUF218 domain-containing protein 1033 1-10,51-250 f a.17 2005 2005.2 2005.2.1 a/b three-layered sandwiches HUP domain-like YdcF YdcF 000223833 e3ca8A1 002992579 Q87QW6_nD1 Q87QW6 Q87QW6_VIBPA VP1033 DUF218 domain-containing protein 1033 11-50 f a.7 192 192.5 192.5.1 alpha bundles Long alpha-hairpin HR1 repeat HR1 repeat 001066049 e4k2oA2 002992580 Q87JV7_nD2 Q87JV7 Q87JV7_VIBPA VPA0141 3220 81-174 f a.6 616 616.1 616.1.1 alpha arrays S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain 000389974 e3m8aJ1 002992581 Q87JV7_nD1 Q87JV7 Q87JV7_VIBPA VPA0141 3220 6-80 f a.6 148 148.1 148.1.1 alpha arrays Histone-like Histone-related Histone 000148506 e3vh5W1 002992582 Q87R52_nD2 Q87R52 Q87R52_VIBPA VP0946 946 166-355 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002483186 e1kl7B2 002992583 Q87R52_nD1 Q87R52 Q87R52_VIBPA VP0946 946 6-160 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002483702 e1wdwH2 002992584 Q87GA8_nD1 Q87GA8 Q87GA8_VIBPA VPA1409 Ligase 4488 11-255,276-289,316-390 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002992585 Q87R42_nD2 Q87R42 Q87R42_VIBPA VP0956 NAD(P)/FAD-dependent oxidoreductase 956 86-285,481-539 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001786501 e3nlcA2 002992586 Q87R42_nD1 Q87R42 Q87R42_VIBPA VP0956 NAD(P)/FAD-dependent oxidoreductase 956 1-85 f a.11 304 304.9 304.9.1 a+b two layers Alpha-beta plaits RNA-binding domain, RBD RNA-binding domain, RBD 001786500 e3nlcA1 002992587 Q87R42_nD3 Q87R42 Q87R42_VIBPA VP0956 NAD(P)/FAD-dependent oxidoreductase 956 286-480 f a.11 244 244.1 244.1.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C 001786502 e3nlcA3 002992588 Q87HS3_nD3 Q87HS3 Q87HS3_VIBPA VPA0883 3962 166-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002992589 Q87HS3_nD2 Q87HS3 Q87HS3_VIBPA VPA0883 3962 86-165,266-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002723526 e6yizA1 002992590 Q87HS3_nD1 Q87HS3 Q87HS3_VIBPA VPA0883 3962 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002992591 Q87H46_nD1 Q87H46 Q87H46_VIBPA VPA1119 4198 6-360 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 002718865 e6ywx881 002992592 Q87NH3_nD3 Q87NH3 Q87NH3_VIBPA VP1896 1895 381-463 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001193652 e2z1yB3 002992593 Q87NH3_nD1 Q87NH3 Q87NH3_VIBPA VP1896 1895 1-65 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001525305 e4mgrA2 002992594 Q87NH3_nD2 Q87NH3 Q87NH3_VIBPA VP1896 1895 71-380 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001122247 e2zy4F1 002992595 Q87KV3_nD1 Q87KV3 Q87KV3_VIBPA VP2872 Transcriptional regulator 2871 6-120 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002413070 e6e9vB1 002992596 Q87FN4_nD1 Q87FN4 Q87FN4_VIBPA VPA1645 4724 6-115 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000140438 e2wskA2 002992597 Q87FN4_nD2 Q87FN4 Q87FN4_VIBPA VPA1645 4724 116-550 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001220944 e2vuyA8 002992598 Q87FN4_nD3 Q87FN4 Q87FN4_VIBPA VPA1645 4724 556-663 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 001220927 e2vr5A12 002992599 Q87NQ6_nD1 Q87NQ6 Q87NQ6_VIBPA VP1812 TIR domain-containing protein 1812 36-190 f a.17 2007 2007.9 2007.9.1 a/b three-layered sandwiches Flavodoxin-like Toll/Interleukin receptor TIR domain Toll/Interleukin receptor TIR domain 001684203 e4w8hA1 002992600 Q87NQ6_nD2 Q87NQ6 Q87NQ6_VIBPA VP1812 TIR domain-containing protein 1812 221-355 f a.11 241 241.2 241.2.1 a+b two layers Type III secretory system chaperone-like Frataxin-like Frataxin-like 000372870 e3iamH1 002992601 Q87SS4_nD1 Q87SS4 Q87SS4_VIBPA VP0348 acidPPc domain-containing protein 348 6-180 f a.7 180 180.1 180.1.1 alpha bundles Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase 001255625 e3bb0A3 002992602 Q87KG9_nD1 Q87KG9 Q87KG9_VIBPA VP3008 3007 6-300 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002992603 Q87LI3_nD3 Q87LI3 Q87LI3_VIBPA VP2629 2628 266-540 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002992604 Q87LI3_nD1 Q87LI3 Q87LI3_VIBPA VP2629 2628 6-205 f a.12 3488 3488.1 3488.1.1 a+b three layers Putative sensor histidine kinase domain Putative sensor histidine kinase domain Putative sensor histidine kinase domain 002048220 e5g4yA1 002992605 Q87LI3_nD2 Q87LI3 Q87LI3_VIBPA VP2629 2628 206-265 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002992606 Q87LD3_nD1 Q87LD3 RLUA_VIBPA VP2679 rluA Dual-specificity RNA pseudouridine synthase RluA 2678 6-238 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000162642 e2i82A1 002992607 Q87QA4_nD1 Q87QA4 Q87QA4_VIBPA VP1246 DUF945 domain-containing protein 1246 6-415 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001734925 e5dl7A1 002992608 Q87NW5_nD1 Q87NW5 Q87NW5_VIBPA VP1753 1753 26-115,241-300 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001547861 e3v83C2 002992609 Q87NW5_nD2 Q87NW5 Q87NW5_VIBPA VP1753 1753 116-240 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002992610 Q87T07_nD1 Q87T07 RS3_VIBPA VP0263 rpsC 30S ribosomal protein S3 263 6-105 f a.11 327 327.11 327.11.1 a+b two layers Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II) 002575872 e6v3ac1 002992611 Q87T07_nD2 Q87T07 RS3_VIBPA VP0263 rpsC 30S ribosomal protein S3 263 106-215 f a.11 230 230.2 230.2.1 a+b two layers T-fold Ribosomal protein S3-C Ribosomal protein S3-C 002826871 e7rygc1 002992612 Q87SM9_nD1 Q87SM9 Q87SM9_VIBPA VP0393 Zf-trcl domain-containing protein 393 1-90 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 001002459 e3goxA2 002992613 Q87IA9_nD1 Q87IA9 Q87IA9_VIBPA VPA0697 3776 26-325 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001144516 e4ovyA1 002992614 Q87G15_nD1 Q87G15 Q87G15_VIBPA VPA1502 4581 22-235 f a.2 62 62.1 62.1.1 beta meanders Carbonic anhydrase Carbonic anhydrase Carbonic anhydrase 001930884 e5hpjA1 002992615 Q87G87_nD2 Q87G87 Q87G87_VIBPA VPA1430 4509 136-230 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001881646 e4j7cJ3 002992616 Q87G87_nD1 Q87G87 Q87G87_VIBPA VPA1430 4509 16-135 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001881645 e4j7cJ2 002992617 Q87G87_nD3 Q87G87 Q87G87_VIBPA VPA1430 4509 231-355 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001881645 e4j7cJ2 002992618 Q87G87_nD4 Q87G87 Q87G87_VIBPA VPA1430 4509 356-450 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 000410580 e3pjzB2 002992619 Q87QT8_nD1 Q87QT8 Q87QT8_VIBPA VP1061 pal Peptidoglycan-associated protein 1061 56-174 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001285291 e4pwtC1 002992620 Q87PM1_nD1 Q87PM1 KT3K_VIBPA VP1481 Probable ketoamine kinase VP1481 1481 21-288 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 000173153 e3jr1A1 002992621 Q87RF1_nD1 Q87RF1 Q87RF1_VIBPA VP0846 Succinate dehydrogenase iron-sulfur subunit 846 1-105 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000370965 e2wdqJ2 002992622 Q87RF1_nD2 Q87RF1 Q87RF1_VIBPA VP0846 Succinate dehydrogenase iron-sulfur subunit 846 106-235 f a.6 187 187.1 187.1.1 alpha arrays alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin 000370964 e2wdqJ1 002992623 Q87QE9_nD1 Q87QE9 Q87QE9_VIBPA VP1200 Sulfurtransferase 1200 31-185 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 000153138 e3utnX2 002992624 Q87QE9_nD2 Q87QE9 Q87QE9_VIBPA VP1200 Sulfurtransferase 1200 186-320 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 000135507 e3hzuA2 002992625 Q87PX2_nD3 Q87PX2 Q87PX2_VIBPA VP1378 1378 331-403 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001549366 e4xq3G1 002992626 Q87PX2_nD1 Q87PX2 Q87PX2_VIBPA VP1378 1378 6-65 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 002512637 e5zx3D6 002992627 Q87PX2_nD2 Q87PX2 Q87PX2_VIBPA VP1378 1378 101-330 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000146383 e3tm8A1 002992628 Q87JX0_nD2 Q87JX0 Q87JX0_VIBPA VPA0128 trimethylamine-N-oxide reductase 3207 176-400 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002724076 e7l5iA2 002992629 Q87JX0_nD1 Q87JX0 Q87JX0_VIBPA VPA0128 trimethylamine-N-oxide reductase 3207 41-85 f a.11 1001 1001.1 1001.1.1 a+b two layers Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 002724075 e7l5iA1 002992630 Q87JX0_nD4 Q87JX0 Q87JX0_VIBPA VPA0128 trimethylamine-N-oxide reductase 3207 661-810 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002724077 e7l5iA3 002992631 Q87JX0_nD3 Q87JX0 Q87JX0_VIBPA VPA0128 trimethylamine-N-oxide reductase 3207 86-175,401-660 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001693256 e2vpwE3 002992632 Q87KH5_nD1 Q87KH5 RHLB_VIBPA VP3002 rhlB ATP-dependent RNA helicase RhlB 3001 6-230 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002992633 Q87KH5_nD2 Q87KH5 RHLB_VIBPA VP3002 rhlB ATP-dependent RNA helicase RhlB 3001 231-400 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002992634 Q87P35_nD1 Q87P35 Q87P35_VIBPA VP1683 Type III secretion system effector VopR 1683 11-110 f a.6 108 108.1 108.1.1 alpha arrays EF-hand EF-hand-related EF-hand 000003177 e1fi6A1 002992635 Q87P35_nD2 Q87P35 Q87P35_VIBPA VP1683 Type III secretion system effector VopR 1683 131-325 f a.14 219 219.1 219.1.1 a+b complex topology Cysteine proteinases-like Cysteine proteinases Cysteine proteinases 001545160 e4rxvA1 002992636 Q87SN1_nD1 Q87SN1 Q87SN1_VIBPA VP0391 SMP domain-containing protein 391 6-45 f a.21 3440 3440.1 3440.1.1 extended segments Interferon alpha-inducible protein 27-like protein 1 Interferon alpha-inducible protein 27-like protein 1 Interferon alpha-inducible protein 27-like protein 1 000184806 e2loqA1 002992637 Q87T38_nD2 Q87T38 Q87T38_VIBPA VP0232 232 116-320 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000138444 e3lwbA1 002992638 Q87T38_nD1 Q87T38 Q87T38_VIBPA VP0232 232 1-115 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 001153568 e3va7A17 002992639 Q87QF1_nD1 Q87QF1 Q87QF1_VIBPA VP1198 1198 1-105 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 002816418 e7bkdB2 002992640 Q87QF1_nD2 Q87QF1 Q87QF1_VIBPA VP1198 1198 106-255 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 002816417 e7bkdB1 002992641 Q87N24_nD1 Q87N24 Q87N24_VIBPA VP2051 2051 1-110 f a.11 4020 4020.1 4020.1.1 a+b two layers a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 002132451 e6bb9A2 002992642 Q87N24_nD2 Q87N24 Q87N24_VIBPA VP2051 2051 111-270 f a.11 4045 4045.1 4045.1.1 a+b two layers barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 000005006 e1i2kA1 002992643 Q87JH9_nD1 Q87JH9 Q87JH9_VIBPA VPA0274 3353 6-299 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002773832 e6t17N1 002992644 Q87GM2_nD1 Q87GM2 Q87GM2_VIBPA VPA1293 Glutathione-dependent peroxiredoxin 4372 1-155 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002077068 e5k2jL1 002992645 Q87LB9_nD1 Q87LB9 Q87LB9_VIBPA VP2693 2692 41-144 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000006681 e3ci0K3 002992646 Q87TI1_nD1 Q87TI1 Q87TI1_VIBPA VP0088 DUF883 domain-containing protein 88 31-60 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 001758637 e2l7bA1 002992647 Q87RI6_nD1 Q87RI6 Q87RI6_VIBPA VP0808 808 1-270 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009052 e1jtvA1 002992648 Q87PY7_nD1 Q87PY7 Q87PY7_VIBPA VP1363 1363 11-268 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002992649 Q87QX8_nD1 Q87QX8 Q87QX8_VIBPA VP1021 DUF2498 family protein 1021 6-80 f a.11 3135 3135.1 3135.1.1 a+b two layers Uncharacterized protein yciN Uncharacterized protein yciN Uncharacterized protein yciN 000119483 e3m92B1 002992650 Q87MM6_nD1 Q87MM6 Q87MM6_VIBPA VP2205 2205 1-154 f a.17 7525 7525.1 7525.1.1 a/b three-layered sandwiches Phosphoglycerate mutase-like Phosphoglycerate mutase-like Phosphoglycerate mutase-like 000156537 e1ujbA1 002992651 Q87MB6_nD1 Q87MB6 Q87MB6_VIBPA VP2341 GreA_GreB domain-containing protein 2340 31-100 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 001852993 e2pn0B1 002992652 Q87MB6_nD2 Q87MB6 Q87MB6_VIBPA VP2341 GreA_GreB domain-containing protein 2340 101-185 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 002126108 e3bmbB1 002992653 Q87NJ5_nD3 Q87NJ5 Q87NJ5_VIBPA VP1873 Fumarate hydratase class I 1873 306-490 f a.17 2487 2487.2 2487.2.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains FumA C-terminal domain-like FumA C-terminal domain-like 001885839 e5dniA1 002992654 Q87NJ5_nD1 Q87NJ5 Q87NJ5_VIBPA VP1873 Fumarate hydratase class I 1873 1-150,281-300 f a.12 2485 2485.4 2485.4.1 a+b three layers Thioredoxin-like Fumarate hydratase N-terminal domain Fumarate hydratase N-terminal domain 002556446 e6unzA3 002992655 Q87NJ5_nD2 Q87NJ5 Q87NJ5_VIBPA VP1873 Fumarate hydratase class I 1873 151-280,491-500 f a.12 2485 2485.4 2485.4.1 a+b three layers Thioredoxin-like Fumarate hydratase N-terminal domain Fumarate hydratase N-terminal domain 002556444 e6unzA1 002992656 Q87IC9_nD2 Q87IC9 Q87IC9_VIBPA VPA0677 3756 206-263,291-770 f a.11 268 268.1 268.1.1 a+b two layers Sterol carrier protein-like Sterol carrier protein, SCP-related Sterol carrier protein, SCP-related 000427835 e3ssoB1 002992657 Q87IC9_nD1 Q87IC9 Q87IC9_VIBPA VPA0677 3756 16-74,101-135,166-205 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001697169 e5c2vD1 002992658 Q87GJ8_nD1 Q87GJ8 Q87GJ8_VIBPA VPA1318 DUF4347 domain-containing protein 4397 11-150 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001179119 e2x8aA4 002992659 Q87K78_nD3 Q87K78 Q87K78_VIBPA VPA0020 Histidine kinase domain-containing protein 3099 201-340 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006566 e1y8oA2 002992660 Q87K78_nD1 Q87K78 Q87K78_VIBPA VPA0020 Histidine kinase domain-containing protein 3099 6-145 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 001153052 e1y2mB5 002992661 Q87K78_nD2 Q87K78 Q87K78_VIBPA VPA0020 Histidine kinase domain-containing protein 3099 151-200 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002625009 e6pajB2 002992662 Q87GU4_nD1 Q87GU4 LUXP_VIBPA VPA1221 luxP Autoinducer 2-binding periplasmic protein LuxP 4300 26-180,311-340 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001790222 e4yr7B1 002992663 Q87GU4_nD2 Q87GU4 LUXP_VIBPA VPA1221 luxP Autoinducer 2-binding periplasmic protein LuxP 4300 181-310,341-360 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 002142664 e6bgdA1 002992664 Q87MQ6_nD1 Q87MQ6 Q87MQ6_VIBPA VP2175 2175 21-440 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002705927 e7kgvB1 002992665 Q87LR4_nD3 Q87LR4 Q87LR4_VIBPA VP2547 Aspartokinase 2547 321-390 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001842556 e3l76A3 002992666 Q87LR4_nD2 Q87LR4 Q87LR4_VIBPA VP2547 Aspartokinase 2547 256-320 f a.11 304 304.120 304.120.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in ThiI Ferredoxin-like domain in ThiI 002073201 e3ldgA2 002992667 Q87LR4_nD1 Q87LR4 Q87LR4_VIBPA VP2547 Aspartokinase 2547 1-255 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 002407642 e5yeiE3 002992668 Q87SH6_nD1 Q87SH6 Q87SH6_VIBPA VP0447 gmhA Phosphoheptose isomerase 447 6-190 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001720554 e5by2A1 002992669 Q87SJ0_nD2 Q87SJ0 Q87SJ0_VIBPA VP0433 Periplasmic serine endoprotease DegP-like 433 266-360 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 001255788 e3ou0A8 002992670 Q87SJ0_nD1 Q87SJ0 Q87SJ0_VIBPA VP0433 Periplasmic serine endoprotease DegP-like 433 21-265 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000022094 e1ky9B1 002992671 Q87SJ0_nD3 Q87SJ0 Q87SJ0_VIBPA VP0433 Periplasmic serine endoprotease DegP-like 433 361-455 f a.1 7 7.1 7.1.1 beta barrels PDZ domain PDZ domain PDZ domain 001562805 e4yo1A2 002992672 Q87K51_nD1 Q87K51 Q87K51_VIBPA VPA0048 Orphan protein 3126 6-35 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001181097 e3bcvB2 002992673 Q87RJ4_nD3 Q87RJ4 DNLJ_VIBPA VP0800 ligA DNA ligase 800 406-585 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000153073 e4glxA2 002992674 Q87RJ4_nD4 Q87RJ4 DNLJ_VIBPA VP0800 ligA DNA ligase 800 596-670 f a.17 7568 7568.1 7568.1.1 a/b three-layered sandwiches BRCT domain BRCT domain BRCT domain 000165204 e2ebuA1 002992675 Q87RJ4_nD2 Q87RJ4 DNLJ_VIBPA VP0800 ligA DNA ligase 800 316-405 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000153074 e4glxA3 002992676 Q87RJ4_nD1 Q87RJ4 DNLJ_VIBPA VP0800 ligA DNA ligase 800 6-315 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000147586 e3uq8A1 002992677 Q87MC7_nD1 Q87MC7 Q87MC7_VIBPA VP2329 2329 21-525 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 001549199 e4r0cD1 002992678 Q87LK3_nD1 Q87LK3 Q87LK3_VIBPA VP2609 2608 21-225 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 000089856 e1oupA1 002992679 Q87T77_nD1 Q87T77 Q87T77_VIBPA VP0193 193 1-250 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001902972 e4p02A1 002992680 Q87HI8_nD2 Q87HI8 Q87HI8_VIBPA VPA0975 Multidrug resistance protein NorM 4054 11-20,241-455 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002992681 Q87HI8_nD1 Q87HI8 Q87HI8_VIBPA VPA0975 Multidrug resistance protein NorM 4054 21-240 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002473003 e6nc9A2 002992682 Q79YV6_nD1 Q79YV6 Q79YV6_VIBPA VP2254 Flagellar secretion chaperone FliS 2254 1-130 f a.7 601 601.13 601.13.1 alpha bundles Four-helical up-and-down bundle Flagellar export chaperone FliS Flagellar export chaperone FliS 001759309 e4iwbA1 002992683 Q87TL0_nD3 Q87TL0 Q87TL0_VIBPA VP0059 59 171-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002992684 Q87TL0_nD1 Q87TL0 Q87TL0_VIBPA VP0059 59 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002992685 Q87TL0_nD2 Q87TL0 Q87TL0_VIBPA VP0059 59 91-170,276-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002992686 Q87QP5_nD2 Q87QP5 Q87QP5_VIBPA VP1104 1104 66-160 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000315937 e2gqqC2 002992687 Q87QP5_nD1 Q87QP5 Q87QP5_VIBPA VP1104 1104 1-65 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001551612 e4pcqB2 002992688 Q87RP4_nD1 Q87RP4 MIAB_VIBPA VP0733 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 733 1-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002781154 e7mjyA2 002992689 Q87RP4_nD2 Q87RP4 MIAB_VIBPA VP0733 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 733 146-380,441-450 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002781145 e7mjwA1 002992690 Q87RP4_nD3 Q87RP4 MIAB_VIBPA VP0733 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 733 381-440 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001558576 e2qgqA2 002992691 Q87H01_nD1 Q87H01 Q87H01_VIBPA VPA1164 HTH cro/C1-type domain-containing protein 4243 1-65 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000137778 e3jxbC1 002992692 Q87H01_nD2 Q87H01 Q87H01_VIBPA VPA1164 HTH cro/C1-type domain-containing protein 4243 71-130 f a.6 148 148.1 148.1.1 alpha arrays Histone-like Histone-related Histone 000003410 e1tafB1 002992693 Q87G32_nD1 Q87G32 Q87G32_VIBPA VPA1485 4564 11-40,111-123,176-275 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002035764 e2vpxF1 002992694 Q87J65_nD1 Q87J65 Q87J65_VIBPA VPA0388 3467 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002992695 Q87J65_nD2 Q87J65 Q87J65_VIBPA VPA0388 3467 91-303 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002992696 Q87LH2_nD3 Q87LH2 Q87LH2_VIBPA VP2640 DUF2254 domain-containing protein 2639 161-195,281-415 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001393770 e3lpzA1 002992697 Q87LH2_nD1 Q87LH2 Q87LH2_VIBPA VP2640 DUF2254 domain-containing protein 2639 6-160 f a.14 1189 1189.1 1189.1.1 a+b complex topology VSG (variant surface glycoprotein) N-terminal domain VSG (variant surface glycoprotein) N-terminal domain VSG (variant surface glycoprotein) N-terminal domain 002337262 e6eluA1 002992698 Q87LH2_nD2 Q87LH2 Q87LH2_VIBPA VP2640 DUF2254 domain-containing protein 2639 201-280 f a.14 325 325.1 325.1.3 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain 000135486 e2wk5A2 002992699 Q87TP3_nD1 Q87TP3 Q87TP3_VIBPA VP0026 Inner membrane protein 26 31-55 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002992700 Q87QX7_nD8 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 756-815 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712013 e4rulA1 002992701 Q87QX7_nD5 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 596-640 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712013 e4rulA1 002992702 Q87QX7_nD2 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 286-410 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002755 e1mw9X3 002992703 Q87QX7_nD6 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 641-705 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712014 e4rulA2 002992704 Q87QX7_nD9 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 816-870 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000008018 e1yuaA2 002992705 Q87QX7_nD7 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 711-750 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712015 e4rulA3 002992706 Q87QX7_nD1 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 1-165 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 002607434 e6pcmA1 002992707 Q87QX7_nD4 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 166-220,481-595 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001308570 e1mw8X2 002992708 Q87QX7_nD3 Q87QX7 Q87QX7_VIBPA VP1022 topA DNA topoisomerase 1 1022 221-285,411-480 f a.1 264 264.2 264.2.1 beta barrels LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain 001713356 e4rulA9 002992709 Q87QF7_nD1 Q87QF7 Q87QF7_VIBPA VP1192 1192 41-55,111-159 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000023840 e2eifA1 002992710 Q87HN4_nD1 Q87HN4 MODC_VIBPA VPA0929 modC Molybdenum import ATP-binding protein ModC 4008 1-225 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102599 e2onkF1 002992711 Q87HN4_nD2 Q87HN4 MODC_VIBPA VPA0929 modC Molybdenum import ATP-binding protein ModC 4008 231-360 f a.1 2 2.4 2.4.1 beta barrels OB-fold MOP-like MOP-like 001411292 e2yyzA2 002992712 Q87GP6_nD1 Q87GP6 Q87GP6_VIBPA VPA1269 Integrase 4348 16-145 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 000140402 e3nrwA1 002992713 Q87GP6_nD2 Q87GP6 Q87GP6_VIBPA VPA1269 Integrase 4348 151-219,256-445 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000299163 e2a3vD1 002992714 Q87GP6_nD5 Q87GP6 Q87GP6_VIBPA VPA1269 Integrase 4348 766-875 f a.13 210 210.1 210.1.2 a+b four layers Ntn/PP2C Ntn Penicillin acylase, catalytic domain 002811111 e7repA1 002992715 Q87GP6_nD3 Q87GP6 Q87GP6_VIBPA VPA1269 Integrase 4348 476-535 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000154242 e4a8eA2 002992716 Q87GP6_nD4 Q87GP6 Q87GP6_VIBPA VPA1269 Integrase 4348 561-775 f a.7 192 192.5 192.5.1 alpha bundles Long alpha-hairpin HR1 repeat HR1 repeat 000060610 e2rmkB1 002992717 Q87K59_nD1 Q87K59 Q87K59_VIBPA VPA0039 DUF3081 domain-containing protein 3118 6-80 f a.11 331 331.1 331.1.1 a+b two layers TBP-like TATA-box binding protein-like TATA-box binding protein-like 001837659 e3vn5A2 002992718 Q87GX0_nD2 Q87GX0 Q87GX0_VIBPA VPA1195 4274 141-205 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001148285 e4gvpA5 002992719 Q87GX0_nD1 Q87GX0 Q87GX0_VIBPA VPA1195 4274 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001918783 e5hevB2 002992720 Q87HU5_nD1 Q87HU5 Q87HU5_VIBPA VPA0861 Peptidase_M48 domain-containing protein 3940 26-255 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002431158 e6aitA1 002992721 Q87M00_nD1 Q87M00 RIMP_VIBPA VP2458 rimP Ribosome maturation factor RimP 2458 1-80 f a.11 327 327.4 327.4.1 a+b two layers Alpha-lytic protease prodomain-like YhbC-like, N-terminal domain YhbC-like, N-terminal domain 002764150 e7nasX2 002992722 Q87M00_nD2 Q87M00 RIMP_VIBPA VP2458 rimP Ribosome maturation factor RimP 2458 86-150 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002092608 e5gl6B2 002992723 Q87IM1_nD1 Q87IM1 TRPB2_VIBPA VPA0585 trpB2 Tryptophan synthase beta chain 2 3664 1-210 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002582651 e6o1hB1 002992724 Q87IM1_nD2 Q87IM1 TRPB2_VIBPA VPA0585 trpB2 Tryptophan synthase beta chain 2 3664 211-400 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002582652 e6o1hB2 002992725 Q87K47_nD1 Q87K47 Q87K47_VIBPA VPA0051 3130 6-255,276-420 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002992726 Q87KB6_nD2 Q87KB6 ILVD_VIBPA VP3061 ilvD Dihydroxy-acid dehydratase 3060 421-610 f a.17 2007 2007.1 2007.1.20 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Dehydratase-like 002618632 e6nteA2 002992727 Q87KB6_nD1 Q87KB6 ILVD_VIBPA VP3061 ilvD Dihydroxy-acid dehydratase 3060 6-165,186-420 f a.6 4303 4303.1 4303.1.1 alpha arrays lvD/EDD N-terminal domain-like lvD/EDD N-terminal domain-like lvD/EDD N-terminal domain-like 002522034 e6ovtA1 002992728 Q79YY8_nD1 Q79YY8 Q79YY8_VIBPA VP0778 Flagellar hook protein FlgE 778 1-70,396-435 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002992729 Q79YY8_nD2 Q79YY8 Q79YY8_VIBPA VP0778 Flagellar hook protein FlgE 778 71-150,321-395 f a.5 4167 4167.1 4167.1.1 beta complex topology Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain 002323884 e5npyA1 002992730 Q79YY8_nD3 Q79YY8 Q79YY8_VIBPA VP0778 Flagellar hook protein FlgE 778 156-320 f a.3 4998 4998.1 4998.1.1 beta sandwiches Flagellar hook protein flgE D2 domain-like Flagellar hook protein flgE D2 domain Flagellar hook protein flgE D2 domain 002524022 e6ndxB1 002992731 Q87I54_nD1 Q87I54 Q87I54_VIBPA VPA0752 3831 1-128 f a.9 5038 5038.2 5038.2.1 alpha superhelices Cytochrome c oxidase subunit I-like MAPEG domain-like MAPEG domain-like 001287012 e4bpmA1 002992732 Q87HH9_nD1 Q87HH9 Q87HH9_VIBPA VPA0986 4065 6-109 f a.3 66 66.1 66.1.1 beta sandwiches ISP domain ISP domain ISP domain 002827334 e7szeB2 002992733 Q87NX7_nD1 Q87NX7 Q87NX7_VIBPA VP1741 1741 6-445 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002444945 e6csfM1 002992734 Q87G38_nD2 Q87G38 Q87G38_VIBPA VPA1479 DUF3302 domain-containing protein 4558 86-115 f a.7 604 604.1 604.1.1 alpha bundles Spectrin repeat-like Spectrin repeat Spectrin repeat 002736839 e6z0lD1 002992735 Q87G38_nD1 Q87G38 Q87G38_VIBPA VPA1479 DUF3302 domain-containing protein 4558 1-75 f a.14 3559 3559.1 3559.1.1 a+b complex topology Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 002755137 e7enav1 002992736 Q87JV0_nD2 Q87JV0 Q87JV0_VIBPA VPA0148 3227 136-220 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001148327 e2oqrA4 002992737 Q87JV0_nD1 Q87JV0 Q87JV0_VIBPA VPA0148 3227 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002992738 Q87TP1_nD1 Q87TP1 Q87TP1_VIBPA VP0028 28 1-120,296-325 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 000396990 e3nx4B1 002992739 Q87TP1_nD2 Q87TP1 Q87TP1_VIBPA VP0028 28 121-295 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002121240 e5gxeA2 002992740 Q87G06_nD1 Q87G06 Q87G06_VIBPA VPA1514 Superoxide dismutase [Cu-Zn] 4593 16-170 f a.3 11 11.1 11.1.3 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Cu,Zn superoxide dismutase-like 000001823 e1oalA1 002992741 Q87TL9_nD1 Q87TL9 Q87TL9_VIBPA VP0050 50 26-310 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002992742 Q87PD6_nD1 Q87PD6 Q87PD6_VIBPA VP1578 TMhelix containing protein 1578 46-125 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002813401 e7latA2 002992743 Q87PD6_nD2 Q87PD6 Q87PD6_VIBPA VP1578 TMhelix containing protein 1578 126-150 f a.7 604 604.13 604.13.1 alpha bundles Spectrin repeat-like USP8 N-terminal domain-like USP8 N-terminal domain-like 000003841 e2a9uA1 002992744 Q87MP5_nD1 Q87MP5 Q87MP5_VIBPA VP2186 2186 6-140 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 001236702 e4di0B2 002992745 Q87LW3_nD1 Q87LW3 Q87LW3_VIBPA VP2495 Aconitate hydratase B 2495 21-160 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000059814 e1l5jB1 002992746 Q87LW3_nD5 Q87LW3 Q87LW3_VIBPA VP2495 Aconitate hydratase B 2495 681-865 f a.17 7542 7542.1 7542.1.1 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain 002483242 e1l5jB4 002992747 Q87LW3_nD2 Q87LW3 Q87LW3_VIBPA VP2495 Aconitate hydratase B 2495 161-370 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000117823 e1l5jB3 002992748 Q87LW3_nD4 Q87LW3 Q87LW3_VIBPA VP2495 Aconitate hydratase B 2495 531-680 f a.17 7542 7542.1 7542.1.2 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain II 002483244 e1l5jB6 002992749 Q87LW3_nD3 Q87LW3 Q87LW3_VIBPA VP2495 Aconitate hydratase B 2495 371-530 f a.17 7542 7542.1 7542.1.1 a/b three-layered sandwiches Aconitase iron-sulfur domain Aconitase iron-sulfur domain Aconitase iron-sulfur domain 002482578 e1c96A4 002992750 Q87FI4_nD1 Q87FI4 Q87FI4_VIBPA VPA1695 4774 6-170 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009164 e1s6yA2 002992751 Q87FI4_nD2 Q87FI4 Q87FI4_VIBPA VPA1695 4774 171-435 f a.14 279 279.1 279.1.1 a+b complex topology LDH C-terminal domain-like LDH C-terminal domain-like LDH C-terminal domain-like 000007490 e1up7A1 002992752 Q87JE5_nD1 Q87JE5 Q87JE5_VIBPA VPA0308 Nudix hydrolase domain-containing protein 3387 1-185 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 002593796 e3qsjA1 002992753 Q87JE5_nD2 Q87JE5 Q87JE5_VIBPA VPA0308 Nudix hydrolase domain-containing protein 3387 186-235 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002059219 e3gz6B3 002992754 Q87TK6_nD1 Q87TK6 Q87TK6_VIBPA VP0063 Gluconokinase 63 1-170 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000101102 e1ko5B1 002992755 Q87SP6_nD1 Q87SP6 Q87SP6_VIBPA VP0376 EAL domain-containing protein 376 6-240 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 000412323 e3pjuA1 002992756 Q87NX0_nD1 Q87NX0 Q87NX0_VIBPA VP1748 Secreted protein 1748 56-80 f a.6 103 103.4 103.4.1 alpha arrays RuvA-C Elongation factor TFIIS domain 2/ Kix domain of creb binding protein Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 001716751 e4d7xA1 002992757 Q87T50_nD3 Q87T50 Q87T50_VIBPA VP0220 220 276-360 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002992758 Q87T50_nD7 Q87T50 Q87T50_VIBPA VP0220 220 781-889 f a.11 221 221.8 221.8.1 a+b two layers beta-Grasp GfcC GfcC 000146308 e3p42A2 002992759 Q87T50_nD4 Q87T50 Q87T50_VIBPA VP0220 220 361-450,521-540 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002992760 Q87T50_nD2 Q87T50 Q87T50_VIBPA VP0220 220 191-275 f a.11 221 221.1 221.1.4 a+b two layers beta-Grasp Ubiquitin-related Nqo1 middle domain-like 001393162 e2j58E1 002992761 Q87T50_nD5 Q87T50 Q87T50_VIBPA VP0220 220 451-460,541-640 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 000006205 e1zud21 002992762 Q87T50_nD1 Q87T50 Q87T50_VIBPA VP0220 220 121-190 f a.11 6016 6016.1 6016.1.1 a+b two layers Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza Domain 1 of outer membrane lipoprotein Wza 001393163 e2j58E2 002992763 Q87T50_nD6 Q87T50 Q87T50_VIBPA VP0220 220 646-780 f a.11 221 221.8 221.8.1 a+b two layers beta-Grasp GfcC GfcC 000146307 e3p42A1 002992764 Q87HS0_nD1 Q87HS0 DDL_VIBPA VPA0886 ddl D-alanine--D-alanine ligase 3965 6-329 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 002330675 e6dgiA2 002992765 Q56702_nD2 Q56702 FLAB_VIBPA VP2259VP0790 flaBflaD Polar flagellin B/D 2259 176-275 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002031929 e5h5wA1 002992766 Q56702_nD1 Q56702 FLAB_VIBPA VP2259VP0790 flaBflaD Polar flagellin B/D 2259 1-175,276-378 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002717224 e6xl0T1 002992767 Q87QK2_nD1 Q87QK2 Q87QK2_VIBPA VP1147 Histidine kinase 1147 1-190 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002519516 e6hq7A1 002992768 Q87QK2_nD2 Q87QK2 Q87QK2_VIBPA VP1147 Histidine kinase 1147 191-400 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000138716 e3m1tA1 002992769 Q87FF9_nD1 Q87FF9 Q87FF9_VIBPA VPA1720 4799 6-175 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002439920 e6c30A1 002992770 Q87RU5_nD2 Q87RU5 Q87RU5_VIBPA VP0681 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 681 206-369 f a.17 7580 7580.1 7580.1.1 a/b three-layered sandwiches RibA-like RibA-like RibA-like 002472991 e6mnzA1 002992771 Q87RU5_nD1 Q87RU5 Q87RU5_VIBPA VP0681 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 681 1-205 f a.14 297 297.1 297.1.1 a+b complex topology YrdC/RibB YrdC/RibB YrdC/RibB 002472992 e6mnzA2 002992772 Q87RQ5_nD4 Q87RQ5 Q87RQ5_VIBPA VP0722 mrdA Peptidoglycan D,D-transpeptidase MrdA 722 256-555,576-625 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 002529431 e1qmeA4 002992773 Q87RQ5_nD3 Q87RQ5 Q87RQ5_VIBPA VP0722 mrdA Peptidoglycan D,D-transpeptidase MrdA 722 51-85,166-255,486-500 f a.5 3702 3702.1 3702.1.1 beta complex topology Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain 002488316 e6g9fA4 002992774 Q87RQ5_nD2 Q87RQ5 Q87RQ5_VIBPA VP0722 mrdA Peptidoglycan D,D-transpeptidase MrdA 722 86-165 f a.11 308 308.2 308.2.1 a+b two layers ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain 002488313 e6g9fA1 002992775 Q87RQ5_nD1 Q87RQ5 Q87RQ5_VIBPA VP0722 mrdA Peptidoglycan D,D-transpeptidase MrdA 722 16-50 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 002832639 e7bn9A1 002992776 Q87HN9_nD1 Q87HN9 Q87HN9_VIBPA VPA0924 Competence protein ComFB 4003 6-85 f a.19 3927 3927.1 3927.1.1 few secondary structure elements Late competence protein ComFB Late competence protein ComFB Late competence protein ComFB 001488593 e4waiC1 002992777 Q87FY9_nD1 Q87FY9 Q87FY9_VIBPA VPA1531 4610 36-284 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000023248 e1o5eH1 002992778 Q87HC9_nD1 Q87HC9 Q87HC9_VIBPA VPA1036 ImpA_N domain-containing protein 4115 6-260 f a.9 109 109.51 109.51.1 alpha superhelices Repetitive alpha hairpins TssA helical domains TssA helical domains 002491401 e6hs5A1 002992779 Q87HC9_nD2 Q87HC9 Q87HC9_VIBPA VPA1036 ImpA_N domain-containing protein 4115 301-370 f a.9 109 109.51 109.51.1 alpha superhelices Repetitive alpha hairpins TssA helical domains TssA helical domains 002439590 e6hs6A1 002992780 Q87QE0_nD1 Q87QE0 Q87QE0_VIBPA VP1209 1209 1-170 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011070 e2cy2A1 002992781 Q87PG7_nD2 Q87PG7 Q87PG7_VIBPA VP1535 1535 151-310 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001495299 e4r2kA2 002992782 Q87PG7_nD1 Q87PG7 Q87PG7_VIBPA VP1535 1535 1-150 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001495298 e4r2kA1 002992783 Q87HM9_nD2 Q87HM9 Q87HM9_VIBPA VPA0934 OMP_b-brl domain-containing protein 4013 56-204 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 002605135 e6r3wA1 002992784 Q87HM9_nD1 Q87HM9 Q87HM9_VIBPA VPA0934 OMP_b-brl domain-containing protein 4013 6-45 f a.7 601 601.13 601.13.1 alpha bundles Four-helical up-and-down bundle Flagellar export chaperone FliS Flagellar export chaperone FliS 002388821 e5xefA1 002992785 Q87H29_nD1 Q87H29 Q87H29_VIBPA VPA1136 4215 1-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001410173 e4hamA1 002992786 Q87H29_nD2 Q87H29 Q87H29_VIBPA VPA1136 4215 86-400 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001117378 e2zc0D1 002992787 Q87H29_nD3 Q87H29 Q87H29_VIBPA VPA1136 4215 386-470 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001296924 e4m2kA2 002992788 Q79YV2_nD1 Q79YV2 Q79YV2_VIBPA VPA0262 Negative regulator of flagellin synthesis 3341 56-90 f a.21 579 579.1 579.1.1 extended segments Anti-sigma factor FlgM Anti-sigma factor FlgM Anti-sigma factor FlgM 001159587 e1rp3H2 002992789 Q87HA1_nD1 Q87HA1 Q87HA1_VIBPA VPA1064 uroporphyrinogen-III C-methyltransferase 4143 41-165 f a.17 7550 7550.1 7550.1.1 a/b three-layered sandwiches Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain 001937456 e1s4dE1 002992790 Q87HA1_nD2 Q87HA1 Q87HA1_VIBPA VPA1064 uroporphyrinogen-III C-methyltransferase 4143 166-290 f a.11 1137 1137.1 1137.1.1 a+b two layers Tetrapyrrole methylase C-terminal domain-like Tetrapyrrole methylase C-terminal domain Tetrapyrrole methylase C-terminal domain 001937569 e2yboA1 002992791 Q87JW0_nD3 Q87JW0 Q87JW0_VIBPA VPA0138 3217 226-460 f a.1 3053 3053.1 3053.1.1 beta barrels barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD 002123826 e5nj9A3 002992792 Q87JW0_nD2 Q87JW0 Q87JW0_VIBPA VPA0138 3217 96-220 f a.11 512 512.1 512.1.1 a+b two layers a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 002123824 e5nj9A1 002992793 Q87JW0_nD1 Q87JW0 Q87JW0_VIBPA VPA0138 3217 1-95 f a.11 512 512.1 512.1.1 a+b two layers a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 002123825 e5nj9A2 002992794 Q87NY0_nD1 Q87NY0 Q87NY0_VIBPA VP1738 DNA primase 1738 16-130 f a.7 601 601.16 601.16.1 alpha bundles Four-helical up-and-down bundle FAT domain of focal adhesion kinase FAT domain of focal adhesion kinase 001721597 e4xekA1 002992795 Q87FK6_nD2 Q87FK6 Q87FK6_VIBPA VPA1673 L-arabinose-binding periplasmic protein 4752 141-285,316-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001031022 e8abpA1 002992796 Q87FK6_nD1 Q87FK6 Q87FK6_VIBPA VPA1673 L-arabinose-binding periplasmic protein 4752 31-140,286-315 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001005427 e8abpA3 002992797 Q87S56_nD1 Q87S56 RDGC_VIBPA VP0568 rdgC Recombination-associated protein RdgC 568 1-300 f a.11 3435 3435.1 3435.1.1 a+b two layers Recombination-associated protein rdgC Recombination-associated protein rdgC Recombination-associated protein rdgC 000184857 e2owlA1 002992798 Q87IY4_nD1 Q87IY4 Q87IY4_VIBPA VPA0472 3551 21-365 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 000420253 e3pgsA1 002992799 Q87SQ0_nD2 Q87SQ0 Q87SQ0_VIBPA VP0372 372 281-575 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002816426 e7ciwA1 002992800 Q87SQ0_nD1 Q87SQ0 Q87SQ0_VIBPA VP0372 372 11-270 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 000010587 e1iuqA1 002992801 Q87Q40_nD1 Q87Q40 ASTE_VIBPA VP1310 astE Succinylglutamate desuccinylase 1310 6-260 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001176397 e2bcoB2 002992802 Q87Q40_nD2 Q87Q40 ASTE_VIBPA VP1310 astE Succinylglutamate desuccinylase 1310 261-340 f a.14 325 325.2 325.2.1 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid Succinylglutamate desuccinylase / Aspartoacylase C-terminal domain Succinylglutamate desuccinylase / Aspartoacylase C-terminal domain 001176396 e2g9dA3 002992803 Q87RW8_nD2 Q87RW8 Q87RW8_VIBPA VP0658 Pilus assembly protein PilW 658 36-208 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001890003 e5g24A1 002992804 Q87RW8_nD1 Q87RW8 Q87RW8_VIBPA VP0658 Pilus assembly protein PilW 658 11-35 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000161689 e2hi2A1 002992805 Q87N47_nD1 Q87N47 Q87N47_VIBPA VP2028 lapA Probable lipopolysaccharide assembly protein A 2028 1-25 f a.7 633 633.23 633.23.1 alpha bundles Bromodomain-like Claudin Claudin 002093240 e5vouF1 002992806 Q87N47_nD2 Q87N47 Q87N47_VIBPA VP2028 lapA Probable lipopolysaccharide assembly protein A 2028 41-85 f a.7 3877 3877.1 3877.1.2 alpha bundles Membrane protein insertase YidC-related Membrane protein insertase YidC-related DUF106 001684085 e5c8jL1 002992807 Q87TM2_nD1 Q87TM2 Q87TM2_VIBPA VP0047 47 1-265,556-565 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002992808 Q87TM2_nD2 Q87TM2 Q87TM2_VIBPA VP0047 47 271-555 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002992809 Q87TE3_nD1 Q87TE3 Q87TE3_VIBPA VP0127 N-acetyltransferase domain-containing protein 127 1-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000169038 e3efaA1 002992810 Q87TE3_nD2 Q87TE3 Q87TE3_VIBPA VP0127 N-acetyltransferase domain-containing protein 127 156-305 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000071815 e1t82B1 002992811 Q87I52_nD1 Q87I52 Q87I52_VIBPA VPA0754 Endo/exonuclease/phosphatase domain-containing protein 3833 66-90 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 001174794 e2xmoB3 002992812 Q87I52_nD2 Q87I52 Q87I52_VIBPA VPA0754 Endo/exonuclease/phosphatase domain-containing protein 3833 43-65,91-230,261-465 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 001487354 e4ruwA1 002992813 Q87FG2_nD1 Q87FG2 Q87FG2_VIBPA VPA1717 4796 6-60 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001551612 e4pcqB2 002992814 Q87FG2_nD2 Q87FG2 Q87FG2_VIBPA VPA1717 4796 61-150 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000315937 e2gqqC2 002992815 Q87IU9_nD1 Q87IU9 Q87IU9_VIBPA VPA0507 HTH cro/C1-type domain-containing protein 3586 6-105 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001510513 e3op9A1 002992816 Q87J78_nD1 Q87J78 Q87J78_VIBPA VPA0375 purA Adenylosuccinate synthetase 3454 6-418 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000101968 e1p9bA1 002992817 Q87H93_nD1 Q87H93 Q87H93_VIBPA VPA1072 T2SS-T3SS_pil_N domain-containing protein 4151 41-145 f a.11 304 304.7 304.7.1 a+b two layers Alpha-beta plaits Protease propeptides/inhibitors Protease propeptides/inhibitors 001820946 e1r6vA1 002992818 Q87N79_nD1 Q87N79 Q87N79_VIBPA VP1996 Peptide ABC transporter permease 1996 101-230 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002387808 e5xu1M2 002992819 Q87N79_nD2 Q87N79 Q87N79_VIBPA VP1996 Peptide ABC transporter permease 1996 56-100,231-280 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002387807 e5xu1M1 002992820 Q87N79_nD3 Q87N79 Q87N79_VIBPA VP1996 Peptide ABC transporter permease 1996 6-55,281-425 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002992821 Q87IR2_nD1 Q87IR2 CYOE1_VIBPA VPA0544 cyoE1 Protoheme IX farnesyltransferase 1 3623 6-295 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 002774821 e6m31B1 002992822 Q87HY4_nD1 Q87HY4 Q87HY4_VIBPA VPA0822 3901 1-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001554269 e4u02B1 002992823 Q87I62_nD1 Q87I62 Q87I62_VIBPA VPA0744 Phosphorelay protein LuxU 3823 26-134 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000147380 e3us6A1 002992824 Q87J90_nD4 Q87J90 Q87J90_VIBPA VPA0363 3442 1-40,331-505 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002992825 Q87J90_nD3 Q87J90 Q87J90_VIBPA VPA0363 3442 136-185,276-330 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001312384 e4k0eA3 002992826 Q87J90_nD1 Q87J90 Q87J90_VIBPA VPA0363 3442 41-135 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002672273 e6vejC1 002992827 Q87J90_nD7 Q87J90 Q87J90_VIBPA VPA0363 3442 656-700,791-840 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002992828 Q87J90_nD8 Q87J90 Q87J90_VIBPA VPA0363 3442 506-545,841-1005 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002672280 e6vejC8 002992829 Q87J90_nD5 Q87J90 Q87J90_VIBPA VPA0363 3442 546-655 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816517 e7cz9B4 002992830 Q87J90_nD2 Q87J90 Q87J90_VIBPA VPA0363 3442 186-270 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 001312385 e4k0eA4 002992831 Q87J90_nD6 Q87J90 Q87J90_VIBPA VPA0363 3442 701-730,751-785 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 001312389 e4k0eA8 002992832 Q87HH7_nD1 Q87HH7 Q87HH7_VIBPA VPA0988 4067 6-45 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 001852993 e2pn0B1 002992833 Q87HH7_nD2 Q87HH7 Q87HH7_VIBPA VPA0988 4067 46-130 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 002126108 e3bmbB1 002992834 Q87G73_nD2 Q87G73 Q87G73_VIBPA VPA1444 4523 316-565 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002036805 e5l22B1 002992835 Q87G73_nD1 Q87G73 Q87G73_VIBPA VPA1444 4523 11-310 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002588605 e6p6jA1 002992836 Q87QN4_nD1 Q87QN4 Q87QN4_VIBPA VP1115 bioC Malonyl-[acyl-carrier protein] O-methyltransferase 1115 6-268 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000009342 e1m6eX1 002992837 Q87NE8_nD1 Q87NE8 Q87NE8_VIBPA VP1920 1920 36-425 f a.7 3719 3719.1 3719.1.1 alpha bundles Imelysin peptidase-like Imelysin peptidase-like Imelysin peptidase-like 001132250 e4ecgA1 002992838 Q87IL1_nD1 Q87IL1 Q87IL1_VIBPA VPA0595 3674 1-484 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002992839 Q87HA0_nD4 Q87HA0 Q87HA0_VIBPA VPA1065 4144 621-760 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002574433 e4aayE2 002992840 Q87HA0_nD3 Q87HA0 Q87HA0_VIBPA VPA1065 4144 101-175,376-590,611-620 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001693030 e2nyaF4 002992841 Q87HA0_nD5 Q87HA0 Q87HA0_VIBPA VPA1065 4144 761-855 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 001270543 e3iwaA3 002992842 Q87HA0_nD2 Q87HA0 Q87HA0_VIBPA VPA1065 4144 176-375 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001878386 e5chcE1 002992843 Q87HA0_nD6 Q87HA0 Q87HA0_VIBPA VPA1065 4144 861-915 f a.6 101 101.32 101.32.1 alpha arrays HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin 000185707 e4e6kG1 002992844 Q87HA0_nD1 Q87HA0 Q87HA0_VIBPA VPA1065 4144 51-100 f a.11 1001 1001.1 1001.1.1 a+b two layers Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 001693254 e2vpwE2 002992845 Q87IB6_nD3 Q87IB6 Q87IB6_VIBPA VPA0690 Protein BatD 3769 301-335 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001887570 e5dccB2 002992846 Q87IB6_nD4 Q87IB6 Q87IB6_VIBPA VPA0690 Protein BatD 3769 341-415 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 001851634 e3c18C1 002992847 Q87IB6_nD1 Q87IB6 Q87IB6_VIBPA VPA0690 Protein BatD 3769 36-180 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001298564 e4phzA3 002992848 Q87IB6_nD2 Q87IB6 Q87IB6_VIBPA VPA0690 Protein BatD 3769 186-300 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001813077 e4acqA10 002992849 Q87FK3_nD3 Q87FK3 ARAA_VIBPA VPA1676 araA L-arabinose isomerase 4755 326-495 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002792741 e7chlG2 002992850 Q87FK3_nD2 Q87FK3 ARAA_VIBPA VPA1676 araA L-arabinose isomerase 4755 176-325 f a.17 2007 2007.1 2007.1.11 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like L-fucose isomerase, N-terminal and second domains 001685608 e4f2dA3 002992851 Q87FK3_nD1 Q87FK3 ARAA_VIBPA VPA1676 araA L-arabinose isomerase 4755 6-175 f a.17 2007 2007.1 2007.1.11 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like L-fucose isomerase, N-terminal and second domains 002777178 e7cwvD1 002992852 Q87HX3_nD1 Q87HX3 GLGC2_VIBPA VPA0833 glgC2 Glucose-1-phosphate adenylyltransferase 2 3912 1-290 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002575748 e6si8C2 002992853 Q87HX3_nD2 Q87HX3 GLGC2_VIBPA VPA0833 glgC2 Glucose-1-phosphate adenylyltransferase 2 3912 291-400 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 002417050 e5w5rE1 002992854 Q87SI0_nD1 Q87SI0 Q87SI0_VIBPA VP0443 443 26-240 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001570394 e2yiuB1 002992855 Q87MM5_nD3 Q87MM5 Q87MM5_VIBPA VP2206 Protease 3 2206 471-705 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 001182870 e3cwwB11 002992856 Q87MM5_nD4 Q87MM5 Q87MM5_VIBPA VP2206 Protease 3 2206 706-925 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 001182872 e3cwwB13 002992857 Q87MM5_nD1 Q87MM5 Q87MM5_VIBPA VP2206 Protease 3 2206 6-235 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 002778753 e7k1dB1 002992858 Q87MM5_nD2 Q87MM5 Q87MM5_VIBPA VP2206 Protease 3 2206 236-470 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 002778754 e7k1dB2 002992859 Q87ML3_nD1 Q87ML3 Q87ML3_VIBPA VP2218 2218 1-165 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002810966 e7oseA2 002992860 Q87ML3_nD2 Q87ML3 Q87ML3_VIBPA VP2218 2218 166-390 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002810966 e7oseA2 002992861 Q87ML3_nD3 Q87ML3 Q87ML3_VIBPA VP2218 2218 391-515,616-645 f a.10 3843 3843.1 3843.1.1 alpha complex topology NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K 002741275 e7d3uC1 002992862 Q87ML3_nD4 Q87ML3 Q87ML3_VIBPA VP2218 2218 516-615 f a.5 5090 5090.1 5090.1.1 beta complex topology Viral glycoprotein, central and dimerisation domains-like Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains 000185560 e3u2gA2 002992863 Q87GV3_nD1 Q87GV3 Q87GV3_VIBPA VPA1212 ATPase 4291 21-175 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 001206502 e2i0mA3 002992864 Q87R89_nD1 Q87R89 Q87R89_VIBPA VP0908 908 6-255 f a.10 5076 5076.2 5076.2.1 alpha complex topology Mitochondrial ADP/ATP carrier-like Putative sulfate permease CysZ Putative sulfate permease CysZ 001146560 e3tx3A1 002992865 Q87HB5_nD1 Q87HB5 Q87HB5_VIBPA VPA1050 Cell division protein FtsL 4129 36-75 f a.21 5027 5027.1 5027.1.1 extended segments Preprotein translocase SecE subunit Preprotein translocase SecE subunit Preprotein translocase SecE subunit 000399741 e3nmdC1 002992866 Q87GC9_nD2 Q87GC9 Q87GC9_VIBPA VPA1388 CRISPR-associated protein Csy2 4467 391-635 f a.11 304 304.158 304.158.1 a+b two layers Alpha-beta plaits CRISPR system Cas5 homologs CRISPR system Cas5 homologs 002593110 e6vqxC1 002992867 Q87GC9_nD1 Q87GC9 Q87GC9_VIBPA VPA1388 CRISPR-associated protein Csy2 4467 36-375 f a.14 3576 3576.2 3576.2.1 a+b complex topology Cas8-like Cas8f/Csy1 Cas8f/Csy1 002704945 e7jzxA1 002992868 Q87HL4_nD2 Q87HL4 Q87HL4_VIBPA VPA0949 4028 41-60,116-265 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002992869 Q87HL4_nD1 Q87HL4 Q87HL4_VIBPA VPA0949 4028 1-40,61-115,266-345 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001684989 e4ywoA1 002992870 Q87HL4_nD4 Q87HL4 Q87HL4_VIBPA VPA0949 4028 466-565 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 001778171 e3nt6A2 002992871 Q87HL4_nD3 Q87HL4 Q87HL4_VIBPA VPA0949 4028 346-465 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 001778173 e3nt6A4 002992872 Q87RT2_nD2 Q87RT2 RLMM_VIBPA VP0695 rlmM Ribosomal RNA large subunit methyltransferase M 695 71-175 f a.11 4143 4143.1 4143.1.1 a+b two layers THUMP domain-like THUMP domain-like THUMP domain-like 001148171 e4atnA2 002992873 Q87RT2_nD1 Q87RT2 RLMM_VIBPA VP0695 rlmM Ribosomal RNA large subunit methyltransferase M 695 1-70 f a.11 304 304.120 304.120.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in ThiI Ferredoxin-like domain in ThiI 000991579 e4b17A2 002992874 Q87RT2_nD3 Q87RT2 RLMM_VIBPA VP0695 rlmM Ribosomal RNA large subunit methyltransferase M 695 176-355 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000991578 e4b17A1 002992875 Q87R02_nD1 Q87R02 Q87R02_VIBPA VP0996 996 46-70 f 002992876 Q87R02_nD2 Q87R02 Q87R02_VIBPA VP0996 996 166-250 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001866043 e4q1zA1 002992877 Q87R02_nD4 Q87R02 Q87R02_VIBPA VP0996 996 251-340,466-475 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001397034 e2zyrA1 002992878 Q87R02_nD3 Q87R02 Q87R02_VIBPA VP0996 996 36-45,71-155,341-485 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001397034 e2zyrA1 002992879 Q87RE6_nD1 Q87RE6 Q87RE6_VIBPA VP0851 851 1-255 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 002817087 e7kypF1 002992880 Q87FL7_nD1 Q87FL7 Q87FL7_VIBPA VPA1662 4741 31-285 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002552697 e6knhA1 002992881 Q87FL7_nD2 Q87FL7 Q87FL7_VIBPA VPA1662 4741 11-30,286-400 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002552698 e6knhA2 002992882 Q87G26_nD1 Q87G26 Q87G26_VIBPA VPA1491 Cation tolerance protein CutA 4570 26-135 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000388474 e3kygB2 002992883 Q87G26_nD2 Q87G26 Q87G26_VIBPA VPA1491 Cation tolerance protein CutA 4570 136-240 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000000077 e2rdeA1 002992884 Q87LR7_nD1 Q87LR7 Q87LR7_VIBPA VP2544 2544 1-295 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001891867 e5ks8C1 002992885 Q87LR7_nD2 Q87LR7 Q87LR7_VIBPA VP2544 2544 296-405 f a.6 103 103.5 103.5.1 alpha arrays RuvA-C post-HMGL domain-like post-HMGL domain-like 001650191 e2nx9B3 002992886 Q87LR7_nD5 Q87LR7 Q87LR7_VIBPA VP2544 2544 511-595 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 000299272 e2evbA1 002992887 Q87LR7_nD3 Q87LR7 Q87LR7_VIBPA VP2544 2544 406-455 f a.6 103 103.5 103.5.1 alpha arrays RuvA-C post-HMGL domain-like post-HMGL domain-like 001650190 e2nx9B2 002992888 Q87LR7_nD4 Q87LR7 Q87LR7_VIBPA VP2544 2544 476-505 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001826978 e4zmhA1 002992889 Q87I83_nD1 Q87I83 Q87I83_VIBPA VPA0723 Type II secretion protein 3802 21-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000143962 e3snkA1 002992890 Q87I83_nD2 Q87I83 Q87I83_VIBPA VPA0723 Type II secretion protein 3802 136-395 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000422930 e3zq6D1 002992891 Q87N39_nD3 Q87N39 DNAE2_VIBPA VP2036 dnaE2 Error-prone DNA polymerase 2036 526-740 f a.6 3584 3584.1 3584.1.1 alpha arrays DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain 001312439 e3f2bA4 002992892 Q87N39_nD4 Q87N39 DNAE2_VIBPA VP2036 dnaE2 Error-prone DNA polymerase 2036 741-905 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001117591 e2hpiA4 002992893 Q87N39_nD1 Q87N39 DNAE2_VIBPA VP2036 dnaE2 Error-prone DNA polymerase 2036 1-250 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000980711 e4gx8B1 002992894 Q87N39_nD2 Q87N39 DNAE2_VIBPA VP2036 dnaE2 Error-prone DNA polymerase 2036 251-525 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002132558 e5lewA3 002992895 Q87N39_nD5 Q87N39 DNAE2_VIBPA VP2036 dnaE2 Error-prone DNA polymerase 2036 906-1010 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002429315 e6i52B1 002992896 Q87K17_nD1 Q87K17 Q87K17_VIBPA VPA0081 Alpha/beta hydrolase 3160 6-300 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002822995 e7dwcB1 002992897 Q87LF6_nD1 Q87LF6 Q87LF6_VIBPA VP2656 Endoribonuclease L-PSP 2655 1-129 f a.12 301 301.7 301.7.1 a+b three layers Bacillus chorismate mutase-like YjgF-like YjgF-like 000143499 e3quwA1 002992898 Q87QV4_nD1 Q87QV4 CMOA_VIBPA VP1045 cmoA Carboxy-S-adenosyl-L-methionine synthase 1045 6-245 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001901139 e4gekA1 002992899 Q87FE7_nD1 Q87FE7 Q87FE7_VIBPA VPA1732 4811 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001095677 e4l4uA2 002992900 Q87FE7_nD2 Q87FE7 Q87FE7_VIBPA VPA1732 4811 141-275 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001711669 e2xszE3 002992901 Q87FE7_nD3 Q87FE7 Q87FE7_VIBPA VPA1732 4811 276-355 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001123119 e4lzzE1 002992902 Q87FE7_nD4 Q87FE7 Q87FE7_VIBPA VPA1732 4811 356-400 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002992903 Q87RU3_nD1 Q87RU3 NUSB_VIBPA VP0683 nusB Transcription antitermination protein NusB 683 6-150 f a.10 195 195.1 195.1.1 alpha complex topology NusB-like NusB-like NusB-like 000169939 e3d3bA1 002992904 Q87M67_nD1 Q87M67 Q87M67_VIBPA VP2391 GGACT domain-containing protein 2391 1-180 f a.11 810 810.1 810.1.1 a+b two layers BtrG-like (Pfam 03674) BtrG-like (Pfam 03674) BtrG-like (Pfam 03674) 001933301 e5hwiA1 002992905 Q87Q35_nD2 Q87Q35 Q87Q35_VIBPA VP1315 1315 201-400 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004912 e1pw4A2 002992906 Q87Q35_nD1 Q87Q35 Q87Q35_VIBPA VP1315 1315 6-200 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001139701 e4ikvA1 002992907 Q87IE8_nD1 Q87IE8 Q87IE8_VIBPA VPA0658 3737 6-310 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 001921594 e5b58A1 002992908 Q87MH6_nD1 Q87MH6 Q87MH6_VIBPA VP2279 Arsenate reductase 2279 1-115 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000143055 e3rdwA1 002992909 Q87LJ3_nD1 Q87LJ3 Y2619_VIBPA VP2619 UPF0235 protein VP2619 2618 1-95 f a.11 306 306.4 306.4.1 a+b two layers Glucose permease domain IIB-like YggU-like YggU-like 000068018 e1n91A1 002992910 Q87MD6_nD3 Q87MD6 GLND_VIBPA VP2320 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme 2320 331-610 f a.10 131 131.2 131.2.1 alpha complex topology PDEase-like Poly A polymerase C-terminal region-like Poly A polymerase C-terminal region-like 000061499 e1miyA1 002992911 Q87MD6_nD4 Q87MD6 GLND_VIBPA VP2320 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme 2320 616-685 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002814206 e7qe7O1 002992912 Q87MD6_nD2 Q87MD6 GLND_VIBPA VP2320 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme 2320 171-325 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002992913 Q87MD6_nD5 Q87MD6 GLND_VIBPA VP2320 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme 2320 671-795 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001143814 e3w7bA1 002992914 Q87MD6_nD1 Q87MD6 GLND_VIBPA VP2320 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme 2320 1-170 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001179387 e3k7dA3 002992915 Q87MD6_nD6 Q87MD6 GLND_VIBPA VP2320 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme 2320 796-874 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005250 e1u8sA2 002992916 Q87QZ5_nD1 Q87QZ5 Q87QZ5_VIBPA VP1003 1003 1-268 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 000007878 e1akoA1 002992917 Q87S80_nD2 Q87S80 ANMK_VIBPA VP0544 anmK Anhydro-N-acetylmuramic acid kinase 544 161-320 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000167754 e3cqyA1 002992918 Q87S80_nD1 Q87S80 ANMK_VIBPA VP0544 anmK Anhydro-N-acetylmuramic acid kinase 544 6-160,321-370 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000411876 e3qbxB1 002992919 Q87NZ7_nD2 Q87NZ7 ECTB_VIBPA VP1721 ectB Diaminobutyrate--2-oxoglutarate transaminase 1721 311-415 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001488538 e4uoxD2 002992920 Q87NZ7_nD1 Q87NZ7 ECTB_VIBPA VP1721 ectB Diaminobutyrate--2-oxoglutarate transaminase 1721 6-310 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002594990 e6rl5G2 002992921 Q87FV9_nD1 Q87FV9 Q87FV9_VIBPA VPA1569 4648 1-195 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002499446 e5zolA1 002992922 Q87Q76_nD3 Q87Q76 HUTU_VIBPA VP1274 hutU Urocanate hydratase 1274 351-565 f a.11 321 321.2 321.2.1 a+b two layers Glutamine synthetase-like C-terminal domain in urocanase C-terminal domain in urocanase 000005523 e1uwkA2 002992923 Q87Q76_nD1 Q87Q76 HUTU_VIBPA VP1274 hutU Urocanate hydratase 1274 11-145 f a.11 4022 4022.1 4022.1.1 a+b two layers N-terminal a+b domain in urocanase (Pfam 01175) N-terminal a+b domain in urocanase (Pfam 01175) N-terminal a+b domain in urocanase (Pfam 01175) 000004956 e1uwkA1 002992924 Q87Q76_nD2 Q87Q76 HUTU_VIBPA VP1274 hutU Urocanate hydratase 1274 146-350 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002721278 e7nedA2 002992925 Q87QW2_nD2 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 406-465,936-980 f 002992926 Q87QW2_nD5 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 616-645,816-830 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002083250 e5vo5A1 002992927 Q87QW2_nD8 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 346-360,1026-1045 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 001000632 e2zqmA1 002992928 Q87QW2_nD6 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 556-615,831-875 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002083250 e5vo5A1 002992929 Q87QW2_nD10 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 1-220,1236-1485 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000185226 e3eujA1 002992930 Q87QW2_nD9 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 286-345,1046-1125 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002992931 Q87QW2_nD7 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 646-815 f a.15 874 874.1 874.1.1 a+b duplicates or obligate multimers Smc hinge domain Smc hinge domain Smc hinge domain 001511381 e2wmmB1 002992932 Q87QW2_nD1 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 466-510,911-935 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 002642070 e6zffA1 002992933 Q87QW2_nD11 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 226-285,1126-1235 f 002992934 Q87QW2_nD3 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 361-405,986-1025 f a.7 3755 3755.4 3755.4.1 alpha bundles YscO-like Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 002537293 e6pyrB1 002992935 Q87QW2_nD4 Q87QW2 MUKB_VIBPA VP1037 mukB Chromosome partition protein MukB 1037 511-555,876-910 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002992936 Q87L30_nD1 Q87L30 Q87L30_VIBPA VP2786 kefG Glutathione-regulated potassium-efflux system ancillary protein KefG 2785 6-195 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 001891997 e5lvaA1 002992937 Q87MD1_nD1 Q87MD1 Q87MD1_VIBPA VP2325 DUF3301 domain-containing protein 2325 6-99 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001678533 e5boiA2 002992938 Q87PP5_nD1 Q87PP5 BCCT1_VIBPA VP1456 Glycine betaine/proline/choline/ectoine transporter VP1456 1456 41-560 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 001108697 e4c7rA1 002992939 Q87NQ4_nD2 Q87NQ4 Q87NQ4_VIBPA VP1814 DUF3159 domain-containing protein 1814 91-160 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001165444 e3wkvA3 002992940 Q87NQ4_nD1 Q87NQ4 Q87NQ4_VIBPA VP1814 DUF3159 domain-containing protein 1814 11-85 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002414893 e6hcyB1 002992941 Q87HE3_nD3 Q87HE3 Q87HE3_VIBPA VPA1022 4101 421-490,526-600 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000315449 e2ic6B1 002992942 Q87HE3_nD4 Q87HE3 Q87HE3_VIBPA VPA1022 4101 336-420,601-695 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002992943 Q87HE3_nD2 Q87HE3 Q87HE3_VIBPA VPA1022 4101 491-525 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 002642070 e6zffA1 002992944 Q87HE3_nD5 Q87HE3 Q87HE3_VIBPA VPA1022 4101 261-335,696-780 f 002992945 Q87HE3_nD1 Q87HE3 Q87HE3_VIBPA VPA1022 4101 1-260,781-1015 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002043261 e1w1wD1 002992946 Q87NT2_nD1 Q87NT2 Q87NT2_VIBPA VP1786 VOC family protein 1786 1-85 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001548760 e4z04A1 002992947 Q87HM1_nD1 Q87HM1 Q87HM1_VIBPA VPA0942 Endo/exonuclease/phosphatase domain-containing protein 4021 21-293 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 002633973 e6rw0A1 002992948 Q87NT9_nD1 Q87NT9 Q87NT9_VIBPA VP1779 1779 6-248 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 002584133 e6vtvB1 002992949 Q87FZ6_nD1 Q87FZ6 Q87FZ6_VIBPA VPA1524 PepSY domain-containing protein 4603 11-65,136-230,376-415,441-460 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 001168145 e4gd3B2 002992950 Q87FZ6_nD2 Q87FZ6 Q87FZ6_VIBPA VPA1524 PepSY domain-containing protein 4603 66-135,251-375 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001170463 e4exrA4 002992951 Q87M79_nD1 Q87M79 Q87M79_VIBPA VP2379 2379 6-75 f a.7 3502 3502.1 3502.1.1 alpha bundles uncharacterized conserved protein uncharacterized conserved protein uncharacterized conserved protein 000185221 e3ermA1 002992952 Q87FD3_nD1 Q87FD3 Q87FD3_VIBPA VPA1746 Peptidase E 4825 1-220 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000135813 e3en0A1 002992953 Q87G44_nD3 Q87G44 Q87G44_VIBPA VPA1473 DUF1722 domain-containing protein 4552 236-305 f a.6 108 108.1 108.1.1 alpha arrays EF-hand EF-hand-related EF-hand 002319269 e5oaoA1 002992954 Q87G44_nD1 Q87G44 Q87G44_VIBPA VPA1473 DUF1722 domain-containing protein 4552 6-155,306-315 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 000327610 e2ohgA1 002992955 Q87G44_nD2 Q87G44 Q87G44_VIBPA VPA1473 DUF1722 domain-containing protein 4552 156-235 f a.7 196 196.1 196.1.1 alpha bundles Regulator of G-protein signaling, RGS Regulator of G-protein signaling, RGS Regulator of G-protein signaling, RGS 001565308 e4yhjA2 002992956 Q87Q57_nD1 Q87Q57 Q87Q57_VIBPA VP1293 AEC family transporter 1293 6-290 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001725977 e5bz3A1 002992957 Q87M83_nD1 Q87M83 Q87M83_VIBPA VP2375 recC RecBCD enzyme subunit RecC 2375 1-825 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009718 e1w36C2 002992958 Q87M83_nD2 Q87M83 Q87M83_VIBPA VP2375 recC RecBCD enzyme subunit RecC 2375 831-1160 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000011033 e1w36C3 002992959 Q87M15_nD1 Q87M15 Q87M15_VIBPA VP2443 DUF2541 family protein 2443 31-145 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001068680 e4kncB2 002992960 Q87S54_nD1 Q87S54 Q87S54_VIBPA VP0570 Phosphate regulon sensor protein PhoR 570 6-55 f a.19 4120 4120.1 4120.1.1 few secondary structure elements Tim10/DDP Tim10/DDP Tim10/DDP 000007962 e2bskA1 002992961 Q87S54_nD2 Q87S54 Q87S54_VIBPA VP0570 Phosphate regulon sensor protein PhoR 570 91-210 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002710376 e6ph4B3 002992962 Q87S54_nD3 Q87S54 Q87S54_VIBPA VP0570 Phosphate regulon sensor protein PhoR 570 211-270 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001392670 e4i5sB3 002992963 Q87S54_nD4 Q87S54 Q87S54_VIBPA VP0570 Phosphate regulon sensor protein PhoR 570 276-430 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001681518 e4u7oA1 002992964 Q87HV2_nD3 Q87HV2 Q87HV2_VIBPA VPA0854 OLD-like_TOPRIM domain-containing protein 3933 481-515 f a.6 7105 7105.1 7105.1.1 alpha arrays Helical domain in class 2 OLD protein Helical domain in class 2 OLD protein Helical domain in class 2 OLD protein 002581353 e6njwA2 002992965 Q87HV2_nD1 Q87HV2 Q87HV2_VIBPA VPA0854 OLD-like_TOPRIM domain-containing protein 3933 1-370 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001900837 e1e69E1 002992966 Q87HV2_nD2 Q87HV2 Q87HV2_VIBPA VPA0854 OLD-like_TOPRIM domain-containing protein 3933 371-540 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 002581352 e6njwA1 002992967 Q87TJ4_nD1 Q87TJ4 Q87TJ4_VIBPA VP0075 75 1-285 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002992968 Q87SB0_nD3 Q87SB0 Q87SB0_VIBPA VP0514 514 311-385 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001160041 e1ojlD5 002992969 Q87SB0_nD4 Q87SB0 Q87SB0_VIBPA VP0514 514 391-440 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002992970 Q87SB0_nD1 Q87SB0 Q87SB0_VIBPA VP0514 514 1-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000169532 e3dzdA3 002992971 Q87SB0_nD2 Q87SB0 Q87SB0_VIBPA VP0514 514 141-310 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002072960 e5m7pB2 002992972 Q87JK7_nD1 Q87JK7 Q87JK7_VIBPA VPA0242 OMP_b-brl domain-containing protein 3321 26-183 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002992973 Q87PR3_nD2 Q87PR3 Q87PR3_VIBPA VP1438 1438 211-465 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001123736 e4bgaC1 002992974 Q87PR3_nD1 Q87PR3 Q87PR3_VIBPA VP1438 1438 6-210 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001117758 e4fo0A1 002992975 Q87PR3_nD3 Q87PR3 Q87PR3_VIBPA VP1438 1438 466-605 f a.3 511 511.1 511.1.1 beta sandwiches Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain 001919146 e5tkyA2 002992976 Q87PR3_nD4 Q87PR3 Q87PR3_VIBPA VP1438 1438 621-930 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002555653 e6sa7B1 002992977 Q87LZ9_nD1 Q87LZ9 Q87LZ9_VIBPA VP2460 Protein-export membrane protein SecG 2460 1-30,51-75 f a.7 3660 3660.1 3660.1.1 alpha bundles Protein-export membrane protein secG Protein-export membrane protein secG Protein-export membrane protein secG 001003294 e3dl8F1 002992978 Q87LK9_nD1 Q87LK9 Q87LK9_VIBPA VP2602 2601 36-165 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001760805 e2hdiA2 002992979 Q87LK9_nD2 Q87LK9 Q87LK9_VIBPA VP2602 2601 26-35,166-650 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002162200 e5m9bA1 002992980 Q87T39_nD1 Q87T39 Q87T39_VIBPA VP0231 231 1-178 f a.14 7012 7012.1 7012.1.1 a+b complex topology Monotopic phosphoglycosyl transferase (PGT)-like Monotopic phosphoglycosyl transferase (PGT)-like Monotopic phosphoglycosyl transferase (PGT)-like 002394604 e5w7lB1 002992981 Q87QE7_nD1 Q87QE7 Q87QE7_VIBPA VP1202 1202 6-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104669 e1yioA2 002992982 Q87QE7_nD2 Q87QE7 Q87QE7_VIBPA VP1202 1202 131-195 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 000002762 e1yioA1 002992983 Q87QF0_nD1 Q87QF0 Q87QF0_VIBPA VP1199 1199 216-360 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000098571 e1e6eA1 002992984 Q87QF0_nD2 Q87QF0 Q87QF0_VIBPA VP1199 1199 6-215,361-580 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002127447 e4usqA1 002992985 Q87FD9_nD1 Q87FD9 Q87FD9_VIBPA VPA1740 mpaA Murein peptide amidase A 4819 6-235 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 000152729 e4axvA1 002992986 Q87PS8_nD1 Q87PS8 Q87PS8_VIBPA VP1423 Hydrolase 1423 11-225 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 002429649 e5z7cA2 002992987 Q87PS8_nD2 Q87PS8 Q87PS8_VIBPA VP1423 Hydrolase 1423 226-420 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 001503459 e4r8zA1 002992988 Q87H74_nD1 Q87H74 Q87H74_VIBPA VPA1091 Peptidase 4170 26-213 f a.5 4091 4091.1 4091.1.1 beta complex topology L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like 002722109 e6xj7A2 002992989 Q87I18_nD1 Q87I18 Q87I18_VIBPA VPA0788 Phospholipase A1 3867 46-310 f a.1 5084 5084.4 5084.4.1 beta barrels Outer membrane meander beta-barrels Outer membrane phospholipase A (OMPLA) Outer membrane phospholipase A (OMPLA) 000028412 e1qd5A1 002992990 Q87GN9_nD2 Q87GN9 Q87GN9_VIBPA VPA1276 4355 126-235 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001148332 e4knyB4 002992991 Q87GN9_nD1 Q87GN9 Q87GN9_VIBPA VPA1276 4355 6-125 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002992992 Q87R54_nD1 Q87R54 Q87R54_VIBPA VP0944 944 21-190 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002992993 Q87FY2_nD3 Q87FY2 Q87FY2_VIBPA VPA1538 4617 296-375 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001160041 e1ojlD5 002992994 Q87FY2_nD4 Q87FY2 Q87FY2_VIBPA VPA1538 4617 376-435 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002992995 Q87FY2_nD1 Q87FY2 Q87FY2_VIBPA VPA1538 4617 1-125 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002072962 e5m7pB4 002992996 Q87FY2_nD2 Q87FY2 Q87FY2_VIBPA VPA1538 4617 126-295 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002598028 e6lufB2 002992997 Q87RM1_nD1 Q87RM1 Q87RM1_VIBPA VP0757 Copper amine oxidase 757 21-145 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002472947 e6eezB1 002992998 Q87NI3_nD1 Q87NI3 Q87NI3_VIBPA VP1885 MBL fold metallo-hydrolase 1885 6-40 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 000384812 e3kxeB1 002992999 Q87QT9_nD1 Q87QT9 TOLB_VIBPA VP1060 tolB Tol-Pal system protein TolB 1060 36-160 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 002516503 e6pnvA1 002993000 Q87QT9_nD2 Q87QT9 TOLB_VIBPA VP1060 tolB Tol-Pal system protein TolB 1060 26-35,161-450 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 000043453 e1crzA1 002993001 Q87N16_nD1 Q87N16 NTPPB_VIBPA VP2060 7-methyl-GTP pyrophosphatase 2060 1-193 f a.17 7504 7504.1 7504.1.1 a/b three-layered sandwiches ITPase-like ITPase-like ITPase-like 000223678 e4jhcA1 002993002 Q87L78_nD1 Q87L78 ALR_VIBPA VP2734 alr Alanine racemase 2733 6-235 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001699844 e4wr3A1 002993003 Q87L78_nD2 Q87L78 ALR_VIBPA VP2734 alr Alanine racemase 2733 236-355 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001699845 e4wr3A2 002993004 Q87S72_nD2 Q87S72 Q87S72_VIBPA VP0552 552 481-648 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 000007425 e1qsaA2 002993005 Q87S72_nD1 Q87S72 Q87S72_VIBPA VP0552 552 36-480 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004548 e1qsaA1 002993006 Q87IY7_nD1 Q87IY7 Q87IY7_VIBPA VPA0469 Porin 3548 36-263 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002993007 Q87RJ9_nD1 Q87RJ9 Q87RJ9_VIBPA VP0795 795 1-80 f a.11 322 322.1 322.1.1 a+b two layers HPr-like HPr-like HPr-like 000063685 e1vrcC1 002993008 Q87MG0_nD1 Q87MG0 GLO2_VIBPA VP2295 gloB Hydroxyacylglutathione hydrolase 2295 1-250 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 002647470 e6rz0A1 002993009 Q87PC0_nD3 Q87PC0 RLMKL_VIBPA VP1597 rlmL Ribosomal RNA large subunit methyltransferase K/L 1597 161-390 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002074656 e3v97A1 002993010 Q87PC0_nD4 Q87PC0 RLMKL_VIBPA VP1597 rlmL Ribosomal RNA large subunit methyltransferase K/L 1597 396-705 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002074657 e3v97A2 002993011 Q87PC0_nD2 Q87PC0 RLMKL_VIBPA VP1597 rlmL Ribosomal RNA large subunit methyltransferase K/L 1597 61-160 f a.11 4143 4143.1 4143.1.1 a+b two layers THUMP domain-like THUMP domain-like THUMP domain-like 002074658 e3v97A3 002993012 Q87PC0_nD1 Q87PC0 RLMKL_VIBPA VP1597 rlmL Ribosomal RNA large subunit methyltransferase K/L 1597 1-60 f a.11 304 304.120 304.120.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in ThiI Ferredoxin-like domain in ThiI 002074659 e3v97A4 002993013 Q87M41_nD2 Q87M41 Q87M41_VIBPA VP2417 Tad domain-containing protein 2417 51-170 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001137424 e4ixjB1 002993014 Q87M41_nD1 Q87M41 Q87M41_VIBPA VP2417 Tad domain-containing protein 2417 26-50 f a.21 5027 5027.1 5027.1.1 extended segments Preprotein translocase SecE subunit Preprotein translocase SecE subunit Preprotein translocase SecE subunit 002705663 e7kamC1 002993015 Q87M41_nD3 Q87M41 Q87M41_VIBPA VP2417 Tad domain-containing protein 2417 243-284,317-333,356-400 f 002993016 Q87MB8_nD5 Q87MB8 Q87MB8_VIBPA VP2338 2338 336-425 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002321592 e3pddA3 002993017 Q87MB8_nD2 Q87MB8 Q87MB8_VIBPA VP2338 2338 86-175 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002321592 e3pddA3 002993018 Q87MB8_nD6 Q87MB8 Q87MB8_VIBPA VP2338 2338 431-520 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000433660 e3pdgA1 002993019 Q87MB8_nD1 Q87MB8 Q87MB8_VIBPA VP2338 2338 21-80 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001240751 e4mb3A8 002993020 Q87MB8_nD4 Q87MB8 Q87MB8_VIBPA VP2338 2338 276-335 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001324916 e4ny2B1 002993021 Q87MB8_nD7 Q87MB8 Q87MB8_VIBPA VP2338 2338 521-845 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001694868 e4tx8A2 002993022 Q87MB8_nD3 Q87MB8 Q87MB8_VIBPA VP2338 2338 176-265 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002321592 e3pddA3 002993023 Q87JR9_nD1 Q87JR9 Q87JR9_VIBPA VPA0179 dTDP-glucose 4,6-dehydratase 3258 66-678 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 001764931 e4a9vA1 002993024 Q87KD4_nD2 Q87KD4 FMT_VIBPA VP3043 fmt Methionyl-tRNA formyltransferase 3042 211-315 f a.1 270 270.1 270.1.1 beta barrels FMT C-terminal domain-like FMT C-terminal domain-related FMT C-terminal domain-related 000142970 e3r8xA1 002993025 Q87KD4_nD1 Q87KD4 FMT_VIBPA VP3043 fmt Methionyl-tRNA formyltransferase 3042 6-210 f a.17 7571 7571.1 7571.1.1 a/b three-layered sandwiches Formyltransferase Formyltransferase Formyltransferase 001953468 e5uaiC1 002993026 Q87QD6_nD1 Q87QD6 Q87QD6_VIBPA VP1213 Peptidase 1213 41-135 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001170463 e4exrA4 002993027 Q87PU0_nD2 Q87PU0 Q87PU0_VIBPA VP1411 FHA domain-containing protein 1411 361-440,486-500 f a.7 4006 4006.1 4006.1.1 alpha bundles Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain 000003617 e1gqeA1 002993028 Q87PU0_nD1 Q87PU0 Q87PU0_VIBPA VP1411 FHA domain-containing protein 1411 1-110 f a.3 73 73.1 73.1.1 beta sandwiches SMAD/FHA domain SMAD/FHA domain SMAD/FHA domain 000171832 e2kfuA1 002993029 Q87PU0_nD3 Q87PU0 Q87PU0_VIBPA VP1411 FHA domain-containing protein 1411 441-485 f a.8 3443 3443.1 3443.1.1 alpha duplicates or obligate multimers Get5 carboxyl domain Get5 carboxyl domain Get5 carboxyl domain 001501417 e4x86A1 002993030 Q87LG2_nD1 Q87LG2 Q87LG2_VIBPA VP2650 rraB Regulator of ribonuclease activity B 2649 1-130 f a.11 304 304.13 304.13.1 a+b two layers Alpha-beta plaits Hypothetical protein VC0424 Hypothetical protein VC0424 000005278 e1nxiA1 002993031 Q87GB0_nD1 Q87GB0 Q87GB0_VIBPA VPA1407 Capsular biosynthesis protein 4486 41-295 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001954698 e5t03B2 002993032 Q87QI6_nD3 Q87QI6 Q87QI6_VIBPA VP1163 1163 501-579 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 001684834 e5awoA2 002993033 Q87QI6_nD2 Q87QI6 Q87QI6_VIBPA VP1163 1163 171-500 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001918390 e5m1iA2 002993034 Q87QI6_nD1 Q87QI6 Q87QI6_VIBPA VP1163 1163 1-170 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 002403283 e6gvdA2 002993035 Q87JU1_nD2 Q87JU1 Q87JU1_VIBPA VPA0157 Peptidase 3236 6-40,141-205 f a.19 174 174.1 174.1.1 few secondary structure elements Tetraspanin transmembrane domain Tetraspanin transmembrane domain Tetraspanin transmembrane domain 002673302 e6wvgA2 002993036 Q87JU1_nD1 Q87JU1 Q87JU1_VIBPA VPA0157 Peptidase 3236 46-140 f a.12 881 881.1 881.1.1 a+b three layers Mog1p/PsbP-like Mog1p/PsbP-like Mog1p/PsbP-like 001824149 e1tu1B2 002993037 Q87MW8_nD1 Q87MW8 Q87MW8_VIBPA VP2108 nth Endonuclease III 2108 1-210 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 000048277 e2abkA1 002993038 Q87HV4_nD3 Q87HV4 Q87HV4_VIBPA VPA0852 3931 161-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002993039 Q87HV4_nD2 Q87HV4 Q87HV4_VIBPA VPA0852 3931 81-160,271-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002993040 Q87HV4_nD1 Q87HV4 Q87HV4_VIBPA VPA0852 3931 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002993041 Q87GL2_nD1 Q87GL2 Q87GL2_VIBPA VPA1303 Chromosome partitioning protein ParA 4382 36-180 f a.6 5000 5000.2 5000.2.1 alpha arrays Toxins' membrane translocation domains Diphtheria toxin, middle domain Diphtheria toxin, middle domain 000003308 e1f0lA2 002993042 Q87RB0_nD1 Q87RB0 Q87RB0_VIBPA VP0887 Outer membrane lipoprotein carrier protein LolA 887 16-205 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 000137630 e2w7qA1 002993043 Q87TD9_nD1 Q87TD9 Q87TD9_VIBPA VP0131 Heat shock protein 15 131 6-105 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 000006217 e1dm9A1 002993044 Q87QG6_nD1 Q87QG6 Q87QG6_VIBPA VP1183 clsA Cardiolipin synthase A 1183 1-60 f a.6 4085 4085.1 4085.1.1 alpha arrays RbcX-like RbcX-like RbcX-like 000142193 e3q20A1 002993045 Q87QG6_nD2 Q87QG6 Q87QG6_VIBPA VP1183 clsA Cardiolipin synthase A 1183 76-295 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000011372 e1v0wA1 002993046 Q87QG6_nD3 Q87QG6 Q87QG6_VIBPA VP1183 clsA Cardiolipin synthase A 1183 66-100,296-480 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 001165491 e2ze9A2 002993047 Q87SH7_nD1 Q87SH7 Q87SH7_VIBPA VP0446 446 31-110 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 002810762 e6xmvA2 002993048 Q87SH7_nD2 Q87SH7 Q87SH7_VIBPA VP0446 446 116-185 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 002755278 e6v4vA1 002993049 Q87TR7_nD1 Q87TR7 Q87TR7_VIBPA VP0001 1 1-144 f a.17 2007 2007.2 2007.2.1 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Flavoproteins 002036600 e5b3kA1 002993050 Q87GW7_nD1 Q87GW7 Q87GW7_VIBPA VPA1198 napD Chaperone NapD 4277 6-80 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001234917 e2jsxA2 002993051 Q87HN0_nD1 Q87HN0 Q87HN0_VIBPA VPA0933 BOF domain-containing protein 4012 36-123 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000384 e1nnxA1 002993052 Q87Q16_nD2 Q87Q16 Q87Q16_VIBPA VP1333 1334 106-300 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002628032 e6t3eB2 002993053 Q87Q16_nD1 Q87Q16 Q87Q16_VIBPA VP1333 1334 1-105,301-320 f a.11 3692 3692.1 3692.1.1 a+b two layers Ornithine cyclodeaminase-like enzymes dimerization domain Ornithine cyclodeaminase-like enzymes dimerization domain Ornithine cyclodeaminase-like enzymes dimerization domain 002628031 e6t3eB1 002993054 Q87Q02_nD2 Q87Q02 Q87Q02_VIBPA VP1348 1348 176-285 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 000133888 e3gb0A2 002993055 Q87Q02_nD1 Q87Q02 Q87Q02_VIBPA VP1348 1348 6-175,286-368 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 000133887 e3gb0A1 002993056 O51859_nD4 O51859 GYRB_VIBPA VP0014 gyrB DNA gyrase subunit B 14 566-730 f a.14 3675 3675.1 3675.1.1 a+b complex topology DNA gyrase subunit B insertion domain DNA gyrase subunit B insertion domain DNA gyrase subunit B insertion domain 002549329 e6rkwB3 002993057 O51859_nD3 O51859 GYRB_VIBPA VP0014 gyrB DNA gyrase subunit B 14 401-560,731-800 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 002126504 e4gfhA6 002993058 O51859_nD2 O51859 GYRB_VIBPA VP0014 gyrB DNA gyrase subunit B 14 221-395 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002549328 e6rkwB2 002993059 O51859_nD1 O51859 GYRB_VIBPA VP0014 gyrB DNA gyrase subunit B 14 6-220 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006552 e1ei1A2 002993060 Q87FV5_nD1 Q87FV5 Q87FV5_VIBPA VPA1573 N-acetyltransferase domain-containing protein 4652 1-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001141836 e1yleA1 002993061 Q87Q46_nD1 Q87Q46 COBT_VIBPA VP1304 cobT Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1304 1-335 f a.17 7553 7553.1 7553.1.1 a/b three-layered sandwiches Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 000278008 e1wx1B1 002993062 Q87MW5_nD1 Q87MW5 Q87MW5_VIBPA VP2116 DsbA family protein 2116 1-205 f a.6 3009 3009.1 3009.1.1 alpha arrays Insertion subdomain in DsbA-like Insertion subdomain in DsbA-like Insertion subdomain in DsbA-like 001812371 e3kzqB2 002993063 Q87KU7_nD2 Q87KU7 ACSA_VIBPA VP2878 acsA Acetyl-coenzyme A synthetase 2877 251-515 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 001203801 e2p20A5 002993064 Q87KU7_nD1 Q87KU7 ACSA_VIBPA VP2878 acsA Acetyl-coenzyme A synthetase 2877 6-250 f a.17 7584 7584.1 7584.1.1 a/b three-layered sandwiches Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins Rossmann-like domain in Acetyl-CoA synthetase-like proteins 000164480 e2p20A1 002993065 Q87KU7_nD3 Q87KU7 ACSA_VIBPA VP2878 acsA Acetyl-coenzyme A synthetase 2877 516-645 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 000164482 e2p20A3 002993066 Q87RA3_nD1 Q87RA3 Q87RA3_VIBPA VP0894 acpP Acyl carrier protein 894 1-85 f a.7 132 132.1 132.1.1 alpha bundles ACP-like Acyl-carrier protein (ACP) Acyl-carrier protein (ACP) 002644100 e6yj4U1 002993067 Q87NX6_nD1 Q87NX6 Q87NX6_VIBPA VP1742 Threonine transporter RhtB 1742 26-170 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001718742 e5aoqA2 002993068 Q87SH8_nD1 Q87SH8 Q87SH8_VIBPA VP0445 445 6-110 f a.1 4 4.1 4.1.2 beta barrels SH3 SH3 Stringent starvation protein B, SspB 000026412 e1ox9F1 002993069 Q87PC1_nD1 Q87PC1 Q87PC1_VIBPA VP1596 Glutaredoxin family protein 1596 1-75 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000011272 e1ttzA1 002993070 Q87ML9_nD1 Q87ML9 Q87ML9_VIBPA VP2212 2212 1-25 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001760440 e4epaA1 002993071 Q87ML9_nD2 Q87ML9 Q87ML9_VIBPA VP2212 2212 26-415 f a.1 5084 5084.5 5084.5.4 beta barrels Outer membrane meander beta-barrels Porins Outer membrane protein transport protein 000420253 e3pgsA1 002993072 Q87IV6_nD1 Q87IV6 Q87IV6_VIBPA VPA0500 3579 1-145 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000402807 e3oxpB1 002993073 Q87K32_nD2 Q87K32 Q87K32_VIBPA VPA0066 HAD family hydrolase 3145 86-190 f a.11 3012 3012.1 3012.1.1 a+b two layers Cof C2 cap domain Cof C2 cap domain Cof C2 cap domain 002075991 e3l7yA2 002993074 Q87K32_nD1 Q87K32 Q87K32_VIBPA VPA0066 HAD family hydrolase 3145 6-85,191-265 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000145103 e3r4cA1 002993075 Q87FQ8_nD2 Q87FQ8 Q87FQ8_VIBPA VPA1620 Alpha-1,4 glucan phosphorylase 4699 471-810 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717452 e2ecpB2 002993076 Q87FQ8_nD1 Q87FQ8 Q87FQ8_VIBPA VPA1620 Alpha-1,4 glucan phosphorylase 4699 11-240,261-470 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717274 e4bqeA1 002993077 Q87G23_nD1 Q87G23 Q87G23_VIBPA VPA1494 Tetratricopeptide repeat protein 4573 1-160 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001559058 e4yvoA1 002993078 Q87HN3_nD1 Q87HN3 Q87HN3_VIBPA VPA0930 Molybdenum transport system permease 4009 6-220 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000058134 e2onkD1 002993079 Q87L03_nD1 Q87L03 Q87L03_VIBPA VP2821 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE 2820 1-150 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102865 e1htwC1 002993080 Q87PI6_nD1 Q87PI6 Q87PI6_VIBPA VP1516 Transmembrane protein 1516 6-138 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000150812 e4avmA1 002993081 Q87FC9_nD2 Q87FC9 Q87FC9_VIBPA VPA1750 tmcA tRNA(Met) cytidine acetyltransferase TmcA 4829 151-355 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000317607 e2o0jA1 002993082 Q87FC9_nD1 Q87FC9 Q87FC9_VIBPA VPA1750 tmcA tRNA(Met) cytidine acetyltransferase TmcA 4829 11-150 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002781467 e7mq9NJ1 002993083 Q87FC9_nD4 Q87FC9 Q87FC9_VIBPA VPA1750 tmcA tRNA(Met) cytidine acetyltransferase TmcA 4829 601-680 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001267911 e2zpaB4 002993084 Q87FC9_nD3 Q87FC9 Q87FC9_VIBPA VPA1750 tmcA tRNA(Met) cytidine acetyltransferase TmcA 4829 341-600 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000150994 e4fd5A1 002993085 Q87PP3_nD1 Q87PP3 Q87PP3_VIBPA VP1458 Bac_transf domain-containing protein 1458 11-210 f a.14 7012 7012.1 7012.1.1 a+b complex topology Monotopic phosphoglycosyl transferase (PGT)-like Monotopic phosphoglycosyl transferase (PGT)-like Monotopic phosphoglycosyl transferase (PGT)-like 002394604 e5w7lB1 002993086 Q87MX6_nD2 Q87MX6 UVRB_VIBPA VP2100 uvrB UvrABC system protein B 2100 416-590 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002572716 e6o8eA3 002993087 Q87MX6_nD1 Q87MX6 UVRB_VIBPA VP2100 uvrB UvrABC system protein B 2100 6-415,591-670 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001544308 e1d2mA1 002993088 Q87KZ2_nD1 Q87KZ2 GPDA_VIBPA VP2832 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] 2831 11-190 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000136871 e3k96A2 002993089 Q87KZ2_nD2 Q87KZ2 GPDA_VIBPA VP2832 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] 2831 191-345 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000136870 e3k96A1 002993090 Q87LB7_nD1 Q87LB7 Q87LB7_VIBPA VP2695 2694 6-30 f a.21 5106 5106.1 5106.1.1 extended segments PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex 000321648 e2e74G1 002993091 Q87LB7_nD2 Q87LB7 Q87LB7_VIBPA VP2695 2694 36-180 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001866758 e5bw0F1 002993092 Q87IM0_nD1 Q87IM0 Q87IM0_VIBPA VPA0586 Putative_PNPOx domain-containing protein 3665 6-75 f a.11 896 896.1 896.1.1 a+b two layers SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related 001406320 e4uykA1 002993093 Q87ND2_nD1 Q87ND2 Q87ND2_VIBPA VP1936 1936 1-85 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 002759403 e7c3bC3 002993094 Q87TP9_nD3 Q87TP9 Q87TP9_VIBPA VP0020 20 421-445 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001632633 e3l4yA1 002993095 Q87TP9_nD2 Q87TP9 Q87TP9_VIBPA VP0020 20 121-420,446-690 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008805 e1mxgA2 002993096 Q87TP9_nD1 Q87TP9 Q87TP9_VIBPA VP0020 20 21-120 f a.3 3597 3597.1 3597.1.1 beta sandwiches Starch specific carbohydrate-binding modules Starch specific carbohydrate-binding modules Starch specific carbohydrate-binding modules 002060448 e5x5sA1 002993097 Q87JB8_nD1 Q87JB8 Q87JB8_VIBPA VPA0335 Redox-sensitive transcriptional activator SoxR 3414 1-125 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 002665492 e7claA1 002993098 Q87FI1_nD1 Q87FI1 Q87FI1_VIBPA VPA1698 MOSC domain-containing protein 4777 1-225 f a.1 1 1.1 1.1.15 beta barrels cradle loop barrel RIFT-related PK beta-barrel domain-like 000000091 e1o65A1 002993099 Q87HT6_nD1 Q87HT6 FABV2_VIBPA VPA0870 fabV2 Enoyl-[acyl-carrier-protein] reductase [NADH] 2 3949 6-399 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000154152 e4eueA1 002993100 Q87HT2_nD1 Q87HT2 Q87HT2_VIBPA VPA0874 DAO domain-containing protein 3953 11-470 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002993101 Q87NF9_nD1 Q87NF9 Q87NF9_VIBPA VP1909 TRAP transporter large permease protein 1909 1-425 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002993102 Q87LL5_nD1 Q87LL5 Q87LL5_VIBPA VP2596 2595 6-205 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 002142597 e5vkvA1 002993103 Q87K33_nD3 Q87K33 Q87K33_VIBPA VPA0065 3144 161-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002993104 Q87K33_nD2 Q87K33 Q87K33_VIBPA VPA0065 3144 91-160,261-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002993105 Q87K33_nD1 Q87K33 Q87K33_VIBPA VPA0065 3144 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001663571 e4x6gD2 002993106 Q87HK2_nD3 Q87HK2 Q87HK2_VIBPA VPA0961 4040 161-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002993107 Q87HK2_nD2 Q87HK2 Q87HK2_VIBPA VPA0961 4040 91-160,266-294 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002993108 Q87HK2_nD1 Q87HK2 Q87HK2_VIBPA VPA0961 4040 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002441957 e5z4zB1 002993109 Q87GR5_nD1 Q87GR5 RIBB_VIBPA VPA1250 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 4329 1-210 f a.14 297 297.1 297.1.1 a+b complex topology YrdC/RibB YrdC/RibB YrdC/RibB 001514607 e4p6pB1 002993110 Q87KA4_nD1 Q87KA4 ATPF_VIBPA VP3073 atpF ATP synthase subunit b 3072 26-135 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002330464 e6fkhb1 002993111 Q87NZ6_nD1 Q87NZ6 ECTA_VIBPA VP1722 ectA L-2,4-diaminobutyric acid acetyltransferase 1722 16-180 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002574301 e6sjyB1 002993112 P59570_nD1 P59570 OMPK_VIBPA VP2362 ompK Outer membrane protein OmpK 2362 21-265 f a.1 5084 5084.6 5084.6.1 beta barrels Outer membrane meander beta-barrels Tsx-like channel Tsx-like channel 000000898 e1tlyA1 002993113 Q87KW1_nD1 Q87KW1 Q87KW1_VIBPA VP2864 C4-dicarboxylate transporter 2863 6-310,331-435 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002993114 Q87K00_nD2 Q87K00 Q87K00_VIBPA VPA0098 3177 211-490 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002817097 e7l17A2 002993115 Q87K00_nD1 Q87K00 Q87K00_VIBPA VPA0098 3177 1-210 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680301 e4zp0A1 002993116 Q87JB3_nD1 Q87JB3 Q87JB3_VIBPA VPA0340 3419 6-195 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000142391 e2xvaA1 002993117 Q87FP6_nD1 Q87FP6 PDXY_VIBPA VPA1632 pdxY Pyridoxal kinase PdxY 4711 1-285 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000100683 e1td2B1 002993118 Q87Q64_nD1 Q87Q64 Q87Q64_VIBPA VP1286 1286 46-230,436-460 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001679995 e4y0lA1 002993119 Q87Q64_nD2 Q87Q64 Q87Q64_VIBPA VP1286 1286 6-45,231-395 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002993120 Q87Q64_nD3 Q87Q64 Q87Q64_VIBPA VP1286 1286 461-605 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002581421 e6r4lA4 002993121 Q87Q64_nD4 Q87Q64 Q87Q64_VIBPA VP1286 1286 396-435,606-770 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002816603 e7dfwA1 002993122 Q87MS7_nD1 Q87MS7 Q87MS7_VIBPA VP2154 DUF1315 family protein 2154 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000369575 e3ihuB1 002993123 Q87G30_nD1 Q87G30 Q87G30_VIBPA VPA1487 4566 1-160 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000342501 e2vi7C1 002993124 Q87RZ3_nD1 Q87RZ3 Q87RZ3_VIBPA VP0631 Class III aminotransferase 631 1-279 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000421110 e2y7eB1 002993125 Q87LV4_nD2 Q87LV4 Q87LV4_VIBPA VP2504 pcnB Poly(A) polymerase I 2504 181-425 f a.10 131 131.2 131.2.1 alpha complex topology PDEase-like Poly A polymerase C-terminal region-like Poly A polymerase C-terminal region-like 001385710 e3aqkA2 002993126 Q87LV4_nD1 Q87LV4 Q87LV4_VIBPA VP2504 pcnB Poly(A) polymerase I 2504 21-180 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001277989 e3aqlB1 002993127 Q87LK5_nD1 Q87LK5 Q87LK5_VIBPA VP2607 2606 36-260 f a.10 5076 5076.2 5076.2.1 alpha complex topology Mitochondrial ADP/ATP carrier-like Putative sulfate permease CysZ Putative sulfate permease CysZ 002330435 e6d9zC1 002993128 Q87MI5_nD1 Q87MI5 Q87MI5_VIBPA VP2270 2270 1-225 f a.11 307 307.1 307.1.1 a+b two layers Hedgehog/DD-peptidase Hedgehog/DD-peptidase Hedgehog/DD-peptidase 000068071 e1r44C1 002993129 Q87GH9_nD1 Q87GH9 Q87GH9_VIBPA VPA1337 Cytosolic protein 4416 26-85 f a.7 603 603.1 603.1.1 alpha bundles STAT-like t-snare proteins t-snare proteins 000978740 e4aj5J1 002993130 Q87T95_nD1 Q87T95 Q87T95_VIBPA VP0175 Protein PsiE 175 11-75 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001289566 e4biwB1 002993131 Q87T95_nD2 Q87T95 Q87T95_VIBPA VP0175 Protein PsiE 175 81-125 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002993132 Q87IL2_nD3 Q87IL2 Q87IL2_VIBPA VPA0594 EAL domain-containing protein 3673 236-485 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002993133 Q87IL2_nD2 Q87IL2 Q87IL2_VIBPA VPA0594 EAL domain-containing protein 3673 6-20,221-235 f a.21 3379 3379.1 3379.1.1 extended segments Photosystem II reaction center protein ycf12 Photosystem II reaction center protein ycf12 Photosystem II reaction center protein ycf12 001735859 e4yuuy21 002993134 Q87IL2_nD1 Q87IL2 Q87IL2_VIBPA VPA0594 EAL domain-containing protein 3673 21-220 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002993135 Q87K74_nD3 Q87K74 Q87K74_VIBPA VPA0024 3103 221-280 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002993136 Q87K74_nD4 Q87K74 Q87K74_VIBPA VPA0024 3103 281-320,506-545 f a.7 3755 3755.4 3755.4.1 alpha bundles YscO-like Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 002537293 e6pyrB1 002993137 Q87K74_nD1 Q87K74 Q87K74_VIBPA VPA0024 3103 6-180 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002993138 Q87K74_nD2 Q87K74 Q87K74_VIBPA VPA0024 3103 196-220 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002993139 Q87K74_nD5 Q87K74 Q87K74_VIBPA VPA0024 3103 321-505 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002325068 e5y06A1 002993140 Q87MC5_nD1 Q87MC5 RL31B_VIBPA VP2331 rpmE2 50S ribosomal protein L31 type B 2331 1-60 f a.19 4987 4987.1 4987.1.1 few secondary structure elements Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p 002392923 e6dzig1 002993141 Q87R88_nD1 Q87R88 SELO_VIBPA VP0909 selO Protein adenylyltransferase SelO 909 6-480 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 002439578 e6eacA1 002993142 Q87SA8_nD1 Q87SA8 Q87SA8_VIBPA VP0516 516 1-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008706 e1lqaA1 002993143 Q87FJ2_nD1 Q87FJ2 Q87FJ2_VIBPA VPA1687 4766 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001778133 e3hhgE3 002993144 Q87FJ2_nD2 Q87FJ2 Q87FJ2_VIBPA VPA1687 4766 86-160,266-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002993145 Q87FJ2_nD3 Q87FJ2 Q87FJ2_VIBPA VPA1687 4766 161-265,306-315 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002601336 e3mz1C1 002993146 Q87HI1_nD2 Q87HI1 Q87HI1_VIBPA VPA0984 uroporphyrinogen-III C-methyltransferase 4063 126-250 f a.11 1137 1137.1 1137.1.1 a+b two layers Tetrapyrrole methylase C-terminal domain-like Tetrapyrrole methylase C-terminal domain Tetrapyrrole methylase C-terminal domain 001937351 e1pjtB2 002993147 Q87HI1_nD1 Q87HI1 Q87HI1_VIBPA VPA0984 uroporphyrinogen-III C-methyltransferase 4063 11-125 f a.17 7550 7550.1 7550.1.1 a/b three-layered sandwiches Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain 001937456 e1s4dE1 002993148 Q87RD9_nD1 Q87RD9 Q87RD9_VIBPA VP0858 Ferrous iron transport protein B 858 1-175 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000142410 e2xtzA2 002993149 Q87RD9_nD2 Q87RD9 Q87RD9_VIBPA VP0858 Ferrous iron transport protein B 858 176-255 f a.10 3290 3290.1 3290.1.1 alpha complex topology Cytosolic helical domain in ferrous iron transport protein B Cytosolic helical domain in ferrous iron transport protein B Cytosolic helical domain in ferrous iron transport protein B 001230755 e3ibyD2 002993150 Q87RD9_nD5 Q87RD9 Q87RD9_VIBPA VP0858 Ferrous iron transport protein B 858 716-745 f a.8 7002 7002.1 7002.1.1 alpha duplicates or obligate multimers TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B 002423082 e5v2sA4 002993151 Q87RD9_nD3 Q87RD9 Q87RD9_VIBPA VP0858 Ferrous iron transport protein B 858 306-345,601-620 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002702809 e7d76R1 002993152 Q87RD9_nD4 Q87RD9 Q87RD9_VIBPA VP0858 Ferrous iron transport protein B 858 271-305,351-585,651-715,746-755 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 002060801 e5l26B1 002993153 Q87PU5_nD1 Q87PU5 Q87PU5_VIBPA VP1406 Type VI secretion system baseplate subunit TssG 1406 16-150 f a.18 2498 2498.5 2498.5.1 mixed a+b and a/b Zincin-like GroEL-intermediate domain like GroEL-intermediate domain like 001311088 e1iokF2 002993154 Q87PU5_nD2 Q87PU5 Q87PU5_VIBPA VP1406 Type VI secretion system baseplate subunit TssG 1406 151-305,331-343 f a.11 327 327.2 327.2.1 a+b two layers Alpha-lytic protease prodomain-like BolA-like BolA-like 000170037 e2kdnA1 002993155 Q87MT7_nD1 Q87MT7 Q87MT7_VIBPA VP2144 2144 1-84 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001185976 e2wiuD2 002993156 Q87PT1_nD1 Q87PT1 Q87PT1_VIBPA VP1420 FTH domain-containing protein 1420 31-90 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002526305 e6a4cA2 002993157 Q87PT1_nD2 Q87PT1 Q87PT1_VIBPA VP1420 FTH domain-containing protein 1420 91-160 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002559857 e6a4cA1 002993158 Q87JU6_nD2 Q87JU6 Q87JU6_VIBPA VPA0152 3231 101-250 f a.7 632 632.7 632.7.1 alpha bundles immunoglobulin/albumin-binding domain-like Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 001919145 e5tkyA1 002993159 Q87JU6_nD1 Q87JU6 Q87JU6_VIBPA VPA0152 3231 26-100 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001494453 e4ll7A1 002993160 Q87JU6_nD3 Q87JU6 Q87JU6_VIBPA VPA0152 3231 251-435 f a.7 3758 3758.2 3758.2.1 alpha bundles Bacterial hemolysins-like Biopolymer transport protein ExbB Biopolymer transport protein ExbB 002791221 e7ajqE1 002993161 Q87L43_nD1 Q87L43 RS12_VIBPA VP2773 rpsL 30S ribosomal protein S12 2772 16-120 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002028817 e5mrcLL1 002993162 Q87K02_nD1 Q87K02 Q87K02_VIBPA VPA0096 3175 26-214 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000141724 e2x27X1 002993163 Q87QB3_nD2 Q87QB3 Q87QB3_VIBPA VP1237 1237 436-540 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002491494 e6ebnA2 002993164 Q87QB3_nD1 Q87QB3 Q87QB3_VIBPA VP1237 1237 11-435 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001194152 e2okjB2 002993165 Q87HV3_nD1 Q87HV3 Q87HV3_VIBPA VPA0853 3932 1-155 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 001883344 e5edlA1 002993166 Q87FL2_nD1 Q87FL2 Q87FL2_VIBPA VPA1667 PTS system glucose-specific EIICB component 4746 6-385 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002993167 Q87FL2_nD2 Q87FL2 Q87FL2_VIBPA VPA1667 PTS system glucose-specific EIICB component 4746 401-480 f a.11 306 306.1 306.1.1 a+b two layers Glucose permease domain IIB-like Glucose permease domain IIB Glucose permease domain IIB 000351323 e3bp3B1 002993168 Q87I63_nD1 Q87I63 Q87I63_VIBPA VPA0743 3822 6-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001291818 e4q7eA1 002993169 Q87I63_nD2 Q87I63 Q87I63_VIBPA VPA0743 3822 146-540 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002774007 e6vbv41 002993170 Q87QH5_nD2 Q87QH5 Q87QH5_VIBPA VP1174 1174 41-65 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002993171 Q87QH5_nD1 Q87QH5 Q87QH5_VIBPA VP1174 1174 6-30 f a.7 3928 3928.1 3928.1.1 alpha bundles Cell division protein CrgA Cell division protein CrgA Cell division protein CrgA 001487328 e2mmuA1 002993172 Q87JM8_nD1 Q87JM8 Q87JM8_VIBPA VPA0220 YtfJ family protein 3299 21-183 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002392103 e6gc1C1 002993173 Q87IW8_nD1 Q87IW8 Q87IW8_VIBPA VPA0488 Transport permease protein 3567 46-145 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518824 e3cniA1 002993174 Q87IW8_nD2 Q87IW8 Q87IW8_VIBPA VPA0488 Transport permease protein 3567 1-45,166-365 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002784862 e7r8eA2 002993175 Q87RP7_nD2 Q87RP7 Q87RP7_VIBPA VP0730 730 206-290 f a.14 217 217.2 217.2.1 a+b complex topology FAD-binding domain-like CorC/HlyC domain-like CorC/HlyC domain-like 001016923 e4hg0A2 002993176 Q87RP7_nD1 Q87RP7 Q87RP7_VIBPA VP0730 730 38-205 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 002725397 e7cfiA1 002993177 Q87JU8_nD2 Q87JU8 Q87JU8_VIBPA VPA0150 3229 31-40,156-695 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001718519 e1xkhC2 002993178 Q87JU8_nD1 Q87JU8 Q87JU8_VIBPA VPA0150 3229 41-155 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 002534565 e6i96A2 002993179 Q87LT9_nD2 Q87LT9 Q87LT9_VIBPA VP2522 nicotinate-nucleotide diphosphorylase (carboxylating) 2522 126-290 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000141217 e3pajA1 002993180 Q87LT9_nD1 Q87LT9 Q87LT9_VIBPA VP2522 nicotinate-nucleotide diphosphorylase (carboxylating) 2522 6-125 f a.14 325 325.1 325.1.4 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Nicotinate/Quinolinate PRTase N-terminal domain-like 000141218 e3pajA2 002993181 Q87IR8_nD1 Q87IR8 Q87IR8_VIBPA VPA0538 Cytochrome c oxidase assembly protein CtaG 3617 11-40 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 002131732 e3jc9Oa2 002993182 Q87IR8_nD2 Q87IR8 Q87IR8_VIBPA VPA0538 Cytochrome c oxidase assembly protein CtaG 3617 51-175 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001813077 e4acqA10 002993183 Q87LV9_nD1 Q87LV9 SFSA_VIBPA VP2499 sfsA Sugar fermentation stimulation protein homolog 2499 1-80 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001088855 e4dapA1 002993184 Q87LV9_nD2 Q87LV9 SFSA_VIBPA VP2499 sfsA Sugar fermentation stimulation protein homolog 2499 81-238 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001088856 e4dapA2 002993185 Q87K76_nD1 Q87K76 Q87K76_VIBPA VPA0022 DUF2268 domain-containing protein 3101 6-210 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002738698 e6hqaA1 002993186 Q87MN0_nD1 Q87MN0 Q87MN0_VIBPA VP2201 Trimeric intracellular cation channel family protein 2201 1-195 f a.10 1111 1111.1 1111.1.1 alpha complex topology Trimeric intracellular cation (TRIC) channel Trimeric intracellular cation (TRIC) channel Trimeric intracellular cation (TRIC) channel 002088051 e5wueA1 002993187 Q87K13_nD1 Q87K13 Q87K13_VIBPA VPA0085 3164 21-225 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298163 e2wjqA1 002993188 Q87NX4_nD1 Q87NX4 Q87NX4_VIBPA VP1744 Metal-dependent carboxypeptidase 1744 21-508 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000011478 e1k9xA1 002993189 Q87MS4_nD2 Q87MS4 Q87MS4_VIBPA VP2157 Glyceraldehyde-3-phosphate dehydrogenase 2157 146-315 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000147121 e3pymA1 002993190 Q87MS4_nD1 Q87MS4 Q87MS4_VIBPA VP2157 Glyceraldehyde-3-phosphate dehydrogenase 2157 1-145,316-330 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001088436 e4lsmB2 002993191 Q87H16_nD1 Q87H16 Q87H16_VIBPA VPA1149 Peripla_BP_6 domain-containing protein 4228 26-150,286-380 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001851858 e3eafA1 002993192 Q87H16_nD2 Q87H16 Q87H16_VIBPA VPA1149 Peripla_BP_6 domain-containing protein 4228 151-285,381-414 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001842918 e5fbkA1 002993193 Q87NS3_nD1 Q87NS3 Q87NS3_VIBPA VP1795 DUF3265 domain-containing protein 1795 1-25 f a.21 5011 5011.1 5011.1.1 extended segments Bacterial ba3 type cytochrome c oxidase subunit IIa Bacterial ba3 type cytochrome c oxidase subunit IIa Bacterial ba3 type cytochrome c oxidase subunit IIa 001164604 e3s3cC2 002993194 Q87T26_nD1 Q87T26 Q87T26_VIBPA VP0244 Fructose-1,6-bisphosphatase 244 6-110,271-335 f a.11 4018 4018.1 4018.1.1 a+b two layers a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases 000353495 e3bigA1 002993195 Q87T26_nD2 Q87T26 Q87T26_VIBPA VP0244 Fructose-1,6-bisphosphatase 244 111-270 f a.17 7587 7587.1 7587.1.2 a/b three-layered sandwiches Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in glpX-like bacterial fructose-1,6-bisphosphatase 000353496 e3bigA2 002993196 Q87LE6_nD2 Q87LE6 Q87LE6_VIBPA VP2666 Arabinose 5-phosphate isomerase 2665 201-320 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 001140697 e4o9kA1 002993197 Q87LE6_nD1 Q87LE6 Q87LE6_VIBPA VP2666 Arabinose 5-phosphate isomerase 2665 1-200 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 002162535 e5uqiA1 002993198 Q87MQ9_nD2 Q87MQ9 Q87MQ9_VIBPA VP2172 YheO-like PAS domain protein 2172 181-250 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000266411 e1r71B1 002993199 Q87MQ9_nD1 Q87MQ9 Q87MQ9_VIBPA VP2172 YheO-like PAS domain protein 2172 36-160 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002753462 e7dwmA2 002993200 Q87LJ6_nD1 Q87LJ6 Q87LJ6_VIBPA VP2616 Pyridoxal phosphate homeostasis protein 2615 1-230 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000144096 e3sy1A1 002993201 Q87RS5_nD1 Q87RS5 SYDP_VIBPA VP0702 syd Protein Syd 702 6-180 f a.11 4205 4205.1 4205.1.1 a+b two layers SMI1/KNR4-like SMI1/KNR4-like SMI1/KNR4-like 000170098 e3ffvA1 002993202 Q87KF0_nD1 Q87KF0 THIC_VIBPA VP3027 thiC Phosphomethylpyrimidine synthase 3026 6-605 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001545649 e4s28A1 002993203 Q87SL9_nD1 Q87SL9 Q87SL9_VIBPA VP0403 HTH cro/C1-type domain-containing protein 403 6-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001320641 e4pu4D1 002993204 Q87QI2_nD1 Q87QI2 Q87QI2_VIBPA VP1167 1167 1-260 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002993205 Q87JB7_nD1 Q87JB7 Q87JB7_VIBPA VPA0336 DUF2391 domain-containing protein 3415 6-130 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 002774062 e6o6pA2 002993206 Q87MG2_nD1 Q87MG2 RNH_VIBPA VP2293 rnhA Ribonuclease HI 2293 1-150 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001411493 e4ly7A1 002993207 Q87S46_nD1 Q87S46 Q87S46_VIBPA VP0578 ADP/GDP-polyphosphate phosphotransferase 578 1-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002125366 e5llfD1 002993208 Q87FM0_nD1 Q87FM0 Q87FM0_VIBPA VPA1659 Siderophore synthetase component 4738 1-140,161-180 f a.11 3264 3264.1 3264.1.1 a+b two layers N-terminal domain of alcaligin biosynthesis protein C N-terminal domain of alcaligin biosynthesis protein C N-terminal domain of alcaligin biosynthesis protein C 001842238 e5jm8A2 002993209 Q87FM0_nD2 Q87FM0 Q87FM0_VIBPA VPA1659 Siderophore synthetase component 4738 141-160,181-605 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001269287 e2x3jA3 002993210 Q87QG3_nD1 Q87QG3 Q87QG3_VIBPA VP1186 1186 1-220 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 002774629 e6yxyEC1 002993211 Q87NF5_nD1 Q87NF5 Q87NF5_VIBPA VP1913 DUF2982 domain-containing protein 1913 16-60 f a.6 148 148.1 148.1.1 alpha arrays Histone-like Histone-related Histone 000148506 e3vh5W1 002993212 Q87NF5_nD2 Q87NF5 Q87NF5_VIBPA VP1913 DUF2982 domain-containing protein 1913 1-10,61-220 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 001019419 e4khbB1 002993213 Q87RX5_nD2 Q87RX5 GRPE_VIBPA VP0651 grpE Protein GrpE 651 141-198 f a.5 706 706.1 706.1.1 beta complex topology Head domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 000002307 e1dkgA1 002993214 Q87RX5_nD1 Q87RX5 GRPE_VIBPA VP0651 grpE Protein GrpE 651 11-140 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 000184859 e2p22A1 002993215 Q87GI9_nD1 Q87GI9 Q87GI9_VIBPA VPA1327 4406 28-220 f a.14 237 237.1 237.1.1 a+b complex topology ADP-ribosylation ADP-ribosylation ADP-ribosylation 002402637 e6gn8C1 002993216 Q87RR3_nD1 Q87RR3 Q87RR3_VIBPA VP0714 YitT family protein 714 11-185 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001714378 e5aynA1 002993217 Q87GJ5_nD1 Q87GJ5 Q87GJ5_VIBPA VPA1321 4400 92-365 f a.13 288 288.1 288.1.1 a+b four layers CNF1/YfiH-like putative cysteine hydrolases CNF1/YfiH-like putative cysteine hydrolases CNF1/YfiH-like putative cysteine hydrolases 000007915 e1hq0A1 002993218 Q87PV3_nD2 Q87PV3 Q87PV3_VIBPA VP1398 DUF2169 domain-containing protein 1398 12-85,248-325 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000001694 e1u58A1 002993219 Q87PV3_nD1 Q87PV3 Q87PV3_VIBPA VP1398 DUF2169 domain-containing protein 1398 86-165 f 002993220 Q87K18_nD1 Q87K18 Q87K18_VIBPA VPA0080 3159 1-210 f a.17 7560 7560.1 7560.1.1 a/b three-layered sandwiches Ribose/Galactose isomerase RpiB/AlsB Ribose/Galactose isomerase RpiB/AlsB Ribose/Galactose isomerase RpiB/AlsB 002772969 e4u8fB1 002993221 Q87RZ0_nD2 Q87RZ0 Q87RZ0_VIBPA VP0634 Hydrolase 634 211-505 f a.13 246 246.1 246.1.1 a+b four layers Carbon-nitrogen hydrolase-like Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 000955913 e2vhhC1 002993222 Q87RZ0_nD1 Q87RZ0 Q87RZ0_VIBPA VP0634 Hydrolase 634 6-205 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002527392 e6mfcB1 002993223 Q87M78_nD1 Q87M78 Q87M78_VIBPA VP2380 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2380 1-165 f a.14 3610 3610.1 3610.1.1 a+b complex topology Tetrahydrodipicolinate N-succinyletransferase N-terminal domain Tetrahydrodipicolinate N-succinyletransferase N-terminal domain Tetrahydrodipicolinate N-succinyletransferase N-terminal domain 000970450 e3r5dB2 002993224 Q87M78_nD2 Q87M78 Q87M78_VIBPA VP2380 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2380 166-343 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 001516034 e3fsyD1 002993225 Q87GD8_nD1 Q87GD8 Q87GD8_VIBPA VPA1379 4458 1-75 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 000002757 e1fc3A1 002993226 Q87NG5_nD1 Q87NG5 Q87NG5_VIBPA VP1903 DNA-directed DNA polymerase 1903 16-243 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000137783 e3hl8A1 002993227 Q87TJ7_nD5 Q87TJ7 Q87TJ7_VIBPA VP0071 72 486-605 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001271812 e4hh2C10 002993228 Q87TJ7_nD2 Q87TJ7 Q87TJ7_VIBPA VP0071 72 141-265,296-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001873963 e3lkvA2 002993229 Q87TJ7_nD6 Q87TJ7 Q87TJ7_VIBPA VP0071 72 606-780 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002993230 Q87TJ7_nD1 Q87TJ7 Q87TJ7_VIBPA VP0071 72 26-140,266-295 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001870454 e3lftA1 002993231 Q87TJ7_nD4 Q87TJ7 Q87TJ7_VIBPA VP0071 72 361-485 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001839908 e2mwgA1 002993232 Q87TJ7_nD7 Q87TJ7 Q87TJ7_VIBPA VP0071 72 786-1045 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002993233 Q87TJ7_nD3 Q87TJ7 Q87TJ7_VIBPA VP0071 72 326-360 f a.4 4154 4154.1 4154.1.1 beta duplicates or obligate multimers E2F-DP heterodimerization region E2F-DP heterodimerization region E2F-DP heterodimerization region 000002284 e2azeB1 002993234 Q87M53_nD1 Q87M53 Q87M53_VIBPA VP2405 2405 6-355 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000185683 e4djiA1 002993235 Q87H42_nD1 Q87H42 Q87H42_VIBPA VPA1123 4202 6-270 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 001397680 e4n45B2 002993236 Q87H42_nD2 Q87H42 Q87H42_VIBPA VPA1123 4202 271-390 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002407216 e5xyjB2 002993237 Q87RM8_nD1 Q87RM8 Q87RM8_VIBPA VP0750 Pseudouridine synthase 750 6-60 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 000361718 e3dh3B2 002993238 Q87RM8_nD2 Q87RM8 Q87RM8_VIBPA VP0750 Pseudouridine synthase 750 66-235 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000361717 e3dh3B1 002993239 Q87HN2_nD1 Q87HN2 Q87HN2_VIBPA VPA0931 4010 16-250 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002993240 Q87RK7_nD1 Q87RK7 Q87RK7_VIBPA VP0771 Negative regulator of flagellin synthesis 771 41-100 f a.21 579 579.1 579.1.1 extended segments Anti-sigma factor FlgM Anti-sigma factor FlgM Anti-sigma factor FlgM 001159587 e1rp3H2 002993241 Q79YZ1_nD1 Q79YZ1 Q79YZ1_VIBPA VP0775 Flagellar basal body rod protein FlgB 775 1-130 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002734725 e7nvgQ21 002993242 Q79YW7_nD2 Q79YW7 Q79YW7_VIBPA VP2240 Flagellar protein 2240 66-110 f a.4 5 5.1 5.1.5 beta duplicates or obligate multimers beta-propeller-like beta-propeller 8-bladed 002577130 e5yp4B2 002993243 Q79YW7_nD1 Q79YW7 Q79YW7_VIBPA VP2240 Flagellar protein 2240 36-60 f a.21 3538 3538.1 3538.1.1 extended segments MerF MerF MerF 001064509 e2m67A1 002993244 Q87SZ7_nD1 Q87SZ7 RL18_VIBPA VP0273 rplR 50S ribosomal protein L18 273 6-115 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001860049 e5j8aDP1 002993245 Q79YW1_nD1 Q79YW1 Q79YW1_VIBPA VP2248 Flagellar motor switch protein FliG 2248 21-340 f a.6 531 531.1 531.1.1 alpha arrays Domains of FliG C-terminal domain of FliG C-terminal domain of FliG 001149078 e3usyA3 002993246 Q87M99_nD1 Q87M99 Q87M99_VIBPA VP2358 2358 11-125 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 001922202 e5tmcF2 002993247 Q87M99_nD2 Q87M99 Q87M99_VIBPA VP2358 2358 126-190 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002505916 e6p18Q1 002993248 Q87ID0_nD1 Q87ID0 Q87ID0_VIBPA VPA0676 Transcriptional regulator 3755 6-40 f a.7 192 192.17 192.17.1 alpha bundles Long alpha-hairpin Rabenosyn-5 Rab-binding domain-like Rabenosyn-5 Rab-binding domain-like 000004686 e1z0jB1 002993249 Q87HA6_nD1 Q87HA6 Q87HA6_VIBPA VPA1059 RDD family protein 4138 1-35 f a.21 5010 5010.1 5010.1.1 extended segments Bacterial aa3 type cytochrome c oxidase subunit IV Bacterial aa3 type cytochrome c oxidase subunit IV Bacterial aa3 type cytochrome c oxidase subunit IV 000061018 e1qleD1 002993250 Q87J67_nD2 Q87J67 Q87J67_VIBPA VPA0386 3465 76-209 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 000136269 e3ir4A1 002993251 Q87J67_nD1 Q87J67 Q87J67_VIBPA VPA0386 3465 1-75 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000144606 e3totA2 002993252 Q87P83_nD1 Q87P83 Q87P83_VIBPA VP1635 1635 71-190 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002993253 Q87Q75_nD1 Q87Q75 HUTG_VIBPA VP1275 hutG Formimidoylglutamase 1275 11-335 f a.17 2006 2006.1 2006.1.5 a/b three-layered sandwiches HAD domain-like HAD domain-related Arginase/deacetylase 000009950 e1xfkA1 002993254 Q87QA2_nD1 Q87QA2 SDHD_VIBPA VP1248 dsdA Probable D-serine dehydratase 1248 6-245 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002486236 e3ss7X2 002993255 Q87QA2_nD2 Q87QA2 SDHD_VIBPA VP1248 dsdA Probable D-serine dehydratase 1248 246-440 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002486235 e3ss7X1 002993256 Q87RQ1_nD1 Q87RQ1 Q87RQ1_VIBPA VP0726 lptE LPS-assembly lipoprotein LptE 726 21-165 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 001879403 e5ixmH1 002993257 Q87JF0_nD2 Q87JF0 Q87JF0_VIBPA VPA0303 3382 66-240 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 001190017 e4gmkA3 002993258 Q87JF0_nD1 Q87JF0 Q87JF0_VIBPA VPA0303 3382 1-65 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002724311 e7bzhA1 002993259 Q87N58_nD3 Q87N58 Q87N58_VIBPA VP2017 2017 226-260 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001030989 e2gmgA3 002993260 Q87N58_nD4 Q87N58 Q87N58_VIBPA VP2017 2017 261-420 f a.7 633 633.23 633.23.1 alpha bundles Bromodomain-like Claudin Claudin 002526817 e6ov2A1 002993261 Q87N58_nD2 Q87N58 Q87N58_VIBPA VP2017 2017 46-210 f a.7 633 633.23 633.23.1 alpha bundles Bromodomain-like Claudin Claudin 002093240 e5vouF1 002993262 Q87N58_nD1 Q87N58 Q87N58_VIBPA VP2017 2017 6-45 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002794632 e7eu1L1 002993263 Q87FN0_nD2 Q87FN0 Q87FN0_VIBPA VPA1649 4728 141-285 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 002774289 e6ue4B1 002993264 Q87FN0_nD1 Q87FN0 Q87FN0_VIBPA VPA1649 4728 21-125 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002068628 e2efsD1 002993265 Q87FN0_nD3 Q87FN0 Q87FN0_VIBPA VPA1649 4728 126-140,271-315 f a.6 1115 1115.1 1115.1.1 alpha arrays Csd1/Csd2 helical domain Csd1/Csd2 helical domain Csd1/Csd2 helical domain 001907152 e5j1mA2 002993266 Q87T09_nD1 Q87T09 RS19_VIBPA VP0261 rpsS 30S ribosomal protein S19 261 1-90 f a.11 838 838.1 838.1.1 a+b two layers Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19 002666358 e7k00S1 002993267 Q87LS9_nD1 Q87LS9 RIMM_VIBPA VP2532 rimM Ribosome maturation factor RimM 2532 11-100 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000134924 e3h9nA1 002993268 Q87LS9_nD2 Q87LS9 RIMM_VIBPA VP2532 rimM Ribosome maturation factor RimM 2532 106-180 f a.1 4 4.6 4.6.1 beta barrels SH3 PRC-barrel domain PRC-barrel domain 000134925 e3h9nA2 002993269 Q87T86_nD1 Q87T86 Y184_VIBPA VP0184 UPF0758 protein VP0184 184 16-90 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002961 e1x2iA1 002993270 Q87T86_nD2 Q87T86 Y184_VIBPA VP0184 UPF0758 protein VP0184 184 96-224 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 000165427 e2qlcA1 002993271 Q87N42_nD1 Q87N42 Q87N42_VIBPA VP2033 2033 1-248 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000352398 e3f1kA1 002993272 Q87ID9_nD1 Q87ID9 Q87ID9_VIBPA VPA0667 Orphan protein 3746 1-95 f a.11 310 310.2 310.2.1 a+b two layers RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF 002319513 e6eriAz1 002993273 Q87Q42_nD1 Q87Q42 Q87Q42_VIBPA VP1308 1308 6-595 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000167314 e3ce2A1 002993274 Q87TN4_nD1 Q87TN4 ILVC_VIBPA VP0035 ilvC Ketol-acid reductoisomerase (NADP(+)) 35 6-210 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001591898 e3ulkB1 002993275 Q87TN4_nD2 Q87TN4 ILVC_VIBPA VP0035 ilvC Ketol-acid reductoisomerase (NADP(+)) 35 211-494 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000053186 e1qmgB1 002993276 Q87NP2_nD2 Q87NP2 Q87NP2_VIBPA VP1826 PLD phosphodiesterase domain-containing protein 1826 131-270 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000153065 e4ggjA1 002993277 Q87NP2_nD1 Q87NP2 Q87NP2_VIBPA VP1826 PLD phosphodiesterase domain-containing protein 1826 1-120 f a.6 110 110.1 110.1.1 alpha arrays DEATH domain DEATH domain DEATH domain 002832705 e7lvjA1 002993278 Q87KL4_nD1 Q87KL4 Q87KL4_VIBPA VP2963 ABC transporter permease 2962 6-30 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002993279 Q87S01_nD1 Q87S01 Q87S01_VIBPA VP0623 623 1-418 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002993280 Q87IH1_nD2 Q87IH1 Q87IH1_VIBPA VPA0635 3714 211-460 f a.11 304 304.6 304.6.1 a+b two layers Alpha-beta plaits FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 001711537 e3w8xA1 002993281 Q87IH1_nD1 Q87IH1 Q87IH1_VIBPA VPA0635 3714 6-210 f a.14 217 217.1 217.1.1 a+b complex topology FAD-binding domain-like FAD-binding domain FAD-binding domain 001711538 e3w8xA2 002993282 Q87TK1_nD2 Q87TK1 Q87TK1_VIBPA VP0068 68 341-455 f a.11 244 244.2 244.2.1 a+b two layers FAD-linked reductases, C-terminal domain-like FAD/NAD-linked reduatases, dimerisation (C-terminal) domain FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 000076928 e1geuB1 002993283 Q87TK1_nD1 Q87TK1 Q87TK1_VIBPA VP0068 68 6-340 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001270281 e2eq6B5 002993284 Q87SW1_nD1 Q87SW1 IPYR_VIBPA VP0311 ppa Inorganic pyrophosphatase 311 1-175 f a.1 2 2.5 2.5.1 beta barrels OB-fold Inorganic pyrophosphatase Inorganic pyrophosphatase 000024881 e1mjzA1 002993285 Q87L39_nD2 Q87L39 Q87L39_VIBPA VP2777 Transcriptional regulator 2776 166-235 f a.6 101 101.1 101.1.6 alpha arrays HTH HTH TrpR 000143350 e3pvpA1 002993286 Q87L39_nD1 Q87L39 Q87L39_VIBPA VP2777 Transcriptional regulator 2776 26-160 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002753462 e7dwmA2 002993287 Q87Q87_nD1 Q87Q87 PUR7_VIBPA VP1263 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase 1263 6-365 f a.14 206 206.1 206.1.2 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp SAICAR synthase 000007110 e2cnqA1 002993288 Q87LL2_nD1 Q87LL2 Q87LL2_VIBPA VP2599 Fructose-bisphosphate aldolase 2598 1-175,196-358 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000093736 e1dosB1 002993289 Q87JN1_nD1 Q87JN1 Q87JN1_VIBPA VPA0217 5'-nucleotidase 3296 1-224 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000168976 e3ed5A1 002993290 Q87M91_nD1 Q87M91 Q87M91_VIBPA VP2367 SufE domain-containing protein 2367 6-140 f a.11 244 244.3 244.3.1 a+b two layers FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU 001088462 e4lw4C1 002993291 Q87IF4_nD1 Q87IF4 Q87IF4_VIBPA VPA0651 3731 6-30 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002632561 e6pqvY1 002993292 Q87TF9_nD1 Q87TF9 Q87TF9_VIBPA VP0110 110 21-105 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000051712 e1m70B1 002993293 Q87TF9_nD2 Q87TF9 Q87TF9_VIBPA VP0110 110 106-205 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000051728 e1m70B2 002993294 Q87K36_nD2 Q87K36 Q87K36_VIBPA VPA0062 3141 106-275 f a.7 3755 3755.1 3755.1.1 alpha bundles YscO-like Putative type III secretion protein YscO-related Putative type III secretion protein YscO-related 001097227 e3k29A1 002993295 Q87K36_nD1 Q87K36 Q87K36_VIBPA VPA0062 3141 6-105,276-345 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002993296 Q87K36_nD3 Q87K36 Q87K36_VIBPA VPA0062 3141 351-559 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000162642 e2i82A1 002993297 Q87JI6_nD3 Q87JI6 Q87JI6_VIBPA VPA0267 Flagellar hook protein FlgE 3346 66-140,281-360 f a.5 4167 4167.1 4167.1.1 beta complex topology Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain 002323884 e5npyA1 002993298 Q87JI6_nD1 Q87JI6 Q87JI6_VIBPA VPA0267 Flagellar hook protein FlgE 3346 1-60,361-395 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002993299 Q87JI6_nD2 Q87JI6 Q87JI6_VIBPA VPA0267 Flagellar hook protein FlgE 3346 146-280 f a.3 4998 4998.1 4998.1.1 beta sandwiches Flagellar hook protein flgE D2 domain-like Flagellar hook protein flgE D2 domain Flagellar hook protein flgE D2 domain 002524022 e6ndxB1 002993300 Q87PH8_nD2 Q87PH8 NPD_VIBPA VP1524 cobB NAD-dependent protein deacylase 1524 116-150 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000119030 e1s5pA1 002993301 Q87PH8_nD1 Q87PH8 NPD_VIBPA VP1524 cobB NAD-dependent protein deacylase 1524 1-115,151-240 f a.17 2003 2003.1 2003.1.4 a/b three-layered sandwiches Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain 001762777 e5btrB1 002993302 Q87NM4_nD1 Q87NM4 Q87NM4_VIBPA VP1844 N-acetyltransferase domain-containing protein 1844 1-130 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000114497 e1y9wB1 002993303 Q87TJ8_nD2 Q87TJ8 Q87TJ8_VIBPA VP0072 71 116-200 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000064533 e2cg4B2 002993304 Q87TJ8_nD1 Q87TJ8 Q87TJ8_VIBPA VP0072 71 31-115 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045582 e2cg4B1 002993305 Q87I01_nD2 Q87I01 Q87I01_VIBPA VPA0805 aminomethyltransferase 3884 286-370 f a.1 1 1.1 1.1.8 beta barrels cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain 000134079 e3girA1 002993306 Q87I01_nD1 Q87I01 Q87I01_VIBPA VPA0805 aminomethyltransferase 3884 6-280 f a.11 304 304.107 304.107.1 a+b two layers Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain 002068964 e1v5vB2 002993307 Q87GR9_nD1 Q87GR9 Q87GR9_VIBPA VPA1246 HTH cro/C1-type domain-containing protein 4325 1-80 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002101829 e5woqB1 002993308 Q87GR9_nD2 Q87GR9 Q87GR9_VIBPA VPA1246 HTH cro/C1-type domain-containing protein 4325 81-225 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002713 e2p4wA1 002993309 Q87G46_nD2 Q87G46 Q87G46_VIBPA VPA1471 4550 201-470 f a.10 182 182.1 182.1.1 alpha complex topology Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain 000061970 e1dnpA1 002993310 Q87G46_nD1 Q87G46 Q87G46_VIBPA VPA1471 4550 1-200 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001164974 e3umvA3 002993311 Q87ID7_nD1 Q87ID7 Q87ID7_VIBPA VPA0669 Flg_bbr_C domain-containing protein 3748 6-100 f a.7 150 150.5 150.5.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines ESAT-6 like ESAT-6 like 000153927 e3zbhD1 002993312 Q87RG0_nD1 Q87RG0 Q87RG0_VIBPA VP0837 837 1-255 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000166679 e3bf7A1 002993313 Q9AJH1_nD1 Q9AJH1 RSMH_VIBPA VP0452 rsmH Ribosomal RNA small subunit methyltransferase H 452 6-110,216-315 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000150332 e3tkaA2 002993314 Q9AJH1_nD2 Q9AJH1 RSMH_VIBPA VP0452 rsmH Ribosomal RNA small subunit methyltransferase H 452 116-215 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000150331 e3tkaA1 002993315 Q87SA3_nD4 Q87SA3 Q87SA3_VIBPA VP0521 phosphoenolpyruvate--protein phosphotransferase 521 416-745 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000192691 e2hroA1 002993316 Q87SA3_nD3 Q87SA3 Q87SA3_VIBPA VP0521 phosphoenolpyruvate--protein phosphotransferase 521 171-190,316-415 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000204157 e2wqdA3 002993317 Q87SA3_nD2 Q87SA3 Q87SA3_VIBPA VP0521 phosphoenolpyruvate--protein phosphotransferase 521 191-310 f a.6 607 607.1 607.1.1 alpha arrays Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 001919083 e5t1oB1 002993318 Q87SA3_nD1 Q87SA3 Q87SA3_VIBPA VP0521 phosphoenolpyruvate--protein phosphotransferase 521 1-170 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000144753 e3trcA1 002993319 Q87P34_nD1 Q87P34 Q87P34_VIBPA VP1684 Type III secretion system chaperone 1684 21-150 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 000394440 e3kxyG1 002993320 Q87KV9_nD2 Q87KV9 Q87KV9_VIBPA VP2866 2865 146-205 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001148285 e4gvpA5 002993321 Q87KV9_nD1 Q87KV9 Q87KV9_VIBPA VP2866 2865 6-145 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002138611 e5o8zA1 002993322 Q87P97_nD1 Q87P97 Q87P97_VIBPA VP1621 1621 186-250 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002589205 e5nikK1 002993323 Q87P97_nD2 Q87P97 Q87P97_VIBPA VP1621 1621 46-180,251-395 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002993324 Q87JS1_nD2 Q87JS1 Q87JS1_VIBPA VPA0177 3256 176-225 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002993325 Q87JS1_nD1 Q87JS1 Q87JS1_VIBPA VPA0177 3256 1-175 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002141187 e5u9eA1 002993326 Q87JS1_nD3 Q87JS1 Q87JS1_VIBPA VPA0177 3256 226-288 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001762220 e3w6vA1 002993327 Q87MD5_nD2 Q87MD5 Y2321_VIBPA VP2321 UPF0325 protein VP2321 2321 96-125 f a.7 192 192.14 192.14.1 alpha bundles Long alpha-hairpin Siah interacting protein N terminal domain-like Siah interacting protein N terminal domain-like 000060657 e1ysmA1 002993328 Q87MD5_nD1 Q87MD5 Y2321_VIBPA VP2321 UPF0325 protein VP2321 2321 1-90 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 001141835 e3b77A2 002993329 Q87SI3_nD1 Q87SI3 Q87SI3_VIBPA VP0440 Secreted protein 440 6-40 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 002336525 e5w1aC3 002993330 Q87MT5_nD1 Q87MT5 Q87MT5_VIBPA VP2146 2146 1-229 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009085 e1snyA1 002993331 Q87HB2_nD1 Q87HB2 Q87HB2_VIBPA VPA1053 PPC domain-containing protein 4132 1-134 f a.11 4111 4111.1 4111.1.1 a+b two layers AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 000164595 e2p6yA1 002993332 Q87PU2_nD2 Q87PU2 Q87PU2_VIBPA VP1409 ImpA_N domain-containing protein 1409 236-355 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002580990 e6tnfA1 002993333 Q87PU2_nD1 Q87PU2 Q87PU2_VIBPA VP1409 ImpA_N domain-containing protein 1409 11-195 f a.9 109 109.51 109.51.1 alpha superhelices Repetitive alpha hairpins TssA helical domains TssA helical domains 002491401 e6hs5A1 002993334 Q87PU2_nD4 Q87PU2 Q87PU2_VIBPA VP1409 ImpA_N domain-containing protein 1409 391-430 f a.15 857 857.1 857.1.1 a+b duplicates or obligate multimers Cell division protein ZapA-like Cell division protein ZapA-like Cell division protein ZapA-like 000367580 e3hnwB1 002993335 Q87PU2_nD3 Q87PU2 Q87PU2_VIBPA VP1409 ImpA_N domain-containing protein 1409 356-390 f a.7 632 632.22 632.22.1 alpha bundles immunoglobulin/albumin-binding domain-like Cell division protein EzrA repeats Cell division protein EzrA repeats 001503722 e4uy3A2 002993336 Q87I48_nD1 Q87I48 Q87I48_VIBPA VPA0758 3837 6-150 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 001684334 e4zbpB1 002993337 Q87T08_nD1 Q87T08 RL22_VIBPA VP0262 rplV 50S ribosomal protein L22 262 1-110 f a.11 218 218.2 218.2.1 a+b two layers Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22 001860057 e5j8aDT1 002993338 Q87FV7_nD1 Q87FV7 Q87FV7_VIBPA VPA1571 4650 1-150 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000138564 e3lodA1 002993339 Q87ME8_nD1 Q87ME8 FABZ_VIBPA VP2307 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ 2307 6-150 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 002459933 e6n3pE1 002993340 Q87HG1_nD1 Q87HG1 Q87HG1_VIBPA VPA1004 4083 41-100 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394297 e5ogeB2 002993341 Q87JW6_nD1 Q87JW6 Q87JW6_VIBPA VPA0132 Aminopyrimidine aminohydrolase 3211 1-220 f a.7 150 150.1 150.1.2 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Heme oxygenase/Ribonucleotide reductase 000139354 e3mvuA1 002993342 Q87ST9_nD1 Q87ST9 Q87ST9_VIBPA VP0333 Dihydrofolate reductase 333 1-160 f a.17 7501 7501.1 7501.1.1 a/b three-layered sandwiches Dihydrofolate reductases Dihydrofolate reductases Dihydrofolate reductases 000368174 e3ia4C1 002993343 Q87TC0_nD7 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 641-725 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001487336 e4nnhB1 002993344 Q87TC0_nD3 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 106-320 f a.10 4342 4342.1 4342.1.1 alpha complex topology Tex N-terminal region-like Tex N-terminal region-like Tex N-terminal region-like 000004902 e3bzkA6 002993345 Q87TC0_nD4 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 321-475 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011168 e3bzkA7 002993346 Q87TC0_nD2 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 66-105 f a.7 632 632.13 632.13.1 alpha bundles immunoglobulin/albumin-binding domain-like Tex bundle domain-like Tex bundle domain-like 000003610 e3bzkA5 002993347 Q87TC0_nD5 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 476-560 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002963 e3bzkA3 002993348 Q87TC0_nD1 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 6-65 f a.6 101 101.26 101.26.1 alpha arrays HTH Tex N-terminal domain Tex N-terminal domain 000002916 e3bzkA2 002993349 Q87TC0_nD6 Q87TC0 Q87TC0_VIBPA VP0150 S1 motif domain-containing protein 150 561-630 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002964 e3bzkA4 002993350 Q87GD4_nD1 Q87GD4 Q87GD4_VIBPA VPA1383 4462 21-94 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002637038 e6vwxF1 002993351 Q87SA7_nD1 Q87SA7 Q87SA7_VIBPA VP0517 Lysyl-tRNA synthetase 517 1-100 f a.11 896 896.1 896.1.1 a+b two layers SRP9/14-like Signal recognition particle alu RNA binding heterodimer SRP9/14-related Signal recognition particle alu RNA binding heterodimer SRP9/14-related 002675885 e6zj3Lz1 002993352 Q87KN8_nD1 Q87KN8 TRMA_VIBPA VP2939 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase 2938 11-369 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000340735 e3bt7B1 002993353 Q87JF2_nD1 Q87JF2 Q87JF2_VIBPA VPA0301 msrA Peptide methionine sulfoxide reductase MsrA 3380 1-155 f a.11 304 304.3 304.3.2 a+b two layers Alpha-beta plaits HMA-related Peptide methionine sulfoxide reductase 000167001 e3bqeA1 002993354 Q87KA6_nD1 Q87KA6 ATPA_VIBPA VP3071 atpA ATP synthase subunit alpha 3070 36-105 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002632556 e6pqvB3 002993355 Q87KA6_nD2 Q87KA6 ATPA_VIBPA VP3071 atpA ATP synthase subunit alpha 3070 106-390 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000420141 e3oaaR3 002993356 Q87KA6_nD3 Q87KA6 ATPA_VIBPA VP3071 atpA ATP synthase subunit alpha 3070 391-523 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 002632555 e6pqvB2 002993357 Q87LR5_nD1 Q87LR5 CSRA_VIBPA VP2546 csrA Translational regulator CsrA 2546 1-60 f a.4 4313 4313.1 4313.1.1 beta duplicates or obligate multimers CsrA-like CsrA-like CsrA-like 001883466 e5dmbD1 002993358 Q87PC8_nD2 Q87PC8 MATP_VIBPA VP1589 matP Macrodomain Ter protein 1589 91-130 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 000987683 e3veaA1 002993359 Q87PC8_nD1 Q87PC8 MATP_VIBPA VP1589 matP Macrodomain Ter protein 1589 1-85 f a.6 3577 3577.1 3577.1.1 alpha arrays Macrodomain Ter protein MatP Macrodomain Ter protein MatP Macrodomain Ter protein MatP 000987684 e3veaA2 002993360 Q87MX0_nD1 Q87MX0 RNFG_VIBPA VP2106 rnfG Ion-translocating oxidoreductase complex subunit G 2106 6-200 f a.11 3518 3518.1 3518.1.1 a+b two layers putative RnfG subunit of electron transport complex putative RnfG subunit of electron transport complex putative RnfG subunit of electron transport complex 001414916 e4p6vC1 002993361 Q87MR3_nD4 Q87MR3 Q87MR3_VIBPA VP2168 Small-conductance mechanosensitive channel 2168 386-455 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002832655 e7dluA3 002993362 Q87MR3_nD3 Q87MR3 Q87MR3_VIBPA VP2168 Small-conductance mechanosensitive channel 2168 266-385 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002566250 e6pwpF1 002993363 Q87MR3_nD1 Q87MR3 Q87MR3_VIBPA VP2168 Small-conductance mechanosensitive channel 2168 41-100 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001731318 e4xriA1 002993364 Q87MR3_nD5 Q87MR3 Q87MR3_VIBPA VP2168 Small-conductance mechanosensitive channel 2168 456-555 f a.11 304 304.39 304.39.1 a+b two layers Alpha-beta plaits Mechanosensitive channel protein MscS (YggB), C-terminal domain Mechanosensitive channel protein MscS (YggB), C-terminal domain 001564990 e5ajiA3 002993365 Q87MR3_nD2 Q87MR3 Q87MR3_VIBPA VP2168 Small-conductance mechanosensitive channel 2168 101-265 f a.7 603 603.1 603.1.1 alpha bundles STAT-like t-snare proteins t-snare proteins 002417806 e4jeuB1 002993366 Q87HA9_nD1 Q87HA9 Q87HA9_VIBPA VPA1056 4135 1-260 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002993367 Q87G49_nD2 Q87G49 Q87G49_VIBPA VPA1468 4547 221-390 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002993368 Q87G49_nD1 Q87G49 Q87G49_VIBPA VPA1468 4547 1-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002993369 Q87PU4_nD1 Q87PU4 Q87PU4_VIBPA VP1407 1407 1-60 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001551612 e4pcqB2 002993370 Q87PU4_nD2 Q87PU4 Q87PU4_VIBPA VP1407 1407 61-145 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000334399 e2e7xA2 002993371 Q87HW0_nD1 Q87HW0 Q87HW0_VIBPA VPA0846 EAL domain-containing protein 3925 1-260 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002540613 e6ih7A1 002993372 Q87LT5_nD2 Q87LT5 Q87LT5_VIBPA VP2526 Prepilin leader peptidase/N-methyltransferase 2526 11-45,106-285 f a.7 3457 3457.1 3457.1.1 alpha bundles GxGD membrane protease GxGD membrane protease GxGD membrane protease 000185516 e3s0xA1 002993373 Q87LT5_nD1 Q87LT5 Q87LT5_VIBPA VP2526 Prepilin leader peptidase/N-methyltransferase 2526 68-105 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001715231 e5fmfR2 002993374 Q87LP1_nD2 Q87LP1 RECO_VIBPA VP2570 recO DNA repair protein RecO 2569 86-235 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 000418427 e3q8dB2 002993375 Q87LP1_nD1 Q87LP1 RECO_VIBPA VP2570 recO DNA repair protein RecO 2569 6-85 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000143170 e3q8dA2 002993376 Q87RU4_nD1 Q87RU4 RISB_VIBPA VP0682 ribH 6,7-dimethyl-8-ribityllumazine synthase 682 6-155 f a.17 2007 2007.1 2007.1.13 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Lumazine synthase 000411640 e3mk3i1 002993377 Q87JI5_nD2 Q87JI5 Q87JI5_VIBPA VPA0268 Flagellar basal body protein 3347 71-200 f a.5 4167 4167.1 4167.1.1 beta complex topology Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain 002516325 e6jf2B1 002993378 Q87JI5_nD1 Q87JI5 Q87JI5_VIBPA VPA0268 Flagellar basal body protein 3347 1-70,201-240 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002993379 Q87GZ5_nD1 Q87GZ5 Q87GZ5_VIBPA VPA1170 Molybdopterin molybdenumtransferase 4249 51-145 f a.14 3052 3052.1 3052.1.1 a+b complex topology MoeA domain II MoeA domain II MoeA domain II 000007656 e1g8lA4 002993380 Q87GZ5_nD2 Q87GZ5 Q87GZ5_VIBPA VPA1170 Molybdopterin molybdenumtransferase 4249 26-50,146-175 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 000004983 e1g8lA2 002993381 Q87GZ5_nD4 Q87GZ5 Q87GZ5_VIBPA VPA1170 Molybdopterin molybdenumtransferase 4249 331-410 f a.1 70 70.1 70.1.1 beta barrels beta-clip MoeA C-terminal domain-like MoeA C-terminal domain-like 000027166 e2nrpB1 002993382 Q87GZ5_nD3 Q87GZ5 Q87GZ5_VIBPA VPA1170 Molybdopterin molybdenumtransferase 4249 11-25,176-330 f a.17 7541 7541.1 7541.1.1 a/b three-layered sandwiches Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins Molybdenum cofactor biosynthesis proteins 002710597 e6q32A1 002993383 Q87HN6_nD2 Q87HN6 Q87HN6_VIBPA VPA0927 4006 156-320 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002993384 Q87HN6_nD1 Q87HN6 Q87HN6_VIBPA VPA0927 4006 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000104748 e2v0nA3 002993385 Q87RJ0_nD2 Q87RJ0 Q87RJ0_VIBPA VP0804 NfeD domain-containing protein 804 91-153 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000168820 e2k14A1 002993386 Q87RJ0_nD1 Q87RJ0 Q87RJ0_VIBPA VP0804 NfeD domain-containing protein 804 6-75 f a.10 3843 3843.1 3843.1.1 alpha complex topology NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K 002452585 e6nbqE1 002993387 Q87MP1_nD1 Q87MP1 TRUA_VIBPA VP2190 truA tRNA pseudouridine synthase A 2190 1-260 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000066576 e1dj0B1 002993388 Q87MR1_nD1 Q87MR1 Q87MR1_VIBPA VP2170 2170 6-55 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 000061901 e1rp3E3 002993389 Q87TG2_nD1 Q87TG2 Q87TG2_VIBPA VP0107 polA DNA polymerase I 107 6-170 f a.17 2006 2006.1 2006.1.4 a/b three-layered sandwiches HAD domain-like HAD domain-related PIN domain-like 002168200 e6c33A1 002993390 Q87TG2_nD5 Q87TG2 Q87TG2_VIBPA VP0107 polA DNA polymerase I 107 696-720,846-930 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001515380 e4x0pC3 002993391 Q87TG2_nD2 Q87TG2 Q87TG2_VIBPA VP0107 polA DNA polymerase I 107 171-290,321-520 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 002168201 e6c33A2 002993392 Q87TG2_nD4 Q87TG2 Q87TG2_VIBPA VP0107 polA DNA polymerase I 107 721-845 f a.6 4964 4964.1 4964.1.1 alpha arrays helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I 000047530 e2kfzA1 002993393 Q87TG2_nD3 Q87TG2 Q87TG2_VIBPA VP0107 polA DNA polymerase I 107 521-695 f a.7 4970 4970.1 4970.1.1 alpha bundles "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I 001236813 e4dqqA12 002993394 P22096_nD2 P22096 TRPD_VIBPA VP1958 trpD Anthranilate phosphoribosyltransferase 1958 66-330 f a.17 7544 7544.1 7544.1.1 a/b three-layered sandwiches Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 000109593 e1khdD2 002993395 P22096_nD1 P22096 TRPD_VIBPA VP1958 trpD Anthranilate phosphoribosyltransferase 1958 1-65 f a.6 184 184.1 184.1.1 alpha arrays Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N 002162292 e5noeC2 002993396 Q87KD7_nD3 Q87KD7 Q87KD7_VIBPA VP3040 3039 301-370 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002832810 e7ne9AAA1 002993397 Q87KD7_nD1 Q87KD7 Q87KD7_VIBPA VP3040 3039 6-80 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001546110 e3majA3 002993398 Q87KD7_nD2 Q87KD7 Q87KD7_VIBPA VP3040 3039 81-300 f a.17 7563 7563.1 7563.1.1 a/b three-layered sandwiches MCP/YpsA-related MCP/YpsA-related MCP/YpsA-related 002605766 e3majA4 002993399 Q87M20_nD1 Q87M20 Q87M20_VIBPA VP2439 2439 1-255 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008935 e1zzmA1 002993400 Q87H25_nD1 Q87H25 Q87H25_VIBPA VPA1140 PhzF family phenazine biosynthesis protein 4219 1-115 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 001177798 e4dunA3 002993401 Q87H25_nD2 Q87H25 Q87H25_VIBPA VPA1140 PhzF family phenazine biosynthesis protein 4219 116-250 f a.14 286 286.1 286.1.1 a+b complex topology Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like 001107971 e1s7jA3 002993402 Q87IE6_nD1 Q87IE6 Q87IE6_VIBPA VPA0660 3739 1-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001918562 e5b57C1 002993403 Q87LD1_nD1 Q87LD1 Q87LD1_VIBPA VP2681 2680 11-420 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002803887 e7qiaA1 002993404 Q87MM0_nD2 Q87MM0 Q87MM0_VIBPA VP2211 Chemotaxis protein 2211 116-240 f a.12 881 881.4 881.4.1 a+b three layers Mog1p/PsbP-like C-terminal domain in sigma-E factor regulatory protein rseB C-terminal domain in sigma-E factor regulatory protein rseB 002774000 e6jauA2 002993405 Q87MM0_nD1 Q87MM0 Q87MM0_VIBPA VP2211 Chemotaxis protein 2211 1-50 f a.6 564 564.1 564.1.1 alpha arrays N-terminal, cytoplasmic domain of anti-sigma factors N-terminal, cytoplasmic domain of anti-sigma factors N-terminal, cytoplasmic domain of anti-sigma factors 001225045 e2q1zD3 002993406 Q87TG0_nD1 Q87TG0 ENGB_VIBPA VP0109 engB Probable GTP-binding protein EngB 109 1-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002807637 e7szsA1 002993407 Q87TC4_nD1 Q87TC4 NFUA_VIBPA VP0146 nfuA Fe/S biogenesis protein NfuA 146 1-100 f a.5 80 80.1 80.1.1 beta complex topology HesB-like domain HesB-like domain HesB-like domain 000002304 e2p2eA1 002993408 Q87TC4_nD2 Q87TC4 NFUA_VIBPA VP0146 nfuA Fe/S biogenesis protein NfuA 146 106-185 f a.11 327 327.6 327.6.1 a+b two layers Alpha-lytic protease prodomain-like Fe-S cluster assembly (FSCA) domain-like Fe-S cluster assembly (FSCA) domain-like 000345307 e2z51A1 002993409 Q87LL4_nD1 Q87LL4 Q87LL4_VIBPA VP2597 2596 6-163 f a.14 299 299.1 299.1.1 a+b complex topology YbaK/ProRS associated domain YbaK/ProRS associated domain YbaK/ProRS associated domain 000084903 e1vkiB1 002993410 Q87J77_nD1 Q87J77 Q87J77_VIBPA VPA0376 3455 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002993411 Q87J77_nD2 Q87J77 Q87J77_VIBPA VPA0376 3455 81-160,256-285 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002993412 Q87J77_nD3 Q87J77 Q87J77_VIBPA VPA0376 3455 161-255 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523444 e4oteA1 002993413 Q87KR3_nD1 Q87KR3 Q87KR3_VIBPA VP2913 DUF416 family protein 2912 1-195 f a.7 3813 3813.1 3813.1.1 alpha bundles DUF416 DUF416 DUF416 000195684 e2q9rA1 002993414 Q87FS7_nD1 Q87FS7 Q87FS7_VIBPA VPA1601 4680 1-240 f a.11 304 304.103 304.103.1 a+b two layers Alpha-beta plaits FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 002782626 e7niyA1 002993415 Q87I73_nD2 Q87I73 Q87I73_VIBPA VPA0733 3812 81-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002426650 e6g1bB1 002993416 Q87I73_nD1 Q87I73 Q87I73_VIBPA VPA0733 3812 6-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002993417 Q87HR8_nD1 Q87HR8 Q87HR8_VIBPA VPA0888 3967 26-103 f a.11 306 306.3 306.3.1 a+b two layers Glucose permease domain IIB-like eIF1-like eIF1-like 000005583 e1d1rA1 002993418 Q87Q71_nD1 Q87Q71 Q87Q71_VIBPA VP1279 DUF3187 family protein 1279 26-325 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 001568816 e4rl8C1 002993419 Q87T21_nD1 Q87T21 HSLU_VIBPA VP0249 hslU ATP-dependent protease ATPase subunit HslU 249 6-330 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002774466 e6pxkK1 002993420 Q87T21_nD2 Q87T21 HSLU_VIBPA VP0249 hslU ATP-dependent protease ATPase subunit HslU 249 331-443 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002774467 e6pxkK2 002993421 Q87RI5_nD1 Q87RI5 Q87RI5_VIBPA VP0809 809 1-300 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000980794 e4b4oC1 002993422 Q87L75_nD2 Q87L75 RL9_VIBPA VP2737 rplI 50S ribosomal protein L9 2736 56-150 f a.11 523 523.1 523.1.1 a+b two layers Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain 001952307 e5j8aDH3 002993423 Q87L75_nD1 Q87L75 RL9_VIBPA VP2737 rplI 50S ribosomal protein L9 2736 1-55 f a.11 4076 4076.1 4076.1.1 a+b two layers L9 N-domain-like L9 N-domain-like L9 N-domain-like 002754773 e7m4vH1 002993424 Q87NP5_nD1 Q87NP5 Q87NP5_VIBPA VP1823 Restriction endonuclease 1823 36-189,216-345 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001310979 e4g6vG1 002993425 Q87LB3_nD1 Q87LB3 Q87LB3_VIBPA VP2699 2698 6-150 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000145186 e3sokA1 002993426 Q87PD0_nD1 Q87PD0 Q87PD0_VIBPA VP1587 Lipoprotein 1587 36-120 f a.11 272 272.1 272.1.1 a+b two layers TolA/TonB C-terminal domain TolA/TonB C-terminal domain TolA/TonB C-terminal domain 000152223 e4g7xB1 002993427 Q87KQ4_nD2 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 21-150,451-575 f a.14 4010 4010.1 4010.1.1 a+b complex topology N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase 002714994 e6wmpC7 002993428 Q87KQ4_nD8 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 941-1040 f a.14 3681 3681.1 3681.1.1 a+b complex topology Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 001503995 e4yfkC1 002993429 Q87KQ4_nD5 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 581-710 f a.14 4042 4042.1 4042.1.1 a+b complex topology barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase 002516302 e6j9eC7 002993430 Q87KQ4_nD6 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 711-790 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001503997 e4yfkC3 002993431 Q87KQ4_nD10 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 1241-1340 f a.14 4043 4043.1 4043.1.1 a+b complex topology C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase 002462144 e5zx3C2 002993432 Q87KQ4_nD9 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 791-830,1061-1240 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 000000030 e1cr5A1 002993433 Q87KQ4_nD7 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 831-890,911-940,1041-1060 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 002714993 e6wmpC6 002993434 Q87KQ4_nD1 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 236-290 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 002591501 e6j9fC3 002993435 Q87KQ4_nD3 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 226-235,291-340 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 001270959 e3ltiA3 002993436 Q87KQ4_nD4 Q87KQ4 RPOB_VIBPA VP2922 rpoB DNA-directed RNA polymerase subunit beta 2921 151-225,341-450 f a.14 4041 4041.1 4041.1.1 a+b complex topology insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase 001504003 e4yfkC9 002993437 Q87R77_nD3 Q87R77 Q87R77_VIBPA VP0921 921 226-260,371-485 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 002576485 e6vj2A2 002993438 Q87R77_nD4 Q87R77 Q87R77_VIBPA VP0921 921 191-200,486-575 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000170036 e2jzvA1 002993439 Q87R77_nD1 Q87R77 Q87R77_VIBPA VP0921 921 41-190,576-610 f a.6 589 589.1 589.1.1 alpha arrays Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like Porin chaperone SurA, peptide-binding domain 000002396 e1m5yA1 002993440 Q87R77_nD2 Q87R77 Q87R77_VIBPA VP0921 921 271-365 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000006493 e1m5yA3 002993441 Q87HH2_nD2 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 136-220 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000384 e1nnxA1 002993442 Q87HH2_nD5 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 566-670 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001016377 e4kkrB2 002993443 Q87HH2_nD1 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 56-135 f a.6 616 616.1 616.1.1 alpha arrays S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain 000988026 e3rq9B1 002993444 Q87HH2_nD6 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 676-785 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001019468 e4kkrB1 002993445 Q87HH2_nD3 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 236-430 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001699700 e4yu6A1 002993446 Q87HH2_nD7 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 791-880 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002491447 e6dlhA4 002993447 Q87HH2_nD4 Q87HH2 Q87HH2_VIBPA VPA0993 Peptidase M11 4072 431-560 f a.5 5090 5090.2 5090.2.1 beta complex topology Viral glycoprotein, central and dimerisation domains-like Immune inhibitor A metallopeptidase C-terminal domain Immune inhibitor A metallopeptidase C-terminal domain 001699702 e4yu6A3 002993448 Q87FY7_nD3 Q87FY7 Q87FY7_VIBPA VPA1533 4612 371-445 f a.9 160 160.1 160.1.1 alpha superhelices C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 002450278 e6njpD3 002993449 Q87FY7_nD2 Q87FY7 Q87FY7_VIBPA VPA1533 4612 101-370 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002591325 e6rd9X1 002993450 Q87FY7_nD1 Q87FY7 Q87FY7_VIBPA VPA1533 4612 21-100 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001790386 e5b0oB2 002993451 Q87NU2_nD1 Q87NU2 Q87NU2_VIBPA VP1776 1776 11-135 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901951 e3k9dA2 002993452 Q87KY1_nD1 Q87KY1 FRDD_VIBPA VP2843 frdD Fumarate reductase subunit D 2842 11-125 f a.7 5069 5069.1 5069.1.3 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Fumarate reductase respiratory complex transmembrane subunits 000004242 e1kf6D1 002993453 Q87S24_nD4 Q87S24 HSCA_VIBPA VP0600 hscA Chaperone protein HscA homolog 600 521-615 f a.7 632 632.7 632.7.1 alpha bundles immunoglobulin/albumin-binding domain-like Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 001184276 e2qxlA12 002993454 Q87S24_nD3 Q87S24 HSCA_VIBPA VP0600 hscA Chaperone protein HscA homolog 600 391-500 f a.3 511 511.1 511.1.1 beta sandwiches Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), peptide-binding domain 001194404 e3n8eA1 002993455 Q87S24_nD2 Q87S24 HSCA_VIBPA VP0600 hscA Chaperone protein HscA homolog 600 191-380 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002328549 e5obwA2 002993456 Q87S24_nD1 Q87S24 HSCA_VIBPA VP0600 hscA Chaperone protein HscA homolog 600 21-190,381-390 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001919147 e5tkyA3 002993457 Q87JQ8_nD1 Q87JQ8 Q87JQ8_VIBPA VPA0190 3269 1-408 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002993458 Q87RG5_nD1 Q87RG5 Q87RG5_VIBPA VP0831 831 6-420 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002993459 Q87RG5_nD2 Q87RG5 Q87RG5_VIBPA VP0831 831 436-510 f a.11 306 306.1 306.1.1 a+b two layers Glucose permease domain IIB-like Glucose permease domain IIB Glucose permease domain IIB 000351323 e3bp3B1 002993460 Q87QD2_nD2 Q87QD2 Q87QD2_VIBPA VP1217 Alpha-acetolactate decarboxylase 1217 126-240 f a.11 304 304.124 304.124.1 a+b two layers Alpha-beta plaits Phage tail protein-like Phage tail protein-like 000066794 e2gjvE1 002993461 Q87QD2_nD1 Q87QD2 Q87QD2_VIBPA VP1217 Alpha-acetolactate decarboxylase 1217 31-125 f a.7 563 563.1 563.1.1 alpha bundles ATPD N-terminal domain-like N-terminal domain of the delta subunit of the F1F0-ATP synthase N-terminal domain of the delta subunit of the F1F0-ATP synthase 002712240 e6tmkG11 002993462 Q87JB4_nD1 Q87JB4 Q87JB4_VIBPA VPA0339 ASCH domain-containing protein 3418 1-155 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 000144031 e3s9xA1 002993463 Q79YY6_nD2 Q79YY6 Q79YY6_VIBPA VP0781 Flagellar basal-body rod protein FlgG 781 81-225 f a.5 4167 4167.1 4167.1.1 beta complex topology Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain Flagellar hook protein flgE D1 domain 002516325 e6jf2B1 002993464 Q79YY6_nD1 Q79YY6 Q79YY6_VIBPA VP0781 Flagellar basal-body rod protein FlgG 781 1-80,226-260 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002774995 e7biny2 002993465 Q87L73_nD1 Q87L73 PRIB_VIBPA VP2739 priB Primosomal replication protein N 2738 1-100 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000023729 e2cczA1 002993466 Q87I66_nD3 Q87I66 Q87I66_VIBPA VPA0740 3819 201-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001760469 e2f7aA1 002993467 Q87I66_nD1 Q87I66 Q87I66_VIBPA VPA0740 3819 21-120 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002993468 Q87I66_nD2 Q87I66 Q87I66_VIBPA VPA0740 3819 121-200,296-329 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002993469 Q87H95_nD1 Q87H95 Q87H95_VIBPA VPA1070 Lipoprotein 4149 26-95 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001546121 e3mzyA1 002993470 Q87QU6_nD1 Q87QU6 Q87QU6_VIBPA VP1053 1053 16-525 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002810966 e7oseA2 002993471 Q87H10_nD2 Q87H10 Q87H10_VIBPA VPA1155 Electron transfer flavoprotein-ubiquinone oxidoreductase 4234 446-540 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005491 e2gmhA1 002993472 Q87H10_nD1 Q87H10 Q87H10_VIBPA VPA1155 Electron transfer flavoprotein-ubiquinone oxidoreductase 4234 6-445 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002774789 e7koeC1 002993473 Q9LCJ0_nD3 Q9LCJ0 NQRF_VIBPA VP2346 nqrF Na(+)-translocating NADH-quinone reductase subunit F 2346 266-405 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 001447935 e4p6vF3 002993474 Q9LCJ0_nD2 Q9LCJ0 NQRF_VIBPA VP2346 nqrF Na(+)-translocating NADH-quinone reductase subunit F 2346 131-265 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001447934 e4p6vF2 002993475 Q9LCJ0_nD1 Q9LCJ0 NQRF_VIBPA VP2346 nqrF Na(+)-translocating NADH-quinone reductase subunit F 2346 1-125 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 001447933 e4p6vF1 002993476 Q87QP7_nD1 Q87QP7 Q87QP7_VIBPA VP1102 Methyltranfer_dom domain-containing protein 1102 1-398 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001841727 e4ztbD1 002993477 Q87QP7_nD2 Q87QP7 Q87QP7_VIBPA VP1102 Methyltranfer_dom domain-containing protein 1102 281-335 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 002055394 e5jvlD1 002993478 Q87GI4_nD2 Q87GI4 Q87GI4_VIBPA VPA1332 4411 166-253 f a.11 330 330.15 330.15.1 a+b two layers dsRBD-like VtrA protein periplasmic domain VtrA protein periplasmic domain 001877618 e5kevA1 002993479 Q87GI4_nD1 Q87GI4 Q87GI4_VIBPA VPA1332 4411 1-155 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002771295 e6zwtA1 002993480 Q87KZ7_nD5 Q87KZ7 Q87KZ7_VIBPA VP2827 2826 436-535 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002083250 e5vo5A1 002993481 Q87KZ7_nD2 Q87KZ7 Q87KZ7_VIBPA VP2827 2826 6-25,266-295 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002993482 Q87KZ7_nD1 Q87KZ7 Q87KZ7_VIBPA VP2827 2826 26-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002472915 e6d8vA1 002993483 Q87KZ7_nD4 Q87KZ7 Q87KZ7_VIBPA VP2827 2826 351-435,536-620 f 002993484 Q87KZ7_nD3 Q87KZ7 Q87KZ7_VIBPA VP2827 2826 296-350 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002993485 Q87R94_nD2 Q87R94 Q87R94_VIBPA VP0903 903 216-405 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002993486 Q87R94_nD1 Q87R94 Q87R94_VIBPA VP0903 903 1-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001296768 e4d26A1 002993487 Q87JX3_nD1 Q87JX3 Q87JX3_VIBPA VPA0125 3204 1-243 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000222442 e4iqgD1 002993488 Q87LU5_nD1 Q87LU5 Q87LU5_VIBPA VP2513 2513 1-410 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002554093 e6ki1A1 002993489 Q87LU5_nD2 Q87LU5 Q87LU5_VIBPA VP2513 2513 411-555 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 002827316 e7sunB2 002993490 Q87HZ4_nD1 Q87HZ4 Q87HZ4_VIBPA VPA0812 Phosphofructokinase 3891 6-20,41-315 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000009526 e2f02A1 002993491 Q87N78_nD3 Q87N78 Q87N78_VIBPA VP1997 ABC transporter substrate-binding protein 1997 1-50,261-400 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002993492 Q87N78_nD2 Q87N78 Q87N78_VIBPA VP1997 ABC transporter substrate-binding protein 1997 106-215 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002417770 e5gkoA3 002993493 Q87N78_nD1 Q87N78 Q87N78_VIBPA VP1997 ABC transporter substrate-binding protein 1997 56-105,216-260 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002387807 e5xu1M1 002993494 Q87N41_nD1 Q87N41 Q87N41_VIBPA VP2034 Translesion DNA synthesis-associated protein ImuA 2034 26-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001156257 e2g88A3 002993495 Q87G56_nD1 Q87G56 Q87G56_VIBPA VPA1461 Phosphate-binding protein 4540 18-273 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001522781 e1twyD1 002993496 Q87SY7_nD2 Q87SY7 Q87SY7_VIBPA VP0285 Peptidyl-prolyl cis-trans isomerase 285 76-205 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 002772506 e7dekF1 002993497 Q87SY7_nD1 Q87SY7 Q87SY7_VIBPA VP0285 Peptidyl-prolyl cis-trans isomerase 285 6-75 f a.8 3405 3405.1 3405.1.1 alpha duplicates or obligate multimers FkpA dimerization domain-like FkpA dimerization domain-like FkpA dimerization domain-like 002772507 e7dekF2 002993498 Q87KE1_nD1 Q87KE1 PURE_VIBPA VP3036 purE N5-carboxyaminoimidazole ribonucleotide mutase 3035 1-160 f a.17 2007 2007.1 2007.1.9 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 002458650 e6o55D1 002993499 Q87M38_nD3 Q87M38 Q87M38_VIBPA VP2420 2420 116-220 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001213243 e4gqnB4 002993500 Q87M38_nD2 Q87M38 Q87M38_VIBPA VP2420 2420 41-105 f a.1 70 70.3 70.3.1 beta barrels beta-clip SET domain-like SET domain-like 000185265 e3frnA3 002993501 Q87M38_nD1 Q87M38 Q87M38_VIBPA VP2420 2420 6-30 f a.21 5014 5014.1 5014.1.1 extended segments iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor 002627928 e6klsA3 002993502 Q87HG8_nD1 Q87HG8 Q87HG8_VIBPA VPA0997 4076 1-260 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000150282 e2yijA1 002993503 Q87GS0_nD1 Q87GS0 Q87GS0_VIBPA VPA1245 HD domain-containing protein 4324 1-210 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000134482 e3gw7A1 002993504 Q87MW1_nD1 Q87MW1 Q87MW1_VIBPA VP2120 2120 1-225 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001546432 e3wtcA1 002993505 Q87I77_nD1 Q87I77 Q87I77_VIBPA VPA0729 Pilus assembly protein TadF 3808 36-195 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 001890003 e5g24A1 002993506 Q87FX7_nD1 Q87FX7 Q87FX7_VIBPA VPA1543 fliQ Flagellar biosynthetic protein FliQ 4622 1-89 f a.21 5043 5043.1 5043.1.1 extended segments Sensor proteins transmembrane domains Htr2 transmembrane domain-like Htr2 transmembrane domain-like 002028283 e5jjeB1 002993507 Q87JY7_nD1 Q87JY7 Q87JY7_VIBPA VPA0111 DUF924 domain-containing protein 3190 1-178 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004570 e2i6hA1 002993508 Q87TH8_nD1 Q87TH8 Q87TH8_VIBPA VP0091 91 26-95,136-335 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002543287 e6u84A2 002993509 Q87FV3_nD3 Q87FV3 Q87FV3_VIBPA VPA1575 4654 176-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002993510 Q87FV3_nD1 Q87FV3 Q87FV3_VIBPA VPA1575 4654 6-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002993511 Q87FV3_nD2 Q87FV3 Q87FV3_VIBPA VPA1575 4654 96-175,291-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002993512 Q87TJ0_nD2 Q87TJ0 Q87TJ0_VIBPA VP0079 NAD(P)/FAD-dependent oxidoreductase 79 191-260,326-345 f a.1 1 1.10 1.10.1 beta barrels cradle loop barrel HI0933 barrel domain-like HI0933 barrel domain-like 001584478 e3v76A2 002993513 Q87TJ0_nD1 Q87TJ0 Q87TJ0_VIBPA VP0079 NAD(P)/FAD-dependent oxidoreductase 79 6-190,346-395 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000009288 e2gqfA3 002993514 Q87TJ0_nD3 Q87TJ0 Q87TJ0_VIBPA VP0079 NAD(P)/FAD-dependent oxidoreductase 79 261-325 f a.6 102 102.2 102.2.1 alpha arrays HhH/H2TH H2TH H2TH 000003046 e2gqfA2 002993515 Q87QB2_nD1 Q87QB2 Q87QB2_VIBPA VP1238 Exported protein 1238 16-170 f a.21 5041 5041.1 5041.1.1 extended segments F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 000454311 e2xqtE1 002993516 Q87S57_nD2 Q87S57 Q87S57_VIBPA VP0567 567 371-465 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000153873 e4he6A1 002993517 Q87S57_nD1 Q87S57 Q87S57_VIBPA VP0567 567 6-205,266-370 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001715987 e5d88A1 002993518 Q87SB5_nD2 Q87SB5 Q87SB5_VIBPA VP0509 xerD Tyrosine recombinase XerD 509 121-300 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000002807 e1a0pA1 002993519 Q87SB5_nD1 Q87SB5 Q87SB5_VIBPA VP0509 xerD Tyrosine recombinase XerD 509 6-120 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002993520 Q87QV0_nD1 Q87QV0 Q87QV0_VIBPA VP1049 Chemotaxis protein 1049 6-185 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002740055 e6so3B1 002993521 Q87QV0_nD2 Q87QV0 Q87QV0_VIBPA VP1049 Chemotaxis protein 1049 186-215,236-270 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002993522 Q87QV0_nD3 Q87QV0 Q87QV0_VIBPA VP1049 Chemotaxis protein 1049 291-330 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002330459 e6fkfp1 002993523 Q87MV3_nD1 Q87MV3 NDPA_VIBPA VP2128 Nucleoid-associated protein VP2128 2128 1-190 f a.11 233 233.1 233.1.1 a+b two layers MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain 000075975 e1jfmD1 002993524 Q87MV3_nD2 Q87MV3 NDPA_VIBPA VP2128 Nucleoid-associated protein VP2128 2128 191-285 f a.6 3208 3208.1 3208.1.1 alpha arrays RNA polymerase-associated protein Gp33 RNA polymerase-associated protein Gp33 RNA polymerase-associated protein Gp33 000146988 e3tbiA1 002993525 Q87MV3_nD3 Q87MV3 NDPA_VIBPA VP2128 Nucleoid-associated protein VP2128 2128 286-330 f a.3 1133 1133.1 1133.1.1 beta sandwiches Immunomodulator A46 N-terminal domain Immunomodulator A46 N-terminal domain Immunomodulator A46 N-terminal domain 001930620 e5ezuA1 002993526 Q87TE0_nD2 Q87TE0 HSLO_VIBPA VP0130 hslO 33 kDa chaperonin 130 231-280 f a.19 4203 4203.1 4203.1.1 few secondary structure elements HSP33 redox switch-like HSP33 redox switch-like HSP33 redox switch-like 000008083 e1vzyA2 002993527 Q87TE0_nD1 Q87TE0 HSLO_VIBPA VP0130 hslO 33 kDa chaperonin 130 1-230 f a.14 848 848.1 848.1.1 a+b complex topology Hsp33 domain Hsp33 domain Hsp33 domain 000142183 e3m7mX1 002993528 Q87PA3_nD2 Q87PA3 Q87PA3_VIBPA VP1614 PcfJ-like protein 1614 236-300 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002566250 e6pwpF1 002993529 Q87PA3_nD1 Q87PA3 Q87PA3_VIBPA VP1614 PcfJ-like protein 1614 61-225 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002818710 e7rdrC2 002993530 Q87PA3_nD3 Q87PA3 Q87PA3_VIBPA VP1614 PcfJ-like protein 1614 1-60,226-235,301-450 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 001842935 e5fx8U2 002993531 Q87SB2_nD1 Q87SB2 Q87SB2_VIBPA VP0512 512 1-120 f a.11 304 304.116 304.116.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor 002555910 e6szsz4 002993532 Q87SB2_nD2 Q87SB2 Q87SB2_VIBPA VP0512 512 121-205 f a.11 330 330.3 330.3.1 a+b two layers dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like 002390986 e6gxnv2 002993533 Q87SB2_nD3 Q87SB2 Q87SB2_VIBPA VP0512 512 206-260 f a.11 330 330.3 330.3.1 a+b two layers dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like 000005822 e1gqeA4 002993534 Q87J22_nD2 Q87J22 Q87J22_VIBPA VPA0431 3510 151-304 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001710397 e3breB2 002993535 Q87J22_nD1 Q87J22 Q87J22_VIBPA VPA0431 3510 11-150 f a.1 2 2.10 2.10.1 beta barrels OB-fold CheW CheW 000164917 e2ho9A1 002993536 Q87KM6_nD1 Q87KM6 Q87KM6_VIBPA VP2951 2950 1-65 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 001405794 e4w4mK1 002993537 Q87KM6_nD2 Q87KM6 Q87KM6_VIBPA VP2951 2950 96-280 f a.7 5081 5081.1 5081.1.1 alpha bundles Rhomboid-like Rhomboid-like Rhomboid-like 001388870 e4qo2A1 002993538 Q87NG0_nD2 Q87NG0 Q87NG0_VIBPA VP1908 1908 31-195 f a.12 3488 3488.1 3488.1.1 a+b three layers Putative sensor histidine kinase domain Putative sensor histidine kinase domain Putative sensor histidine kinase domain 001506242 e2qhkA1 002993539 Q87NG0_nD1 Q87NG0 Q87NG0_VIBPA VP1908 1908 1-30,196-225 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002993540 Q87NG0_nD3 Q87NG0 Q87NG0_VIBPA VP1908 1908 231-315 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002833340 e7n0eB1 002993541 Q87NG0_nD4 Q87NG0 Q87NG0_VIBPA VP1908 1908 316-450 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001095401 e4gt8A1 002993542 Q87FT7_nD1 Q87FT7 Q87FT7_VIBPA VPA1591 4670 1-215 f a.11 304 304.103 304.103.1 a+b two layers Alpha-beta plaits FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 002327377 e6czpC1 002993543 Q87I34_nD1 Q87I34 Q87I34_VIBPA VPA0772 Nitrogenase-stabilizing/protective protein NifW 3851 6-75 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 002492230 e6jcxF1 002993544 Q87K95_nD1 Q87K95 Q87K95_VIBPA VPA0003 3082 1-310 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002993545 Q87P62_nD3 Q87P62 Q87P62_VIBPA VP1656 1656 246-325 f a.7 603 603.5 603.5.1 alpha bundles STAT-like FlgN-like FlgN-like 001840073 e5b3dB1 002993546 Q87P62_nD2 Q87P62 Q87P62_VIBPA VP1656 1656 146-175 f a.6 1014 1014.1 1014.1.1 alpha arrays AopB AopB AopB 001697351 e3wxxF1 002993547 Q87P62_nD1 Q87P62 Q87P62_VIBPA VP1656 1656 66-125 f 002993548 Q87LT3_nD1 Q87LT3 ZAPD_VIBPA VP2528 zapD Cell division protein ZapD 2528 11-175 f a.7 4946 4946.1 4946.1.1 alpha bundles helical domain in YacF-like proteins helical domain in YacF-like proteins helical domain in YacF-like proteins 000055065 e2oezB2 002993549 Q87LT3_nD2 Q87LT3 ZAPD_VIBPA VP2528 zapD Cell division protein ZapD 2528 1-10,176-245 f a.3 4287 4287.1 4287.1.1 beta sandwiches beta sandwich domain in YacF-like proteins beta sandwich domain in YacF-like proteins beta sandwich domain in YacF-like proteins 000032359 e2oezB1 002993550 Q87JS3_nD3 Q87JS3 Q87JS3_VIBPA VPA0175 3254 156-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002993551 Q87JS3_nD2 Q87JS3 Q87JS3_VIBPA VPA0175 3254 86-155,271-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549389 e4y0mB1 002993552 Q87JS3_nD1 Q87JS3 Q87JS3_VIBPA VPA0175 3254 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002993553 Q87PH4_nD1 Q87PH4 Q87PH4_VIBPA VP1528 1528 1-285 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000419604 e3puyG1 002993554 Q87NX5_nD2 Q87NX5 Q87NX5_VIBPA VP1743 Threonine transporter RhtB 1743 71-95,186-210 f a.10 1079 1079.1 1079.1.1 alpha complex topology Transmembrane reductase CcdA Transmembrane reductase CcdA Transmembrane reductase CcdA 001838816 e2n4xA1 002993555 Q87NX5_nD1 Q87NX5 Q87NX5_VIBPA VP1743 Threonine transporter RhtB 1743 6-70,101-185 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002448171 e6d91A1 002993556 Q87PY1_nD1 Q87PY1 Q87PY1_VIBPA VP1369 Plug domain-containing protein 1369 26-120 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002468382 e6i1yC1 002993557 Q87K15_nD1 Q87K15 Q87K15_VIBPA VPA0083 2-dehydro-3-deoxy-phosphogluconate aldolase 3162 1-205 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001833029 e4e38C1 002993558 Q87KF2_nD1 Q87KF2 Q87KF2_VIBPA VP3025 3024 6-255 f a.17 2003 2003.1 2003.1.9 a/b three-layered sandwiches Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins 000100110 e2nvuA1 002993559 Q87IB5_nD1 Q87IB5 Q87IB5_VIBPA VPA0691 3770 1-140 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 000235717 e3zpcA2 002993560 Q87GR1_nD3 Q87GR1 Q87GR1_VIBPA VPA1254 4333 211-335 f a.6 102 102.1 102.1.4 alpha arrays HhH/H2TH SAM/DNA-glycosylase Nop C-terminal domain 001563125 e3icxB2 002993561 Q87GR1_nD2 Q87GR1 Q87GR1_VIBPA VPA1254 4333 111-210 f a.10 606 606.1 606.1.1 alpha complex topology Nop N-terminal domain Nop N-terminal domain Nop N-terminal domain 001558416 e3nviA2 002993562 Q87GR1_nD1 Q87GR1 Q87GR1_VIBPA VPA1254 4333 6-110 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 002605105 e6kvoA1 002993563 Q87SR9_nD1 Q87SR9 Q87SR9_VIBPA VP0353 Acetolactate synthase small subunit 353 1-80 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005252 e2f1fA1 002993564 Q87SR9_nD2 Q87SR9 Q87SR9_VIBPA VP0353 Acetolactate synthase small subunit 353 81-155 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005253 e2f1fA2 002993565 Q87IC0_nD1 Q87IC0 Q87IC0_VIBPA VPA0686 DUF58 domain-containing protein 3765 11-35,61-320 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 002765462 e7o4j42 002993566 Q87GZ0_nD2 Q87GZ0 Q87GZ0_VIBPA VPA1175 4254 146-275 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 002114607 e5wqkA1 002993567 Q87GZ0_nD1 Q87GZ0 Q87GZ0_VIBPA VPA1175 4254 1-145 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 000378617 e3aayA1 002993568 Q87NE0_nD1 Q87NE0 Q87NE0_VIBPA VP1928 1928 47-180 f a.19 139 139.2 139.2.1 few secondary structure elements Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif 000165107 e2ozyA1 002993569 Q87FI7_nD1 Q87FI7 Q87FI7_VIBPA VPA1692 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone 4771 6-40 f a.21 3479 3479.1 3479.1.1 extended segments Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain Histidine kinase receptor QseC membrane domain 000184744 e2kseA1 002993570 P40606_nD3 P40606 HFLC_VIBPA VP2814 hflC Protein HflC 2813 241-315 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 000184859 e2p22A1 002993571 P40606_nD2 P40606 HFLC_VIBPA VP2814 hflC Protein HflC 2813 61-205 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000996940 e3bk6B1 002993572 P40606_nD1 P40606 HFLC_VIBPA VP2814 hflC Protein HflC 2813 21-60 f a.3 3529 3529.1 3529.1.1 beta sandwiches Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain 001434207 e4v60I2 002993573 Q87SU5_nD1 Q87SU5 Q87SU5_VIBPA VP0327 327 6-333 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 000869458 e4jyxA1 002993574 Q87FV4_nD2 Q87FV4 MDTL_VIBPA VPA1574 mdtL Multidrug resistance protein MdtL 4653 191-395 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002993575 Q87FV4_nD1 Q87FV4 MDTL_VIBPA VPA1574 mdtL Multidrug resistance protein MdtL 4653 1-190 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001697376 e4yb9D1 002993576 Q87JG9_nD1 Q87JG9 Q87JG9_VIBPA VPA0284 3363 16-115 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 001447828 e4wh9A1 002993577 Q87N40_nD5 Q87N40 Q87N40_VIBPA VP2035 UmuC domain-containing protein 2035 351-385 f 002993578 Q87N40_nD2 Q87N40 Q87N40_VIBPA VP2035 UmuC domain-containing protein 2035 1-20,71-165 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 000363452 e3gqcB3 002993579 Q87N40_nD1 Q87N40 Q87N40_VIBPA VP2035 UmuC domain-containing protein 2035 21-70 f a.12 850 850.1 850.1.1 a+b three layers Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like 001759001 e1im4A2 002993580 Q87N40_nD6 Q87N40 Q87N40_VIBPA VP2035 UmuC domain-containing protein 2035 403-465 f a.1 270 270.2 270.2.1 beta barrels FMT C-terminal domain-like lantibiotic immunity protein SpaI lantibiotic immunity protein SpaI 002141448 e5xhbA1 002993581 Q87N40_nD4 Q87N40 Q87N40_VIBPA VP2035 UmuC domain-containing protein 2035 226-335 f a.11 302 302.1 302.1.1 a+b two layers Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain 000363451 e3gqcB2 002993582 Q87N40_nD3 Q87N40 Q87N40_VIBPA VP2035 UmuC domain-containing protein 2035 166-225 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000363450 e3gqcB1 002993583 Q87JP4_nD1 Q87JP4 Q87JP4_VIBPA VPA0204 Cryptochrome/photolyase family protein 3283 1-225 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009796 e1dnpA2 002993584 Q87JP4_nD2 Q87JP4 Q87JP4_VIBPA VPA0204 Cryptochrome/photolyase family protein 3283 216-514 f a.10 182 182.1 182.1.1 alpha complex topology Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain 001033146 e3zxsB1 002993585 Q87P55_nD1 Q87P55 Q87P55_VIBPA VP1663 1663 1-114 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004563 e2c2lA1 002993586 Q87NN4_nD1 Q87NN4 Q87NN4_VIBPA VP1834 MazG domain-containing protein 1834 6-80 f a.7 159 159.1 159.1.2 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases MazG-related 002574304 e6sqwA1 002993587 Q87R17_nD4 Q87R17 Q87R17_VIBPA VP0981 981 486-745 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 000087865 e1wraB1 002993588 Q87R17_nD3 Q87R17 Q87R17_VIBPA VP0981 981 186-465 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002723216 e7c86A1 002993589 Q87R17_nD1 Q87R17 Q87R17_VIBPA VP0981 981 6-70 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 002708991 e6lgvA1 002993590 Q87R17_nD2 Q87R17 Q87R17_VIBPA VP0981 981 71-180 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002062917 e5jeaI1 002993591 Q79YX7_nD2 Q79YX7 Q79YX7_VIBPA VP1558 1558 363-435 f a.1 3454 3454.1 3454.1.1 beta barrels GspC HR domain/PilP-like GspC HR domain/PilP-like GspC HR domain/PilP-like 000185990 e2ivwA1 002993592 Q79YX7_nD1 Q79YX7 Q79YX7_VIBPA VP1558 1558 1-128,162-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001231018 e4kfrA2 002993593 Q87I38_nD1 Q87I38 KATG2_VIBPA VPA0768 katG2 Catalase-peroxidase 2 3847 16-430 f a.10 136 136.1 136.1.1 alpha complex topology Heme-dependent peroxidases Heme-dependent peroxidases Heme-dependent peroxidases 001489699 e3wxoA1 002993594 Q87I38_nD2 Q87I38 KATG2_VIBPA VPA0768 katG2 Catalase-peroxidase 2 3847 436-724 f a.10 136 136.1 136.1.1 alpha complex topology Heme-dependent peroxidases Heme-dependent peroxidases Heme-dependent peroxidases 001489700 e3wxoA2 002993595 Q87PQ7_nD2 Q87PQ7 Q87PQ7_VIBPA VP1444 Isoleucyl-tRNA synthetase 1444 126-190,251-269,296-645 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000989529 e2yeqB2 002993596 Q87PQ7_nD1 Q87PQ7 Q87PQ7_VIBPA VP1444 Isoleucyl-tRNA synthetase 1444 11-125 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000989528 e2yeqB1 002993597 Q87LL3_nD3 Q87LL3 Q87LL3_VIBPA VP2598 Small-conductance mechanosensitive channel 2597 186-288 f a.11 304 304.39 304.39.1 a+b two layers Alpha-beta plaits Mechanosensitive channel protein MscS (YggB), C-terminal domain Mechanosensitive channel protein MscS (YggB), C-terminal domain 001564990 e5ajiA3 002993598 Q87LL3_nD2 Q87LL3 Q87LL3_VIBPA VP2598 Small-conductance mechanosensitive channel 2597 121-185 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002832655 e7dluA3 002993599 Q87LL3_nD1 Q87LL3 Q87LL3_VIBPA VP2598 Small-conductance mechanosensitive channel 2597 31-115 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002566250 e6pwpF1 002993600 Q87QW7_nD1 Q87QW7 Q87QW7_VIBPA VP1032 1032 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002993601 Q87QW7_nD2 Q87QW7 Q87QW7_VIBPA VP1032 1032 136-235 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001148332 e4knyB4 002993602 Q87M61_nD1 Q87M61 Q87M61_VIBPA VP2397 Aldose 1-epimerase 2397 1-343 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 000042245 e1snzA1 002993603 Q87I90_nD2 Q87I90 Q87I90_VIBPA VPA0716 3795 206-270 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001761263 e3mn2A1 002993604 Q87I90_nD1 Q87I90 Q87I90_VIBPA VPA0716 3795 6-205 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000350052 e3er6F1 002993605 Q87I90_nD3 Q87I90 Q87I90_VIBPA VPA0716 3795 271-320 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002670619 e6swiA2 002993606 Q87RH3_nD1 Q87RH3 HEMH_VIBPA VP0823 hemH Ferrochelatase 823 16-320 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002796976 e7l78A1 002993607 Q87L82_nD1 Q87L82 Q87L82_VIBPA VP2730 CheX domain-containing protein 2729 1-153 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 002713846 e6vpwB1 002993608 Q87JH4_nD1 Q87JH4 Q87JH4_VIBPA VPA0279 DUF3012 domain-containing protein 3358 23-85 f a.7 192 192.29 192.29.1 alpha bundles Long alpha-hairpin bMERB domain (bivalent Mical/EHBP Rab binding) bMERB domain (bivalent Mical/EHBP Rab binding) 001883384 e5szjB2 002993609 Q87JE9_nD1 Q87JE9 Q87JE9_VIBPA VPA0304 VOC domain-containing protein 3383 6-115 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001395094 e2rbbA3 002993610 Q87RC8_nD1 Q87RC8 Q87RC8_VIBPA VP0869 AB hydrolase-1 domain-containing protein 869 1-284 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002664697 e7al6C1 002993611 Q87P16_nD1 Q87P16 Q87P16_VIBPA VP1702 Type III secretion regulator ExsE 1702 28-65 f a.21 3477 3477.1 3477.1.1 extended segments ExsE ExsE ExsE 001758640 e3kxyW1 002993612 Q87JW2_nD1 Q87JW2 Q87JW2_VIBPA VPA0136 3215 6-280 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000182717 e3rm5A2 002993613 Q87GM9_nD1 Q87GM9 Q87GM9_VIBPA VPA1286 4365 6-138 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000177170 e3nqoA1 002993614 Q87KD9_nD3 Q87KD9 Q87KD9_VIBPA VP3038 3037 111-150 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001831788 e5iyaI1 002993615 Q87KD9_nD4 Q87KD9 Q87KD9_VIBPA VP3038 3037 151-189 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001108102 e4c2mI2 002993616 Q87KD9_nD1 Q87KD9 Q87KD9_VIBPA VP3038 3037 21-55 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712015 e4rulA3 002993617 Q87KD9_nD2 Q87KD9 Q87KD9_VIBPA VP3038 3037 61-100 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001712013 e4rulA1 002993618 Q87IS2_nD1 Q87IS2 Q87IS2_VIBPA VPA0533 3613 6-140 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000114497 e1y9wB1 002993619 Q87PK4_nD1 Q87PK4 Q87PK4_VIBPA VP1498 1498 1-230 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002993620 Q87K84_nD1 Q87K84 Q87K84_VIBPA VPA0014 TPR_REGION domain-containing protein 3093 26-220 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002774007 e6vbv41 002993621 Q87P76_nD3 Q87P76 Q87P76_VIBPA VP1642 1642 391-435 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001240751 e4mb3A8 002993622 Q87P76_nD4 Q87P76 Q87P76_VIBPA VP1642 1642 461-515 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001240751 e4mb3A8 002993623 Q87P76_nD1 Q87P76 Q87P76_VIBPA VP1642 1642 36-265 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001282921 e3w94B1 002993624 Q87P76_nD2 Q87P76 Q87P76_VIBPA VP1642 1642 271-385 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002411955 e6bqmA2 002993625 Q87JN0_nD1 Q87JN0 Q87JN0_VIBPA VPA0218 Nudix hydrolase domain-containing protein 3297 1-179 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 001890432 e5i8uC1 002993626 Q87HY1_nD2 Q87HY1 Q87HY1_VIBPA VPA0825 3904 131-255 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002993627 Q87HY1_nD1 Q87HY1 Q87HY1_VIBPA VPA0825 3904 21-130,256-315 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002993628 Q87HY1_nD3 Q87HY1 Q87HY1_VIBPA VPA0825 3904 316-430 f a.7 6157 6157.1 6157.1.1 alpha bundles GKAP homology domain 1 GKAP homology domain 1 GKAP homology domain 1 001388515 e4r0yB1 002993629 Q87FY6_nD3 Q87FY6 Q87FY6_VIBPA VPA1534 4613 126-235 f a.11 298 298.4 298.4.1 a+b two layers FwdE/GAPDH domain-like V-type ATPase subunit E V-type ATPase subunit E 001807471 e5b0oG1 002993630 Q87FY6_nD2 Q87FY6 Q87FY6_VIBPA VPA1534 4613 76-110 f a.21 3464 3464.1 3464.1.1 extended segments Helical region in V-type proton ATPase subunit E Helical region in V-type proton ATPase subunit E Helical region in V-type proton ATPase subunit E 001509030 e4dt0A2 002993631 Q87FY6_nD1 Q87FY6 Q87FY6_VIBPA VPA1534 4613 46-75 f a.17 7519 7519.1 7519.1.1 a/b three-layered sandwiches ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit 001919020 e5lqyG1 002993632 Q87TK2_nD1 Q87TK2 Q87TK2_VIBPA VP0067 67 11-100 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002993633 Q87TK2_nD2 Q87TK2 Q87TK2_VIBPA VP0067 67 101-310 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002993634 Q87J31_nD1 Q87J31 Q87J31_VIBPA VPA0422 3501 6-340 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 001921594 e5b58A1 002993635 Q87QQ3_nD1 Q87QQ3 Q87QQ3_VIBPA VP1096 tryptophan--tRNA ligase 1096 11-335 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000156774 e1yi8B1 002993636 Q87LY4_nD1 Q87LY4 ERPA_VIBPA VP2474 erpA Iron-sulfur cluster insertion protein ErpA 2474 6-110 f a.5 80 80.1 80.1.1 beta complex topology HesB-like domain HesB-like domain HesB-like domain 000162013 e2apnA1 002993637 Q87P66_nD1 Q87P66 Q87P66_VIBPA VP1652 1652 16-75 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002833342 e7n0eA1 002993638 Q87P66_nD2 Q87P66 Q87P66_VIBPA VP1652 1652 86-155 f a.10 3843 3843.1 3843.1.1 alpha complex topology NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K NADH-quinone oxidoreductase subunit K 002452585 e6nbqE1 002993639 Q87GR3_nD1 Q87GR3 Q87GR3_VIBPA VPA1252 DUF3429 domain-containing protein 4331 6-148 f a.7 633 633.7 633.7.1 alpha bundles Bromodomain-like Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 000054250 e3dbyE1 002993640 Q87KW9_nD2 Q87KW9 Q87KW9_VIBPA VP2856 2855 211-300 f a.11 327 327.7 327.7.1 a+b two layers Alpha-lytic protease prodomain-like Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 000152992 e3j1zP1 002993641 Q87KW9_nD1 Q87KW9 Q87KW9_VIBPA VP2856 2855 6-210 f a.7 5082 5082.1 5082.1.1 alpha bundles Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like Cation efflux protein transmembrane domain-like 002658342 e6xpdA1 002993642 Q87JG0_nD2 Q87JG0 Q87JG0_VIBPA VPA0293 3372 71-175 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000437313 e3zqiB2 002993643 Q87JG0_nD1 Q87JG0 Q87JG0_VIBPA VPA0293 3372 1-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000405876 e3pasB1 002993644 Q87KG8_nD2 Q87KG8 Q87KG8_VIBPA VP3009 3008 166-265 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001761512 e3oioA1 002993645 Q87KG8_nD1 Q87KG8 Q87KG8_VIBPA VP3009 3008 6-165 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002516467 e6nwoD1 002993646 Q87P43_nD1 Q87P43 Q87P43_VIBPA VP1675 1675 11-225 f a.8 4336 4336.1 4336.1.1 alpha duplicates or obligate multimers YheA/YmcA-like YheA/YmcA-like YheA/YmcA-like 000004404 e2pihB1 002993647 Q87P43_nD2 Q87P43 Q87P43_VIBPA VP1675 1675 226-345 f a.3 4104 4104.1 4104.1.1 beta sandwiches EscU C-terminal domain-like EscU C-terminal domain-like EscU C-terminal domain-like 000145352 e3t7yA1 002993648 P66368_nD1 P66368 RS11_VIBPA VP0280 rpsK 30S ribosomal protein S11 280 16-125 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001859982 e5j8aAK1 002993649 Q87I32_nD1 Q87I32 Q87I32_VIBPA VPA0774 lactoylglutathione lyase 3853 1-65 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160758 e3zi1A8 002993650 Q87I32_nD2 Q87I32 Q87I32_VIBPA VPA0774 lactoylglutathione lyase 3853 66-125 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001388676 e4mtsA2 002993651 Q87RG4_nD1 Q87RG4 SYQ_VIBPA VP0832 glnS Glutamine--tRNA ligase 832 11-260 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002574444 e3aiiA1 002993652 Q87RG4_nD2 Q87RG4 SYQ_VIBPA VP0832 glnS Glutamine--tRNA ligase 832 341-455 f a.1 239 239.1 239.1.1 beta barrels Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like 001130776 e1qtqA3 002993653 Q87RG4_nD3 Q87RG4 SYQ_VIBPA VP0832 glnS Glutamine--tRNA ligase 832 261-340,456-555 f a.1 239 239.1 239.1.1 beta barrels Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like 002488232 e4h3sA3 002993654 Q87HR9_nD1 Q87HR9 Q87HR9_VIBPA VPA0887 DUF3319 domain-containing protein 3966 1-50 f a.11 214 214.1 214.1.1 a+b two layers SH2 SH2 SH2 001003785 e2jv8A1 002993655 Q87HR9_nD2 Q87HR9 Q87HR9_VIBPA VPA0887 DUF3319 domain-containing protein 3966 71-120 f a.12 223 223.2 223.2.1 a+b three layers Profilin-like profilin-like profilin-like 000348749 e2jkgA1 002993656 Q87KD6_nD1 Q87KD6 Q87KD6_VIBPA VP3041 LysM domain-containing protein 3040 36-90 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002620372 e6u5kL1 002993657 Q87KD6_nD2 Q87KD6 Q87KD6_VIBPA VP3041 LysM domain-containing protein 3040 136-230 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001792625 e3jc8Tl2 002993658 Q87KD6_nD3 Q87KD6 Q87KD6_VIBPA VP3041 LysM domain-containing protein 3040 246-355 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001005534 e3w1eA3 002993659 P40609_nD2 P40609 HMP_VIBPA VP2809 hmp Flavohemoprotein 2808 151-250 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000021396 e1gvhA1 002993660 P40609_nD1 P40609 HMP_VIBPA VP2809 hmp Flavohemoprotein 2808 1-150 f a.6 106 106.1 106.1.1 alpha arrays Globin-like Globin-like Globin-like 001211070 e4g1vA4 002993661 P40609_nD3 P40609 HMP_VIBPA VP2809 hmp Flavohemoprotein 2808 251-390 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 000010241 e1gvhA3 002993662 Q877N6_nD1 Q877N6 Q877N6_VIBPA VP1581VPA0906 ABC transporter permease 1582 6-35 f a.21 6169 6169.1 6169.1.1 extended segments Transmembrane segment of lysosome-associated membrane glycoprotein 2 Transmembrane segment of lysosome-associated membrane glycoprotein 2 Transmembrane segment of lysosome-associated membrane glycoprotein 2 002131258 e2mjoB1 002993663 Q87JH5_nD1 Q87JH5 IDI2_VIBPA VPA0278 fni Isopentenyl-diphosphate delta-isomerase 3357 1-335 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000356511 e2zrzD1 002993664 Q87M76_nD1 Q87M76 Q87M76_VIBPA VP2382 2382 36-250 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004911 e1pw4A1 002993665 Q87M76_nD2 Q87M76 Q87M76_VIBPA VP2382 2382 266-460 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004912 e1pw4A2 002993666 Q87NV3_nD3 Q87NV3 Q87NV3_VIBPA VP1765 HTH araC/xylS-type domain-containing protein 1765 221-270 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001762220 e3w6vA1 002993667 Q87NV3_nD2 Q87NV3 Q87NV3_VIBPA VP1765 HTH araC/xylS-type domain-containing protein 1765 171-220 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001839954 e5chhA2 002993668 Q87NV3_nD1 Q87NV3 Q87NV3_VIBPA VP1765 HTH araC/xylS-type domain-containing protein 1765 1-170 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002565054 e6p7rA1 002993669 Q87TI4_nD4 Q87TI4 Q87TI4_VIBPA VP0085 Diacylglycerol kinase catalytic region 85 356-545 f a.3 4004 4004.1 4004.1.1 beta sandwiches NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like 000259976 e3vzbA1 002993670 Q87TI4_nD3 Q87TI4 Q87TI4_VIBPA VP0085 Diacylglycerol kinase catalytic region 85 236-355 f a.17 2007 2007.1 2007.1.4 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain 000010646 e2qv7A2 002993671 Q87TI4_nD1 Q87TI4 Q87TI4_VIBPA VP0085 Diacylglycerol kinase catalytic region 85 1-70 f a.6 6072 6072.1 6072.1.1 alpha arrays Transmembrane domain of envelope protein E Transmembrane domain of envelope protein E Transmembrane domain of envelope protein E 002706932 e7kvbC1 002993672 Q87TI4_nD2 Q87TI4 Q87TI4_VIBPA VP0085 Diacylglycerol kinase catalytic region 85 71-235 f a.17 2007 2007.2 2007.2.3 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like (Phosphotyrosine protein) phosphatases II 000289918 e1yz4A1 002993673 Q87QL3_nD2 Q87QL3 Q87QL3_VIBPA VP1136 1136 211-275 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001822146 e5ep1A1 002993674 Q87QL3_nD1 Q87QL3 Q87QL3_VIBPA VP1136 1136 11-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001822143 e5ep0A1 002993675 Q87QL3_nD3 Q87QL3 Q87QL3_VIBPA VP1136 1136 276-315 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002509 e1umqA1 002993676 Q87RF8_nD4 Q87RF8 Q87RF8_VIBPA VP0839 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) 839 441-545 f a.11 331 331.2 331.2.1 a+b two layers TBP-like Phosphoglucomutase, C-terminal domain Phosphoglucomutase, C-terminal domain 002074420 e2fuvB6 002993677 Q87RF8_nD3 Q87RF8 Q87RF8_VIBPA VP0839 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) 839 321-440 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002071920 e2fuvB3 002993678 Q87RF8_nD1 Q87RF8 Q87RF8_VIBPA VP0839 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) 839 1-205 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002074419 e2fuvB5 002993679 Q87RF8_nD2 Q87RF8 Q87RF8_VIBPA VP0839 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) 839 206-320 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002600578 e2fuvB4 002993680 Q87J70_nD1 Q87J70 Q87J70_VIBPA VPA0383 Cupin_7 domain-containing protein 3462 6-160 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001872983 e3cjxA1 002993681 Q87MU3_nD3 Q87MU3 Q87MU3_VIBPA VP2138 KfrA_N domain-containing protein 2138 261-335 f a.21 3967 3967.1 3967.1.1 extended segments Mitoribosomal protein mS26 Mitoribosomal protein mS26 Mitoribosomal protein mS26 001551339 e5aj4Ad1 002993682 Q87MU3_nD1 Q87MU3 Q87MU3_VIBPA VP2138 KfrA_N domain-containing protein 2138 11-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002571 e2cyyA1 002993683 Q87MU3_nD2 Q87MU3 Q87MU3_VIBPA VP2138 KfrA_N domain-containing protein 2138 111-260 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002816307 e6z26B1 002993684 Q87J66_nD1 Q87J66 Q87J66_VIBPA VPA0387 3466 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002993685 Q87J66_nD2 Q87J66 Q87J66_VIBPA VPA0387 3466 81-160,276-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002600822 e3hhfA1 002993686 Q87J66_nD3 Q87J66 Q87J66_VIBPA VPA0387 3466 131-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002993687 Q87RU2_nD1 Q87RU2 Q87RU2_VIBPA VP0684 thiL Thiamine-monophosphate kinase 684 6-140 f a.12 301 301.2 301.2.1 a+b three layers Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like 002833283 e7du3B2 002993688 Q87RU2_nD2 Q87RU2 Q87RU2_VIBPA VP0684 thiL Thiamine-monophosphate kinase 684 141-315 f a.11 304 304.111 304.111.1 a+b two layers Alpha-beta plaits PurM C-terminal domain-like PurM C-terminal domain-like 001681379 e5cm7A2 002993689 Q87LA8_nD3 Q87LA8 Q87LA8_VIBPA VP2704 2703 141-160,206-270 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002140700 e5mp2A1 002993690 Q87LA8_nD4 Q87LA8 Q87LA8_VIBPA VP2704 2703 271-310,331-380,401-525 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002468382 e6i1yC1 002993691 Q87LA8_nD2 Q87LA8 Q87LA8_VIBPA VP2704 2703 161-200 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 002722150 e7ah95J3 002993692 Q87LA8_nD1 Q87LA8 Q87LA8_VIBPA VP2704 2703 71-140 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 002722150 e7ah95J3 002993693 Q87KI9_nD3 Q87KI9 HEM3_VIBPA VP2988 hemC Porphobilinogen deaminase 2987 231-305 f a.11 330 330.4 330.4.1 a+b two layers dsRBD-like Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 000070105 e1ah5A1 002993694 Q87KI9_nD1 Q87KI9 HEM3_VIBPA VP2988 hemC Porphobilinogen deaminase 2987 6-100,201-230 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001520888 e4htgA2 002993695 Q87KI9_nD2 Q87KI9 HEM3_VIBPA VP2988 hemC Porphobilinogen deaminase 2987 101-200 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001519488 e1ah5A2 002993696 Q87QK0_nD1 Q87QK0 Q87QK0_VIBPA VP1149 Peptidyl-prolyl cis-trans isomerase 1149 1-164 f a.1 75 75.1 75.1.1 beta barrels Cyclophilin-like Cyclophilin-like Cyclophilin-like 002790983 e7rfdA1 002993697 Q87RT6_nD1 Q87RT6 THII_VIBPA VP0691 thiI tRNA sulfurtransferase 691 1-80 f a.11 304 304.120 304.120.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in ThiI Ferredoxin-like domain in ThiI 000005447 e1vbkA1 002993698 Q87RT6_nD2 Q87RT6 THII_VIBPA VP0691 thiI tRNA sulfurtransferase 691 81-175 f a.11 4143 4143.1 4143.1.1 a+b two layers THUMP domain-like THUMP domain-like THUMP domain-like 000005674 e1vbkA2 002993699 Q87RT6_nD3 Q87RT6 THII_VIBPA VP0691 thiI tRNA sulfurtransferase 691 176-395 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 001290735 e4kr6A2 002993700 Q87RT6_nD4 Q87RT6 THII_VIBPA VP0691 thiI tRNA sulfurtransferase 691 396-480 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 000134202 e3gk5A1 002993701 Q87GS9_nD1 Q87GS9 Q87GS9_VIBPA VPA1236 L-methionine/branched-chain amino acid transporter 4315 6-420 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000415013 e3ob6B1 002993702 Q87S77_nD1 Q87S77 Q87S77_VIBPA VP0547 T-protein 547 6-85 f a.7 164 164.1 164.1.1 alpha bundles Chorismate mutase II Chorismate mutase II Chorismate mutase II 000143244 e3rmiA1 002993703 Q87S77_nD2 Q87S77 Q87S77_VIBPA VP0547 T-protein 547 91-250 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009185 e2pv7A2 002993704 Q87S77_nD3 Q87S77 Q87S77_VIBPA VP0547 T-protein 547 251-375 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000003523 e2pv7A1 002993705 Q87NU6_nD2 Q87NU6 Q87NU6_VIBPA VP1772 1772 256-460 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001900931 e3ek1A1 002993706 Q87NU6_nD1 Q87NU6 Q87NU6_VIBPA VP1772 1772 6-255,446-475 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001903260 e3r64A1 002993707 Q87II6_nD2 Q87II6 Q87II6_VIBPA VPA0620 3699 271-408 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000299956 e2c7zA2 002993708 Q87II6_nD1 Q87II6 Q87II6_VIBPA VPA0620 3699 6-270 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 001481065 e4o9cF1 002993709 Q87K60_nD1 Q87K60 NAGB_VIBPA VPA0038 nagB Glucosamine-6-phosphate deaminase 3117 1-260 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 000099921 e1frzA1 002993710 Q87LA5_nD2 Q87LA5 Q87LA5_VIBPA VP2707 2706 161-305 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001824476 e5eouA2 002993711 Q87LA5_nD1 Q87LA5 Q87LA5_VIBPA VP2707 2706 1-160 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001385054 e2ychA2 002993712 Q87LA5_nD4 Q87LA5 Q87LA5_VIBPA VP2707 2706 366-475 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002993713 Q87LA5_nD3 Q87LA5 Q87LA5_VIBPA VP2707 2706 306-340 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 002769362 e6zz8A3 002993714 Q87FT2_nD1 Q87FT2 Q87FT2_VIBPA VPA1596 4675 6-160 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000149729 e4e0aA1 002993715 Q87RD3_nD1 Q87RD3 Q87RD3_VIBPA VP0864 purU Formyltetrahydrofolate deformylase 864 1-80 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000384977 e3louC1 002993716 Q87RD3_nD2 Q87RD3 Q87RD3_VIBPA VP0864 purU Formyltetrahydrofolate deformylase 864 81-275 f a.17 7571 7571.1 7571.1.1 a/b three-layered sandwiches Formyltransferase Formyltransferase Formyltransferase 002600210 e3aufA1 002993717 Q87ML4_nD1 Q87ML4 Q87ML4_VIBPA VP2217 2217 31-180 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000161629 e2b1kA1 002993718 Q87IZ0_nD1 Q87IZ0 Q87IZ0_VIBPA VPA0466 Universal stress protein 3545 1-140 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009855 e1jmvA1 002993719 Q87K37_nD2 Q87K37 Q87K37_VIBPA VPA0061 Multidrug resistance protein NorM 3140 226-445 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002755963 e7dqkB2 002993720 Q87K37_nD1 Q87K37 Q87K37_VIBPA VPA0061 Multidrug resistance protein NorM 3140 11-225 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002072264 e3vvsA2 002993721 Q87QJ2_nD1 Q87QJ2 Q87QJ2_VIBPA VP1157 1157 6-280 f a.10 5048 5048.1 5048.1.1 alpha complex topology Aquaporin-like Aquaporin-like Aquaporin-like 000379604 e3klyC1 002993722 Q87R31_nD1 Q87R31 Q87R31_VIBPA VP0967 Penicillin-binding protein activator LpoB 967 36-190 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 001835355 e4hrvB1 002993723 Q87HU8_nD1 Q87HU8 Q87HU8_VIBPA VPA0858 3937 1-110 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 002485694 e6ghcB2 002993724 Q87HU8_nD2 Q87HU8 Q87HU8_VIBPA VPA0858 3937 116-185 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000025852 e2aklA1 002993725 Q87HG2_nD1 Q87HG2 Q87HG2_VIBPA VPA1003 4082 21-195 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002642997 e6t1zA1 002993726 Q87HG2_nD2 Q87HG2 Q87HG2_VIBPA VPA1003 4082 196-235 f a.7 159 159.1 159.1.2 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases MazG-related 001719256 e5cwcA1 002993727 Q87NM7_nD1 Q87NM7 Q87NM7_VIBPA VP1841 Competence protein 1841 21-210 f a.7 601 601.15 601.15.1 alpha bundles Four-helical up-and-down bundle Proteasome activator reg(alpha) Proteasome activator reg(alpha) 002326776 e5mx5I1 002993728 Q87II5_nD2 Q87II5 Q87II5_VIBPA VPA0621 3700 251-470 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001904476 e4zz7A2 002993729 Q87II5_nD1 Q87II5 Q87II5_VIBPA VPA0621 3700 1-250,471-490 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001903493 e1t90D2 002993730 Q87KW6_nD5 Q87KW6 Q87KW6_VIBPA VP2859 histidine kinase 2858 316-465 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001289570 e4bixB1 002993731 Q87KW6_nD2 Q87KW6 Q87KW6_VIBPA VP2859 histidine kinase 2858 41-180 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000185588 e3v67A1 002993732 Q87KW6_nD1 Q87KW6 Q87KW6_VIBPA VP2859 histidine kinase 2858 11-40 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001389315 e4mt8A1 002993733 Q87KW6_nD4 Q87KW6 Q87KW6_VIBPA VP2859 histidine kinase 2858 246-310 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001289566 e4biwB1 002993734 Q87KW6_nD3 Q87KW6 Q87KW6_VIBPA VP2859 histidine kinase 2858 181-245 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002993735 Q87KN2_nD2 Q87KN2 LEXA_VIBPA VP2945 lexA LexA repressor 2944 71-205 f a.1 4 4.11 4.11.1 beta barrels SH3 LexA/Signal peptidase LexA/Signal peptidase 000000669 e1jhfA1 002993736 Q87KN2_nD1 Q87KN2 LEXA_VIBPA VP2945 lexA LexA repressor 2944 6-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002560 e1jhfA2 002993737 Q79YW3_nD1 Q79YW3 Q79YW3_VIBPA VP2245 Flagellar FliJ protein 2245 6-120 f a.7 3755 3755.1 3755.1.1 alpha bundles YscO-like Putative type III secretion protein YscO-related Putative type III secretion protein YscO-related 001097271 e4mh6A1 002993738 Q87MR6_nD1 Q87MR6 Q87MR6_VIBPA VP2165 RHH_4 domain-containing protein 2165 1-95 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 000377492 e3kk4C1 002993739 Q87JM5_nD3 Q87JM5 Q87JM5_VIBPA VPA0223 3302 41-55,216-310 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002993740 Q87JM5_nD4 Q87JM5 Q87JM5_VIBPA VPA0223 3302 31-40,311-380 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002077192 e5nikD2 002993741 Q87JM5_nD2 Q87JM5 Q87JM5_VIBPA VPA0223 3302 56-90,181-215 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001647794 e3fppB1 002993742 Q87JM5_nD1 Q87JM5 Q87JM5_VIBPA VPA0223 3302 91-180 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001632108 e4dk0A2 002993743 Q87TM8_nD1 Q87TM8 Q87TM8_VIBPA VP0041 rep ATP-dependent DNA helicase Rep 41 6-670 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001397092 e4ceiA4 002993744 Q87KE5_nD1 Q87KE5 Q87KE5_VIBPA VP3032 DUF1488 domain-containing protein 3031 6-85 f a.11 4152 4152.1 4152.1.1 a+b two layers Shew3726-like Shew3726-like Shew3726-like 000006291 e2gpiA1 002993745 Q87QD1_nD1 Q87QD1 Q87QD1_VIBPA VP1218 1218 46-660 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001717339 e3cslA1 002993746 Q87SK0_nD2 Q87SK0 GLNE_VIBPA VP0423 glnE Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme 423 1-285,451-815 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001179387 e3k7dA3 002993747 Q87SK0_nD1 Q87SK0 GLNE_VIBPA VP0423 glnE Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme 423 291-440 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002993748 Q87SK0_nD3 Q87SK0 GLNE_VIBPA VP0423 glnE Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme 423 816-945 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002993749 Q87IE7_nD1 Q87IE7 Q87IE7_VIBPA VPA0659 3738 1-315 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000154491 e4g1uA1 002993750 Q87KJ3_nD2 Q87KJ3 Q87KJ3_VIBPA VP2984 lysA Diaminopimelate decarboxylase 2983 1-30,286-415 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000139490 e3n2bA1 002993751 Q87KJ3_nD1 Q87KJ3 Q87KJ3_VIBPA VP2984 lysA Diaminopimelate decarboxylase 2983 31-285 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001787667 e4xg1B1 002993752 Q87NJ1_nD1 Q87NJ1 Q87NJ1_VIBPA VP1877 1877 1-179 f a.14 873 873.1 873.1.1 a+b complex topology H-NOX domain H-NOX domain H-NOX domain 002330628 e6bddA1 002993753 Q87K77_nD3 Q87K77 Y4021_VIBPA VPA0021 Uncharacterized response regulatory protein VPA0021 3100 216-260 f a.1 4 4.8 4.8.1 beta barrels SH3 Chromo domain-like Chromo domain-like 000185085 e3bs1A2 002993754 Q87K77_nD1 Q87K77 Y4021_VIBPA VPA0021 Uncharacterized response regulatory protein VPA0021 3100 1-150 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002670620 e6swlA1 002993755 Q87K77_nD2 Q87K77 Y4021_VIBPA VPA0021 Uncharacterized response regulatory protein VPA0021 3100 156-215 f a.1 4 4.8 4.8.1 beta barrels SH3 Chromo domain-like Chromo domain-like 001487665 e3d6wB1 002993756 Q87IF0_nD2 Q87IF0 Q87IF0_VIBPA VPA0656 3735 146-225 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001180068 e3b02A3 002993757 Q87IF0_nD1 Q87IF0 Q87IF0_VIBPA VPA0656 3735 11-145 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000164712 e2ptmA1 002993758 Q87GN2_nD2 Q87GN2 Q87GN2_VIBPA VPA1283 4362 196-404 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000004912 e1pw4A2 002993759 Q87GN2_nD1 Q87GN2 Q87GN2_VIBPA VPA1283 4362 6-190 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001234866 e4gbzA4 002993760 Q87JS6_nD1 Q87JS6 Q87JS6_VIBPA VPA0172 Zn_protease domain-containing protein 3251 6-140 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000017 e2pmaA1 002993761 Q87QL2_nD3 Q87QL2 HIS1_VIBPA VP1137 hisG ATP phosphoribosyltransferase 1137 221-298 f a.11 304 304.5 304.5.1 a+b two layers Alpha-beta plaits GlnB-like GlnB-like 000005207 e1nh8A1 002993762 Q87QL2_nD1 Q87QL2 HIS1_VIBPA VP1137 hisG ATP phosphoribosyltransferase 1137 1-100,191-220 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002819894 e7damA1 002993763 Q87QL2_nD2 Q87QL2 HIS1_VIBPA VP1137 hisG ATP phosphoribosyltransferase 1137 101-190 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518724 e1h3dA3 002993764 Q87M06_nD1 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 6-145 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000363506 e3h1cC4 002993765 Q87M06_nD6 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 551-620 f a.11 327 327.11 327.11.2 a+b two layers Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I) 001208161 e4aimA19 002993766 Q87M06_nD5 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 461-550 f a.11 245 245.1 245.1.1 a+b two layers Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2 002129715 e5xexB2 002993767 Q87M06_nD2 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 146-235 f a.11 245 245.1 245.1.1 a+b two layers Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2 001208121 e3cdiA7 002993768 Q87M06_nD4 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 326-460 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001837105 e4am3B3 002993769 Q87M06_nD7 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 621-705 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002468576 e6qh2A1 002993770 Q87M06_nD3 Q87M06 PNP_VIBPA VP2452 pnp Polyribonucleotide nucleotidyltransferase 2452 236-325 f a.6 101 101.11 101.11.1 alpha arrays HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 002766590 e7ogkA6 002993771 Q87IT0_nD1 Q87IT0 Q87IT0_VIBPA VPA0526 3605 21-323 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002327394 e6ehbC1 002993772 Q87HB1_nD1 Q87HB1 Q87HB1_VIBPA VPA1054 4133 6-110 f a.3 66 66.1 66.1.1 beta sandwiches ISP domain ISP domain ISP domain 002827334 e7szeB2 002993773 Q87T76_nD2 Q87T76 Q87T76_VIBPA VP0194 194 156-345 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001716637 e1pswA3 002993774 Q87T76_nD1 Q87T76 Q87T76_VIBPA VP0194 194 1-155 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717651 e2gt1B1 002993775 Q87J88_nD2 Q87J88 Q87J88_VIBPA VPA0365 3444 91-160,261-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002993776 Q87J88_nD1 Q87J88 Q87J88_VIBPA VPA0365 3444 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002993777 Q87J88_nD3 Q87J88 Q87J88_VIBPA VPA0365 3444 161-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002993778 Q87IN2_nD1 Q87IN2 Q87IN2_VIBPA VPA0574 3653 1-195 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002440810 e5yf0B1 002993779 Q87SR2_nD1 Q87SR2 Q87SR2_VIBPA VP0360 DUF3316 domain-containing protein 360 36-145 f a.11 304 304.133 304.133.1 a+b two layers Alpha-beta plaits 26 kDa periplasmic immunogenic protein 26 kDa periplasmic immunogenic protein 000987340 e4hvzD2 002993780 Q87KF4_nD1 Q87KF4 THIG_VIBPA VP3023 thiG Thiazole synthase 3022 1-255 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002171717 e5z9yB1 002993781 Q87H56_nD2 Q87H56 Q87H56_VIBPA VPA1109 4188 271-390 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 002478110 e6qvcA2 002993782 Q87H56_nD1 Q87H56 Q87H56_VIBPA VPA1109 4188 1-270 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002993783 Q87P80_nD1 Q87P80 QUEC_VIBPA VP1638 queC 7-cyano-7-deazaguanine synthase 1638 1-225 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009844 e2pg3A1 002993784 Q87FD8_nD2 Q87FD8 Q87FD8_VIBPA VPA1741 SIS domain-containing protein 4820 81-283 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001114600 e3fj1D1 002993785 Q87FD8_nD1 Q87FD8 Q87FD8_VIBPA VPA1741 SIS domain-containing protein 4820 1-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001066900 e4ivnA2 002993786 Q87J39_nD1 Q87J39 Q87J39_VIBPA VPA0414 FGE-sulfatase domain-containing protein 3493 71-160 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 001291143 e4q51B1 002993787 Q87NM3_nD2 Q87NM3 Q87NM3_VIBPA VP1845 Exocyst subunit Exo70 family protein 1845 136-160 f a.10 1063 1063.1 1063.1.1 alpha complex topology Tegument protein U14 Tegument protein U14 Tegument protein U14 001855144 e5b1qB1 002993788 Q87NM3_nD1 Q87NM3 Q87NM3_VIBPA VP1845 Exocyst subunit Exo70 family protein 1845 6-135,161-220 f a.7 601 601.1 601.1.2 alpha bundles Four-helical up-and-down bundle alpha-catenin-related I/LWEQ domain (Pfam 01608) 001144793 e3ay5A2 002993789 Q87K11_nD1 Q87K11 Q87K11_VIBPA VPA0087 3166 1-445,466-535,561-570 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002808506 e7vsiA1 002993790 Q87K11_nD2 Q87K11 Q87K11_VIBPA VPA0087 3166 536-560 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002749857 e7nhk01 002993791 Q87SV4_nD1 Q87SV4 THIQ_VIBPA VP0318 thiQ Thiamine import ATP-binding protein ThiQ 318 1-234 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000426307 e3rlfB1 002993792 Q87QB9_nD1 Q87QB9 FABV1_VIBPA VP1231 fabV1 Enoyl-[acyl-carrier-protein] reductase [NADH] 1 1231 1-400 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001291198 e4bkrA1 002993793 Q87HL7_nD1 Q87HL7 Q87HL7_VIBPA VPA0946 Sulf_transp domain-containing protein 4025 6-135 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002816920 e7f57A3 002993794 Q87H66_nD1 Q87H66 Q87H66_VIBPA VPA1099 Peroxiredoxin 4178 1-155 f a.11 324 324.1 324.1.1 a+b two layers OsmC-like OsmC-like OsmC-like 000005876 e2d7vA1 002993795 Q87L50_nD1 Q87L50 Q87L50_VIBPA VP2765 2764 6-250 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002708699 e6ld7C2 002993796 Q87L50_nD2 Q87L50 Q87L50_VIBPA VP2765 2764 251-385 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 000067966 e1cs1B1 002993797 Q87NE3_nD2 Q87NE3 Q87NE3_VIBPA VP1925 1925 166-500,596-620 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002810966 e7oseA2 002993798 Q87NE3_nD1 Q87NE3 Q87NE3_VIBPA VP1925 1925 1-165 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 001838822 e5doqA2 002993799 Q87NE3_nD3 Q87NE3 Q87NE3_VIBPA VP1925 1925 501-595 f a.5 5090 5090.1 5090.1.1 beta complex topology Viral glycoprotein, central and dimerisation domains-like Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains 000185560 e3u2gA2 002993800 Q87G04_nD2 Q87G04 Q87G04_VIBPA VPA1516 4595 156-253 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000161723 e2d1vA1 002993801 Q87G04_nD1 Q87G04 Q87G04_VIBPA VPA1516 4595 16-155 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002993802 Q87MV4_nD2 Q87MV4 Q87MV4_VIBPA VP2127 Phosphorelay protein LuxU 2127 121-200 f a.6 5000 5000.3 5000.3.1 alpha arrays Toxins' membrane translocation domains Bcl-2 inhibitors of programmed cell death Bcl-2 inhibitors of programmed cell death 002703933 e7jmtA1 002993803 Q87MV4_nD1 Q87MV4 Q87MV4_VIBPA VP2127 Phosphorelay protein LuxU 2127 1-120,201-260 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 000162589 e2d4uA1 002993804 Q87MV4_nD3 Q87MV4 Q87MV4_VIBPA VP2127 Phosphorelay protein LuxU 2127 311-429 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002993805 Q87TC6_nD1 Q87TC6 Q87TC6_VIBPA VP0144 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ 144 6-155 f a.11 4018 4018.1 4018.1.1 a+b two layers a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases 001712531 e5djiA1 002993806 Q87TC6_nD2 Q87TC6 Q87TC6_VIBPA VP0144 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ 144 156-275 f a.17 7587 7587.1 7587.1.1 a/b three-layered sandwiches Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases 000010942 e1ka1A2 002993807 Q87KH6_nD1 Q87KH6 Q87KH6_VIBPA VP3001 Thioredoxin 3000 6-108 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002448709 e6nupA1 002993808 Q87T00_nD1 Q87T00 RS14_VIBPA VP0270 rpsN 30S ribosomal protein S14 270 1-100 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 002826885 e7rygn1 002993809 Q87R00_nD1 Q87R00 Q87R00_VIBPA VP0998 998 1-255 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009677 e1b0uA1 002993810 Q87RC1_nD1 Q87RC1 Q87RC1_VIBPA VP0876 876 21-323 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001866861 e5anzA1 002993811 Q87N29_nD1 Q87N29 Q87N29_VIBPA VP2046 PTS system glucose-specific EIICB component 2046 6-385 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002993812 Q87N29_nD2 Q87N29 Q87N29_VIBPA VP2046 PTS system glucose-specific EIICB component 2046 401-475 f a.11 306 306.1 306.1.1 a+b two layers Glucose permease domain IIB-like Glucose permease domain IIB Glucose permease domain IIB 000351323 e3bp3B1 002993813 Q87MU9_nD1 Q87MU9 Q87MU9_VIBPA VP2132 ATP-binding protein 2132 31-115 f a.8 559 559.1 559.1.1 alpha duplicates or obligate multimers H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain 001031076 e3nr7A1 002993814 Q87LZ7_nD1 Q87LZ7 GLMM_VIBPA VP2461 glmM Phosphoglucosamine mutase 2461 6-155 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002442032 e6gyzA1 002993815 Q87LZ7_nD2 Q87LZ7 GLMM_VIBPA VP2461 glmM Phosphoglucosamine mutase 2461 156-255 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 000174750 e3i3wA4 002993816 Q87LZ7_nD3 Q87LZ7 GLMM_VIBPA VP2461 glmM Phosphoglucosamine mutase 2461 256-370 f a.17 7528 7528.1 7528.1.1 a/b three-layered sandwiches Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 002800852 e7ojrA3 002993817 Q87LZ7_nD4 Q87LZ7 GLMM_VIBPA VP2461 glmM Phosphoglucosamine mutase 2461 371-445 f a.11 331 331.2 331.2.1 a+b two layers TBP-like Phosphoglucomutase, C-terminal domain Phosphoglucomutase, C-terminal domain 001390714 e4bjuA3 002993818 Q87R68_nD1 Q87R68 Q87R68_VIBPA VP0930 menH Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 930 6-264 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001290789 e4mysB1 002993819 Q87IK5_nD1 Q87IK5 Q87IK5_VIBPA VPA0601 3680 11-400 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001014986 e4k38A1 002993820 Q87QC6_nD2 Q87QC6 Q87QC6_VIBPA VP1223 NAD(P)-bd_dom domain-containing protein 1223 326-485 f a.11 331 331.3 331.3.1 a+b two layers TBP-like Bet v1-like Bet v1-like 002156956 e5woxA1 002993821 Q87QC6_nD1 Q87QC6 Q87QC6_VIBPA VP1223 NAD(P)-bd_dom domain-containing protein 1223 1-325 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009037 e1gy8A1 002993822 Q87I80_nD1 Q87I80 Q87I80_VIBPA VPA0726 3805 1-30 f a.21 5106 5106.1 5106.1.1 extended segments PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex PetG subunit of the cytochrome b6f complex 002551103 e6rqfG1 002993823 Q87I80_nD5 Q87I80 Q87I80_VIBPA VPA0726 3805 261-288 f a.8 4207 4207.1 4207.1.1 alpha duplicates or obligate multimers Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21) 002325312 e5oqmn1 002993824 Q87I80_nD2 Q87I80 Q87I80_VIBPA VPA0726 3805 51-80 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 001252433 e2vj4A7 002993825 Q87I80_nD4 Q87I80 Q87I80_VIBPA VPA0726 3805 131-260 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001817768 e3jc9Cb1 002993826 Q87I80_nD3 Q87I80 Q87I80_VIBPA VPA0726 3805 81-130 f a.7 603 603.1 603.1.1 alpha bundles STAT-like t-snare proteins t-snare proteins 002644470 e6xm1D1 002993827 Q79YZ5_nD4 Q79YZ5 Q79YZ5_VIBPA VP0122 bipA 50S ribosomal subunit assembly factor BipA 122 396-485 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 001569030 e4zciB1 002993828 Q79YZ5_nD3 Q79YZ5 Q79YZ5_VIBPA VP0122 bipA 50S ribosomal subunit assembly factor BipA 122 306-395 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 000185193 e3e3xA1 002993829 Q79YZ5_nD1 Q79YZ5 Q79YZ5_VIBPA VP0122 bipA 50S ribosomal subunit assembly factor BipA 122 6-200 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002331891 e6d9j91 002993830 Q79YZ5_nD5 Q79YZ5 Q79YZ5_VIBPA VP0122 bipA 50S ribosomal subunit assembly factor BipA 122 486-605 f a.14 6045 6045.1 6045.1.1 a+b complex topology C-terminal domain of BipA C-terminal domain of BipA C-terminal domain of BipA 001569035 e4zckA1 002993831 Q79YZ5_nD2 Q79YZ5 Q79YZ5_VIBPA VP0122 bipA 50S ribosomal subunit assembly factor BipA 122 201-305 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001569033 e4zciB4 002993832 Q87KB4_nD2 Q87KB4 Q87KB4_VIBPA VP3063 3062 91-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002723526 e6yizA1 002993833 Q87KB4_nD1 Q87KB4 Q87KB4_VIBPA VP3063 3062 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000045690 e1iz1B1 002993834 P66346_nD1 P66346 RS10_VIBPA VP0256 rpsJ 30S ribosomal protein S10 256 6-103 f a.11 304 304.44 304.44.1 a+b two layers Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10 002814910 e7ryfj1 002993835 Q87N46_nD1 Q87N46 IHFB_VIBPA VP2029 ihfB Integration host factor subunit beta 2029 1-55,76-90 f a.6 101 101.17 101.17.1 alpha arrays HTH IHF-like DNA-binding proteins IHF-like DNA-binding proteins 001843303 e5l8zA1 002993836 Q87GA0_nD1 Q87GA0 Q87GA0_VIBPA VPA1417 4496 1-200 f a.9 109 109.1 109.1.1 alpha superhelices Repetitive alpha hairpins Glutathione S-transferase (GST)-C Glutathione S-transferase (GST)-C 002390780 e5y6lC1 002993837 Q87RK5_nD1 Q87RK5 Q87RK5_VIBPA VP0785 Flagellar hook-associated protein 1 785 1-70,606-645 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002734730 e7nvgV21 002993838 Q87RK5_nD2 Q87RK5 Q87RK5_VIBPA VP0785 Flagellar hook-associated protein 1 785 71-335,416-435,541-605 f a.7 601 601.52 601.52.1 alpha bundles Four-helical up-and-down bundle Flagellar hook-associated protein 1 helical domain Flagellar hook-associated protein 1 helical domain 001501287 e4ut1A1 002993839 Q87RK5_nD3 Q87RK5 Q87RK5_VIBPA VP0785 Flagellar hook-associated protein 1 785 336-415 f a.3 3943 3943.1 3943.1.1 beta sandwiches Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains 001501273 e2d4yA2 002993840 Q87RK5_nD4 Q87RK5 Q87RK5_VIBPA VP0785 Flagellar hook-associated protein 1 785 436-540 f a.3 3943 3943.1 3943.1.1 beta sandwiches Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains 001501288 e4ut1A2 002993841 Q87L66_nD3 Q87L66 Q87L66_VIBPA VP2746 2745 251-320 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002672678 e6w6mK2 002993842 Q87L66_nD4 Q87L66 Q87L66_VIBPA VP2746 2745 321-575 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 002672677 e6w6mK1 002993843 Q87L66_nD1 Q87L66 Q87L66_VIBPA VP2746 2745 36-140 f a.3 319 319.3 319.3.1 beta sandwiches HSP20-like B2 domain of PilQ B2 domain of PilQ 000185651 e4aqzA1 002993844 Q87L66_nD2 Q87L66 Q87L66_VIBPA VP2746 2745 156-230 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 002672679 e6w6mK3 002993845 Q87MI9_nD1 Q87MI9 Q87MI9_VIBPA VP2266 Helix-turn-helix domain-containing protein 2266 6-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000136975 e3ke2A1 002993846 Q87LZ3_nD1 Q87LZ3 Q87LZ3_VIBPA VP2465 2465 1-98 f a.11 328 328.4 328.4.1 a+b two layers IF3-like YhbY-like YhbY-like 000005631 e1jo0A1 002993847 Q87IF6_nD1 Q87IF6 Q87IF6_VIBPA VPA0650 3729 1-205 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000988506 e4a2aB1 002993848 Q87IF6_nD2 Q87IF6 Q87IF6_VIBPA VPA0650 3729 206-445 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000411876 e3qbxB1 002993849 Q87LX3_nD2 Q87LX3 Q87LX3_VIBPA VP2485 2485 116-270 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011187 e1zc6A2 002993850 Q87LX3_nD1 Q87LX3 Q87LX3_VIBPA VP2485 2485 1-110 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000011186 e1zc6A1 002993851 Q87P84_nD1 Q87P84 Q87P84_VIBPA VP1634 1634 21-435 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 001841138 e5azsC1 002993852 Q87KM1_nD1 Q87KM1 Q87KM1_VIBPA VP2956 ftsY Signal recognition particle receptor FtsY 2955 101-190 f a.7 181 181.1 181.1.1 alpha bundles Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins 001280706 e2yhsA4 002993853 Q87KM1_nD2 Q87KM1 Q87KM1_VIBPA VP2956 ftsY Signal recognition particle receptor FtsY 2955 191-400 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000102090 e1vmaA2 002993854 Q87J20_nD1 Q87J20 Q87J20_VIBPA VPA0432 3512 1-93 f a.11 284 284.1 284.1.1 a+b two layers FKBP-like FKBP-like FKBP-like 000185505 e3rfwA1 002993855 Q87NR7_nD1 Q87NR7 Q87NR7_VIBPA VP1801 DUF4956 domain-containing protein 1801 46-70 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 002330402 e6bvgA1 002993856 Q87NR7_nD2 Q87NR7 Q87NR7_VIBPA VP1801 DUF4956 domain-containing protein 1801 71-155 f a.6 101 101.35 101.35.1 alpha arrays HTH DNA repair regulatory protein RecX DNA repair regulatory protein RecX 001068632 e3dfgA1 002993857 Q87LN6_nD2 Q87LN6 Q87LN6_VIBPA VP2575 2574 81-135 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002566250 e6pwpF1 002993858 Q87LN6_nD1 Q87LN6 Q87LN6_VIBPA VP2575 2574 1-75 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002512479 e6rm3SE03 002993859 Q87FX4_nD5 Q87FX4 Q87FX4_VIBPA VPA1546 flhA Flagellar biosynthesis protein FlhA 4625 501-585 f a.6 3254 3254.1 3254.1.1 alpha arrays helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA helical domain in flagellar biosynthesis protein flhA 002672846 e6wa6H2 002993860 Q87FX4_nD2 Q87FX4 Q87FX4_VIBPA VPA1546 flhA Flagellar biosynthesis protein FlhA 4625 281-325 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002811201 e7dkhI1 002993861 Q87FX4_nD6 Q87FX4 Q87FX4_VIBPA VPA1546 flhA Flagellar biosynthesis protein FlhA 4625 591-695 f a.17 3255 3255.1 3255.1.1 a/b three-layered sandwiches a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA a/b domain in flagellar biosynthesis protein flhA 002784297 e7oslB2 002993862 Q87FX4_nD1 Q87FX4 Q87FX4_VIBPA VPA1546 flhA Flagellar biosynthesis protein FlhA 4625 21-265 f 002993863 Q87FX4_nD4 Q87FX4 Q87FX4_VIBPA VPA1546 flhA Flagellar biosynthesis protein FlhA 4625 431-480 f a.11 3253 3253.1 3253.1.1 a+b two layers ferredoxin-like domain in flagellar biosynthesis protein flhA ferredoxin-like domain in flagellar biosynthesis protein flhA ferredoxin-like domain in flagellar biosynthesis protein flhA 002325633 e6ch1A2 002993864 Q87FX4_nD3 Q87FX4 Q87FX4_VIBPA VPA1546 flhA Flagellar biosynthesis protein FlhA 4625 346-430,481-500 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002755331 e7amyA2 002993865 Q87M51_nD1 Q87M51 Q87M51_VIBPA VP2407 2407 1-375 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002771391 e7lhvA1 002993866 Q87PY5_nD2 Q87PY5 Q87PY5_VIBPA VP1365 1365 251-315,336-410 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 001577174 e3pfeA1 002993867 Q87PY5_nD1 Q87PY5 Q87PY5_VIBPA VP1365 1365 41-250,411-509 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001875268 e2zofA2 002993868 Q87PU6_nD5 Q87PU6 Q87PU6_VIBPA VP1405 Type VI secretion system protein ImpG 1405 231-240,451-575 f a.11 327 327.7 327.7.1 a+b two layers Alpha-lytic protease prodomain-like Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 000221616 e4hlbA1 002993869 Q87PU6_nD2 Q87PU6 Q87PU6_VIBPA VP1405 Type VI secretion system protein ImpG 1405 131-215,241-290 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 002528650 e4hssB3 002993870 Q87PU6_nD1 Q87PU6 Q87PU6_VIBPA VP1405 Type VI secretion system protein ImpG 1405 6-60 f a.7 5063 5063.1 5063.1.1 alpha bundles Photosystem I reaction center subunit X, PsaK Photosystem I reaction center subunit X, PsaK Photosystem I reaction center subunit X, PsaK 002785961 e6vpvk1 002993871 Q87PU6_nD4 Q87PU6 Q87PU6_VIBPA VP1405 Type VI secretion system protein ImpG 1405 296-410 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 001236190 e2xtlB15 002993872 Q87PU6_nD3 Q87PU6 Q87PU6_VIBPA VP1405 Type VI secretion system protein ImpG 1405 81-130,411-440 f a.1 1 1.16 1.16.1 beta barrels cradle loop barrel Baseplate wedge protein gp6 domain I Baseplate wedge protein gp6 domain I 001789804 e5hx2E4 002993873 Q87R58_nD1 Q87R58 Q87R58_VIBPA VP0940 HlyD_D23 domain-containing protein 940 96-150 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001070258 e4l8jA1 002993874 Q87R58_nD2 Q87R58 Q87R58_VIBPA VP0940 HlyD_D23 domain-containing protein 940 56-95,151-190 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001070259 e4l8jA2 002993875 Q87R58_nD3 Q87R58 Q87R58_VIBPA VP0940 HlyD_D23 domain-containing protein 940 46-55,191-265 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001647795 e3fppB2 002993876 Q87R58_nD4 Q87R58 Q87R58_VIBPA VP0940 HlyD_D23 domain-containing protein 940 31-45,271-340 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002993877 Q87J27_nD1 Q87J27 Q87J27_VIBPA VPA0426 3505 166-245 f a.11 272 272.1 272.1.1 a+b two layers TolA/TonB C-terminal domain TolA/TonB C-terminal domain TolA/TonB C-terminal domain 002534572 e6i97D1 002993878 Q87NV2_nD1 Q87NV2 Q87NV2_VIBPA VP1766 1766 1-85 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000149 e2e1bA1 002993879 Q87NV2_nD2 Q87NV2 Q87NV2_VIBPA VP1766 1766 86-213 f a.11 309 309.1 309.1.2 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain 002588826 e6vu9A3 002993880 Q87K87_nD2 Q87K87 Y4011_VIBPA VPA0011 Probable transcriptional regulatory protein VPA0011 3090 81-130,206-238 f a.11 4007 4007.1 4007.1.1 a+b two layers a+b domain in YebC-like proteins a+b domain in YebC-like proteins a+b domain in YebC-like proteins 001844216 e5ekzA1 002993881 Q87K87_nD1 Q87K87 Y4011_VIBPA VPA0011 Probable transcriptional regulatory protein VPA0011 3090 1-75 f a.6 4003 4003.1 4003.1.1 alpha arrays Helical bundle domain in YebC-like proteins Helical bundle domain in YebC-like proteins Helical bundle domain in YebC-like proteins 000002937 e1lfpA1 002993882 Q87K87_nD3 Q87K87 Y4011_VIBPA VPA0011 Probable transcriptional regulatory protein VPA0011 3090 131-200 f a.11 304 304.117 304.117.1 a+b two layers Alpha-beta plaits Ferredoxin-like domain in YebC Ferredoxin-like domain in YebC 000005445 e1mw7A2 002993883 Q87TJ6_nD1 Q87TJ6 RSMJ_VIBPA VP0073 rsmJ Ribosomal RNA small subunit methyltransferase J 73 1-255 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000009414 e2oyrA1 002993884 Q87H48_nD1 Q87H48 Q87H48_VIBPA VPA1117 4196 1-245 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001124865 e4n5mB1 002993885 Q87T88_nD2 Q87T88 Q87T88_VIBPA VP0182 QRPTase_C domain-containing protein 182 36-60 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001315091 e4q37C1 002993886 Q87T88_nD1 Q87T88 Q87T88_VIBPA VP0182 QRPTase_C domain-containing protein 182 1-30 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002755463 e7ljoA2 002993887 Q87LM5_nD1 Q87LM5 Q87LM5_VIBPA VP2586 2585 1-395 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 002409968 e6ainB2 002993888 Q87M89_nD2 Q87M89 Q87M89_VIBPA VP2369 peptidoglycan lytic exotransglycosylase 2369 21-120,256-355 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001153120 e2picA3 002993889 Q87M89_nD1 Q87M89 Q87M89_VIBPA VP2369 peptidoglycan lytic exotransglycosylase 2369 121-255 f a.1 239 239.1 239.1.1 beta barrels Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like 000000801 e2ae0X2 002993890 Q87T66_nD1 Q87T66 Q87T66_VIBPA VP0204 204 6-125,296-315 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002482373 e6norA2 002993891 Q87T66_nD2 Q87T66 Q87T66_VIBPA VP0204 204 126-295,316-335 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 002554484 e6o15A2 002993892 Q87MF7_nD1 Q87MF7 Y2298_VIBPA VP2298 UPF0294 protein VP2298 2298 31-280 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 002754119 e7ax1A1 002993893 Q87TE8_nD2 Q87TE8 Q87TE8_VIBPA VP0121 Glutamine synthetase 121 101-469 f a.11 321 321.1 321.1.1 a+b two layers Glutamine synthetase-like Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase 000153299 e4acfA1 002993894 Q87TE8_nD1 Q87TE8 Q87TE8_VIBPA VP0121 Glutamine synthetase 121 1-100 f a.1 239 239.4 239.4.1 beta barrels Ribosomal protein L25-like Glutamine synthetase, N-terminal domain Glutamine synthetase, N-terminal domain 000143551 e3ng0A2 002993895 Q87M16_nD1 Q87M16 Q87M16_VIBPA VP2442 DNA polymerase III subunit psi 2442 36-130 f a.17 7557 7557.1 7557.1.1 a/b three-layered sandwiches DNA polymerase III psi subunit DNA polymerase III psi subunit DNA polymerase III psi subunit 000109867 e1em8D1 002993896 Q87QY7_nD2 Q87QY7 Q87QY7_VIBPA VP1011 Isocitrate dehydrogenase [NADP] 1011 6-160,566-740 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002601001 e1itwD3 002993897 Q87QY7_nD1 Q87QY7 Q87QY7_VIBPA VP1011 Isocitrate dehydrogenase [NADP] 1011 166-560 f a.17 7510 7510.1 7510.1.1 a/b three-layered sandwiches Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like 002600996 e1itwC1 002993898 Q87FH3_nD1 Q87FH3 UXAC_VIBPA VPA1706 uxaC Uronate isomerase 4785 6-470 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000135696 e3iacA1 002993899 Q87KU4_nD2 Q87KU4 Q87KU4_VIBPA VP2881 Biotin carboxylase 2880 111-330 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000358642 e3g8dB1 002993900 Q87KU4_nD1 Q87KU4 Q87KU4_VIBPA VP2881 Biotin carboxylase 2880 1-110 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 001153568 e3va7A17 002993901 Q87KU4_nD3 Q87KU4 Q87KU4_VIBPA VP2881 Biotin carboxylase 2880 331-445 f a.14 325 325.1 325.1.1 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like 001488990 e4mv4A3 002993902 Q87SX2_nD3 Q87SX2 Q87SX2_VIBPA VP0300 Peptide ABC transporter permease 300 1-45,286-419 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002993903 Q87SX2_nD2 Q87SX2 Q87SX2_VIBPA VP0300 Peptide ABC transporter permease 300 46-105,236-285 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 001954223 e5udfA1 002993904 Q87SX2_nD1 Q87SX2 Q87SX2_VIBPA VP0300 Peptide ABC transporter permease 300 106-210 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 001954224 e5udfA2 002993905 Q87HM7_nD1 Q87HM7 Q87HM7_VIBPA VPA0936 4015 1-325 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002034130 e5toqA2 002993906 Q87HM7_nD2 Q87HM7 Q87HM7_VIBPA VPA0936 4015 326-395 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001193785 e4f4eA2 002993907 Q87TC9_nD3 Q87TC9 Q87TC9_VIBPA VP0141 Type II secretion system protein L 141 301-404 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 000387760 e2w7vB1 002993908 Q87TC9_nD2 Q87TC9 Q87TC9_VIBPA VP0141 Type II secretion system protein L 141 251-280 f a.11 304 304.109 304.109.1 a+b two layers Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e 002512532 e6rm3SY01 002993909 Q87TC9_nD1 Q87TC9 Q87TC9_VIBPA VP0141 Type II secretion system protein L 141 6-235 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001412145 e4phtX1 002993910 Q87HD1_nD1 Q87HD1 Q87HD1_VIBPA VPA1034 EvpB family type VI secretion protein 4113 36-375 f a.17 2499 2499.2 2499.2.1 a/b three-layered sandwiches Subtilisin-like Domain III of tail sheath protein Gp18 Domain III of tail sheath protein Gp18 002152035 e5n8nH1 002993911 Q87HD1_nD2 Q87HD1 Q87HD1_VIBPA VPA1034 EvpB family type VI secretion protein 4113 376-495 f a.15 283 283.2 283.2.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like gpW/gp25-like gpW/gp25-like 001526185 e3j9gb1 002993912 Q87M94_nD1 Q87M94 Q87M94_VIBPA VP2364 2364 1-195 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 001936529 e5sy4A1 002993913 Q87MX1_nD1 Q87MX1 RNFD_VIBPA VP2105 rnfD Ion-translocating oxidoreductase complex subunit D 2105 6-348 f a.10 5049 5049.1 5049.1.3 alpha complex topology Ammonium transporter-related Ammonium transporter-related Na(+)-translocating NADH-quinone reductase subunit B 001447931 e4p6vB1 002993914 Q87R03_nD2 Q87R03 Q87R03_VIBPA VP0995 DUF3360 family protein 995 461-505 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002705927 e7kgvB1 002993915 Q87R03_nD1 Q87R03 Q87R03_VIBPA VP0995 DUF3360 family protein 995 32-460 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002819248 e7rtmA1 002993916 Q87M90_nD1 Q87M90 Q87M90_VIBPA VP2368 2368 6-269 f a.17 2003 2003.1 2003.1.9 a/b three-layered sandwiches Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins 001560680 e4d7aA1 002993917 Q87L99_nD1 Q87L99 Q87L99_VIBPA VP2713 Ligase 2712 21-55,76-320,346-440 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002993918 Q87L99_nD2 Q87L99 Q87L99_VIBPA VP2713 Ligase 2712 41-75,321-340,441-585 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000154429 e4i17A1 002993919 Q87NB2_nD2 Q87NB2 Q87NB2_VIBPA VP1962 1963 146-230 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001567546 e4r8hB1 002993920 Q87NB2_nD1 Q87NB2 Q87NB2_VIBPA VP1962 1963 6-145 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001480979 e4cydA2 002993921 Q87HD3_nD1 Q87HD3 Q87HD3_VIBPA VPA1032 Protein of avirulence locus 4111 1-90 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000004628 e1zbpA2 002993922 Q87HD3_nD2 Q87HD3 Q87HD3_VIBPA VPA1032 Protein of avirulence locus 4111 91-260 f a.1 4 4.21 4.21.1 beta barrels SH3 ImpE-like ImpE-like 000000651 e1zbpA1 002993923 Q87JB6_nD1 Q87JB6 Q87JB6_VIBPA VPA0337 TPR_REGION domain-containing protein 3416 53-105 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001509376 e3gn4A1 002993924 Q87JB6_nD2 Q87JB6 Q87JB6_VIBPA VPA0337 TPR_REGION domain-containing protein 3416 126-298 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002705661 e7kalF1 002993925 Q87FH5_nD1 Q87FH5 Q87FH5_VIBPA VPA1704 TRAP transporter large permease protein 4783 6-425 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002993926 Q87QI3_nD1 Q87QI3 Q87QI3_VIBPA VP1166 DUF2750 domain-containing protein 1166 6-125 f a.14 358 358.3 358.3.1 a+b complex topology SRCR-like Putative uncharacterized protein TTHA0547 Putative uncharacterized protein TTHA0547 001002524 e2z0rI1 002993927 Q87QH4_nD1 Q87QH4 Q87QH4_VIBPA VP1175 1175 101-125 f a.7 604 604.1 604.1.1 alpha bundles Spectrin repeat-like Spectrin repeat Spectrin repeat 002736839 e6z0lD1 002993928 Q87N14_nD1 Q87N14 Q87N14_VIBPA VP2062 rne Ribonuclease E 2062 36-120 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001412633 e4oxpA2 002993929 Q87N14_nD5 Q87N14 Q87N14_VIBPA VP2062 rne Ribonuclease E 2062 401-505 f a.12 3617 3617.1 3617.1.1 a+b three layers Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E 000223710 e2bx2L5 002993930 Q87N14_nD2 Q87N14 Q87N14_VIBPA VP2062 rne Ribonuclease E 2062 121-210 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001412632 e4oxpA1 002993931 Q87N14_nD4 Q87N14 Q87N14_VIBPA VP2062 rne Ribonuclease E 2062 276-400 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 000223708 e2bx2L3 002993932 Q87N14_nD3 Q87N14 Q87N14_VIBPA VP2062 rne Ribonuclease E 2062 1-30,211-275 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001933372 e5f6cA5 002993933 Q87TR2_nD1 Q87TR2 Q87TR2_VIBPA VP0006 6 1-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009677 e1b0uA1 002993934 Q87PT4_nD2 Q87PT4 Q87PT4_VIBPA VP1417 DUF4253 domain-containing protein 1417 116-180 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002559857 e6a4cA1 002993935 Q87PT4_nD1 Q87PT4 Q87PT4_VIBPA VP1417 DUF4253 domain-containing protein 1417 56-83,106-115 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002526305 e6a4cA2 002993936 Q87RN3_nD2 Q87RN3 Q87RN3_VIBPA VP0744 prmC Release factor glutamine methyltransferase 744 81-285 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001141804 e2b3tA3 002993937 Q87RN3_nD1 Q87RN3 Q87RN3_VIBPA VP0744 prmC Release factor glutamine methyltransferase 744 6-80 f a.6 6056 6056.1 6056.1.1 alpha arrays SP1917-like SP1917-like SP1917-like 001141803 e2b3tA2 002993938 Q87L21_nD1 Q87L21 Q87L21_VIBPA VP2796 2795 1-270 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001141836 e1yleA1 002993939 Q87L21_nD2 Q87L21 Q87L21_VIBPA VP2796 2795 271-339 f a.1 1 1.13 1.13.1 beta barrels cradle loop barrel Arginine N-succinyltransferase alpha chain C-terminal domain Arginine N-succinyltransferase alpha chain C-terminal domain 001141837 e1yleA2 002993940 Q87P42_nD3 Q87P42 Q87P42_VIBPA VP1676 1676 166-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002993941 Q87P42_nD1 Q87P42 Q87P42_VIBPA VP1676 1676 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002993942 Q87P42_nD2 Q87P42 Q87P42_VIBPA VP1676 1676 91-165,276-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002601336 e3mz1C1 002993943 Q87MI6_nD2 Q87MI6 DAPE_VIBPA VP2269 dapE Succinyl-diaminopimelate desuccinylase 2269 181-295 f a.11 304 304.25 304.25.1 a+b two layers Alpha-beta plaits Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain 002807646 e7t1qA2 002993944 Q87MI6_nD1 Q87MI6 DAPE_VIBPA VP2269 dapE Succinyl-diaminopimelate desuccinylase 2269 1-180,296-378 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 002709010 e7lgpB2 002993945 Q87MH2_nD1 Q87MH2 Q87MH2_VIBPA VP2283 2283 1-395 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 002088967 e5xlsA1 002993946 Q87MA4_nD2 Q87MA4 RLMG_VIBPA VP2353 rlmG Ribosomal RNA large subunit methyltransferase G 2353 181-375 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000151609 e4dcmA1 002993947 Q87MA4_nD1 Q87MA4 RLMG_VIBPA VP2353 rlmG Ribosomal RNA large subunit methyltransferase G 2353 1-180 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000151610 e4dcmA2 002993948 Q87TI8_nD1 Q87TI8 Q87TI8_VIBPA VP0081 81 21-100 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 002755278 e6v4vA1 002993949 Q87TI8_nD2 Q87TI8 Q87TI8_VIBPA VP0081 81 106-183 f a.11 3261 3261.1 3261.1.1 a+b two layers amino-terminal domain of OmpATb amino-terminal domain of OmpATb amino-terminal domain of OmpATb 002810762 e6xmvA2 002993950 Q87SB9_nD2 Q87SB9 Q87SB9_VIBPA VP0505 srmB ATP-dependent RNA helicase SrmB 505 221-380 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002993951 Q87SB9_nD1 Q87SB9 Q87SB9_VIBPA VP0505 srmB ATP-dependent RNA helicase SrmB 505 6-220 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002993952 Q87LL7_nD1 Q87LL7 Q87LL7_VIBPA VP2594 Oxidative stress defense protein 2593 41-145 f a.11 304 304.133 304.133.1 a+b two layers Alpha-beta plaits 26 kDa periplasmic immunogenic protein 26 kDa periplasmic immunogenic protein 002648135 e7c51A1 002993953 Q87LL7_nD2 Q87LL7 Q87LL7_VIBPA VP2594 Oxidative stress defense protein 2593 26-40,146-230 f a.11 304 304.133 304.133.1 a+b two layers Alpha-beta plaits 26 kDa periplasmic immunogenic protein 26 kDa periplasmic immunogenic protein 002644666 e7c50A2 002993954 Q87I17_nD1 Q87I17 Q87I17_VIBPA VPA0789 Exoribonuclease R 3868 26-120 f a.7 181 181.1 181.1.1 alpha bundles Domain of the SRP/SRP receptor G proteins-like Domain of the SRP/SRP receptor G-proteins Domain of the SRP/SRP receptor G-proteins 002328075 e6cy5B1 002993955 Q87N45_nD6 Q87N45 Q87N45_VIBPA VP2030 30S ribosomal protein S1 2030 441-555 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002392219 e6h4ny2 002993956 Q87N45_nD1 Q87N45 Q87N45_VIBPA VP2030 30S ribosomal protein S1 2030 16-85 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001613754 e3go5A3 002993957 Q87N45_nD2 Q87N45 Q87N45_VIBPA VP2030 30S ribosomal protein S1 2030 91-180 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001346628 e4q7jD1 002993958 Q87N45_nD5 Q87N45 Q87N45_VIBPA VP2030 30S ribosomal protein S1 2030 351-440 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002756370 e7a05A2 002993959 Q87N45_nD3 Q87N45 Q87N45_VIBPA VP2030 30S ribosomal protein S1 2030 181-265 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002756370 e7a05A2 002993960 Q87N45_nD4 Q87N45 Q87N45_VIBPA VP2030 30S ribosomal protein S1 2030 266-350 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002392219 e6h4ny2 002993961 Q87LZ0_nD3 Q87LZ0 Q87LZ0_VIBPA VP2468 2468 56-75,281-350 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 000004896 e2ex2A2 002993962 Q87LZ0_nD4 Q87LZ0 Q87LZ0_VIBPA VP2468 2468 16-55,351-470 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 000379736 e3a3dB3 002993963 Q87LZ0_nD2 Q87LZ0 Q87LZ0_VIBPA VP2468 2468 161-235 f a.5 4334 4334.1 4334.1.1 beta complex topology Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins 000002339 e2ex2A1 002993964 Q87LZ0_nD1 Q87LZ0 Q87LZ0_VIBPA VP2468 2468 81-160,236-280 f a.17 2494 2494.2 2494.2.1 a/b three-layered sandwiches DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins 000011457 e2ex2A4 002993965 Q87GE9_nD1 Q87GE9 Q87GE9_VIBPA VPA1367 4446 21-80 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 000157557 e1yj7A2 002993966 Q87GE9_nD2 Q87GE9 Q87GE9_VIBPA VPA1367 4446 86-175 f a.11 327 327.13 327.13.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif I in type III secretion system Ring-building motif I in type III secretion system 001935466 e5tcpL2 002993967 Q87FN5_nD2 Q87FN5 Q87FN5_VIBPA VPA1643 4722 221-265 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000143968 e3ph0C1 002993968 Q87FN5_nD1 Q87FN5 Q87FN5_VIBPA VPA1643 4722 21-205 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 002041894 e5ikuA1 002993969 Q87SN0_nD2 Q87SN0 Q87SN0_VIBPA VP0392 Elongation factor Ts 392 91-120 f a.6 640 640.2 640.2.1 alpha arrays Methane monooxygenase hydrolase gamma subunit-like SidM C-terminal P4M domain SidM C-terminal P4M domain 001147633 e4mxpA2 002993970 Q87SN0_nD1 Q87SN0 Q87SN0_VIBPA VP0392 Elongation factor Ts 392 6-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001563574 e2mqkA1 002993971 Q87FQ1_nD1 Q87FQ1 Q87FQ1_VIBPA VPA1627 Copper chaperone PCu(A)C 4706 26-145 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 001140726 e3zk0A1 002993972 Q87GN4_nD2 Q87GN4 Q87GN4_VIBPA VPA1281 4360 131-255 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000006774 e1xeaA1 002993973 Q87GN4_nD1 Q87GN4 Q87GN4_VIBPA VPA1281 4360 1-130,261-305 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009135 e1xeaA2 002993974 Q87MG1_nD1 Q87MG1 Q87MG1_VIBPA VP2294 2294 1-225 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002099200 e5x62B1 002993975 Q87NG7_nD1 Q87NG7 Q87NG7_VIBPA VP1901 1901 36-220 f a.1 5084 5084.2 5084.2.1 beta barrels Outer membrane meander beta-barrels OMPT-like OMPT-like 000139979 e2x4mA1 002993976 Q87NR4_nD1 Q87NR4 Q87NR4_VIBPA VP1804 SnoaL-like domain-containing protein 1804 6-125 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 001086744 e4lmiB1 002993977 Q87LG5_nD1 Q87LG5 Q87LG5_VIBPA VP2647 DUF2061 domain-containing protein 2646 1-115 f a.6 4953 4953.1 4953.1.1 alpha arrays L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like 001153052 e1y2mB5 002993978 Q87HK5_nD1 Q87HK5 Q87HK5_VIBPA VPA0958 4037 1-134 f a.17 2007 2007.2 2007.2.5 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Rhodanese/Cell cycle control phosphatase 001778171 e3nt6A2 002993979 Q87S93_nD1 Q87S93 RS20_VIBPA VP0531 rpsT 30S ribosomal protein S20 531 1-85 f a.7 604 604.9 604.9.1 alpha bundles Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20 002093024 e5o5jT1 002993980 Q87HF6_nD2 Q87HF6 Q87HF6_VIBPA VPA1009 AAA domain-containing protein 4088 226-320 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000185423 e3nbxX2 002993981 Q87HF6_nD1 Q87HF6 Q87HF6_VIBPA VPA1009 AAA domain-containing protein 4088 11-225 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000185422 e3nbxX1 002993982 Q87HF6_nD3 Q87HF6 Q87HF6_VIBPA VPA1009 AAA domain-containing protein 4088 346-465 f a.1 3293 3293.1 3293.1.1 beta barrels LARA domain LARA domain LARA domain 002578873 e6q7mU3 002993983 Q87HF6_nD4 Q87HF6 Q87HF6_VIBPA VPA1009 AAA domain-containing protein 4088 321-345,466-553 f a.7 603 603.1 603.1.1 alpha bundles STAT-like t-snare proteins t-snare proteins 000143896 e3onjA1 002993984 Q87G22_nD2 Q87G22 Q87G22_VIBPA VPA1495 4574 266-540 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002993985 Q87G22_nD1 Q87G22 Q87G22_VIBPA VPA1495 4574 6-260 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002993986 Q87GB8_nD1 Q87GB8 MALG_VIBPA VPA1399 malG Maltose/maltodextrin transport system permease protein MalG 4478 6-295 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000419604 e3puyG1 002993987 Q87IZ5_nD2 Q87IZ5 Q87IZ5_VIBPA VPA0461 Alpha-amylase 3540 376-449 f a.3 12 12.1 12.1.1 beta sandwiches Glycosyl hydrolase domain-like Glycosyl hydrolase domain Glycosyl hydrolase domain 000138869 e3hjeA2 002993988 Q87IZ5_nD1 Q87IZ5 Q87IZ5_VIBPA VPA0461 Alpha-amylase 3540 1-375 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000094279 e1l0pA2 002993989 Q87S76_nD1 Q87S76 Q87S76_VIBPA VP0548 548 41-110 f a.8 3939 3939.1 3939.1.1 alpha duplicates or obligate multimers XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain XRCC4 C-terminal oligomerization domain 001494453 e4ll7A1 002993990 Q87S76_nD2 Q87S76 Q87S76_VIBPA VP0548 548 136-315 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 000007555 e1qwyA1 002993991 Q87IY1_nD1 Q87IY1 Q87IY1_VIBPA VPA0475 Lipoprotein 3554 1-50 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001807464 e4ytlA1 002993992 Q87PM0_nD2 Q87PM0 Q87PM0_VIBPA VP1482 1482 136-323 f a.15 866 866.1 866.1.1 a+b duplicates or obligate multimers CheC-like CheC-like CheC-like 000142897 e3qtaA1 002993993 Q87PM0_nD1 Q87PM0 Q87PM0_VIBPA VP1482 1482 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000167358 e3cfyA1 002993994 Q03476_nD1 Q03476 LAFL_VIBPA VPA1554 lafL Flagellar protein LafL 4633 6-30 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002993995 Q03476_nD2 Q03476 LAFL_VIBPA VPA1554 lafL Flagellar protein LafL 4633 66-165 f a.11 230 230.6 230.6.1 a+b two layers T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain 001429540 e4v4nBA2 002993996 Q87GY5_nD1 Q87GY5 TAL_VIBPA VPA1180 tal Transaldolase 4259 1-315 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000139647 e3m16A1 002993997 Q87NM6_nD1 Q87NM6 Q87NM6_VIBPA VP1842 1842 26-95 f a.6 101 101.1 101.1.11 alpha arrays HTH HTH Ribbon-helix-helix 002715699 e6x0ap1 002993998 Q87ID5_nD2 Q87ID5 Q87ID5_VIBPA VPA0671 3750 16-160,371-530 f a.8 5079 5079.1 5079.1.1 alpha duplicates or obligate multimers Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain Magnesium transporter MgtE membrane domain 002101903 e5x9hA2 002993999 Q87ID5_nD1 Q87ID5 Q87ID5_VIBPA VPA0671 3750 6-15,166-355 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 000137835 e3l39A1 002994000 Q87ID5_nD3 Q87ID5 Q87ID5_VIBPA VPA0671 3750 536-715 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 000137835 e3l39A1 002994001 Q87PT0_nD1 Q87PT0 Q87PT0_VIBPA VP1421 Tellurium resistance protein TerC 1421 1-80 f a.7 6158 6158.1 6158.1.1 alpha bundles Nucleoporin p58/p45 helical region Nucleoporin p58/p45 helical region Nucleoporin p58/p45 helical region 001710813 e4jo7G1 002994002 Q87PD7_nD1 Q87PD7 Q87PD7_VIBPA VP1577 TrwB_AAD_bind domain-containing protein 1577 16-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001414911 e4d2iB2 002994003 Q87KX0_nD1 Q87KX0 PFKA_VIBPA VP2855 pfkA ATP-dependent 6-phosphofructokinase 2854 1-140,261-300 f a.17 2007 2007.1 2007.1.4 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain 001107966 e1pfkA2 002994004 Q87KX0_nD2 Q87KX0 PFKA_VIBPA VP2855 pfkA ATP-dependent 6-phosphofructokinase 2854 141-260 f a.17 7572 7572.1 7572.1.1 a/b three-layered sandwiches Phosphofructokinase C-terminal domain Phosphofructokinase C-terminal domain Phosphofructokinase C-terminal domain 001649418 e4a3sB1 002994005 Q87QQ5_nD1 Q87QQ5 Q87QQ5_VIBPA VP1094 Transporter 1094 16-325 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001725977 e5bz3A1 002994006 Q87MN7_nD1 Q87MN7 Q87MN7_VIBPA VP2194 2194 1-250 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000112902 e2vbaC1 002994007 Q87MN7_nD2 Q87MN7 Q87MN7_VIBPA VP2194 2194 251-400 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002634731 e6smpH1 002994008 Q87SF9_nD1 Q87SF9 LPXC_VIBPA VP0465 lpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase 465 1-300 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 002448160 e6caxA1 002994009 Q87MZ8_nD1 Q87MZ8 Q87MZ8_VIBPA VP2078 2078 1-260 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000222378 e4fwiB1 002994010 Q87P94_nD1 Q87P94 Q87P94_VIBPA VP1624 1624 16-220 f a.7 3890 3890.1 3890.1.1 alpha bundles Transmembrane Bax inhibitor motif (TMBIM) proteins Transmembrane Bax inhibitor motif (TMBIM) proteins Transmembrane Bax inhibitor motif (TMBIM) proteins 001318710 e4pgrA1 002994011 Q87S64_nD1 Q87S64 Q87S64_VIBPA VP0560 Purine nucleoside phosphorylase 560 6-240 f a.13 288 288.1 288.1.1 a+b four layers CNF1/YfiH-like putative cysteine hydrolases CNF1/YfiH-like putative cysteine hydrolases CNF1/YfiH-like putative cysteine hydrolases 002526976 e6dzdA1 002994012 Q87KQ2_nD1 Q87KQ2 RL10_VIBPA VP2924 rplJ 50S ribosomal protein L10 2923 1-160 f a.11 304 304.60 304.60.1 a+b two layers Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like 000005389 e1zavA1 002994013 Q87IY8_nD2 Q87IY8 Q87IY8_VIBPA VPA0468 3547 51-140,481-754 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000422978 e3muoA2 002994014 Q87IY8_nD1 Q87IY8 Q87IY8_VIBPA VPA0468 3547 141-480 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 000139092 e3iujA1 002994015 Q87NW2_nD1 Q87NW2 Q87NW2_VIBPA VP1756 Phosphate ABC transporter substrate-binding protein 1756 36-155 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001523066 e3w9wA2 002994016 Q87L62_nD2 Q87L62 Q87L62_VIBPA VP2750 2749 166-330 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000411876 e3qbxB1 002994017 Q87L62_nD1 Q87L62 Q87L62_VIBPA VP2750 2749 1-165 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001824495 e5eq6A1 002994018 Q87NJ6_nD1 Q87NJ6 Q87NJ6_VIBPA VP1872 Tryptophan-rich sensory protein 1872 26-60 f a.21 5028 5028.1 5028.1.1 extended segments Sec-beta subunit Sec-beta subunit Sec-beta subunit 000004745 e1rh5C1 002994019 Q87M59_nD1 Q87M59 Q87M59_VIBPA VP2399 Galactose-1-phosphate uridylyltransferase 2399 6-85,106-345 f a.12 312 312.1 312.1.1 a+b three layers HIT-like HIT-related HIT-related 000078847 e1gupA1 002994020 Q87JZ6_nD1 Q87JZ6 Q87JZ6_VIBPA VPA0102 3181 31-295 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 002717534 e6xuxA2 002994021 Q87JZ6_nD2 Q87JZ6 Q87JZ6_VIBPA VPA0102 3181 296-895 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 000982556 e3w7tB2 002994022 Q87P21_nD1 Q87P21 Q87P21_VIBPA VP1697 1697 1-130 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 002171511 e5z38C1 002994023 Q87FU6_nD1 Q87FU6 Q87FU6_VIBPA VPA1582 Ion_trans_2 domain-containing protein 4661 16-230 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 001842136 e5iwpA2 002994024 Q87FY8_nD1 Q87FY8 Q87FY8_VIBPA VPA1532 Flagellar FliJ protein 4611 1-145 f a.7 3755 3755.1 3755.1.1 alpha bundles YscO-like Putative type III secretion protein YscO-related Putative type III secretion protein YscO-related 001097271 e4mh6A1 002994025 Q87SK6_nD1 Q87SK6 Q87SK6_VIBPA VP0417 SH3b domain-containing protein 417 21-90 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001828190 e3m1uB1 002994026 Q87SK6_nD2 Q87SK6 Q87SK6_VIBPA VP0417 SH3b domain-containing protein 417 91-160 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002816307 e6z26B1 002994027 Q87SK6_nD3 Q87SK6 Q87SK6_VIBPA VP0417 SH3b domain-containing protein 417 161-190 f a.21 7100 7100.1 7100.1.1 extended segments Notch transmembrane helix Notch transmembrane helix Notch transmembrane helix 002526322 e6idfE1 002994028 Q87RD2_nD2 Q87RD2 Q87RD2_VIBPA VP0865 865 1-240,381-635 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002429156 e6fwrA2 002994029 Q87RD2_nD1 Q87RD2 Q87RD2_VIBPA VP0865 865 241-375 f a.11 3636 3636.1 3636.1.1 a+b two layers XPD arch domain XPD arch domain XPD arch domain 002429157 e6fwrA3 002994030 Q87JX5_nD1 Q87JX5 Q87JX5_VIBPA VPA0123 3202 11-164 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000009915 e1zs9A1 002994031 Q79YX5_nD1 Q79YX5 Q79YX5_VIBPA VP1562 1562 6-100 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000317770 e2ox6C1 002994032 Q87G39_nD1 Q87G39 Q87G39_VIBPA VPA1478 4557 1-525 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002439622 e6af0A1 002994033 Q87TH3_nD2 Q87TH3 Q87TH3_VIBPA VP0096 ubiJ Ubiquinone biosynthesis accessory factor UbiJ 96 171-200 f a.7 604 604.1 604.1.1 alpha bundles Spectrin repeat-like Spectrin repeat Spectrin repeat 002736839 e6z0lD1 002994034 Q87TH3_nD1 Q87TH3 Q87TH3_VIBPA VP0096 ubiJ Ubiquinone biosynthesis accessory factor UbiJ 96 6-115 f a.11 268 268.1 268.1.1 a+b two layers Sterol carrier protein-like Sterol carrier protein, SCP-related Sterol carrier protein, SCP-related 002448259 e6h6nA1 002994035 Q87LD9_nD2 Q87LD9 Y2673_VIBPA VP2673 Nucleotide-binding protein VP2673 2672 161-280 f a.17 7572 7572.1 7572.1.1 a/b three-layered sandwiches Phosphofructokinase C-terminal domain Phosphofructokinase C-terminal domain Phosphofructokinase C-terminal domain 002326688 e5o5oA1 002994036 Q87LD9_nD1 Q87LD9 Y2673_VIBPA VP2673 Nucleotide-binding protein VP2673 2672 1-160 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002326689 e5o5oA2 002994037 Q87L18_nD2 Q87L18 Q87L18_VIBPA VP2799 2798 181-300 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001628546 e3f8tA2 002994038 Q87L18_nD5 Q87L18 Q87L18_VIBPA VP2799 2798 846-950 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001108152 e4n0rA1 002994039 Q87L18_nD1 Q87L18 Q87L18_VIBPA VP2799 2798 26-170 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000145616 e2lllA1 002994040 Q87L18_nD3 Q87L18 Q87L18_VIBPA VP2799 2798 301-360,381-460 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001016345 e4joiC1 002994041 Q87L18_nD4 Q87L18 Q87L18_VIBPA VP2799 2798 361-380,461-733,756-845 f a.13 246 246.3 246.3.1 a+b four layers Carbon-nitrogen hydrolase-like DNase I-like DNase I-like 002633973 e6rw0A1 002994042 Q87HV8_nD1 Q87HV8 Q87HV8_VIBPA VPA0848 DUF2164 domain-containing protein 3927 6-45 f a.11 315 315.1 315.1.1 a+b two layers Tautomerase/MIF-like Tautomerase/MIF Tautomerase/MIF 000140487 e3m20A1 002994043 Q87HV8_nD2 Q87HV8 Q87HV8_VIBPA VPA0848 DUF2164 domain-containing protein 3927 46-75 f a.7 192 192.2 192.2.1 alpha bundles Long alpha-hairpin Prefoldin Prefoldin 000391362 e3aeiB1 002994044 Q87KZ0_nD1 Q87KZ0 Q87KZ0_VIBPA VP2834 2833 16-50 f a.7 3860 3860.1 3860.1.1 alpha bundles Myosin VI lever arm Myosin VI lever arm Myosin VI lever arm 001547280 e1i84S3 002994045 Q87KZ0_nD2 Q87KZ0 Q87KZ0_VIBPA VP2834 2833 51-210 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002994046 Q87KZ0_nD3 Q87KZ0 Q87KZ0_VIBPA VP2834 2833 231-368 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 001064606 e4bh5C1 002994047 Q87II8_nD3 Q87II8 Q87II8_VIBPA VPA0618 3697 241-385 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 002062663 e5ez3B4 002994048 Q87II8_nD1 Q87II8 Q87II8_VIBPA VPA0618 3697 6-125 f a.6 4033 4033.1 4033.1.1 alpha arrays Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like 000303826 e2ix5A2 002994049 Q87II8_nD2 Q87II8 Q87II8_VIBPA VPA0618 3697 126-240 f a.5 4052 4052.1 4052.1.1 beta complex topology Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like 000163920 e2jifA1 002994050 Q87QU8_nD2 Q87QU8 RUVA_VIBPA VP1051 ruvA Holliday junction ATP-dependent DNA helicase RuvA 1051 66-145 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002952 e1cukA2 002994051 Q87QU8_nD1 Q87QU8 RUVA_VIBPA VP1051 ruvA Holliday junction ATP-dependent DNA helicase RuvA 1051 1-65 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000290 e1cukA1 002994052 Q87QU8_nD3 Q87QU8 RUVA_VIBPA VP1051 ruvA Holliday junction ATP-dependent DNA helicase RuvA 1051 151-204 f a.6 103 103.1 103.1.1 alpha arrays RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1 001032651 e1c7yA3 002994053 Q87T34_nD3 Q87T34 Q87T34_VIBPA VP0236 UDP-glucose 6-dehydrogenase 236 286-385 f a.17 2003 2003.1 2003.1.12 a/b three-layered sandwiches Rossmann-like Rossmann-related UDPG/MGDP dehydrogenase C-terminal domain 000009801 e1dljA3 002994054 Q87T34_nD1 Q87T34 Q87T34_VIBPA VP0236 UDP-glucose 6-dehydrogenase 236 1-205 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000185462 e3pidA1 002994055 Q87T34_nD2 Q87T34 Q87T34_VIBPA VP0236 UDP-glucose 6-dehydrogenase 236 206-285 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000185463 e3pidA2 002994056 P46235_nD2 P46235 LGUL_VIBPA VP2109 gloA Probable lactoylglutathione lyase 2109 71-130 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001388676 e4mtsA2 002994057 P46235_nD1 P46235 LGUL_VIBPA VP2109 gloA Probable lactoylglutathione lyase 2109 6-70 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160758 e3zi1A8 002994058 Q87I93_nD1 Q87I93 Q87I93_VIBPA VPA0713 EAL domain-containing protein 3792 1-248 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002519516 e6hq7A1 002994059 Q87NW6_nD1 Q87NW6 Q87NW6_VIBPA VP1752 1752 26-240 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000168022 e2vq2A1 002994060 Q87LZ5_nD1 Q87LZ5 Q87LZ5_VIBPA VP2463 ftsH ATP-dependent zinc metalloprotease FtsH 2463 31-95 f a.11 4263 4263.2 4263.2.1 a+b two layers TTHA1528-like FtsH Periplasmic Domain FtsH Periplasmic Domain 001491777 e2muyA1 002994061 Q87LZ5_nD2 Q87LZ5 Q87LZ5_VIBPA VP2463 ftsH ATP-dependent zinc metalloprotease FtsH 2463 1-25,111-325 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000160993 e2dhrA1 002994062 Q87LZ5_nD4 Q87LZ5 Q87LZ5_VIBPA VP2463 ftsH ATP-dependent zinc metalloprotease FtsH 2463 401-605 f a.6 4070 4070.1 4070.1.1 alpha arrays FtsH protease domain-like FtsH protease domain-like FtsH protease domain-like 002138498 e6az0B1 002994063 Q87LZ5_nD3 Q87LZ5 Q87LZ5_VIBPA VP2463 ftsH ATP-dependent zinc metalloprotease FtsH 2463 326-400 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 000365212 e3h4mB1 002994064 Q87GL6_nD2 Q87GL6 Q87GL6_VIBPA VPA1299 4378 76-185 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000166722 e3bqyA2 002994065 Q87GL6_nD1 Q87GL6 Q87GL6_VIBPA VPA1299 4378 6-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002407647 e5yekB1 002994066 Q87SP4_nD1 Q87SP4 Q87SP4_VIBPA VP0378 D-fructose-6-phosphate amidotransferase 378 6-70 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002083250 e5vo5A1 002994067 Q87RS3_nD1 Q87RS3 Q87RS3_VIBPA VP0704 Lipoprotein 704 31-110,226-269 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002994068 Q87RS3_nD2 Q87RS3 Q87RS3_VIBPA VP0704 Lipoprotein 704 111-225 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002994069 Q87Q29_nD1 Q87Q29 Q87Q29_VIBPA VP1321 1321 1-348 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002546345 e6h0nB1 002994070 Q87II1_nD1 Q87II1 Q87II1_VIBPA VPA0625 3-hydroxyisobutyrate dehydrogenase 3704 1-170 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002407525 e5y8lB1 002994071 Q87II1_nD2 Q87II1 Q87II1_VIBPA VPA0625 3-hydroxyisobutyrate dehydrogenase 3704 171-295 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 001901143 e2gf2A1 002994072 Q87JZ3_nD2 Q87JZ3 Q87JZ3_VIBPA VPA0105 3184 81-145,246-275 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549389 e4y0mB1 002994073 Q87JZ3_nD1 Q87JZ3 Q87JZ3_VIBPA VPA0105 3184 1-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000382016 e3fxqB1 002994074 Q87JZ3_nD3 Q87JZ3 Q87JZ3_VIBPA VPA0105 3184 146-245 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002994075 Q87IA2_nD3 Q87IA2 Q87IA2_VIBPA VPA0704 Peptidase_M48 domain-containing protein 3783 506-610 f a.6 4198 4198.1 4198.1.1 alpha arrays TerB-like TerB-like TerB-like 000002945 e2h5nA1 002994076 Q87IA2_nD2 Q87IA2 Q87IA2_VIBPA VPA0704 Peptidase_M48 domain-containing protein 3783 381-495 f a.6 4198 4198.1 4198.1.1 alpha arrays TerB-like TerB-like TerB-like 000002945 e2h5nA1 002994077 Q87IA2_nD1 Q87IA2 Q87IA2_VIBPA VPA0704 Peptidase_M48 domain-containing protein 3783 6-335 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000868122 e4il3B1 002994078 Q87S78_nD1 Q87S78 Q87S78_VIBPA VP0546 Phospho-2-dehydro-3-deoxyheptonate aldolase 546 6-350 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001883448 e5dceD1 002994079 Q87MZ2_nD3 Q87MZ2 Q87MZ2_VIBPA VP2084 DUF4010 domain-containing protein 2084 206-295,346-424 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001562401 e4y21A1 002994080 Q87MZ2_nD2 Q87MZ2 Q87MZ2_VIBPA VP2084 DUF4010 domain-containing protein 2084 146-205,311-330 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002584014 e6up7R1 002994081 Q87MZ2_nD1 Q87MZ2 Q87MZ2_VIBPA VP2084 DUF4010 domain-containing protein 2084 1-145 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002082799 e5khnB2 002994082 Q87S04_nD1 Q87S04 Q87S04_VIBPA VP0620 Acetate uptake transporter 620 6-190 f a.10 3543 3543.1 3543.1.1 alpha complex topology Acid-activated urea channel Acid-activated urea channel Acid-activated urea channel 002420860 e5ys3A1 002994083 Q87R96_nD1 Q87R96 Q87R96_VIBPA VP0901 SLT domain-containing protein 901 81-240 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001866861 e5anzA1 002994084 Q87LP0_nD2 Q87LP0 ERA_VIBPA VP2571 era GTPase Era 2570 201-315 f a.11 327 327.11 327.11.1 a+b two layers Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II) 000005912 e1wf3A1 002994085 Q87LP0_nD1 Q87LP0 ERA_VIBPA VP2571 era GTPase Era 2570 6-200 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002624825 e6jtgA1 002994086 Q87IA3_nD1 Q87IA3 Q87IA3_VIBPA VPA0703 NADH:ubiquinone oxidoreductase 3782 1-110 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002673050 e6wk9B1 002994087 Q87H96_nD1 Q87H96 Q87H96_VIBPA VPA1069 4148 26-635 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001392211 e4gyoB1 002994088 Q87K82_nD1 Q87K82 Q87K82_VIBPA VPA0015 3095 1-230 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002994089 Q87N28_nD1 Q87N28 Q87N28_VIBPA VP2047 2047 1-255 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008933 e1yixA1 002994090 Q87NH9_nD1 Q87NH9 Q87NH9_VIBPA VP1889 1889 6-70 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000137589 e3i2zB1 002994091 Q87J48_nD1 Q87J48 Q87J48_VIBPA VPA0405 Peptidase_M14 domain-containing protein 3484 21-305 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001397396 e4okoA1 002994092 Q87PV8_nD1 Q87PV8 Q87PV8_VIBPA VP1392 1392 1-160 f a.6 148 148.1 148.1.2 alpha arrays Histone-like Histone-related double Clp-N 001405080 e4uqwA1 002994093 Q87PV8_nD2 Q87PV8 Q87PV8_VIBPA VP1392 1392 166-355 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009748 e1jbkA1 002994094 Q87PV8_nD3 Q87PV8 Q87PV8_VIBPA VP1392 1392 356-580,796-890 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002399789 e6e1033 002994095 Q87PV8_nD4 Q87PV8 Q87PV8_VIBPA VP1392 1392 581-795 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001117526 e1g41A2 002994096 Q87K04_nD1 Q87K04 Q87K04_VIBPA VPA0094 Cupin_2 domain-containing protein 3173 6-103 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000314895 e2opkD1 002994097 Q87J61_nD4 Q87J61 Q87J61_VIBPA VPA0392 TackOD1 domain-containing protein 3471 311-458 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001710698 e3i5cB1 002994098 Q87J61_nD3 Q87J61 Q87J61_VIBPA VPA0392 TackOD1 domain-containing protein 3471 181-210,251-285 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000008041 e2fiyA1 002994099 Q87J61_nD2 Q87J61 Q87J61_VIBPA VPA0392 TackOD1 domain-containing protein 3471 211-250 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002543587 e6htjA2 002994100 Q87J61_nD1 Q87J61 Q87J61_VIBPA VPA0392 TackOD1 domain-containing protein 3471 11-180,286-305 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001922234 e5trdA2 002994101 P59562_nD1 P59562 Y1617_VIBPA VP1617 UPF0234 protein VP1617 1617 6-95 f a.11 304 304.36 304.36.1 a+b two layers Alpha-beta plaits YajQ-like YajQ-like 001884599 e5b7wA1 002994102 P59562_nD2 P59562 Y1617_VIBPA VP1617 UPF0234 protein VP1617 1617 96-160 f a.11 304 304.36 304.36.1 a+b two layers Alpha-beta plaits YajQ-like YajQ-like 001884600 e5b7wA2 002994103 Q87GL1_nD1 Q87GL1 Q87GL1_VIBPA VPA1304 4383 6-239 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001543357 e4nbtA1 002994104 Q87PH9_nD1 Q87PH9 Q87PH9_VIBPA VP1523 1523 26-420 f a.10 5049 5049.1 5049.1.1 alpha complex topology Ammonium transporter-related Ammonium transporter-related Ammonium transporter 002142445 e6eu6A1 002994105 Q87GI2_nD1 Q87GI2 Q87GI2_VIBPA VPA1334 Type III secretion protein 4413 1-124 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 000006632 e2fm8A1 002994106 Q87TB6_nD1 Q87TB6 Q87TB6_VIBPA VP0154 154 6-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002994107 Q87TB6_nD2 Q87TB6 Q87TB6_VIBPA VP0154 154 136-235 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002771295 e6zwtA1 002994108 Q87I65_nD2 Q87I65 Q87I65_VIBPA VPA0741 3820 131-200 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 000002762 e1yioA1 002994109 Q87I65_nD1 Q87I65 Q87I65_VIBPA VPA0741 3820 6-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002138611 e5o8zA1 002994110 Q87JX2_nD1 Q87JX2 Q87JX2_VIBPA VPA0126 3205 6-170 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000427328 e3tcvB1 002994111 Q87K23_nD4 Q87K23 Q87K23_VIBPA VPA0075 Histidine kinase 3154 471-620 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002994112 Q87K23_nD3 Q87K23 Q87K23_VIBPA VPA0075 Histidine kinase 3154 276-470 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001179387 e3k7dA3 002994113 Q87K23_nD1 Q87K23 Q87K23_VIBPA VPA0075 Histidine kinase 3154 6-140 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002573886 e6uqfD1 002994114 Q87K23_nD2 Q87K23 Q87K23_VIBPA VPA0075 Histidine kinase 3154 146-275 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 002648937 e7jm7C2 002994115 Q87PG6_nD1 Q87PG6 Q87PG6_VIBPA VP1536 1536 11-160 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001719325 e5e44A2 002994116 Q87PG6_nD2 Q87PG6 Q87PG6_VIBPA VP1536 1536 161-245 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001719254 e5cvrA1 002994117 Q87LQ3_nD1 Q87LQ3 ISPF_VIBPA VP2558 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2558 1-158 f a.12 301 301.5 301.5.1 a+b three layers Bacillus chorismate mutase-like 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF 000079243 e2gzlA1 002994118 Q87S63_nD1 Q87S63 CLPB_VIBPA VP0561 clpB Chaperone protein ClpB 561 1-155 f a.6 148 148.1 148.1.2 alpha arrays Histone-like Histone-related double Clp-N 002067347 e5u2uC1 002994119 Q87S63_nD2 Q87S63 CLPB_VIBPA VP0561 clpB Chaperone protein ClpB 561 161-340 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009748 e1jbkA1 002994120 Q87S63_nD5 Q87S63 CLPB_VIBPA VP0561 clpB Chaperone protein ClpB 561 766-855 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001291954 e4ciuA4 002994121 Q87S63_nD3 Q87S63 CLPB_VIBPA VP0561 clpB Chaperone protein ClpB 561 341-545 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002393117 e6azyA5 002994122 Q87S63_nD4 Q87S63 CLPB_VIBPA VP0561 clpB Chaperone protein ClpB 561 546-765 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001117526 e1g41A2 002994123 Q87R18_nD1 Q87R18 Q87R18_VIBPA VP0980 DUF2062 domain-containing protein 980 31-165 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002137468 e5nenB1 002994124 Q87I57_nD1 Q87I57 Q87I57_VIBPA VPA0749 Probable membrane transporter protein 3828 6-235 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002994125 Q87LZ1_nD1 Q87LZ1 OMPU_VIBPA VP2467 ompU Outer membrane protein U 2467 11-335 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002327394 e6ehbC1 002994126 Q87J76_nD2 Q87J76 Q87J76_VIBPA VPA0377 Ribosome recycling factor 3456 86-130 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002724311 e7bzhA1 002994127 Q87J76_nD1 Q87J76 Q87J76_VIBPA VPA0377 Ribosome recycling factor 3456 6-80 f a.11 327 327.11 327.11.2 a+b two layers Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I) 001077376 e2jzxA2 002994128 Q87JI9_nD1 Q87JI9 Q87JI9_VIBPA VPA0260 SLT domain-containing protein 3339 51-215 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001526271 e4p11A1 002994129 Q87JI0_nD1 Q87JI0 Q87JI0_VIBPA VPA0273 flgK Flagellar hook-associated protein 1 3352 1-65,416-455 f a.11 3747 3747.1 3747.1.1 a+b two layers Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain Flagellar hook protein FlgE D0 domain 002734730 e7nvgV21 002994130 Q87JI0_nD2 Q87JI0 Q87JI0_VIBPA VPA0273 flgK Flagellar hook-associated protein 1 3352 66-415 f a.7 601 601.52 601.52.1 alpha bundles Four-helical up-and-down bundle Flagellar hook-associated protein 1 helical domain Flagellar hook-associated protein 1 helical domain 001501272 e2d4yA1 002994131 Q87R36_nD3 Q87R36 Q87R36_VIBPA VP0962 DUF1887 family protein 962 246-380 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 001030945 e1xmxA3 002994132 Q87R36_nD2 Q87R36 Q87R36_VIBPA VP0962 DUF1887 family protein 962 161-245 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001030944 e1xmxA2 002994133 Q87R36_nD1 Q87R36 Q87R36_VIBPA VP0962 DUF1887 family protein 962 1-150 f a.17 7592 7592.1 7592.1.1 a/b three-layered sandwiches CARF (CRISPR-associated Rossmann fold) domains CARF (CRISPR-associated Rossmann fold) domains CARF (CRISPR-associated Rossmann fold) domains 001030943 e1xmxA4 002994134 Q87T70_nD1 Q87T70 Q87T70_VIBPA VP0200 200 1-285 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000224542 e4ipiA2 002994135 Q87T70_nD2 Q87T70 Q87T70_VIBPA VP0200 200 291-355 f a.1 70 70.3 70.3.1 beta barrels beta-clip SET domain-like SET domain-like 000136389 e2wqpA1 002994136 Q87QT6_nD1 Q87QT6 NADA_VIBPA VP1063 nadA Quinolinate synthase 1063 16-110,301-345 f a.17 7588 7588.1 7588.1.1 a/b three-layered sandwiches NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase 001285190 e4p3xA1 002994137 Q87QT6_nD2 Q87QT6 NADA_VIBPA VP1063 nadA Quinolinate synthase 1063 111-200 f a.17 7588 7588.1 7588.1.1 a/b three-layered sandwiches NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase 001883975 e5f35A2 002994138 Q87QT6_nD3 Q87QT6 NADA_VIBPA VP1063 nadA Quinolinate synthase 1063 201-300 f a.17 7588 7588.1 7588.1.1 a/b three-layered sandwiches NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase 001883974 e5f35A1 002994139 Q87MG9_nD1 Q87MG9 Q87MG9_VIBPA VP2286 purN Phosphoribosylglycinamide formyltransferase 2286 1-210 f a.17 7571 7571.1 7571.1.1 a/b three-layered sandwiches Formyltransferase Formyltransferase Formyltransferase 000110206 e1c3eA1 002994140 Q87NV1_nD3 Q87NV1 Q87NV1_VIBPA VP1767 BIG2 domain-containing protein 1767 271-355 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002516727 e6hhuA1 002994141 Q87NV1_nD4 Q87NV1 Q87NV1_VIBPA VP1767 BIG2 domain-containing protein 1767 356-440 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002516727 e6hhuA1 002994142 Q87NV1_nD6 Q87NV1 Q87NV1_VIBPA VP1767 BIG2 domain-containing protein 1767 546-730 f a.14 209 209.1 209.1.1 a+b complex topology C-type lectin-like C-type lectin-like C-type lectin-like 002066820 e5n40A3 002994143 Q87NV1_nD1 Q87NV1 Q87NV1_VIBPA VP1767 BIG2 domain-containing protein 1767 96-180 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002516727 e6hhuA1 002994144 Q87NV1_nD2 Q87NV1 Q87NV1_VIBPA VP1767 BIG2 domain-containing protein 1767 186-270 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002516727 e6hhuA1 002994145 Q87NV1_nD5 Q87NV1 Q87NV1_VIBPA VP1767 BIG2 domain-containing protein 1767 441-525 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002516728 e6hhuA2 002994146 Q87K75_nD1 Q87K75 Q87K75_VIBPA VPA0023 Peptidyl-prolyl cis-trans isomerase 3102 1-164 f a.1 75 75.1 75.1.1 beta barrels Cyclophilin-like Cyclophilin-like Cyclophilin-like 002790983 e7rfdA1 002994147 Q87P58_nD1 Q87P58 Q87P58_VIBPA VP1660 1660 6-50 f a.8 105 105.1 105.1.1 alpha duplicates or obligate multimers HLH-like HLH, helix-loop-helix DNA-binding domain HLH, helix-loop-helix DNA-binding domain 002793164 e7d8tB2 002994148 Q87GS2_nD2 Q87GS2 Q87GS2_VIBPA VPA1243 4322 1-50,366-420 f a.3 65 65.1 65.1.1 beta sandwiches Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 000001019 e1ra0A1 002994149 Q87GS2_nD1 Q87GS2 Q87GS2_VIBPA VPA1243 4322 51-365 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008915 e1ra0A2 002994150 Q87TP8_nD1 Q87TP8 SYGB_VIBPA VP0021 glyS Glycine--tRNA ligase beta subunit 21 1-220 f a.11 304 304.20 304.20.1 a+b two layers Alpha-beta plaits PAP/Archaeal CCA-adding enzyme, C-terminal domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 000005289 e1r89A2 002994151 Q87TP8_nD2 Q87TP8 SYGB_VIBPA VP0021 glyS Glycine--tRNA ligase beta subunit 21 221-325 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001145929 e2rhsB4 002994152 Q87TP8_nD3 Q87TP8 SYGB_VIBPA VP0021 glyS Glycine--tRNA ligase beta subunit 21 326-530 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 001498254 e4s1bA1 002994153 Q87TP8_nD4 Q87TP8 SYGB_VIBPA VP0021 glyS Glycine--tRNA ligase beta subunit 21 531-685 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002488180 e1f7uA1 002994154 Q87HM3_nD1 Q87HM3 Q87HM3_VIBPA VPA0940 Anaerobic ribonucleoside-triphosphate reductase-activating protein 4019 1-150 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001014986 e4k38A1 002994155 Q87PE4_nD3 Q87PE4 Q87PE4_VIBPA VP1567 Heparin lyase 1567 281-365 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001886752 e5f7uA2 002994156 Q87PE4_nD2 Q87PE4 Q87PE4_VIBPA VP1567 Heparin lyase 1567 46-60,96-275 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 000399921 e2xonL1 002994157 Q87PE4_nD1 Q87PE4 Q87PE4_VIBPA VP1567 Heparin lyase 1567 21-45 f a.7 633 633.12 633.12.1 alpha bundles Bromodomain-like Ta0600-like Ta0600-like 000150895 e2lseA1 002994158 Q87Q11_nD1 Q87Q11 Q87Q11_VIBPA VP1339 Regulator 1339 6-145 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 000221858 e4iggB3 002994159 Q87HI7_nD1 Q87HI7 Q87HI7_VIBPA VPA0976 Nitrous oxide-stimulated promoter family protein 4055 1-130 f a.6 4979 4979.1 4979.1.1 alpha arrays C-terminal domain of Hypothetical protein MPN330-like C-terminal domain of Hypothetical protein MPN330 C-terminal domain of Hypothetical protein MPN330 000002946 e1td6A1 002994160 Q87FE9_nD1 Q87FE9 PDXH_VIBPA VPA1730 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase 4809 6-210 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 002723540 e6ylzAAA1 002994161 Q87JT1_nD2 Q87JT1 Q87JT1_VIBPA VPA0167 3246 16-110,446-720 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 000140908 e2xe4A1 002994162 Q87JT1_nD1 Q87JT1 Q87JT1_VIBPA VPA0167 3246 111-445 f a.4 5 5.1 5.1.4 beta duplicates or obligate multimers beta-propeller-like beta-propeller 7-bladed 002710107 e7ne7A1 002994163 Q87S51_nD4 Q87S51 PPK1_VIBPA VP0573 ppk Polyphosphate kinase 573 501-695 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000117206 e1xdoB4 002994164 Q87S51_nD3 Q87S51 PPK1_VIBPA VP0573 ppk Polyphosphate kinase 573 316-500 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000117201 e1xdoB3 002994165 Q87S51_nD2 Q87S51 PPK1_VIBPA VP0573 ppk Polyphosphate kinase 573 106-315 f a.11 4114 4114.1 4114.1.1 a+b two layers PHP14-like PHP14-like PHP14-like 000066805 e1xdoB2 002994166 Q87S51_nD1 Q87S51 PPK1_VIBPA VP0573 ppk Polyphosphate kinase 573 6-105 f a.7 604 604.14 604.14.1 alpha bundles Spectrin repeat-like PPK N-terminal domain-like PPK N-terminal domain-like 000055261 e1xdpB1 002994167 Q87ND5_nD1 Q87ND5 UBIG_VIBPA VP1933 ubiG Ubiquinone biosynthesis O-methyltransferase 1933 6-235 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001886690 e5dpmA1 002994168 Q87RI1_nD1 Q87RI1 Q87RI1_VIBPA VP0813 813 1-110 f a.11 304 304.5 304.5.1 a+b two layers Alpha-beta plaits GlnB-like GlnB-like 002802079 e7p50A1 002994169 Q87IM4_nD1 Q87IM4 Q87IM4_VIBPA VPA0582 DNA polymerase III subunit epsilon 3661 6-70 f a.10 3294 3294.1 3294.1.1 alpha complex topology FAS type I helical domain FAS type I helical domain FAS type I helical domain 002543262 e6u5vA5 002994170 Q87PV4_nD1 Q87PV4 Q87PV4_VIBPA VP1397 GUN4 domain-containing protein 1397 16-155 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001889998 e5d08A3 002994171 Q87QQ6_nD1 Q87QQ6 Q87QQ6_VIBPA VP1093 1093 1-150 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001066304 e3zplE1 002994172 Q87IC5_nD3 Q87IC5 Q87IC5_VIBPA VPA0681 Deca-heme c-type cytochrome 3760 236-245,451-765 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001509102 e3e4bB1 002994173 Q87IC5_nD1 Q87IC5 Q87IC5_VIBPA VPA0681 Deca-heme c-type cytochrome 3760 36-225,271-445 f a.19 139 139.2 139.2.1 few secondary structure elements Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif 002576200 e6i5bA1 002994174 Q87IC5_nD2 Q87IC5 Q87IC5_VIBPA VPA0681 Deca-heme c-type cytochrome 3760 246-270 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001878827 e5ctqC1 002994175 Q87LJ4_nD1 Q87LJ4 Q87LJ4_VIBPA VP2618 2617 1-185 f a.11 4051 4051.1 4051.1.1 a+b two layers a+b domain in Capz a+b domain in Capz a+b domain in Capz 000151095 e4akrA2 002994176 Q87IQ0_nD1 Q87IQ0 Q87IQ0_VIBPA VPA0556 3635 21-260,281-470 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002542929 e6pwjB2 002994177 Q87PW8_nD2 Q87PW8 Q87PW8_VIBPA VP1382 1382 106-190,291-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002994178 Q87PW8_nD1 Q87PW8 Q87PW8_VIBPA VP1382 1382 16-105 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002994179 Q87PW8_nD3 Q87PW8 Q87PW8_VIBPA VP1382 1382 191-290 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002994180 Q87RP6_nD1 Q87RP6 YBEY_VIBPA VP0731 ybeY Endoribonuclease YbeY 731 1-150 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 000118572 e1xm5B1 002994181 Q87IQ1_nD1 Q87IQ1 Q87IQ1_VIBPA VPA0555 3634 6-50 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001830971 e5hyzA1 002994182 Q87HI9_nD3 Q87HI9 Q87HI9_VIBPA VPA0974 4053 241-295 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001762220 e3w6vA1 002994183 Q87HI9_nD1 Q87HI9 Q87HI9_VIBPA VPA0974 4053 31-190 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002080415 e5nlaA2 002994184 Q87HI9_nD2 Q87HI9 Q87HI9_VIBPA VPA0974 4053 191-240 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001602016 e3w6vA2 002994185 Q87TH5_nD3 Q87TH5 Q87TH5_VIBPA VP0094 DNA recombination protein RmuC 94 181-410 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000136487 e3hqgA1 002994186 Q87TH5_nD4 Q87TH5 Q87TH5_VIBPA VP0094 DNA recombination protein RmuC 94 411-440 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000157755 e1wwpA1 002994187 Q87TH5_nD2 Q87TH5 Q87TH5_VIBPA VP0094 DNA recombination protein RmuC 94 71-170 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 002816307 e6z26B1 002994188 Q87TH5_nD5 Q87TH5 Q87TH5_VIBPA VP0094 DNA recombination protein RmuC 94 441-470 f a.15 3409 3409.1 3409.1.1 a+b duplicates or obligate multimers Vacuolar protein sorting-associated protein 30 BARA domain Vacuolar protein sorting-associated protein 30 BARA domain Vacuolar protein sorting-associated protein 30 BARA domain 002074717 e5dfzD1 002994189 Q87TH5_nD1 Q87TH5 Q87TH5_VIBPA VP0094 DNA recombination protein RmuC 94 16-70 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002330459 e6fkfp1 002994190 Q87GA2_nD1 Q87GA2 Q87GA2_VIBPA VPA1415 4494 6-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000142261 e3qbmA1 002994191 Q87GA2_nD2 Q87GA2 Q87GA2_VIBPA VPA1415 4494 71-195 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 001111366 e4l62C2 002994192 Q87HA5_nD1 Q87HA5 Q87HA5_VIBPA VPA1060 4139 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002753385 e6wshA1 002994193 Q87HA5_nD2 Q87HA5 Q87HA5_VIBPA VPA1060 4139 136-190 f a.6 103 103.12 103.12.1 alpha arrays RuvA-C ANTAR domain ANTAR domain 002808686 e6ww6B2 002994194 Q87JZ7_nD1 Q87JZ7 Q87JZ7_VIBPA VPA0101 Transcriptional regulator 3180 1-210,241-250 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002101829 e5woqB1 002994195 Q87NK5_nD1 Q87NK5 Q87NK5_VIBPA VP1864 VOC domain-containing protein 1863 6-80 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 002456586 e6ckyB2 002994196 Q87NK5_nD2 Q87NK5 Q87NK5_VIBPA VP1864 VOC domain-containing protein 1863 81-135 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 002522039 e6p29A2 002994197 Q87QJ6_nD1 Q87QJ6 Q87QJ6_VIBPA VP1153 NAD(P)-bd_dom domain-containing protein 1153 1-275 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009037 e1gy8A1 002994198 P22848_nD1 P22848 5NTD_VIBPA VP0748 nutA 5'-nucleotidase 748 26-360 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000087627 e1ho5A2 002994199 P22848_nD2 P22848 5NTD_VIBPA VP0748 nutA 5'-nucleotidase 748 366-550 f a.14 805 805.1 805.1.1 a+b complex topology 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 000085516 e1hp1A1 002994200 Q87RE4_nD2 Q87RE4 Q87RE4_VIBPA VP0853 High-affinity zinc uptake system protein ZnuA 853 166-290 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002050361 e1k0fA2 002994201 Q87RE4_nD1 Q87RE4 Q87RE4_VIBPA VP0853 High-affinity zinc uptake system protein ZnuA 853 21-165 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002051050 e3ujpA2 002994202 Q87JV9_nD1 Q87JV9 Q87JV9_VIBPA VPA0139 3218 6-30,51-220 f a.11 512 512.1 512.1.1 a+b two layers a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 002123832 e5nj9B3 002994203 Q87JV9_nD2 Q87JV9 Q87JV9_VIBPA VPA0139 3218 226-445 f a.1 3053 3053.1 3053.1.1 beta barrels barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD 002123826 e5nj9A3 002994204 Q87M43_nD1 Q87M43 Q87M43_VIBPA VP2415 IPT/TIG domain-containing protein 2415 16-90 f a.15 283 283.2 283.2.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like gpW/gp25-like gpW/gp25-like 000223844 e3hxlA3 002994205 Q87QD0_nD2 Q87QD0 Q87QD0_VIBPA VP1219 1219 196-325 f a.19 139 139.1 139.1.1 few secondary structure elements Multiheme cytochromes Cytochrome c3-like Cytochrome c3-like 002625087 e6r2qA2 002994206 Q87QD0_nD1 Q87QD0 Q87QD0_VIBPA VP1219 1219 41-195 f a.19 139 139.2 139.2.1 few secondary structure elements Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif 000165107 e2ozyA1 002994207 Q87L87_nD1 Q87L87 Q87L87_VIBPA VP2725 Envelope stress response protein PspG 2724 46-73 f a.21 6169 6169.1 6169.1.1 extended segments Transmembrane segment of lysosome-associated membrane glycoprotein 2 Transmembrane segment of lysosome-associated membrane glycoprotein 2 Transmembrane segment of lysosome-associated membrane glycoprotein 2 002131258 e2mjoB1 002994208 Q87JY1_nD1 Q87JY1 Q87JY1_VIBPA VPA0117 Glycerate kinase 3196 46-265 f a.17 7500 7500.1 7500.1.1 a/b three-layered sandwiches Glycerate kinase I (Pfam 02595) domain II Glycerate kinase I (Pfam 02595) domain II Glycerate kinase I (Pfam 02595) domain II 001954200 e3cwcA2 002994209 Q87JY1_nD2 Q87JY1 Q87JY1_VIBPA VPA0117 Glycerate kinase 3196 1-45,271-375 f a.17 2007 2007.19 2007.19.1 a/b three-layered sandwiches Flavodoxin-like Glycerate kinase I (Pfam 02595) domain I Glycerate kinase I (Pfam 02595) domain I 001253656 e1to6B3 002994210 Q87JW3_nD1 Q87JW3 Q87JW3_VIBPA VPA0135 3214 6-245 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002994211 Q87QA6_nD1 Q87QA6 Q87QA6_VIBPA VP1244 1244 1-160 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001710397 e3breB2 002994212 Q87I78_nD1 Q87I78 Q87I78_VIBPA VPA0728 Pilus assembly protein TadE 3807 6-165 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 001260420 e1ihoB3 002994213 Q87R39_nD4 Q87R39 Q87R39_VIBPA VP0959 959 471-590 f a.14 267 267.1 267.1.1 a+b complex topology Metal cation-transporting ATPase, ATP-binding domain Metal cation-transporting ATPase, ATP-binding domain Metal cation-transporting ATPase, ATP-binding domain 001137275 e4bbjA2 002994214 Q87R39_nD3 Q87R39 Q87R39_VIBPA VP0959 959 146-255,371-430,736-760 f a.7 5073 5073.1 5073.1.2 alpha bundles Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain-related Copper efflux ATPase transmembrane domain 001324289 e4umwA4 002994215 Q87R39_nD5 Q87R39 Q87R39_VIBPA VP0959 959 431-470,591-735 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 002523992 e6jxhA3 002994216 Q87R39_nD2 Q87R39 Q87R39_VIBPA VP0959 959 256-370 f a.3 10 10.13 10.13.1 beta sandwiches jelly-roll Calcium ATPase, transduction domain A Calcium ATPase, transduction domain A 001666023 e4umvA4 002994217 Q87R39_nD1 Q87R39 Q87R39_VIBPA VP0959 959 71-135 f a.11 304 304.3 304.3.1 a+b two layers Alpha-beta plaits HMA-related HMA, heavy metal-associated domain 000159348 e1yjrA1 002994218 Q87QD9_nD1 Q87QD9 RL25_VIBPA VP1210 rplY 50S ribosomal protein L25 1210 1-90 f a.1 239 239.1 239.1.1 beta barrels Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like 000000797 e1dfuP1 002994219 Q87HP4_nD1 Q87HP4 Q87HP4_VIBPA VPA0919 3998 1-115 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002994220 Q87HP4_nD2 Q87HP4 Q87HP4_VIBPA VPA0919 3998 116-220 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002780796 e7lzaA2 002994221 Q87QD8_nD2 Q87QD8 Q87QD8_VIBPA VP1211 histidine kinase 1211 11-40,156-190 f a.7 150 150.3 150.3.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines 4-helical cytokines 4-helical cytokines 002820736 e7ny0A1 002994222 Q87QD8_nD5 Q87QD8 Q87QD8_VIBPA VP1211 histidine kinase 1211 301-449 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006560 e1id0A1 002994223 Q87QD8_nD1 Q87QD8 Q87QD8_VIBPA VP1211 histidine kinase 1211 41-155 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001890025 e5ku5A1 002994224 Q87QD8_nD3 Q87QD8 Q87QD8_VIBPA VP1211 histidine kinase 1211 191-250 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002994225 Q87QD8_nD4 Q87QD8 Q87QD8_VIBPA VP1211 histidine kinase 1211 251-295 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002756401 e7cchA2 002994226 Q87KV7_nD1 Q87KV7 Q87KV7_VIBPA VP2868 DUF4212 domain-containing protein 2867 6-85 f a.14 3681 3681.1 3681.1.1 a+b complex topology Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 002591507 e6j9fC9 002994227 Q87S95_nD1 Q87S95 Q87S95_VIBPA VP0529 529 1-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000420818 e3pqkE1 002994228 Q87S52_nD3 Q87S52 Q87S52_VIBPA VP0572 Exopolyphosphatase 572 311-500 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 002554780 e6pbzA3 002994229 Q87S52_nD2 Q87S52 Q87S52_VIBPA VP0572 Exopolyphosphatase 572 131-310 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000115718 e1u6zB3 002994230 Q87S52_nD1 Q87S52 Q87S52_VIBPA VP0572 Exopolyphosphatase 572 6-130 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000115713 e1u6zB2 002994231 Q87P08_nD2 Q87P08 Q87P08_VIBPA VP1710 zwf Glucose-6-phosphate 1-dehydrogenase 1710 186-490 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000006771 e1h9aA1 002994232 Q87P08_nD1 Q87P08 Q87P08_VIBPA VP1710 zwf Glucose-6-phosphate 1-dehydrogenase 1710 6-185 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000009130 e1h9aA2 002994233 Q87PT5_nD1 Q87PT5 Q87PT5_VIBPA VP1416 PI3K/PI4K domain-containing protein 1416 16-110 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002526305 e6a4cA2 002994234 Q87PT5_nD2 Q87PT5 Q87PT5_VIBPA VP1416 PI3K/PI4K domain-containing protein 1416 6-15,111-190 f a.11 7097 7097.1 7097.1.1 a+b two layers Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 Uncharacterized protein MXAN_0049 002559857 e6a4cA1 002994235 Q87R47_nD1 Q87R47 Q87R47_VIBPA VP0951 951 1-100 f a.6 101 101.1 101.1.7 alpha arrays HTH HTH Methylated DNA-protein cysteine methyltransferase-C 000135403 e2kifA1 002994236 Q87I53_nD1 Q87I53 Q87I53_VIBPA VPA0753 acidPPc domain-containing protein 3832 11-183 f a.7 180 180.1 180.1.1 alpha bundles Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase Acid phosphatase/Vanadium-dependent haloperoxidase 001295906 e4px7A1 002994237 Q87IU4_nD1 Q87IU4 Q87IU4_VIBPA VPA0512 Gate domain-containing protein 3591 16-55 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002745051 e7dslB1 002994238 Q87IU4_nD2 Q87IU4 Q87IU4_VIBPA VPA0512 Gate domain-containing protein 3591 56-75,96-275,301-454 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 000185549 e3tijA1 002994239 Q87PJ9_nD4 Q87PJ9 Q87PJ9_VIBPA VP1503 histidine kinase 1503 341-400 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002994240 Q87PJ9_nD3 Q87PJ9 Q87PJ9_VIBPA VP1503 histidine kinase 1503 51-60,206-325 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002994241 Q87PJ9_nD5 Q87PJ9 Q87PJ9_VIBPA VP1503 histidine kinase 1503 441-515 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002994242 Q87PJ9_nD2 Q87PJ9 Q87PJ9_VIBPA VP1503 histidine kinase 1503 61-205 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000170126 e3c30A1 002994243 Q87PJ9_nD6 Q87PJ9 Q87PJ9_VIBPA VP1503 histidine kinase 1503 516-670 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001681518 e4u7oA1 002994244 Q87PJ9_nD1 Q87PJ9 Q87PJ9_VIBPA VP1503 histidine kinase 1503 11-50,326-340 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002994245 Q87KH3_nD1 Q87KH3 Q87KH3_VIBPA VP3004 Probable queuosine precursor transporter 3003 11-195 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 002771801 e7nntC1 002994246 Q87HI0_nD1 Q87HI0 Q87HI0_VIBPA VPA0985 4064 6-265 f a.10 5048 5048.1 5048.1.1 alpha complex topology Aquaporin-like Aquaporin-like Aquaporin-like 002713874 e6vqrE1 002994247 Q87MZ6_nD2 Q87MZ6 Q87MZ6_VIBPA VP2080 2080 146-260,291-315 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001873963 e3lkvA2 002994248 Q87MZ6_nD1 Q87MZ6 Q87MZ6_VIBPA VP2080 2080 26-145,261-290 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001870454 e3lftA1 002994249 Q87NJ9_nD3 Q87NJ9 Q87NJ9_VIBPA VP1869 HTH-type transcriptional regulatory protein TyrR 1869 196-375 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001160040 e1ojlD4 002994250 Q87NJ9_nD4 Q87NJ9 Q87NJ9_VIBPA VP1869 HTH-type transcriptional regulatory protein TyrR 1869 376-455 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001160041 e1ojlD5 002994251 Q87NJ9_nD2 Q87NJ9 Q87NJ9_VIBPA VP1869 HTH-type transcriptional regulatory protein TyrR 1869 76-195 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001393219 e2jheB2 002994252 Q87NJ9_nD5 Q87NJ9 Q87NJ9_VIBPA VP1869 HTH-type transcriptional regulatory protein TyrR 1869 456-510 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002060244 e5m7oB4 002994253 Q87NJ9_nD1 Q87NJ9 Q87NJ9_VIBPA VP1869 HTH-type transcriptional regulatory protein TyrR 1869 1-75 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000344126 e2jheB1 002994254 Q87LG7_nD1 Q87LG7 Q87LG7_VIBPA VP2645 2644 1-145 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009783 e1em8A1 002994255 Q87FH4_nD1 Q87FH4 Q87FH4_VIBPA VPA1705 4784 1-280 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000222289 e4im7A2 002994256 Q87FH4_nD2 Q87FH4 Q87FH4_VIBPA VPA1705 4784 286-488 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 000222288 e4im7A1 002994257 Q87GU7_nD1 Q87GU7 Q87GU7_VIBPA VPA1218 4297 41-80,196-230 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002994258 Q87GU7_nD2 Q87GU7 Q87GU7_VIBPA VPA1218 4297 101-170 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001763675 e5c22A2 002994259 Q87GU7_nD4 Q87GU7 Q87GU7_VIBPA VPA1218 4297 6-40,231-345 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001313622 e4tkoB1 002994260 Q87GU7_nD3 Q87GU7 Q87GU7_VIBPA VPA1218 4297 81-100,171-195 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002154538 e5xu0B1 002994261 Q87GE8_nD1 Q87GE8 Q87GE8_VIBPA VPA1368 EscI/YscI/HrpB family type III secretion system inner rod protein 4447 16-85 f a.7 192 192.29 192.29.1 alpha bundles Long alpha-hairpin bMERB domain (bivalent Mical/EHBP Rab binding) bMERB domain (bivalent Mical/EHBP Rab binding) 001883384 e5szjB2 002994262 Q87GN7_nD1 Q87GN7 Q87GN7_VIBPA VPA1278 Glycine zipper family protein 4357 26-50,106-125 f a.11 3513 3513.1 3513.1.1 a+b two layers Putative lipoprotein LppA Putative lipoprotein LppA Putative lipoprotein LppA 000184922 e2v7sA1 002994263 Q87TB9_nD5 Q87TB9 Q87TB9_VIBPA VP0151 Zn_protease domain-containing protein 151 491-620 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000017 e2pmaA1 002994264 Q87TB9_nD2 Q87TB9 Q87TB9_VIBPA VP0151 Zn_protease domain-containing protein 151 36-85,121-215 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000017 e2pmaA1 002994265 Q87TB9_nD1 Q87TB9 Q87TB9_VIBPA VP0151 Zn_protease domain-containing protein 151 86-120 f a.11 4326 4326.1 4326.1.1 a+b two layers ERH-like ERH-like ERH-like 002579422 e6s2wB1 002994266 Q87TB9_nD4 Q87TB9 Q87TB9_VIBPA VP0151 Zn_protease domain-containing protein 151 356-485 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 002757010 e7o0gA2 002994267 Q87TB9_nD3 Q87TB9 Q87TB9_VIBPA VP0151 Zn_protease domain-containing protein 151 216-355 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000017 e2pmaA1 002994268 Q87RA0_nD1 Q87RA0 Q87RA0_VIBPA VP0897 Ketoacyl_synth_N domain-containing protein 897 6-190 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002466955 e6qspB1 002994269 Q87IU1_nD1 Q87IU1 Q87IU1_VIBPA VPA0515 CENP-V/GFA domain-containing protein 3594 6-130 f a.5 708 708.1 708.1.2 beta complex topology ETN0001 domain-like ETN0001 domain-like Mss4-like 002645133 e1xa8B1 002994270 Q87G63_nD2 Q87G63 Q87G63_VIBPA VPA1454 VWFA domain-containing protein 4533 86-295 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 001396444 e2ww8A1 002994271 Q87G63_nD1 Q87G63 Q87G63_VIBPA VPA1454 VWFA domain-containing protein 4533 11-30,56-80,301-325 f a.19 6002 6002.1 6002.1.1 few secondary structure elements Protein P16 Protein P16 Protein P16 000185973 e1w8xP1 002994272 Q87R04_nD1 Q87R04 Q87R04_VIBPA VP0994 Formate acetyltransferase 994 1-758 f a.16 2500 2500.1 2500.1.1 a/b barrels Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel Ten stranded beta/alpha barrel 002526277 e1h16A1 002994273 Q87J24_nD1 Q87J24 Q87J24_VIBPA VPA0429 Putative_PNPOx domain-containing protein 3508 6-170 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000432666 e3swjA1 002994274 Q87GR7_nD1 Q87GR7 Q87GR7_VIBPA VPA1247 PlsC domain-containing protein 4327 1-200 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001495364 e4uvmA1 002994275 Q87GR7_nD2 Q87GR7 Q87GR7_VIBPA VPA1247 PlsC domain-containing protein 4327 201-415 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002490210 e6e9nB2 002994276 Q87GR7_nD3 Q87GR7 Q87GR7_VIBPA VPA1247 PlsC domain-containing protein 4327 416-615 f a.17 7558 7558.1 7558.1.1 a/b three-layered sandwiches Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 002603310 e5kymA1 002994277 Q87P26_nD1 Q87P26 Q87P26_VIBPA VP1692 1692 51-200 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 000002413 e1z21A1 002994278 Q87JT2_nD1 Q87JT2 Q87JT2_VIBPA VPA0166 3245 16-349 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002753401 e6zhpB1 002994279 Q87J16_nD1 Q87J16 Q87J16_VIBPA VPA0439 DNA-binding protein 3518 16-115 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 002636640 e6vmeF1 002994280 Q87J16_nD2 Q87J16 Q87J16_VIBPA VPA0439 DNA-binding protein 3518 116-200 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001298616 e4pt7C1 002994281 Q87RJ5_nD1 Q87RJ5 ZIPA_VIBPA VP0799 zipA Cell division protein ZipA 799 181-315 f a.11 331 331.7 331.7.1 a+b two layers TBP-like Cell-division protein ZipA, C-terminal domain Cell-division protein ZipA, C-terminal domain 000006345 e1f46A1 002994282 Q87RP1_nD1 Q87RP1 Q87RP1_VIBPA VP0736 DUF4372 domain-containing protein 736 11-40 f a.9 4320 4320.1 4320.1.1 alpha superhelices Taf5 N-terminal domain-like Taf5 N-terminal domain-like Taf5 N-terminal domain-like 002820474 e7ktsB2 002994283 Q87SZ4_nD1 Q87SZ4 RL15_VIBPA VP0276 rplO 50S ribosomal protein L15 276 6-45,66-144 f a.17 2490 2490.3 2490.3.1 a/b three-layered sandwiches Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e 001952309 e5j8aDM1 002994284 Q87QY3_nD1 Q87QY3 Q87QY3_VIBPA VP1015 Beta-lactamase domain-containing protein 1015 86-240 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 002561345 e6kjcB1 002994285 Q87QY3_nD2 Q87QY3 Q87QY3_VIBPA VP1015 Beta-lactamase domain-containing protein 1015 26-85,241-345 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 001205043 e3vwnX5 002994286 Q87RX2_nD1 Q87RX2 DNAJ_VIBPA VP0654 dnaJ Chaperone protein DnaJ 654 1-85 f a.7 650 650.1 650.1.1 alpha bundles Chaperone J-domain Chaperone J-domain Chaperone J-domain 000162317 e2dmxA1 002994287 Q87RX2_nD2 Q87RX2 DNAJ_VIBPA VP0654 dnaJ Chaperone protein DnaJ 654 146-210 f a.19 361 361.1 361.1.1 few secondary structure elements DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain 000159051 e2cttA1 002994288 Q87RX2_nD3 Q87RX2 DNAJ_VIBPA VP0654 dnaJ Chaperone protein DnaJ 654 116-145,211-255 f a.3 67 67.1 67.1.1 beta sandwiches HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 000142459 e3agzA1 002994289 Q87RX2_nD4 Q87RX2 DNAJ_VIBPA VP0654 dnaJ Chaperone protein DnaJ 654 256-380 f a.3 67 67.1 67.1.1 beta sandwiches HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 002697087 e6jzbA3 002994290 Q87SX3_nD1 Q87SX3 Q87SX3_VIBPA VP0299 DUF3299 domain-containing protein 299 26-164 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001019410 e4hspA1 002994291 Q87IB8_nD1 Q87IB8 Q87IB8_VIBPA VPA0688 VWFA domain-containing protein 3767 101-310 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 001396444 e2ww8A1 002994292 Q87IB8_nD2 Q87IB8 Q87IB8_VIBPA VPA0688 VWFA domain-containing protein 3767 71-95,316-345 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002994293 Q87GC5_nD1 Q87GC5 Q87GC5_VIBPA VPA1392 Transcriptional regulator 4471 6-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002685 e2co5A1 002994294 Q87GC5_nD2 Q87GC5 Q87GC5_VIBPA VPA1392 Transcriptional regulator 4471 101-175 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000315449 e2ic6B1 002994295 Q87H02_nD1 Q87H02 Q87H02_VIBPA VPA1163 4242 1-300 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000092931 e1og6A1 002994296 Q87FP8_nD1 Q87FP8 SSTT_VIBPA VPA1630 sstT Serine/threonine transporter SstT 4709 6-405 f a.10 5052 5052.1 5052.1.1 alpha complex topology Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein 001887687 e5dwyB1 002994297 Q87GU8_nD1 Q87GU8 Q87GU8_VIBPA VPA1217 DUF2955 domain-containing protein 4296 11-335 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002057079 e5mg3D1 002994298 Q87Q33_nD1 Q87Q33 Q87Q33_VIBPA VP1317 1317 1-75 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002701638 e7c10A1 002994299 Q87QP0_nD1 Q87QP0 Q87QP0_VIBPA VP1109 PG_binding_1 domain-containing protein 1109 41-135 f a.6 144 144.1 144.1.1 alpha arrays PGBD-like PGBD-like PGBD-like 001904136 e5bmqA2 002994300 Q87QP0_nD2 Q87QP0 Q87QP0_VIBPA VP1109 PG_binding_1 domain-containing protein 1109 141-328 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 002771011 e7rgrB1 002994301 Q87LX1_nD3 Q87LX1 Q87LX1_VIBPA VP2487 2487 736-800 f a.3 12 12.6 12.6.1 beta sandwiches Glycosyl hydrolase domain-like Glycoside hydrolase family 127 middle domain-related Glycoside hydrolase family 127 middle domain-related 001499506 e3qdeB3 002994302 Q87LX1_nD1 Q87LX1 Q87LX1_VIBPA VP2487 2487 1-285 f a.3 12 12.3 12.3.1 beta sandwiches Glycosyl hydrolase domain-like supersandwich supersandwich 000002021 e1v7wA1 002994303 Q87LX1_nD2 Q87LX1 Q87LX1_VIBPA VP2487 2487 286-735 f a.9 109 109.2 109.2.1 alpha superhelices Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid 001498210 e1v7wA4 002994304 Q87MA3_nD1 Q87MA3 Q87MA3_VIBPA VP2354 2354 21-189 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 000010331 e2iqiA1 002994305 Q87RV9_nD1 Q87RV9 Q87RV9_VIBPA VP0667 DUF3622 domain-containing protein 667 6-60 f a.18 4325 4325.1 4325.1.1 mixed a+b and a/b YegP-like YegP-like YegP-like 002497109 e6q2zA1 002994306 Q87RV9_nD2 Q87RV9 Q87RV9_VIBPA VP0667 DUF3622 domain-containing protein 667 61-95 f a.11 807 807.1 807.1.1 a+b two layers Allophycocyanin linker chain (domain) Allophycocyanin linker chain (domain) Allophycocyanin linker chain (domain) 002147331 e5y6pdz2 002994307 Q87FT4_nD1 Q87FT4 Q87FT4_VIBPA VPA1594 serine-type D-Ala-D-Ala carboxypeptidase 4673 56-170 f a.10 4019 4019.1 4019.1.1 alpha complex topology alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins 000137547 e3a3jA2 002994308 Q87FT4_nD2 Q87FT4 Q87FT4_VIBPA VPA1594 serine-type D-Ala-D-Ala carboxypeptidase 4673 26-55,171-275 f a.12 223 223.3 223.3.1 a+b three layers Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins 000137548 e3a3jA3 002994309 Q87FT4_nD3 Q87FT4 Q87FT4_VIBPA VPA1594 serine-type D-Ala-D-Ala carboxypeptidase 4673 276-380 f a.3 51 51.1 51.1.1 beta sandwiches Penicillin-binding protein associated domain Penicillin-binding protein associated domain Penicillin-binding protein associated domain 000149457 e4drtA1 002994310 Q87QN8_nD1 Q87QN8 Q87QN8_VIBPA VP1111 1111 31-70 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 000119208 e2kgoA1 002994311 Q87NX9_nD1 Q87NX9 Q87NX9_VIBPA VP1739 Chromosome partitioning protein ParA 1739 51-150 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002321117 e6gapA2 002994312 Q87NX9_nD2 Q87NX9 Q87NX9_VIBPA VP1739 Chromosome partitioning protein ParA 1739 151-244 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002137468 e5nenB1 002994313 Q87GA9_nD2 Q87GA9 Q87GA9_VIBPA VPA1408 4487 156-345 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001870463 e4qlbD2 002994314 Q87GA9_nD1 Q87GA9 Q87GA9_VIBPA VPA1408 4487 1-155 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002994315 Q87M97_nD1 Q87M97 Q87M97_VIBPA VP2360 Lon N-terminal domain-containing protein 2360 1-198 f a.1 1 1.1 1.1.9 beta barrels cradle loop barrel RIFT-related PUA domain 002762332 e7lpsE2 002994316 Q87LY1_nD1 Q87LY1 RSMC_VIBPA VP2477 rsmC Ribosomal RNA small subunit methyltransferase C 2477 6-150 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001148153 e2pjdA1 002994317 Q87LY1_nD2 Q87LY1 RSMC_VIBPA VP2477 rsmC Ribosomal RNA small subunit methyltransferase C 2477 151-340 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001148154 e2pjdA2 002994318 Q87Q01_nD1 Q87Q01 Q87Q01_VIBPA VP1349 1349 6-155 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 002071899 e2ei2A1 002994319 Q87Q01_nD2 Q87Q01 Q87Q01_VIBPA VP1349 1349 161-215 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160777 e1t47A8 002994320 Q87Q01_nD3 Q87Q01 Q87Q01_VIBPA VP1349 1349 216-350 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000069011 e1cjxB4 002994321 Q87IT4_nD1 Q87IT4 Q87IT4_VIBPA VPA0521 Imm30 domain-containing protein 3601 1-110 f a.12 296 296.1 296.1.1 a+b three layers Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 001148466 e3mm5A5 002994322 Q87MP2_nD1 Q87MP2 ACCD1_VIBPA VP2189 accD1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 1 2189 26-290 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000011409 e2f9yB1 002994323 Q87PB2_nD1 Q87PB2 Q87PB2_VIBPA VP1605 WD40 repeat protein 1605 41-135 f a.1 9 9.16 9.16.1 beta barrels Lipocalins/Streptavidin Hypothetical protein Atu4866 Hypothetical protein Atu4866 000868783 e2m4lA1 002994324 Q87PB2_nD2 Q87PB2 Q87PB2_VIBPA VP1605 WD40 repeat protein 1605 136-230 f a.1 9 9.23 9.23.1 beta barrels Lipocalins/Streptavidin Hypothetical protein BT_0869 Hypothetical protein BT_0869 001347551 e4qrlA1 002994325 Q56725_nD1 Q56725 NHAA_VIBPA VP1228 nhaA Na(+)/H(+) antiporter NhaA 1228 6-380 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 000355432 e3fi1A1 002994326 Q87QB1_nD1 Q87QB1 Q87QB1_VIBPA VP1239 DUF340 domain-containing protein 1239 1-300 f a.10 3236 3236.1 3236.1.1 alpha complex topology Cation-proton antiporter Cation-proton antiporter (CPA) Cation-proton antiporter (CPA) 001725977 e5bz3A1 002994327 Q87LU1_nD2 Q87LU1 Q87LU1_VIBPA VP2520 2520 76-255 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 001893733 e5tpmA1 002994328 Q87LU1_nD1 Q87LU1 Q87LU1_VIBPA VP2520 2520 1-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001346824 e4r1hA1 002994329 Q87JX1_nD1 Q87JX1 Q87JX1_VIBPA VPA0127 Cytochrome c-type protein 3206 11-175 f a.19 139 139.1 139.1.1 few secondary structure elements Multiheme cytochromes Cytochrome c3-like Cytochrome c3-like 001644188 e2vr0F1 002994330 Q87JX1_nD2 Q87JX1 Q87JX1_VIBPA VPA0127 Cytochrome c-type protein 3206 181-364 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000157981 e1yiqA2 002994331 Q87PJ1_nD1 Q87PJ1 Q87PJ1_VIBPA VP1511 1511 1-190 f a.7 629 629.1 629.1.1 alpha bundles TorD-like (Pfam 06192) TorD-like (Pfam 06192) TorD-like (Pfam 06192) 000360395 e3efpB1 002994332 Q87J10_nD1 Q87J10 Q87J10_VIBPA VPA0445 TIGR03982 family His-Xaa-Ser system protein 3524 6-100 f a.7 604 604.8 604.8.1 alpha bundles Spectrin repeat-like Smac/diablo Smac/diablo 000055177 e1g73B1 002994333 Q87HV5_nD2 Q87HV5 Q87HV5_VIBPA VPA0851 3930 306-470 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000007283 e2yzqA1 002994334 Q87HV5_nD1 Q87HV5 Q87HV5_VIBPA VPA0851 3930 6-290 f a.10 5048 5048.1 5048.1.1 alpha complex topology Aquaporin-like Aquaporin-like Aquaporin-like 000417975 e3q7kJ1 002994335 Q87PZ2_nD1 Q87PZ2 Q87PZ2_VIBPA VP1358 FUSC family protein 1358 156-270 f a.7 601 601.37 601.37.1 alpha bundles Four-helical up-and-down bundle Photosystem II lipoprotein Psb27 Photosystem II lipoprotein Psb27 002733865 e7nhp11 002994336 Q87PZ2_nD2 Q87PZ2 Q87PZ2_VIBPA VP1358 FUSC family protein 1358 6-155,291-450 f a.14 3282 3282.1 3282.1.1 a+b complex topology LidA LidA LidA 001759624 e4h5yA1 002994337 Q87GA1_nD2 Q87GA1 Q87GA1_VIBPA VPA1416 4495 126-310 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002466633 e5zxnA1 002994338 Q87GA1_nD1 Q87GA1 Q87GA1_VIBPA VPA1416 4495 6-125,311-344 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 002468312 e5zxuA2 002994339 Q87FM7_nD1 Q87FM7 Q87FM7_VIBPA VPA1652 4731 1-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001918562 e5b57C1 002994340 Q87LA3_nD1 Q87LA3 SSB_VIBPA VP2709 ssb Single-stranded DNA-binding protein 2708 6-115 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000294 e1qvcA1 002994341 Q87J58_nD1 Q87J58 Q87J58_VIBPA VPA0395 BPL/LPL catalytic domain-containing protein 3474 6-235 f a.12 314 314.1 314.1.1 a+b three layers Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases 000007030 e2p0lA1 002994342 Q87I47_nD1 Q87I47 Q87I47_VIBPA VPA0759 3838 6-160 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000114538 e2fe7B1 002994343 Q79YT5_nD1 Q79YT5 Q79YT5_VIBPA VPA1551 Flagellar secretion chaperone FliS 4630 1-125 f a.7 601 601.13 601.13.1 alpha bundles Four-helical up-and-down bundle Flagellar export chaperone FliS Flagellar export chaperone FliS 002141078 e5mawE1 002994344 Q87IH7_nD1 Q87IH7 Q87IH7_VIBPA VPA0629 Cytochrome bo(3) ubiquinol oxidase subunit 3 3708 11-200 f a.7 5039 5039.1 5039.1.1 alpha bundles Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like 002715170 e6wtiC1 002994345 Q87PW9_nD1 Q87PW9 Q87PW9_VIBPA VP1381 1381 51-95 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 001180713 e3or1B8 002994346 Q87PW9_nD2 Q87PW9 Q87PW9_VIBPA VP1381 1381 1-50,96-290 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002322646 e5v1tA1 002994347 Q87FF6_nD1 Q87FF6 Q87FF6_VIBPA VPA1723 4802 1-189 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 002439920 e6c30A1 002994348 Q87RN0_nD1 Q87RN0 KDSA_VIBPA VP0747 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase 747 1-280 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000434758 e3undB1 002994349 Q87H53_nD1 Q87H53 Q87H53_VIBPA VPA1112 betA Oxygen-dependent choline dehydrogenase 4191 6-580 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 001681683 e4yntA1 002994350 Q87PA8_nD2 Q87PA8 Q87PA8_VIBPA VP1609 1609 346-598 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002448376 e6a6mA1 002994351 Q87PA8_nD1 Q87PA8 Q87PA8_VIBPA VP1609 1609 11-345 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002462953 e5mkkA2 002994352 Q87LD6_nD1 Q87LD6 Q87LD6_VIBPA VP2676 2675 6-235 f a.11 512 512.1 512.1.1 a+b two layers a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 000070450 e1vl4B3 002994353 Q87LD6_nD2 Q87LD6 Q87LD6_VIBPA VP2676 2675 236-445 f a.1 3053 3053.1 3053.1.1 beta barrels barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD barrel domain in putative modulator of DNA gyrase, PmbA/TldD 002123831 e5nj9B2 002994354 Q87JT8_nD1 Q87JT8 Q87JT8_VIBPA VPA0160 Exported protein 3239 26-100 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001559090 e4ziqA10 002994355 Q87HC5_nD3 Q87HC5 Q87HC5_VIBPA VPA1040 OmpA-like domain-containing protein 4119 286-433 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 000216283 e3s0yA1 002994356 Q87HC5_nD1 Q87HC5 Q87HC5_VIBPA VPA1040 OmpA-like domain-containing protein 4119 51-210 f a.7 3706 3706.1 3706.1.1 alpha bundles Conserved type six secretion component TssL-related Conserved type six secretion component TssL-related Conserved type six secretion component TssL-related 002641025 e6y4rB1 002994357 Q87HC5_nD2 Q87HC5 Q87HC5_VIBPA VPA1040 OmpA-like domain-containing protein 4119 236-270 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002738112 e6bcuB3 002994358 Q87NZ8_nD1 Q87NZ8 ECTC_VIBPA VP1720 ectC L-ectoine synthase 1720 1-125 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002405047 e5onnA1 002994359 Q87GW5_nD1 Q87GW5 Q87GW5_VIBPA VPA1200 Periplasmic nitrate reductase, electron transfer subunit 4279 51-145 f a.19 139 139.2 139.2.1 few secondary structure elements Multiheme cytochromes Di-heme elbow motif Di-heme elbow motif 000008641 e1jniA1 002994360 Q87KN9_nD2 Q87KN9 BTUB_VIBPA VP2938 btuB Vitamin B12 transporter BtuB 2937 156-350,371-624 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001906223 e4zgvB2 002994361 Q87KN9_nD1 Q87KN9 BTUB_VIBPA VP2938 btuB Vitamin B12 transporter BtuB 2937 26-155 f a.14 3070 3070.2 3070.2.1 a+b complex topology N0 domain in phage tail proteins and secretins-like TonB-dependent receptor plug domain TonB-dependent receptor plug domain 001716663 e2gufA1 002994362 Q87LJ8_nD1 Q87LJ8 Q87LJ8_VIBPA VP2614 2613 1-350 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002554619 e6ojzD1 002994363 Q87G41_nD1 Q87G41 Q87G41_VIBPA VPA1476 IS1 family transposase 4555 81-130 f a.19 375 375.1 375.1.4 few secondary structure elements Rubredoxin-like Rubredoxin-related Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 000008046 e1pg5B2 002994364 Q87G41_nD2 Q87G41 Q87G41_VIBPA VPA1476 IS1 family transposase 4555 6-80,131-485 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000215919 e4dm0A1 002994365 Q87SN9_nD2 Q87SN9 Q87SN9_VIBPA VP0383 Transcriptional regulator, AbiEi antitoxin, Type IV TA system 383 76-170 f a.12 316 316.2 316.2.1 a+b three layers Nucleotidyltransferase-like Rv2827c C-terminal domain-like Rv2827c C-terminal domain-like 000078176 e1zelB2 002994366 Q87SN9_nD1 Q87SN9 Q87SN9_VIBPA VP0383 Transcriptional regulator, AbiEi antitoxin, Type IV TA system 383 6-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002623825 e6l0oA1 002994367 Q87KC3_nD1 Q87KC3 Q87KC3_VIBPA VP3054 Thiol:disulfide interchange protein 3053 26-200 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002797418 e7luhA1 002994368 Q87QF4_nD1 Q87QF4 Q87QF4_VIBPA VP1195 1195 6-555 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701878 e7cagA1 002994369 Q87SL4_nD1 Q87SL4 Q87SL4_VIBPA VP0409 409 1-270 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001558894 e4uhcA1 002994370 Q87KD2_nD3 Q87KD2 Q87KD2_VIBPA VP3045 Trk system potassium uptake protein TrkA 3044 231-360 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000230387 e4g65A5 002994371 Q87KD2_nD4 Q87KD2 Q87KD2_VIBPA VP3045 Trk system potassium uptake protein TrkA 3044 366-455 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 000219204 e4g65A4 002994372 Q87KD2_nD2 Q87KD2 Q87KD2_VIBPA VP3045 Trk system potassium uptake protein TrkA 3044 141-225 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 000151889 e4g65A3 002994373 Q87KD2_nD1 Q87KD2 Q87KD2_VIBPA VP3045 Trk system potassium uptake protein TrkA 3044 1-125 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000151887 e4g65A1 002994374 Q87HF0_nD2 Q87HF0 Q87HF0_VIBPA VPA1015 4094 261-330 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001513383 e3cdxA3 002994375 Q87HF0_nD1 Q87HF0 Q87HF0_VIBPA VPA1015 4094 6-260 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 001268611 e3cdxA2 002994376 Q87QB0_nD1 Q87QB0 Q87QB0_VIBPA VP1240 HDOD domain-containing protein 1240 26-305 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000135721 e3i7aA1 002994377 Q87GW3_nD1 Q87GW3 Q87GW3_VIBPA VPA1202 4281 36-170 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002832654 e7dluA2 002994378 Q87GW3_nD2 Q87GW3 Q87GW3_VIBPA VPA1202 4281 171-585 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001893017 e5t6oA1 002994379 Q87G85_nD1 Q87G85 Q87G85_VIBPA VPA1432 4511 1-120 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002994380 Q87G85_nD2 Q87G85 Q87G85_VIBPA VPA1432 4511 126-225 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001148332 e4knyB4 002994381 Q87IC4_nD3 Q87IC4 Q87IC4_VIBPA VPA0682 3761 151-250 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002732887 e6m5fD1 002994382 Q87IC4_nD1 Q87IC4 Q87IC4_VIBPA VPA0682 3761 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002994383 Q87IC4_nD2 Q87IC4 Q87IC4_VIBPA VPA0682 3761 86-150,251-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549389 e4y0mB1 002994384 Q87JW7_nD1 Q87JW7 THIM_VIBPA VPA0131 thiM Hydroxyethylthiazole kinase 3210 1-263 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000135241 e3hpdA1 002994385 Q87N44_nD1 Q87N44 KCY_VIBPA VP2031 cmk Cytidylate kinase 2031 6-225 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000161353 e2h92A1 002994386 Q87J32_nD1 Q87J32 HMUV_VIBPA VPA0421 hmuV Hemin import ATP-binding protein HmuV 3500 1-255 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001918562 e5b57C1 002994387 Q87QZ3_nD2 Q87QZ3 Q87QZ3_VIBPA VP1005 1005 106-180 f a.7 192 192.8 192.8.1 alpha bundles Long alpha-hairpin Eukaryotic DNA topoisomerase I, dispensable insert domain Eukaryotic DNA topoisomerase I, dispensable insert domain 000004675 e1k4tA5 002994388 Q87QZ3_nD1 Q87QZ3 Q87QZ3_VIBPA VP1005 1005 1-95 f a.7 632 632.16 632.16.1 alpha bundles immunoglobulin/albumin-binding domain-like N-terminal domain of a replication restart primosome factor PriC N-terminal domain of a replication restart primosome factor PriC 001088826 e2rt6A1 002994389 Q87R99_nD1 Q87R99 Q87R99_VIBPA VP0898 898 26-130 f a.11 331 331.4 331.4.1 a+b two layers TBP-like Kinase associated domain 1, KA1 Kinase associated domain 1, KA1 000006339 e2qlvA1 002994390 Q87JK1_nD1 Q87JK1 Q87JK1_VIBPA VPA0248 3327 21-185 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000000879 e1p4tA1 002994391 Q87JK1_nD2 Q87JK1 Q87JK1_VIBPA VPA0248 3327 201-320 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002994392 Q87LS0_nD1 Q87LS0 Q87LS0_VIBPA VP2541 DedA family protein 2541 21-80,116-153 f a.8 3896 3896.1 3896.1.1 alpha duplicates or obligate multimers Intramembrane CDP-DAG synthetase-related Intramembrane CDP-DAG synthetase-related Intramembrane CDP-DAG synthetase 001318717 e4q2gB1 002994393 Q87II4_nD1 Q87II4 Q87II4_VIBPA VPA0622 3701 6-115 f a.6 4033 4033.1 4033.1.1 alpha arrays Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like 002507446 e6ijcB3 002994394 Q87II4_nD2 Q87II4 Q87II4_VIBPA VPA0622 3701 116-235 f a.5 4052 4052.1 4052.1.1 beta complex topology Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like 000405131 e3pfdB1 002994395 Q87II4_nD3 Q87II4 Q87II4_VIBPA VPA0622 3701 236-384 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 002062663 e5ez3B4 002994396 P22098_nD2 P22098 TRPC_VIBPA VP1959 trpC Tryptophan biosynthesis protein TrpCF 1959 281-480 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008963 e1piiA1 002994397 P22098_nD1 P22098 TRPC_VIBPA VP1959 trpC Tryptophan biosynthesis protein TrpCF 1959 26-280 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008965 e1piiA2 002994398 Q87G65_nD3 Q87G65 Q87G65_VIBPA VPA1452 DUF58 domain-containing protein 4531 241-275 f 002994399 Q87G65_nD2 Q87G65 Q87G65_VIBPA VPA1452 DUF58 domain-containing protein 4531 6-45,91-308 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 002765462 e7o4j42 002994400 Q87G65_nD1 Q87G65 Q87G65_VIBPA VPA1452 DUF58 domain-containing protein 4531 56-90 f a.9 109 109.16 109.16.1 alpha superhelices Repetitive alpha hairpins TROVE domain-like TROVE domain-like 000163835 e2nvoA2 002994401 Q87FW8_nD1 Q87FW8 Q87FW8_VIBPA VPA1560 TIGR02450 family Trp-rich protein 4639 1-70 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002140843 e6bogA4 002994402 Q87TM9_nD1 Q87TM9 Q87TM9_VIBPA VP0040 40 6-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000162645 e2f07A1 002994403 Q87TM9_nD2 Q87TM9 Q87TM9_VIBPA VP0040 40 71-193 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000367058 e3he0B2 002994404 Q87HU0_nD1 Q87HU0 Q87HU0_VIBPA VPA0866 3945 1-279 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000400637 e3on7B1 002994405 Q87Q93_nD2 Q87Q93 Q87Q93_VIBPA VP1257 1257 46-210 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000407731 e3ab8A2 002994406 Q87Q93_nD1 Q87Q93 Q87Q93_VIBPA VP1257 1257 16-45 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001901109 e4g07A2 002994407 Q87MZ1_nD1 Q87MZ1 Q87MZ1_VIBPA VP2085 Copper-binding protein 2085 26-140 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002793482 e7dm0B1 002994408 Q87JT7_nD1 Q87JT7 Q87JT7_VIBPA VPA0161 DUF4830 domain-containing protein 3240 11-35 f a.21 5010 5010.1 5010.1.1 extended segments Bacterial aa3 type cytochrome c oxidase subunit IV Bacterial aa3 type cytochrome c oxidase subunit IV Bacterial aa3 type cytochrome c oxidase subunit IV 000061020 e1m56J1 002994409 Q87JT7_nD2 Q87JT7 Q87JT7_VIBPA VPA0161 DUF4830 domain-containing protein 3240 56-170 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000196948 e2opdA1 002994410 Q87MC0_nD1 Q87MC0 Q87MC0_VIBPA VP2336 DUF4250 domain-containing protein 2336 6-63 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001160042 e1ojlD6 002994411 Q87SU4_nD1 Q87SU4 RL21_VIBPA VP0328 rplU 50S ribosomal protein L21 328 1-70,91-103 f a.1 4186 4186.1 4186.1.1 beta barrels Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p 002826861 e7rygQ1 002994412 Q87JA4_nD1 Q87JA4 Q87JA4_VIBPA VPA0349 HAD family hydrolase 3428 1-219 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000170261 e3fvvA1 002994413 Q87KN3_nD1 Q87KN3 Q87KN3_VIBPA VP2944 2943 26-280 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000009416 e2uyoA1 002994414 Q87J03_nD1 Q87J03 Q87J03_VIBPA VPA0452 3531 11-184 f a.7 5069 5069.1 5069.1.1 alpha bundles Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes 002388407 e5oc0A1 002994415 Q87TL3_nD2 Q87TL3 Q87TL3_VIBPA VP0056 Chromosome partitioning protein ParA 56 186-350 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001734923 e5dl5A1 002994416 Q87TL3_nD1 Q87TL3 Q87TL3_VIBPA VP0056 Chromosome partitioning protein ParA 56 36-185 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002474087 e6hifg1 002994417 Q87TL3_nD3 Q87TL3 Q87TL3_VIBPA VP0056 Chromosome partitioning protein ParA 56 351-490 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 002408019 e5yvfA1 002994418 Q87I69_nD2 Q87I69 Q87I69_VIBPA VPA0737 3816 131-388 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002994419 Q87I69_nD1 Q87I69 Q87I69_VIBPA VPA0737 3816 1-130 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000986253 e3sy8B2 002994420 Q87NS2_nD1 Q87NS2 Q87NS2_VIBPA VP1796 N-glycosylase/DNA lyase 1796 12-280 f a.6 102 102.1 102.1.2 alpha arrays HhH/H2TH SAM/DNA-glycosylase DNA-glycosylase 000003033 e1xg7A1 002994421 P40607_nD1 P40607 PURA_VIBPA VP2812 purA Adenylosuccinate synthetase 2811 1-438 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002771296 e6zxqA1 002994422 Q87MI0_nD1 Q87MI0 Q87MI0_VIBPA VP2275 Thioredoxin peroxidase 2275 1-155 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000138642 e3ixrA1 002994423 Q87QU3_nD1 Q87QU3 Q87QU3_VIBPA VP1056 4HBT domain-containing protein 1056 1-135 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 001885162 e5t07A1 002994424 Q87R11_nD1 Q87R11 Q87R11_VIBPA VP0988 AAA_PrkA domain-containing protein 988 16-330 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002543024 e6sfwP2 002994425 Q87R11_nD2 Q87R11 Q87R11_VIBPA VP0988 AAA_PrkA domain-containing protein 988 331-485 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002085424 e5nugB4 002994426 Q87R11_nD3 Q87R11 Q87R11_VIBPA VP0988 AAA_PrkA domain-containing protein 988 496-590 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002035686 e1tr2B6 002994427 Q87R11_nD4 Q87R11 Q87R11_VIBPA VP0988 AAA_PrkA domain-containing protein 988 486-495,596-635 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002547979 e6qdjA1 002994428 Q87TG4_nD1 Q87TG4 Q87TG4_VIBPA VP0105 N-acetyltransferase domain-containing protein 105 1-140 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001291869 e4hnyD1 002994429 Q87PX7_nD1 Q87PX7 Q87PX7_VIBPA VP1373 1373 1-155 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011098 e2fiwA1 002994430 Q87TQ1_nD1 Q87TQ1 Q87TQ1_VIBPA VP0018 18 16-135 f a.3 319 319.1 319.1.1 beta sandwiches HSP20-like HSP20-like chaperones HSP20-like chaperones 000001050 e1gmeA1 002994431 Q87H47_nD1 Q87H47 Q87H47_VIBPA VPA1118 3-hydroxyisobutyrate dehydrogenase 4197 1-165 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002651217 e6sm7C1 002994432 Q87H47_nD2 Q87H47 Q87H47_VIBPA VPA1118 3-hydroxyisobutyrate dehydrogenase 4197 166-295 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 001901143 e2gf2A1 002994433 Q87HJ8_nD4 Q87HJ8 Q87HJ8_VIBPA VPA0965 4044 366-500 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001095401 e4gt8A1 002994434 Q87HJ8_nD3 Q87HJ8 Q87HJ8_VIBPA VPA0965 4044 276-360 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001934909 e5iujE2 002994435 Q87HJ8_nD2 Q87HJ8 Q87HJ8_VIBPA VPA0965 4044 181-275 f a.9 109 109.3 109.3.1 alpha superhelices Repetitive alpha hairpins Ankyrin repeat Ankyrin repeat 002818710 e7rdrC2 002994436 Q87HJ8_nD1 Q87HJ8 Q87HJ8_VIBPA VPA0965 4044 6-160 f a.7 604 604.39 604.39.1 alpha bundles Spectrin repeat-like S-component of energy-coupling factor (ECF) transporters S-component of energy-coupling factor (ECF) transporters 002486065 e4hzuS1 002994437 Q87MY2_nD1 Q87MY2 MOAC_VIBPA VP2094 moaC Cyclic pyranopterin monophosphate synthase 2094 1-159 f a.11 304 304.42 304.42.1 a+b two layers Alpha-beta plaits Molybdenum cofactor biosynthesis protein C, MoaC Molybdenum cofactor biosynthesis protein C, MoaC 001549171 e4pydC1 002994438 Q87J71_nD1 Q87J71 Q87J71_VIBPA VPA0382 3461 1-250 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000096929 e1geeB1 002994439 Q87JC8_nD1 Q87JC8 Q87JC8_VIBPA VPA0325 APH domain-containing protein 3404 6-285 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 002327098 e5yjzA1 002994440 Q87FQ9_nD2 Q87FQ9 Q87FQ9_VIBPA VPA1619 4-alpha-glucanotransferase 4698 6-60,161-720 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001569466 e4s3pA1 002994441 Q87FQ9_nD1 Q87FQ9 Q87FQ9_VIBPA VPA1619 4-alpha-glucanotransferase 4698 61-160 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001870474 e5b68A2 002994442 Q87SG9_nD3 Q87SG9 MURE_VIBPA VP0455 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 455 336-490 f a.17 7570 7570.1 7570.1.1 a/b three-layered sandwiches MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain 000110185 e1e8cB2 002994443 Q87SG9_nD1 Q87SG9 MURE_VIBPA VP0455 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 455 6-105 f a.17 2493 2493.1 2493.1.1 a/b three-layered sandwiches MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like 000118041 e1e8cB3 002994444 Q87SG9_nD2 Q87SG9 MURE_VIBPA VP0455 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 455 106-335 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000103008 e1e8cB1 002994445 Q87J85_nD2 Q87J85 SYY1_VIBPA VPA0368 tyrS1 Tyrosine--tRNA ligase 1 3447 326-419 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 002474071 e6hb5B1 002994446 Q87J85_nD1 Q87J85 SYY1_VIBPA VPA0368 tyrS1 Tyrosine--tRNA ligase 1 3447 6-325 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002482423 e6otjB2 002994447 Q87RB9_nD1 Q87RB9 Q87RB9_VIBPA VP0878 Nucleoside permease 878 1-399 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 002060801 e5l26B1 002994448 Q87QT2_nD2 Q87QT2 Q87QT2_VIBPA VP1067 GSP_synth domain-containing protein 1067 171-265 f a.17 2003 2003.1 2003.1.10 a/b three-layered sandwiches Rossmann-like Rossmann-related PreATP-grasp domain 001228349 e2vpsA5 002994449 Q87QT2_nD1 Q87QT2 Q87QT2_VIBPA VP1067 GSP_synth domain-containing protein 1067 1-170,266-388 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000080790 e2io8B1 002994450 Q87J42_nD1 Q87J42 Q87J42_VIBPA VPA0411 Flavodoxin 3490 6-275 f a.5 4161 4161.1 4161.1.1 beta complex topology MOSC N-terminal domain-like MOSC N-terminal domain-like MOSC N-terminal domain-like 002818420 e7p41D2 002994451 Q87J42_nD2 Q87J42 Q87J42_VIBPA VPA0411 Flavodoxin 3490 276-380 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000149634 e4eh1A1 002994452 Q87J42_nD4 Q87J42 Q87J42_VIBPA VPA0411 Flavodoxin 3490 511-605 f a.11 221 221.1 221.1.1 a+b two layers beta-Grasp Ubiquitin-related Ubiquitin-like 002389025 e5ogxA2 002994453 Q87J42_nD3 Q87J42 Q87J42_VIBPA VPA0411 Flavodoxin 3490 386-510 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 001447935 e4p6vF3 002994454 Q87JZ5_nD1 Q87JZ5 Y4103_VIBPA VPA0103 Macro domain-containing protein VPA0103 3182 1-170 f a.17 7529 7529.1 7529.1.1 a/b three-layered sandwiches Macro domain-like Macro domain-like Macro domain-like 001700094 e5cb5P1 002994455 Q87TQ5_nD1 Q87TQ5 RECF_VIBPA VP0013 recF DNA replication and repair protein RecF 13 1-359 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001148095 e2o5vA1 002994456 Q87GK0_nD1 Q87GK0 Q87GK0_VIBPA VPA1316 4395 26-105 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000002478 e2ezlA1 002994457 Q87GK0_nD2 Q87GK0 Q87GK0_VIBPA VPA1316 4395 111-280 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000215919 e4dm0A1 002994458 Q87LK8_nD1 Q87LK8 TKT1_VIBPA VP2605 tkt1 Transketolase 1 2604 1-330 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 000111034 e1itzB3 002994459 Q87LK8_nD2 Q87LK8 TKT1_VIBPA VP2605 tkt1 Transketolase 1 2604 331-525 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 000110820 e1qgdB2 002994460 Q87LK8_nD3 Q87LK8 TKT1_VIBPA VP2605 tkt1 Transketolase 1 2604 526-664 f a.17 7522 7522.1 7522.1.1 a/b three-layered sandwiches TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like 002635044 e6tj8A1 002994461 Q87LL0_nD2 Q87LL0 E4PD_VIBPA VP2601 epd D-erythrose-4-phosphate dehydrogenase 2600 156-325 f a.11 298 298.1 298.1.1 a+b two layers FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 000077213 e1rm5A1 002994462 Q87LL0_nD1 Q87LL0 E4PD_VIBPA VP2601 epd D-erythrose-4-phosphate dehydrogenase 2600 1-155,326-340 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000413184 e2x5kP2 002994463 Q87P70_nD1 Q87P70 Q87P70_VIBPA VP1648 prpB 2-methylisocitrate lyase 1648 1-298 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002756475 e7ebeA1 002994464 Q87IY0_nD2 Q87IY0 Q87IY0_VIBPA VPA0476 GGDEF domain-containing protein 3555 186-345 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002775387 e6zxbA1 002994465 Q87IY0_nD1 Q87IY0 Q87IY0_VIBPA VPA0476 GGDEF domain-containing protein 3555 21-185 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000144753 e3trcA1 002994466 Q87PB0_nD1 Q87PB0 PROQ_VIBPA VP1607 proQ RNA chaperone ProQ 1607 6-125 f a.6 505 505.1 505.1.1 alpha arrays Repressor of bacterial conjugation FinO Repressor of bacterial conjugation FinO Repressor of bacterial conjugation FinO 000003220 e1dvoA1 002994467 Q87PB0_nD2 Q87PB0 PROQ_VIBPA VP1607 proQ RNA chaperone ProQ 1607 161-209 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001868762 e5kchA3 002994468 Q87HR5_nD2 Q87HR5 Q87HR5_VIBPA VPA0891 DUF3336 domain-containing protein 3970 111-270 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 000423418 e3am6B1 002994469 Q87HR5_nD1 Q87HR5 Q87HR5_VIBPA VPA0891 DUF3336 domain-containing protein 3970 6-90 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 001722662 e5fd9A1 002994470 Q87HR5_nD3 Q87HR5 Q87HR5_VIBPA VPA0891 DUF3336 domain-containing protein 3970 321-349 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 002163602 e5ys9A3 002994471 Q87RZ4_nD1 Q87RZ4 Q87RZ4_VIBPA VP0630 630 6-340 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002485135 e6gwiB1 002994472 Q87RZ4_nD2 Q87RZ4 Q87RZ4_VIBPA VP0630 630 341-440 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002430525 e6fyqA2 002994473 Q87S75_nD1 Q87S75 Q87S75_VIBPA VP0549 Cyclic diguanosine monophosphate-binding protein 549 6-115 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 000142349 e2l74A1 002994474 O87081_nD2 O87081 FLAF_VIBPA VP2261 flaF Polar flagellin F 2261 176-275 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002559772 e6iwyA3 002994475 O87081_nD1 O87081 FLAF_VIBPA VP2261 flaF Polar flagellin F 2261 11-175,276-365 f a.7 601 601.51 601.51.1 alpha bundles Four-helical up-and-down bundle alpha-helical domain in phase 1 flagellin alpha-helical domain in phase 1 flagellin 002717224 e6xl0T1 002994476 Q87JQ6_nD1 Q87JQ6 TNAA_VIBPA VPA0192 tnaA Tryptophanase 3271 1-465 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001152429 e1ax4C3 002994477 Q87L96_nD2 Q87L96 Q87L96_VIBPA VP2715 Aspartokinase 2714 306-385 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000064899 e2cdqB1 002994478 Q87L96_nD1 Q87L96 Q87L96_VIBPA VP2715 Aspartokinase 2714 1-305 f a.17 7531 7531.1 7531.1.1 a/b three-layered sandwiches Carbamate kinase-like Carbamate kinase-like Carbamate kinase-like 000010510 e2j0wA3 002994479 Q87L96_nD3 Q87L96 Q87L96_VIBPA VP2715 Aspartokinase 2714 386-450 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001190370 e3c1mC6 002994480 Q87TA6_nD1 Q87TA6 Q87TA6_VIBPA VP0164 164 46-130 f a.18 2484 2484.6 2484.6.1 mixed a+b and a/b Ribonuclease H-like Periplasmic domain of ExbD/TolR Periplasmic domain of ExbD/TolR 001685126 e5by4A1 002994481 Q87KF9_nD1 Q87KF9 Q87KF9_VIBPA VP3018 FliG_C domain-containing protein 3017 6-65 f a.8 559 559.1 559.1.1 alpha duplicates or obligate multimers H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain 001141768 e1ov9B1 002994482 Q87KF9_nD2 Q87KF9 Q87KF9_VIBPA VP3018 FliG_C domain-containing protein 3017 66-90 f a.8 559 559.1 559.1.1 alpha duplicates or obligate multimers H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain H-NS histone-like proteins, N-terminal domain 001031076 e3nr7A1 002994483 Q87R14_nD1 Q87R14 KDSB_VIBPA VP0984 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase 984 1-250 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 000140736 e3oamA1 002994484 Q87MQ0_nD2 Q87MQ0 Q87MQ0_VIBPA VP2181 Inner membrane protein 2181 76-120 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 000184906 e2rddB1 002994485 Q87MQ0_nD1 Q87MQ0 Q87MQ0_VIBPA VP2181 Inner membrane protein 2181 31-75 f a.21 5034 5034.1 5034.1.1 extended segments Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK 001699796 e4rvyK1 002994486 Q87RK1_nD1 Q87RK1 Q87RK1_VIBPA VP0793 793 16-169 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 000085243 e1glbF1 002994487 Q87TG8_nD1 Q87TG8 Q87TG8_VIBPA VP0101 Nucleic acid-binding protein 101 6-38 f a.19 375 375.1 375.1.2 few secondary structure elements Rubredoxin-like Rubredoxin-related Desulforedoxin 000089102 e1dxgA1 002994488 Q87KW4_nD1 Q87KW4 Q87KW4_VIBPA VP2861 trmL tRNA (cytidine(34)-2'-O)-methyltransferase 2860 1-155 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 002832001 e7e3qA1 002994489 Q87QX4_nD1 Q87QX4 Q87QX4_VIBPA VP1025 1025 6-125,146-265 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001698348 e5dj5B1 002994490 Q87RA5_nD3 Q87RA5 Q87RA5_VIBPA VP0892 892 346-455 f a.11 327 327.5 327.5.1 a+b two layers Alpha-lytic protease prodomain-like a+b domain in acetyl-CoA synthetase-like proteins a+b domain in acetyl-CoA synthetase-like proteins 002148237 e5u29C2 002994491 Q87RA5_nD2 Q87RA5 Q87RA5_VIBPA VP0892 892 136-345 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002073986 e5u89A1 002994492 Q87RA5_nD1 Q87RA5 Q87RA5_VIBPA VP0892 892 1-150 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002073989 e5u89A4 002994493 Q87M36_nD1 Q87M36 Q87M36_VIBPA VP2422 Peptidase_A24 domain-containing protein 2422 1-115,146-160 f a.7 3457 3457.1 3457.1.1 alpha bundles GxGD membrane protease GxGD membrane protease GxGD membrane protease 000185516 e3s0xA1 002994494 Q87J41_nD1 Q87J41 NADE_VIBPA VPA0412 nadE NH(3)-dependent NAD(+) synthetase 3491 1-275 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000103332 e1kqpB1 002994495 Q87G81_nD1 Q87G81 Q87G81_VIBPA VPA1436 4515 1-260 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001918562 e5b57C1 002994496 Q56705_nD3 Q56705 FLIDP_VIBPA VP2256 fliDP Polar flagellar hook-associated protein 2 2256 71-105,436-485 f a.3 3943 3943.1 3943.1.1 beta sandwiches Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains 001910310 e5fhyB1 002994497 Q56705_nD4 Q56705 FLIDP_VIBPA VP2256 fliDP Polar flagellar hook-associated protein 2 2256 206-225,321-370,396-425 f a.7 601 601.1 601.1.2 alpha bundles Four-helical up-and-down bundle alpha-catenin-related I/LWEQ domain (Pfam 01608) 000003709 e1u89A1 002994498 Q56705_nD2 Q56705 FLIDP_VIBPA VP2256 fliDP Polar flagellar hook-associated protein 2 2256 271-295 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 001276367 e2zr3A3 002994499 Q56705_nD5 Q56705 FLIDP_VIBPA VP2256 fliDP Polar flagellar hook-associated protein 2 2256 371-395 f a.7 601 601.52 601.52.1 alpha bundles Four-helical up-and-down bundle Flagellar hook-associated protein 1 helical domain Flagellar hook-associated protein 1 helical domain 001501272 e2d4yA1 002994500 Q56705_nD1 Q56705 FLIDP_VIBPA VP2256 fliDP Polar flagellar hook-associated protein 2 2256 106-205,426-435 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 002031929 e5h5wA1 002994501 Q56705_nD6 Q56705 FLIDP_VIBPA VP2256 fliDP Polar flagellar hook-associated protein 2 2256 11-70,486-665 f a.7 601 601.50 601.50.1 alpha bundles Four-helical up-and-down bundle Flagellar cap protein FliD helical bundle domain Flagellar cap protein FliD helical bundle domain 002036579 e5h5vC3 002994502 Q87MV0_nD3 Q87MV0 Q87MV0_VIBPA VP2131 Integrase 2131 246-440 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000150341 e3vcfA1 002994503 Q87MV0_nD2 Q87MV0 Q87MV0_VIBPA VP2131 Integrase 2131 136-240 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002994504 Q87MV0_nD1 Q87MV0 Q87MV0_VIBPA VP2131 Integrase 2131 1-85 f a.7 3826 3826.1 3826.1.1 alpha bundles Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) Copper-sensitive operon repressor (CsoR) 001871271 e5lcyB1 002994505 Q87N96_nD3 Q87N96 Q87N96_VIBPA VP1979 EAL domain-containing protein 1979 256-415 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 001411682 e4rnhA2 002994506 Q87N96_nD4 Q87N96 Q87N96_VIBPA VP1979 EAL domain-containing protein 1979 416-685 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002034028 e5m1tA1 002994507 Q87N96_nD1 Q87N96 Q87N96_VIBPA VP1979 EAL domain-containing protein 1979 11-125 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539975 e6hmjA2 002994508 Q87N96_nD2 Q87N96 Q87N96_VIBPA VP1979 EAL domain-containing protein 1979 126-250 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002994509 Q87N96_nD5 Q87N96 Q87N96_VIBPA VP1979 EAL domain-containing protein 1979 686-815 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000389224 e3lfzA2 002994510 Q87LW7_nD2 Q87LW7 Q87LW7_VIBPA VP2491 2491 121-250,311-335 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002994511 Q87LW7_nD1 Q87LW7 Q87LW7_VIBPA VP2491 2491 21-120,251-310 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545598 e4r6yA1 002994512 Q87HL2_nD3 Q87HL2 Q87HL2_VIBPA VPA0951 Peptidase_M10_C domain-containing protein 4030 316-485 f a.4 207 207.6 207.6.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Serralysin-like metalloprotease-C Serralysin-like metalloprotease-C 001687100 e5cvwA1 002994513 Q87HL2_nD2 Q87HL2 Q87HL2_VIBPA VPA0951 Peptidase_M10_C domain-containing protein 4030 191-305 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002084581 e5vebX1 002994514 Q87HL2_nD1 Q87HL2 Q87HL2_VIBPA VPA0951 Peptidase_M10_C domain-containing protein 4030 6-80,106-185 f a.12 224 224.1 224.1.1 a+b three layers Gelsolin-like Gelsolin-like Gelsolin-like 000420847 e3q2bA1 002994515 Q87RH7_nD1 Q87RH7 Q87RH7_VIBPA VP0817 817 1-85 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000312628 e2obkF1 002994516 Q87NF2_nD3 Q87NF2 Q87NF2_VIBPA VP1916 1916 296-525 f a.5 4091 4091.1 4091.1.1 beta complex topology L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like 002705902 e7kgmA1 002994517 Q87NF2_nD2 Q87NF2 Q87NF2_VIBPA VP1916 1916 181-295 f a.6 144 144.1 144.1.1 alpha arrays PGBD-like PGBD-like PGBD-like 002819638 e7aj9A1 002994518 Q87NF2_nD1 Q87NF2 Q87NF2_VIBPA VP1916 1916 48-180 f a.14 235 235.1 235.1.2 a+b complex topology Lysozyme-like Lysozyme-like Scaffolding domain of YcbB 002705903 e7kgmA2 002994519 Q87FD6_nD1 Q87FD6 MURQ2_VIBPA VPA1743 murQ2 N-acetylmuramic acid 6-phosphate etherase 2 4822 6-225 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001144909 e4lzjB1 002994520 Q87FD6_nD2 Q87FD6 MURQ2_VIBPA VPA1743 murQ2 N-acetylmuramic acid 6-phosphate etherase 2 4822 226-295 f a.6 103 103.13 103.13.1 alpha arrays RuvA-C C-terminal lid domain of glucokinase regulatory protein C-terminal lid domain of glucokinase regulatory protein 001272126 e3w0lB4 002994521 Q87JP3_nD1 Q87JP3 Q87JP3_VIBPA VPA0205 3284 1-235 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001683728 e3wxbA1 002994522 Q87IJ4_nD3 Q87IJ4 Q87IJ4_VIBPA VPA0612 3691 271-435 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002994523 Q87IJ4_nD2 Q87IJ4 Q87IJ4_VIBPA VPA0612 3691 141-270 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002994524 Q87IJ4_nD1 Q87IJ4 Q87IJ4_VIBPA VPA0612 3691 6-135 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002994525 Q87Q85_nD1 Q87Q85 Q87Q85_VIBPA VP1265 LIM zinc-binding domain-containing protein 1265 6-60 f a.19 377 377.1 377.1.1 few secondary structure elements Glucocorticoid receptor-like LIM domain-like LIM domain-like 001636870 e2orwB2 002994526 Q87GK7_nD1 Q87GK7 Q87GK7_VIBPA VPA1308 Porin 4387 21-375 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001694959 e4rjwA1 002994527 Q87Q65_nD1 Q87Q65 Q87Q65_VIBPA VP1285 1285 46-280 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001713322 e5d1wE1 002994528 Q87MH9_nD1 Q87MH9 Q87MH9_VIBPA VP2276 2276 36-190 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002561396 e6kzpA3 002994529 Q87MH9_nD2 Q87MH9 Q87MH9_VIBPA VP2276 2276 196-340 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002322773 e5wj9B2 002994530 Q87QT5_nD3 Q87QT5 Q87QT5_VIBPA VP1064 1064 256-345 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 001111407 e4l73A1 002994531 Q87QT5_nD2 Q87QT5 Q87QT5_VIBPA VP1064 1064 106-255 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001145865 e3l9wB1 002994532 Q87QT5_nD1 Q87QT5 Q87QT5_VIBPA VP1064 1064 6-105 f a.10 5054 5054.1 5054.1.1 alpha complex topology Voltage-gated ion channels Voltage-gated ion channels Voltage-gated ion channels 002599696 e6u6eB1 002994533 Q87QR1_nD5 Q87QR1 Q87QR1_VIBPA VP1088 1088 301-515 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 001722662 e5fd9A1 002994534 Q87QR1_nD2 Q87QR1 Q87QR1_VIBPA VP1088 1088 41-180 f a.7 601 601.4 601.4.1 alpha bundles Four-helical up-and-down bundle Histidine kinase associated sensor domains Histidine kinase associated sensor domains 000162589 e2d4uA1 002994535 Q87QR1_nD1 Q87QR1 Q87QR1_VIBPA VP1088 1088 6-40,181-210 f a.21 5043 5043.2 5043.2.1 extended segments Sensor proteins transmembrane domains NarQ transmembrane domain NarQ transmembrane domain 002080124 e5ijiA3 002994536 Q87QR1_nD4 Q87QR1 Q87QR1_VIBPA VP1088 1088 271-300,516-540 f a.7 3922 3922.1 3922.1.1 alpha bundles Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 Helical domain in structural maintenance of chromosomes protein 3 002098457 e5xnsA1 002994537 Q87QR1_nD3 Q87QR1 Q87QR1_VIBPA VP1088 1088 211-270 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002994538 Q87IT7_nD2 Q87IT7 Q87IT7_VIBPA VPA0519 3598 91-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002994539 Q87IT7_nD1 Q87IT7 Q87IT7_VIBPA VPA0519 3598 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002994540 Q87TF6_nD1 Q87TF6 YIHI_VIBPA VP0113 yihI Der GTPase-activating protein YihI 113 86-145 f a.7 192 192.15 192.15.1 alpha bundles Long alpha-hairpin Endosomal sorting complex assembly domains Endosomal sorting complex assembly domains 002636640 e6vmeF1 002994541 Q87IG0_nD2 Q87IG0 Q87IG0_VIBPA VPA0646 3725 191-325 f a.17 7522 7522.1 7522.1.1 a/b three-layered sandwiches TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like 000107623 e2ozlD1 002994542 Q87IG0_nD1 Q87IG0 Q87IG0_VIBPA VPA0646 3725 6-190 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 000110860 e1w85D2 002994543 Q87RI0_nD1 Q87RI0 Q87RI0_VIBPA VP0814 CBS domain-containing protein 814 1-135 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 002394564 e5nmuC1 002994544 Q87RQ6_nD1 Q87RQ6 Q87RQ6_VIBPA VP0721 mrdB Peptidoglycan glycosyltransferase MrdB 721 18-365 f a.7 7011 7011.1 7011.1.1 alpha bundles RodA transmembrane domain RodA transmembrane domain RodA transmembrane domain 002596950 e6pl5A1 002994545 Q87IA7_nD2 Q87IA7 Q87IA7_VIBPA VPA0699 TPR_REGION domain-containing protein 3778 156-375 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002457053 e6id1J1 002994546 Q87IA7_nD1 Q87IA7 Q87IA7_VIBPA VPA0699 TPR_REGION domain-containing protein 3778 71-155 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001546446 e4d4zB1 002994547 Q87PM2_nD2 Q87PM2 Q87PM2_VIBPA VP1480 1480 96-203 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000098 e1i8dA1 002994548 Q87PM2_nD1 Q87PM2 Q87PM2_VIBPA VP1480 1480 1-90 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001213243 e4gqnB4 002994549 Q87IU5_nD5 Q87IU5 Q87IU5_VIBPA VPA0511 3590 376-575 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002994550 Q87IU5_nD2 Q87IU5 Q87IU5_VIBPA VPA0511 3590 1-30,266-295 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002994551 Q87IU5_nD1 Q87IU5 Q87IU5_VIBPA VPA0511 3590 61-175 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000352473 e2zbbA1 002994552 Q87IU5_nD4 Q87IU5 Q87IU5_VIBPA VPA0511 3590 296-375,576-620 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 001171038 e4iloB5 002994553 Q87IU5_nD3 Q87IU5 Q87IU5_VIBPA VPA0511 3590 31-60,176-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002325680 e6fu4A1 002994554 Q87JV2_nD1 Q87JV2 Q87JV2_VIBPA VPA0146 3225 1-235 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000142980 e3qvqA1 002994555 Q87JS2_nD1 Q87JS2 Q87JS2_VIBPA VPA0176 HTH araC/xylS-type domain-containing protein 3255 16-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002546604 e6sdkA1 002994556 Q87TM1_nD3 Q87TM1 Q87TM1_VIBPA VP0048 48 271-490 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001545934 e3i5oB1 002994557 Q87TM1_nD2 Q87TM1 Q87TM1_VIBPA VP0048 48 21-55,181-270,491-515 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002722355 e7kz9A2 002994558 Q87TM1_nD1 Q87TM1 Q87TM1_VIBPA VP0048 48 56-155 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 001298871 e3e3kB1 002994559 Q87R21_nD3 Q87R21 Q87R21_VIBPA VP0977 Lipoprotein-releasing ABC transporter permease subunit LolC 977 6-60,266-405 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002589205 e5nikK1 002994560 Q87R21_nD2 Q87R21 Q87R21_VIBPA VP0977 Lipoprotein-releasing ABC transporter permease subunit LolC 977 101-220 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002138588 e5naaA1 002994561 Q87R21_nD1 Q87R21 Q87R21_VIBPA VP0977 Lipoprotein-releasing ABC transporter permease subunit LolC 977 61-100,221-260 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002390059 e6f3zA2 002994562 Q87KK5_nD2 Q87KK5 Q87KK5_VIBPA VP2972 Histidine kinase 2971 206-405 f a.10 131 131.1 131.1.1 alpha complex topology PDEase-like HD-domain/PDEase-like HD-domain/PDEase-like 000138716 e3m1tA1 002994563 Q87KK5_nD1 Q87KK5 Q87KK5_VIBPA VP2972 Histidine kinase 2971 1-200 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002519516 e6hq7A1 002994564 Q87PL0_nD1 Q87PL0 Q87PL0_VIBPA VP1492 Fatty acid hydroxylase domain-containing protein 1492 11-228,251-265 f a.10 3978 3978.1 3978.1.1 alpha complex topology Integral membrane Acyl-CoA desaturase Integral membrane Acyl-CoA desaturase Integral membrane Acyl-CoA desaturase 001676532 e4zr1B1 002994565 Q87H50_nD3 Q87H50 Q87H50_VIBPA VPA1115 GGDEF domain-containing protein 4194 456-490,546-680 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002994566 Q87H50_nD2 Q87H50 Q87H50_VIBPA VPA1115 GGDEF domain-containing protein 4194 416-455 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001148735 e3qkyA4 002994567 Q87H50_nD1 Q87H50 Q87H50_VIBPA VPA1115 GGDEF domain-containing protein 4194 6-400 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002439622 e6af0A1 002994568 Q87SL7_nD1 Q87SL7 Q87SL7_VIBPA VP0405 dnaG DNA primase 405 1-100 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 000158700 e2au3A3 002994569 Q87SL7_nD2 Q87SL7 Q87SL7_VIBPA VP0405 dnaG DNA primase 405 121-245 f a.11 4023 4023.1 4023.1.1 a+b two layers N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core 001407279 e3b39A4 002994570 Q87SL7_nD5 Q87SL7 Q87SL7_VIBPA VP0405 dnaG DNA primase 405 451-580 f a.6 507 507.1 507.1.1 alpha arrays DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related DnaB helicase N-terminal domain-related 002443879 e6cbrA1 002994571 Q87SL7_nD3 Q87SL7 Q87SL7_VIBPA VP0405 dnaG DNA primase 405 246-375 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 002056097 e5vazA2 002994572 Q87SL7_nD4 Q87SL7 Q87SL7_VIBPA VP0405 dnaG DNA primase 405 376-440 f a.7 4973 4973.1 4973.1.1 alpha bundles helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core 002168119 e5w35B1 002994573 Q87N94_nD4 Q87N94 Q87N94_VIBPA VP1981 1981 361-420 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002994574 Q87N94_nD3 Q87N94 Q87N94_VIBPA VP1981 1981 41-70,226-325 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002524055 e6pzjA1 002994575 Q87N94_nD1 Q87N94 Q87N94_VIBPA VP1981 1981 71-225 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002168239 e6f9gD1 002994576 Q87N94_nD6 Q87N94 Q87N94_VIBPA VP1981 1981 526-600 f a.7 3291 3291.1 3291.1.1 alpha bundles Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related Charged multivesicular body protein 3 (CHMP3)-related 002083250 e5vo5A1 002994577 Q87N94_nD5 Q87N94 Q87N94_VIBPA VP1981 1981 421-525,601-690 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001313624 e4tkoB3 002994578 Q87N94_nD2 Q87N94 Q87N94_VIBPA VP1981 1981 6-40,326-360 f a.7 192 192.1 192.1.1 alpha bundles Long alpha-hairpin GreA transcript cleavage protein, N-terminal domain GreA transcript cleavage protein, N-terminal domain 000148495 e3ur1C1 002994579 Q87NI4_nD1 Q87NI4 Q87NI4_VIBPA VP1884 ParE toxin of type II toxin-antitoxin system, parDE 1884 6-50 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 000138730 e2kheA1 002994580 Q87MH4_nD1 Q87MH4 Q87MH4_VIBPA VP2281 DUF2069 domain-containing protein 2281 11-130 f a.7 633 633.10 633.10.1 alpha bundles Bromodomain-like IVS-encoded protein-like IVS-encoded protein-like 000003660 e2gscA1 002994581 Q87KX1_nD2 Q87KX1 Q87KX1_VIBPA VP2853 Multidrug resistance protein NorM 2852 246-460 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002440127 e6idpA1 002994582 Q87KX1_nD1 Q87KX1 Q87KX1_VIBPA VP2853 Multidrug resistance protein NorM 2852 11-245 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002072264 e3vvsA2 002994583 Q87H59_nD3 Q87H59 Q87H59_VIBPA VPA1106 4185 176-204 f a.15 4060 4060.1 4060.1.1 a+b duplicates or obligate multimers NSP3 homodimer NSP3 homodimer NSP3 homodimer 000007720 e1knzA1 002994584 Q87H59_nD2 Q87H59 Q87H59_VIBPA VPA1106 4185 56-175 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000996940 e3bk6B1 002994585 Q87H59_nD1 Q87H59 Q87H59_VIBPA VPA1106 4185 21-55 f a.3 3529 3529.1 3529.1.1 beta sandwiches Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain Major vault protein (MVP) structural repeat domain 001434207 e4v60I2 002994586 Q87LY3_nD1 Q87LY3 GSA_VIBPA VP2475 hemL Glutamate-1-semialdehyde 2,1-aminomutase 2475 6-320 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 002605245 e6w80A1 002994587 Q87LY3_nD2 Q87LY3 GSA_VIBPA VP2475 hemL Glutamate-1-semialdehyde 2,1-aminomutase 2475 321-430 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002780225 e7lldB2 002994588 Q87RY9_nD2 Q87RY9 Q87RY9_VIBPA VP0635 635 96-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002994589 Q87RY9_nD1 Q87RY9 Q87RY9_VIBPA VP0635 635 6-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002994590 Q87SK9_nD2 Q87SK9 CCA_VIBPA VP0414 cca Multifunctional CCA protein 414 121-370,391-400 f a.10 131 131.2 131.2.1 alpha complex topology PDEase-like Poly A polymerase C-terminal region-like Poly A polymerase C-terminal region-like 001143835 e3wfpA1 002994591 Q87SK9_nD1 Q87SK9 CCA_VIBPA VP0414 cca Multifunctional CCA protein 414 1-120 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001920509 e4wc7A2 002994592 Q87QF5_nD1 Q87QF5 Q87QF5_VIBPA VP1194 1194 1-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002057239 e5x3xB1 002994593 Q87JG6_nD2 Q87JG6 CH602_VIBPA VPA0287 groEL2 Chaperonin GroEL 2 3366 6-135,411-530 f a.7 593 593.1 593.1.1 alpha bundles GroEL equatorial domain-like GroEL equatorial domain-like GroEL equatorial domain-like 000057390 e1kp8E1 002994594 Q87JG6_nD1 Q87JG6 CH602_VIBPA VPA0287 groEL2 Chaperonin GroEL 2 3366 136-190,376-410 f a.18 2498 2498.5 2498.5.1 mixed a+b and a/b Zincin-like GroEL-intermediate domain like GroEL-intermediate domain like 000068806 e1kp8E2 002994595 Q87JG6_nD3 Q87JG6 CH602_VIBPA VPA0287 groEL2 Chaperonin GroEL 2 3366 191-375 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000117595 e1sjpB3 002994596 Q87RH4_nD2 Q87RH4 KAD_VIBPA VP0822 adk Adenylate kinase 822 121-155 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001316162 e4nu0A1 002994597 Q87RH4_nD1 Q87RH4 KAD_VIBPA VP0822 adk Adenylate kinase 822 1-120,156-214 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000446979 e3tlxB1 002994598 Q87RE8_nD2 Q87RE8 SUCC_VIBPA VP0849 sucC Succinate--CoA ligase [ADP-forming] subunit beta 849 241-385 f a.17 2007 2007.3 2007.3.1 a/b three-layered sandwiches Flavodoxin-like Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 000104557 e2nu8B2 002994599 Q87RE8_nD1 Q87RE8 SUCC_VIBPA VP0849 sucC Succinate--CoA ligase [ADP-forming] subunit beta 849 1-235 f a.14 206 206.1 206.1.3 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp ATP-grasp 000150924 e3ufxB1 002994600 Q877T5_nD1 Q877T5 EFTU_VIBPA VP2770VP2930 tufAtufB Elongation factor Tu 2769 6-205 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001100539 e4h9gA3 002994601 Q877T5_nD2 Q877T5 EFTU_VIBPA VP2770VP2930 tufAtufB Elongation factor Tu 2769 206-300 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 000000130 e2c78A1 002994602 Q877T5_nD3 Q877T5 EFTU_VIBPA VP2770VP2930 tufAtufB Elongation factor Tu 2769 301-394 f a.1 1 1.1 1.1.8 beta barrels cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain 001312961 e2hcjB2 002994603 Q87T41_nD1 Q87T41 Q87T41_VIBPA VP0229 dTDP-4-dehydrorhamnose 3,5-epimerase 229 1-180 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000304194 e2ixkA1 002994604 Q87JB2_nD2 Q87JB2 Q87JB2_VIBPA VPA0341 Phospholipase D family protein 3420 286-505 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000366780 e3hsiB1 002994605 Q87JB2_nD1 Q87JB2 Q87JB2_VIBPA VPA0341 Phospholipase D family protein 3420 36-285 f a.12 300 300.1 300.1.1 a+b three layers Phospholipase D/nuclease Phospholipase D/nuclease Phospholipase D/nuclease 000366780 e3hsiB1 002994606 Q87J35_nD1 Q87J35 Q87J35_VIBPA VPA0418 DUF1496 domain-containing protein 3497 46-85 f a.19 391 391.1 391.1.1 few secondary structure elements Fibronectin type I module-like Fibronectin type I module-like Fibronectin type I module 001759945 e2mhpA2 002994607 Q87IP9_nD1 Q87IP9 Q87IP9_VIBPA VPA0557 Outer membrane lipoprotein-sorting protein 3636 21-245 f a.2 71 71.1 71.1.1 beta meanders Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB Lipoprotein localization factors LolAB 001548778 e4z48B1 002994608 Q87PY8_nD1 Q87PY8 Q87PY8_VIBPA VP1361 Intermembrane phospholipid transport system permease protein MlaE 1362 6-95 f a.17 2496 2496.1 2496.1.1 a/b three-layered sandwiches SpoIIaa-like SpoIIaa-like SpoIIaa-like 002771392 e7lhvA2 002994609 Q87PY8_nD2 Q87PY8 Q87PY8_VIBPA VP1361 Intermembrane phospholipid transport system permease protein MlaE 1362 106-130 f a.7 5073 5073.1 5073.1.2 alpha bundles Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain-related Copper efflux ATPase transmembrane domain 001137274 e4bbjA1 002994610 Q87PY8_nD3 Q87PY8 Q87PY8_VIBPA VP1361 Intermembrane phospholipid transport system permease protein MlaE 1362 141-350 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002464330 e6mjpF2 002994611 Q87J18_nD2 Q87J18 Q87J18_VIBPA VPA0435 HNH endonuclease 3514 126-284 f a.2 77 77.1 77.1.1 beta meanders open-sided beta-meander Outer surface protein Outer surface protein 002642884 e6kk9B1 002994612 Q87J18_nD1 Q87J18 Q87J18_VIBPA VPA0435 HNH endonuclease 3514 36-110 f a.19 378 378.1 378.1.1 few secondary structure elements His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases 002036620 e5h0mA1 002994613 Q79YW0_nD2 Q79YW0 Q79YW0_VIBPA VP2249 Flagellar M-ring protein 2249 81-130 f a.11 327 327.16 327.16.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system 001405794 e4w4mK1 002994614 Q79YW0_nD1 Q79YW0 Q79YW0_VIBPA VP2249 Flagellar M-ring protein 2249 51-75 f a.21 6055 6055.1 6055.1.1 extended segments Preprotein translocase subunit YajC Preprotein translocase subunit YajC Preprotein translocase subunit YajC 002131732 e3jc9Oa2 002994615 Q79YW0_nD3 Q79YW0 Q79YW0_VIBPA VP2249 Flagellar M-ring protein 2249 136-260 f a.11 327 327.13 327.13.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif I in type III secretion system Ring-building motif I in type III secretion system 002726985 e7bk0X2 002994616 Q79YW0_nD4 Q79YW0 Q79YW0_VIBPA VP2249 Flagellar M-ring protein 2249 261-320,367-450 f a.11 327 327.13 327.13.1 a+b two layers Alpha-lytic protease prodomain-like Ring-building motif I in type III secretion system Ring-building motif I in type III secretion system 002726984 e7bk0X1 002994617 Q87HD8_nD1 Q87HD8 Q87HD8_VIBPA VPA1027 Hcp1 family type VI secretion system effector 4106 1-159 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001839949 e4w64A1 002994618 Q87J34_nD1 Q87J34 Q87J34_VIBPA VPA0419 DUF406 family protein 3498 16-99 f a.11 3313 3313.1 3313.1.1 a+b two layers Uncharacterized protein VC_A0919 Uncharacterized protein VC_A0919 Uncharacterized protein VC_A0919 001049721 e2jz5A1 002994619 Q87QQ2_nD1 Q87QQ2 Q87QQ2_VIBPA VP1097 1097 91-185 f a.6 4990 4990.1 4990.1.1 alpha arrays Lipase chaperone LifO-like Lipase chaperone LifO-like Lipase chaperone LifO-like 000053360 e2es4E1 002994620 Q87QQ2_nD2 Q87QQ2 Q87QQ2_VIBPA VP1097 1097 166-335 f a.6 4990 4990.1 4990.1.1 alpha arrays Lipase chaperone LifO-like Lipase chaperone LifO-like Lipase chaperone LifO-like 000053360 e2es4E1 002994621 Q87PF5_nD2 Q87PF5 Q87PF5_VIBPA VP1547 histidine kinase 1547 201-280 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001290980 e4q20A2 002994622 Q87PF5_nD1 Q87PF5 Q87PF5_VIBPA VP1547 histidine kinase 1547 1-200 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000144753 e3trcA1 002994623 Q87PF5_nD4 Q87PF5 Q87PF5_VIBPA VP1547 histidine kinase 1547 446-575 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002116945 e5lnmA1 002994624 Q87PF5_nD3 Q87PF5 Q87PF5_VIBPA VP1547 histidine kinase 1547 281-440 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002568309 e6qrjA2 002994625 Q87PR1_nD2 Q87PR1 Q87PR1_VIBPA VP1440 DUF2760 domain-containing protein 1440 141-185 f a.5 706 706.1 706.1.1 beta complex topology Head domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 000002307 e1dkgA1 002994626 Q87PR1_nD1 Q87PR1 Q87PR1_VIBPA VP1440 DUF2760 domain-containing protein 1440 86-140 f a.21 3456 3456.1 3456.1.1 extended segments NADH-quinone oxidoreductase subunit A NADH-quinone oxidoreductase subunit A NADH-quinone oxidoreductase subunit A 002648430 e6i0dP1 002994627 Q87FF5_nD1 Q87FF5 Q87FF5_VIBPA VPA1724 Sodium/proline symporter 4803 1-490 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002808506 e7vsiA1 002994628 Q87RY7_nD2 Q87RY7 Q87RY7_VIBPA VP0637 LemA family protein 637 61-220 f a.7 192 192.29 192.29.1 alpha bundles Long alpha-hairpin bMERB domain (bivalent Mical/EHBP Rab binding) bMERB domain (bivalent Mical/EHBP Rab binding) 002492086 e6egcA1 002994629 Q87RY7_nD1 Q87RY7 Q87RY7_VIBPA VP0637 LemA family protein 637 26-60 f a.21 3569 3569.1 3569.1.1 extended segments Epidermal growth factor receptor transmembrane-juxtamembrane segment-like Epidermal growth factor receptor transmembrane-juxtamembrane segment Epidermal growth factor receptor transmembrane-juxtamembrane segment 001764134 e2n2aA1 002994630 Q87QN0_nD1 Q87QN0 Q87QN0_VIBPA VP1119 1119 1-135 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 000006396 e3dm8A1 002994631 Q87RS7_nD1 Q87RS7 Q87RS7_VIBPA VP0700 TPR_REGION domain-containing protein 700 31-480 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002411418 e5zyqA1 002994632 Q87RS7_nD2 Q87RS7 Q87RS7_VIBPA VP0700 TPR_REGION domain-containing protein 700 496-755 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002994633 Q87QQ8_nD4 Q87QQ8 Q87QQ8_VIBPA VP1091 1091 36-50,301-375 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002994634 Q87QQ8_nD3 Q87QQ8 Q87QQ8_VIBPA VP1091 1091 51-60,211-300 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002067198 e5ng5E1 002994635 Q87QQ8_nD1 Q87QQ8 Q87QQ8_VIBPA VP1091 1091 61-100,171-210 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001160273 e2v4dE8 002994636 Q87QQ8_nD2 Q87QQ8 Q87QQ8_VIBPA VP1091 1091 101-170 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 002067201 e5ng5E4 002994637 Q87RW7_nD1 Q87RW7 Q87RW7_VIBPA VP0659 Branched-chain amino acid ABC transporter substrate-binding protein 659 6-110 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000006681 e3ci0K3 002994638 Q87RW7_nD2 Q87RW7 Q87RW7_VIBPA VP0659 Branched-chain amino acid ABC transporter substrate-binding protein 659 116-163,202-420 f a.4 207 207.10 207.10.1 beta duplicates or obligate multimers Single-stranded right-handed beta-helix Arctic yeast antifreeze protein Arctic yeast antifreeze protein 002132860 e5uytA1 002994639 Q87JL8_nD1 Q87JL8 Q87JL8_VIBPA VPA0231 3310 1-145 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000402807 e3oxpB1 002994640 Q87J68_nD1 Q87J68 Q87J68_VIBPA VPA0385 3464 6-374 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000303207 e2gq8A1 002994641 Q87PI9_nD4 Q87PI9 Q87PI9_VIBPA VP1513 1513 786-950 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 000000022 e1kqfA1 002994642 Q87PI9_nD3 Q87PI9 Q87PI9_VIBPA VP1513 1513 116-190,386-775 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 001686682 e4v4dS3 002994643 Q87PI9_nD1 Q87PI9 Q87PI9_VIBPA VP1513 1513 61-115 f a.11 1001 1001.1 1001.1.1 a+b two layers Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 002776377 e7bkdD3 002994644 Q87PI9_nD2 Q87PI9 Q87PI9_VIBPA VP1513 1513 191-385 f a.17 2003 2003.2 2003.2.1 a/b three-layered sandwiches Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3 002105089 e2ivfA6 002994645 Q87IB7_nD3 Q87IB7 Q87IB7_VIBPA VPA0689 VWFA domain-containing protein 3768 371-555 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002464284 e6hftA1 002994646 Q87IB7_nD1 Q87IB7 Q87IB7_VIBPA VPA0689 VWFA domain-containing protein 3768 1-40,66-90,291-310 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002781419 e7mq8LP1 002994647 Q87IB7_nD2 Q87IB7 Q87IB7_VIBPA VPA0689 VWFA domain-containing protein 3768 96-285 f a.17 2006 2006.1 2006.1.6 a/b three-layered sandwiches HAD domain-like HAD domain-related vWA-like 001396444 e2ww8A1 002994648 Q87HP0_nD1 Q87HP0 Q87HP0_VIBPA VPA0923 Transcriptional regulator 4002 21-93 f a.11 4152 4152.2 4152.2.1 a+b two layers Shew3726-like Uncharacterized protein CV_2116 Uncharacterized protein CV_2116 000184740 e2konA1 002994649 Q87J79_nD2 Q87J79 Q87J79_VIBPA VPA0374 3453 236-354 f a.17 7507 7507.1 7507.1.1 a/b three-layered sandwiches Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain Glutaminase/Asparaginase C-terminal domain 002523037 e6nx8B1 002994650 Q87J79_nD1 Q87J79 Q87J79_VIBPA VPA0374 3453 26-235 f a.17 7546 7546.1 7546.1.1 a/b three-layered sandwiches Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain Glutaminase/Asparaginase N-terminal domain 001176538 e1hg0D2 002994651 Q87RY3_nD1 Q87RY3 Q87RY3_VIBPA VP0643 Tyr recombinase domain-containing protein 643 21-85 f a.11 252 252.2 252.2.1 a+b two layers DNA-binding domain GCC-box binding domain-like GCC-box binding domain-like 000134360 e2wcc31 002994652 Q87RY3_nD2 Q87RY3 Q87RY3_VIBPA VP0643 Tyr recombinase domain-containing protein 643 101-250 f a.7 603 603.2 603.2.1 alpha bundles STAT-like STAT STAT 002142308 e5oenB1 002994653 Q87RY3_nD4 Q87RY3 Q87RY3_VIBPA VP0643 Tyr recombinase domain-containing protein 643 391-595 f a.6 101 101.1 101.1.8 alpha arrays HTH HTH DNA breaking-rejoining enzymes 000161394 e2h7fX1 002994654 Q87RY3_nD3 Q87RY3 Q87RY3_VIBPA VP0643 Tyr recombinase domain-containing protein 643 256-390 f a.6 186 186.1 186.1.1 alpha arrays lambda integrase-N-like lambda integrase-N lambda integrase-N 001936033 e5jjvB3 002994655 Q87L20_nD2 Q87L20 ARGD_VIBPA VP2797 argD Acetylornithine aminotransferase 2796 326-403 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 001611907 e4adbB2 002994656 Q87L20_nD1 Q87L20 ARGD_VIBPA VP2797 argD Acetylornithine aminotransferase 2796 1-325 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001192824 e4jevB3 002994657 Q87QH1_nD4 Q87QH1 Q87QH1_VIBPA VP1178 1178 16-55,346-525 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 001396264 e3w9iF8 002994658 Q87QH1_nD3 Q87QH1 Q87QH1_VIBPA VP1178 1178 151-195,286-345 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001312384 e4k0eA3 002994659 Q87QH1_nD1 Q87QH1 Q87QH1_VIBPA VP1178 1178 56-150 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002672273 e6vejC1 002994660 Q87QH1_nD7 Q87QH1 Q87QH1_VIBPA VP1178 1178 676-720,811-875 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002730399 e7kf7A5 002994661 Q87QH1_nD8 Q87QH1 Q87QH1_VIBPA VP1178 1178 526-565,876-1030 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002994662 Q87QH1_nD5 Q87QH1 Q87QH1_VIBPA VP1178 1178 566-675 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002754738 e7m4pA4 002994663 Q87QH1_nD2 Q87QH1 Q87QH1_VIBPA VP1178 1178 196-225,246-280 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002730396 e7kf7A2 002994664 Q87QH1_nD6 Q87QH1 Q87QH1_VIBPA VP1178 1178 721-810 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002792356 e7b8sC4 002994665 Q79YT6_nD2 Q79YT6 Q79YT6_VIBPA VPA1512 4591 151-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002994666 Q79YT6_nD1 Q79YT6 Q79YT6_VIBPA VPA1512 4591 41-150,266-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002994667 Q87KW7_nD1 Q87KW7 Q87KW7_VIBPA VP2858 2857 1-115 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001148331 e4knyB3 002994668 Q87KW7_nD2 Q87KW7 Q87KW7_VIBPA VP2858 2857 116-229 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001821054 e4uhtA1 002994669 Q87TK3_nD1 Q87TK3 Q87TK3_VIBPA VP0066 Purine nucleoside phosphorylase 66 16-285 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 000140374 e3odgA1 002994670 Q87G84_nD1 Q87G84 Q87G84_VIBPA VPA1433 histidine kinase 4512 11-115 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002063586 e5k7vC2 002994671 Q87G84_nD2 Q87G84 Q87G84_VIBPA VPA1433 histidine kinase 4512 121-190 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 001281440 e4kp4B1 002994672 Q87G84_nD3 Q87G84 Q87G84_VIBPA VPA1433 histidine kinase 4512 191-348 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002137976 e6blkC1 002994673 P0A2W2_nD1 P0A2W2 ACP_VIBPA VP2053 acpP Acyl carrier protein 2053 6-75 f a.7 132 132.1 132.1.1 alpha bundles ACP-like Acyl-carrier protein (ACP) Acyl-carrier protein (ACP) 002731228 e7kw0A1 002994674 Q87KV1_nD5 Q87KV1 Q87KV1_VIBPA VP2874 histidine kinase 2873 856-1005 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223391 e3d2rB3 002994675 Q87KV1_nD2 Q87KV1 Q87KV1_VIBPA VP2874 histidine kinase 2873 531-605 f a.6 108 108.1 108.1.1 alpha arrays EF-hand EF-hand-related EF-hand 000003195 e1wlmA1 002994676 Q87KV1_nD6 Q87KV1 Q87KV1_VIBPA VP2874 histidine kinase 2873 1011-1143 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002081078 e5kbxB1 002994677 Q87KV1_nD1 Q87KV1 Q87KV1_VIBPA VP2874 histidine kinase 2873 1-525 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 001834291 e2wswA1 002994678 Q87KV1_nD4 Q87KV1 Q87KV1_VIBPA VP2874 histidine kinase 2873 766-855 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001398370 e4bivB1 002994679 Q87KV1_nD3 Q87KV1 Q87KV1_VIBPA VP2874 histidine kinase 2873 621-765 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002994680 Q87JE4_nD2 Q87JE4 PNCB_VIBPA VPA0309 pncB Nicotinate phosphoribosyltransferase 3388 146-410 f a.16 2002 2002.4 2002.4.1 a/b barrels TIM beta/alpha-barrel Nicotinate/Quinolinate PRTase C-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 000308635 e2im5C2 002994681 Q87JE4_nD1 Q87JE4 PNCB_VIBPA VPA0309 pncB Nicotinate phosphoribosyltransferase 3388 6-145 f a.14 325 325.1 325.1.4 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Nicotinate/Quinolinate PRTase N-terminal domain-like 000085138 e1yirB1 002994682 Q87KS0_nD1 Q87KS0 Q87KS0_VIBPA VP2906 Zf_CopZ domain-containing protein 2905 36-75 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 002816333 e7ae4c1 002994683 Q87RA6_nD1 Q87RA6 Q87RA6_VIBPA VP0891 891 6-120 f a.11 222 222.1 222.1.1 a+b two layers Thioesterase/thiol ester dehydrase-isomerase-like Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 000350615 e3esiB1 002994684 Q87JA6_nD2 Q87JA6 Q87JA6_VIBPA VPA0347 Transposase 3426 201-460 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 001316866 e4oyyI1 002994685 Q87JA6_nD1 Q87JA6 Q87JA6_VIBPA VPA0347 Transposase 3426 107-190 f a.11 4312 4312.1 4312.1.1 a+b two layers RelE-like RelE-like RelE-like 000073230 e1wmiC1 002994686 Q87JP7_nD1 Q87JP7 Q87JP7_VIBPA VPA0201 3280 36-194 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002129319 e5oasA1 002994687 Q87RZ2_nD1 Q87RZ2 Q87RZ2_VIBPA VP0632 632 36-465 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002774760 e7jsjB1 002994688 Q87KJ0_nD4 Q87KJ0 Q87KJ0_VIBPA VP2987 2986 531-700 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001187148 e3zx3B3 002994689 Q87KJ0_nD3 Q87KJ0 Q87KJ0_VIBPA VP2987 2986 416-530 f a.11 3203 3203.1 3203.1.1 a+b two layers Putative oxidoreductase Putative oxidoreductase Putative oxidoreductase 002791477 e7aqrQ1 002994690 Q87KJ0_nD5 Q87KJ0 Q87KJ0_VIBPA VP2987 2986 731-830 f a.11 214 214.1 214.1.1 a+b two layers SH2 SH2 SH2 002561960 e6pxbA1 002994691 Q87KJ0_nD2 Q87KJ0 Q87KJ0_VIBPA VP2987 2986 236-405 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000164846 e2jpuA1 002994692 Q87KJ0_nD1 Q87KJ0 Q87KJ0_VIBPA VP2987 2986 6-65,91-235 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 000396952 e3nkuB1 002994693 Q87GI5_nD1 Q87GI5 Q87GI5_VIBPA VPA1331 4410 6-60,103-135 f a.6 148 148.1 148.1.1 alpha arrays Histone-like Histone-related Histone 002573090 e6t9iF1 002994694 Q87PX3_nD3 Q87PX3 Q87PX3_VIBPA VP1377 Sensor domain-containing phosphodiesterase 1377 346-595 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002141054 e5m3cA2 002994695 Q87PX3_nD1 Q87PX3 Q87PX3_VIBPA VP1377 Sensor domain-containing phosphodiesterase 1377 31-175 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002710376 e6ph4B3 002994696 Q87PX3_nD2 Q87PX3 Q87PX3_VIBPA VP1377 Sensor domain-containing phosphodiesterase 1377 176-345 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002994697 Q87KC5_nD4 Q87KC5 Q87KC5_VIBPA VP3052 3051 261-340 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002547686 e6qgtG1 002994698 Q87KC5_nD3 Q87KC5 Q87KC5_VIBPA VP3052 3051 106-130,341-375 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002414893 e6hcyB1 002994699 Q87KC5_nD1 Q87KC5 Q87KC5_VIBPA VP3052 3051 81-105 f a.7 633 633.23 633.23.1 alpha bundles Bromodomain-like Claudin Claudin 002821690 e7rz5A2 002994700 Q87KC5_nD5 Q87KC5 Q87KC5_VIBPA VP3052 3051 376-485 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000196413 e2r39A1 002994701 Q87KC5_nD2 Q87KC5 Q87KC5_VIBPA VP3052 3051 51-90,131-250 f a.10 5061 5061.1 5061.1.1 alpha complex topology Preprotein translocase SecY subunit Preprotein translocase SecY subunit Preprotein translocase SecY subunit 002705662 e7kamA1 002994702 Q87SA2_nD1 Q87SA2 Q87SA2_VIBPA VP0522 Probable membrane transporter protein 522 6-263 f a.7 7014 7014.1 7014.1.1 alpha bundles Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 002420852 e6cb2A1 002994703 Q87LU4_nD1 Q87LU4 Q87LU4_VIBPA VP2514 Carbonic anhydrase 2514 1-220 f a.17 4126 4126.1 4126.1.1 a/b three-layered sandwiches beta-carbonic anhydrase-like beta-carbonic anhydrase beta-carbonic anhydrase 001716981 e5cxkG1 002994704 Q87MX9_nD1 Q87MX9 Q87MX9_VIBPA VP2097 Putative gluconeogenesis factor 2097 6-295 f a.17 7513 7513.1 7513.1.1 a/b three-layered sandwiches CofD-like CofD-like CofD-like 000164359 e2ppvA1 002994705 Q87QB7_nD1 Q87QB7 Q87QB7_VIBPA VP1233 1233 1-85 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000116223 e1grxA1 002994706 Q87P53_nD1 Q87P53 Q87P53_VIBPA VP1665 1665 1-123 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 000006636 e1xkpB1 002994707 Q87R67_nD1 Q87R67 Q87R67_VIBPA VP0931 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase 931 11-290 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 000412667 e3qkaD1 002994708 Q87MF0_nD1 Q87MF0 LPXB_VIBPA VP2305 lpxB Lipid-A-disaccharide synthase 2305 6-170 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002142602 e5w8nA2 002994709 Q87MF0_nD2 Q87MF0 LPXB_VIBPA VP2305 lpxB Lipid-A-disaccharide synthase 2305 171-375 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002162610 e5vaeA1 002994710 Q87SW0_nD2 Q87SW0 F16PA_VIBPA VP0313 fbp Fructose-1,6-bisphosphatase class 1 312 201-335 f a.17 7587 7587.1 7587.1.1 a/b three-layered sandwiches Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases Rossmann-like domain in carbohydrate phosphatases 000160402 e2gq1A1 002994711 Q87SW0_nD1 Q87SW0 F16PA_VIBPA VP0313 fbp Fructose-1,6-bisphosphatase class 1 312 1-200 f a.11 4018 4018.1 4018.1.1 a+b two layers a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases a+b domain in carbohydrate phosphatases 001174169 e2qvrA3 002994712 Q87G19_nD1 Q87G19 Q87G19_VIBPA VPA1498 L-lactate permease 4577 1-563 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002994713 Q87RB5_nD1 Q87RB5 Q87RB5_VIBPA VP0882 882 1-240 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001201413 e4iiuD2 002994714 Q87GY1_nD2 Q87GY1 Q87GY1_VIBPA VPA1184 4263 206-390 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001310594 e4oh3B2 002994715 Q87GY1_nD1 Q87GY1 Q87GY1_VIBPA VPA1184 4263 1-195 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001495364 e4uvmA1 002994716 Q87LG6_nD2 Q87LG6 SYV_VIBPA VP2646 valS Valine--tRNA ligase 2645 6-195,361-435,471-605 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002488795 e3fnrA1 002994717 Q87LG6_nD5 Q87LG6 SYV_VIBPA VP2646 valS Valine--tRNA ligase 2645 791-880 f a.12 3008 3008.1 3008.1.1 a+b three layers A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 001498181 e4xkzA2 002994718 Q87LG6_nD6 Q87LG6 SYV_VIBPA VP2646 valS Valine--tRNA ligase 2645 886-950 f a.7 192 192.7 192.7.1 alpha bundles Long alpha-hairpin tRNA-binding arm tRNA-binding arm 000004673 e1ivsA3 002994719 Q87LG6_nD1 Q87LG6 SYV_VIBPA VP2646 valS Valine--tRNA ligase 2645 196-360 f a.1 1 1.1 1.1.1 beta barrels cradle loop barrel RIFT-related acid protease 000000269 e1wkaA1 002994720 Q87LG6_nD3 Q87LG6 SYV_VIBPA VP2646 valS Valine--tRNA ligase 2645 436-470 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002599809 e1wz2A1 002994721 Q87LG6_nD4 Q87LG6 SYV_VIBPA VP2646 valS Valine--tRNA ligase 2645 606-790 f a.7 140 140.1 140.1.1 alpha bundles Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 002488949 e1jzqA6 002994722 Q87MJ9_nD2 Q87MJ9 Q87MJ9_VIBPA VP2239 fliP Flagellar biosynthetic protein FliP 2239 231-285 f a.7 5073 5073.1 5073.1.1 alpha bundles Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain M 002540090 e6k7lA2 002994723 Q87MJ9_nD1 Q87MJ9 Q87MJ9_VIBPA VP2239 fliP Flagellar biosynthetic protein FliP 2239 86-230 f a.7 1180 1180.1 1180.1.1 alpha bundles Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain 002102658 e5h72B1 002994724 Q87IM9_nD1 Q87IM9 PHS_VIBPA VPA0577 Putative pterin-4-alpha-carbinolamine dehydratase 3656 16-110 f a.11 305 305.2 305.2.1 a+b two layers DCoH-like Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 000345650 e2v6uA1 002994725 Q79YY9_nD2 Q79YY9 Q79YY9_VIBPA VP0777 Basal-body rod modification protein FlgD 777 111-195 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001780764 e3osvB1 002994726 Q79YY9_nD1 Q79YY9 Q79YY9_VIBPA VP0777 Basal-body rod modification protein FlgD 777 66-95 f a.7 192 192.18 192.18.1 alpha bundles Long alpha-hairpin MxiH-like MxiH-like 001031982 e2g0uA1 002994727 Q79YY9_nD3 Q79YY9 Q79YY9_VIBPA VP0777 Basal-body rod modification protein FlgD 777 96-110,196-235 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001779558 e3c12A2 002994728 Q87LT6_nD4 Q87LT6 Q87LT6_VIBPA VP2525 2525 246-380 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001817769 e3jc9Cb2 002994729 Q87LT6_nD3 Q87LT6 Q87LT6_VIBPA VP2525 2525 176-225,381-405 f a.8 4177 4177.1 4177.1.1 alpha duplicates or obligate multimers BAR/IMD domain-like BAR/IMD domain-like BAR/IMD domain-like 000143840 e3ok8A1 002994730 Q87LT6_nD2 Q87LT6 Q87LT6_VIBPA VP2525 2525 61-175 f a.7 5060 5060.2 5060.2.1 alpha bundles V-type ATP synthase subunit C Toxin coregulated pilus biosynthesis protein E cytoplasmic domain Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 001035504 e2vmaA1 002994731 Q87LT6_nD1 Q87LT6 Q87LT6_VIBPA VP2525 2525 6-60 f a.11 3115 3115.1 3115.1.1 a+b two layers GP2-like RplX-like RplX-like 002741080 e6zj3Lg2 002994732 Q87LA6_nD1 Q87LA6 Q87LA6_VIBPA VP2706 2705 6-210 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002994733 Q87RK8_nD1 Q87RK8 Q87RK8_VIBPA VP0770 770 1-120 f a.7 603 603.5 603.5.1 alpha bundles STAT-like FlgN-like FlgN-like 000003798 e2fupA1 002994734 Q87TH6_nD1 Q87TH6 Q87TH6_VIBPA VP0093 Aromatic amino acid exporter 93 1-290 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002994735 Q87SR7_nD1 Q87SR7 Q87SR7_VIBPA VP0355 355 6-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001410173 e4hamA1 002994736 Q87SR7_nD2 Q87SR7 Q87SR7_VIBPA VP0355 355 76-220 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 002719401 e6za0B2 002994737 Q87K92_nD2 Q87K92 Q87K92_VIBPA VPA0006 ribA GTP cyclohydrolase-2 3085 166-365 f a.17 7580 7580.1 7580.1.1 a/b three-layered sandwiches RibA-like RibA-like RibA-like 000010863 e2bz1A1 002994738 Q87K92_nD1 Q87K92 Q87K92_VIBPA VPA0006 ribA GTP cyclohydrolase-2 3085 16-165 f a.14 4308 4308.1 4308.1.1 a+b complex topology YbiA-like YbiA-like YbiA-like 000007671 e2b3wA1 002994739 Q87J97_nD1 Q87J97 BCCT4_VIBPA VPA0356 Glycine betaine transporter 2 3435 41-535 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 001108697 e4c7rA1 002994740 Q87KG6_nD1 Q87KG6 Q87KG6_VIBPA VP3011 Glutathione hydrolase proenzyme 3010 41-585 f a.13 210 210.1 210.1.6 a+b four layers Ntn/PP2C Ntn Gamma-glutamyltranspeptidase-like 000087557 e2e0wB1 002994741 Q87LT4_nD1 Q87LT4 COAE_VIBPA VP2527 coaE Dephospho-CoA kinase 2527 1-200 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009556 e1vhtA1 002994742 Q87TI0_nD1 Q87TI0 Q87TI0_VIBPA VP0089 Phage holin family protein 89 26-65 f a.12 4121 4121.1 4121.1.1 a+b three layers CorA soluble domain-like CorA soluble domain-like CorA soluble domain-like 002764372 e7nh9D1 002994743 Q87TI0_nD2 Q87TI0 Q87TI0_VIBPA VP0089 Phage holin family protein 89 66-155 f a.7 3835 3835.1 3835.1.1 alpha bundles Type I hyperactive antifreeze protein Type I hyperactive antifreeze protein Type I hyperactive antifreeze protein 001283038 e4ke2B1 002994744 Q87PW2_nD2 Q87PW2 Q87PW2_VIBPA VP1388 Peptidase_S9 domain-containing protein 1388 146-245,391-405,471-480 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000001845 e2j73A1 002994745 Q87PW2_nD5 Q87PW2 Q87PW2_VIBPA VP1388 Peptidase_S9 domain-containing protein 1388 491-580 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 000001845 e2j73A1 002994746 Q87PW2_nD1 Q87PW2 Q87PW2_VIBPA VP1388 Peptidase_S9 domain-containing protein 1388 11-110 f a.6 130 130.1 130.1.1 alpha arrays LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif 001168191 e1zbuB4 002994747 Q87PW2_nD3 Q87PW2 Q87PW2_VIBPA VP1388 Peptidase_S9 domain-containing protein 1388 301-375 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001428810 e4v4eD3 002994748 Q87PW2_nD4 Q87PW2 Q87PW2_VIBPA VP1388 Peptidase_S9 domain-containing protein 1388 246-290,406-455,481-490 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 001877434 e5fieA1 002994749 Q87T73_nD1 Q87T73 Q87T73_VIBPA VP0197 197 11-390 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000096736 e1rkxD1 002994750 Q87K45_nD1 Q87K45 Q87K45_VIBPA VPA0053 3132 6-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002574266 e6nsmA1 002994751 Q87K45_nD2 Q87K45 Q87K45_VIBPA VPA0053 3132 76-195 f a.7 191 191.1 191.1.1 alpha bundles Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain Tetracyclin repressor-like, C-terminal domain 000359075 e3geuB2 002994752 Q87FP7_nD1 Q87FP7 Q87FP7_VIBPA VPA1631 4710 11-164 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000161689 e2hi2A1 002994753 Q87J02_nD1 Q87J02 KATG1_VIBPA VPA0453 katG1 Catalase-peroxidase 1 3532 16-430 f a.10 136 136.1 136.1.1 alpha complex topology Heme-dependent peroxidases Heme-dependent peroxidases Heme-dependent peroxidases 002142030 e5whsA1 002994754 Q87J02_nD2 Q87J02 KATG1_VIBPA VPA0453 katG1 Catalase-peroxidase 1 3532 436-720 f a.10 136 136.1 136.1.1 alpha complex topology Heme-dependent peroxidases Heme-dependent peroxidases Heme-dependent peroxidases 001489700 e3wxoA2 002994755 Q87RJ7_nD2 Q87RJ7 Q87RJ7_VIBPA VP0797 Cysteine synthase 797 151-320 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002482632 e1d6sB1 002994756 Q87RJ7_nD1 Q87RJ7 Q87RJ7_VIBPA VP0797 Cysteine synthase 797 6-150 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002723168 e6z4nAAA1 002994757 Q87I08_nD2 Q87I08 Q87I08_VIBPA VPA0798 YcxB domain-containing protein 3877 6-25,81-160 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 002713510 e6vguA3 002994758 Q87I08_nD1 Q87I08 Q87I08_VIBPA VPA0798 YcxB domain-containing protein 3877 31-80 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002625009 e6pajB2 002994759 Q87K44_nD1 Q87K44 Q87K44_VIBPA VPA0054 Hydrolase_4 domain-containing protein 3133 11-285 f a.17 7579 7579.1 7579.1.1 a/b three-layered sandwiches alpha/beta-Hydrolases alpha/beta-Hydrolases alpha/beta-Hydrolases 002086897 e5g59A1 002994760 Q87KF1_nD1 Q87KF1 Q87KF1_VIBPA VP3026 3025 1-205 f a.17 2003 2003.6 2003.6.1 a/b three-layered sandwiches Rossmann-like Ribokinase-like Ribokinase-like 000137363 e3k5wA1 002994761 Q87KF1_nD2 Q87KF1 Q87KF1_VIBPA VP3026 3025 221-440 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008717 e2tpsA1 002994762 Q87GV4_nD2 Q87GV4 Q87GV4_VIBPA VPA1211 SH3b domain-containing protein 4290 136-223 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001678534 e5boiA3 002994763 Q87GV4_nD1 Q87GV4 Q87GV4_VIBPA VPA1211 SH3b domain-containing protein 4290 61-135 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002582073 e6iluB2 002994764 Q87HE4_nD1 Q87HE4 Q87HE4_VIBPA VPA1021 Cystatin domain-containing protein 4100 46-125 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 002429403 e5zc1A1 002994765 Q87LT8_nD1 Q87LT8 Q87LT8_VIBPA VP2523 2523 36-139 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000161689 e2hi2A1 002994766 Q87JV3_nD1 Q87JV3 Q87JV3_VIBPA VPA0145 YkuD domain-containing protein 3224 26-165 f a.5 4091 4091.1 4091.1.1 beta complex topology L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like 002722109 e6xj7A2 002994767 Q87S03_nD1 Q87S03 Q87S03_VIBPA VP0621 621 26-325 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 001144516 e4ovyA1 002994768 Q87QY6_nD1 Q87QY6 Q87QY6_VIBPA VP1012 Cold shock-like protein CspD 1012 6-75 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001245216 e3uljB2 002994769 Q87S21_nD1 Q87S21 PEPB_VIBPA VP0603 pepB Peptidase B 603 6-100 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 002482428 e6ov8A1 002994770 Q87S21_nD2 Q87S21 PEPB_VIBPA VP0603 pepB Peptidase B 603 101-430 f a.17 2011 2011.1 2011.1.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Zn-dependent exopeptidases Zn-dependent exopeptidases 002482428 e6ov8A1 002994771 P22099_nD1 P22099 TRPE_VIBPA VP1956 trpE Anthranilate synthase component 1 1956 26-535 f a.15 880 880.1 880.1.1 a+b duplicates or obligate multimers ADC synthase ADC synthase ADC synthase 000081571 e1i7qC1 002994772 Q87J62_nD2 Q87J62 Q87J62_VIBPA VPA0391 VOC domain-containing protein 3470 66-135 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001833740 e3oajB2 002994773 Q87J62_nD1 Q87J62 Q87J62_VIBPA VPA0391 VOC domain-containing protein 3470 1-65 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 002508636 e6on3B2 002994774 Q87KU9_nD3 Q87KU9 Q87KU9_VIBPA VP2876 Cyclic nucleotide-binding domain-containing protein 2875 281-465 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001179387 e3k7dA3 002994775 Q87KU9_nD4 Q87KU9 Q87KU9_VIBPA VP2876 Cyclic nucleotide-binding domain-containing protein 2875 471-605 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002994776 Q87KU9_nD1 Q87KU9 Q87KU9_VIBPA VP2876 Cyclic nucleotide-binding domain-containing protein 2875 6-130 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002573886 e6uqfD1 002994777 Q87KU9_nD2 Q87KU9 Q87KU9_VIBPA VP2876 Cyclic nucleotide-binding domain-containing protein 2875 131-280 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000081412 e2o16B1 002994778 Q87HF3_nD1 Q87HF3 Q87HF3_VIBPA VPA1012 4091 46-125 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000051710 e1cnoG1 002994779 Q87TN3_nD1 Q87TN3 Q87TN3_VIBPA VP0036 ubiK Ubiquinone biosynthesis accessory factor UbiK 36 1-75 f a.7 1008 1008.1 1008.1.1 alpha bundles BRCC36 C-terminal helical domain BRCC36 C-terminal helical domain BRCC36 C-terminal helical domain 002511874 e6h3cB1 002994780 Q87FX2_nD1 Q87FX2 Q87FX2_VIBPA VPA1549 ATP synthase-coupling factor 6, mitochondrial 4628 1-95 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000140618 e3o2pE1 002994781 Q87M71_nD2 Q87M71 Q87M71_VIBPA VP2387 2387 66-255 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 001190017 e4gmkA3 002994782 Q87M71_nD1 Q87M71 Q87M71_VIBPA VP2387 2387 6-60 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002702298 e7cv0A1 002994783 Q87TC3_nD1 Q87TC3 Q87TC3_VIBPA VP0147 147 16-55 f a.19 376 376.1 376.1.1 few secondary structure elements RING/U-box-like RING/U-box-like RING/U-box 002761054 e7ejuB1 002994784 Q87TC3_nD2 Q87TC3 Q87TC3_VIBPA VP0147 147 56-240 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 000010655 e1qb7A1 002994785 Q87QX6_nD2 Q87QX6 GLGC1_VIBPA VP1023 glgC1 Glucose-1-phosphate adenylyltransferase 1 1023 291-405 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 002417050 e5w5rE1 002994786 Q87QX6_nD1 Q87QX6 GLGC1_VIBPA VP1023 glgC1 Glucose-1-phosphate adenylyltransferase 1 1023 1-290 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 002575748 e6si8C2 002994787 Q87MA1_nD1 Q87MA1 Q87MA1_VIBPA VP2356 2356 11-230 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001495364 e4uvmA1 002994788 Q87MA1_nD2 Q87MA1 Q87MA1_VIBPA VP2356 2356 236-450 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 000160547 e2gfpA2 002994789 Q87S82_nD1 Q87S82 Q87S82_VIBPA VP0542 Histidine kinase 542 21-100 f a.7 1134 1134.1 1134.1.1 alpha bundles C-terminal helical domain of alanine-tRNA ligase C-terminal helical domain of alanine-tRNA ligase Eukaryotic C-Ala helical domain 002429442 e6dxrB1 002994790 Q87KG0_nD1 Q87KG0 Q87KG0_VIBPA VP3017 3016 26-145 f a.7 633 633.10 633.10.1 alpha bundles Bromodomain-like IVS-encoded protein-like IVS-encoded protein-like 000003660 e2gscA1 002994791 P0A481_nD1 P0A481 RL20_VIBPA VP1282 rplT 50S ribosomal protein L20 1282 6-115 f a.6 143 143.2 143.2.1 alpha arrays PABP domain-like Ribosomal protein L20 Ribosomal protein L20 002617538 e6xywAq1 002994792 Q87H21_nD1 Q87H21 Q87H21_VIBPA VPA1144 Cytochrome c domain-containing protein 4223 31-145 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000051552 e1jdlA1 002994793 Q87H21_nD2 Q87H21 Q87H21_VIBPA VPA1144 Cytochrome c domain-containing protein 4223 151-220 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000003361 e1jmxA5 002994794 Q87SM0_nD1 Q87SM0 Q87SM0_VIBPA VP0402 402 6-470 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001320090 e4pu5A1 002994795 Q87RZ1_nD1 Q87RZ1 Q87RZ1_VIBPA VP0633 633 6-170 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002994796 Q87FZ4_nD1 Q87FZ4 Q87FZ4_VIBPA VPA1526 Cytochrome b562 family protein 4605 26-129 f a.7 601 601.2 601.2.1 alpha bundles Four-helical up-and-down bundle Cytochromes Cytochromes 002541226 e6r6oA1 002994797 Q87K25_nD3 Q87K25 Q87K25_VIBPA VPA0073 3152 161-260 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001942526 e5fhkD1 002994798 Q87K25_nD1 Q87K25 Q87K25_VIBPA VPA0073 3152 1-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001161108 e3szpA4 002994799 Q87K25_nD2 Q87K25 Q87K25_VIBPA VPA0073 3152 91-160,261-289 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002831958 e7trwA1 002994800 Q87L12_nD1 Q87L12 GPH_VIBPA VP2805 gph Phosphoglycolate phosphatase 2804 1-228 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000103500 e2hszB1 002994801 Q87SZ0_nD2 Q87SZ0 RPOA_VIBPA VP0282 rpoA DNA-directed RNA polymerase subunit alpha 282 6-50,181-245 f a.11 305 305.1 305.1.1 a+b two layers DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase 001224564 e4lk0B4 002994802 Q87SZ0_nD1 Q87SZ0 RPOA_VIBPA VP0282 rpoA DNA-directed RNA polymerase subunit alpha 282 51-180 f a.14 240 240.2 240.2.1 a+b complex topology Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit 000084025 e1bdfC2 002994803 Q87SZ0_nD3 Q87SZ0 RPOA_VIBPA VP0282 rpoA DNA-directed RNA polymerase subunit alpha 282 251-315 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 001682737 e2maxA1 002994804 Q87SR4_nD2 Q87SR4 Q87SR4_VIBPA VP0358 358 76-253 f a.17 2003 2003.1 2003.1.7 a/b three-layered sandwiches Rossmann-like Rossmann-related NagB/RpiA/CoA transferase-like 001190017 e4gmkA3 002994805 Q87SR4_nD1 Q87SR4 Q87SR4_VIBPA VP0358 358 6-70 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000147301 e2lnbA1 002994806 Q87SI9_nD1 Q87SI9 Q87SI9_VIBPA VP0434 DUF1043 family protein 434 31-80 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002330459 e6fkfp1 002994807 Q87GK9_nD1 Q87GK9 Q87GK9_VIBPA VPA1306 Metal ABC transporter permease 4385 6-265 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 000163034 e2nq2A1 002994808 Q87S92_nD1 Q87S92 Q87S92_VIBPA VP0532 murJ Probable lipid II flippase MurJ 532 1-235 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002388910 e6cc4A2 002994809 Q87S92_nD2 Q87S92 Q87S92_VIBPA VP0532 murJ Probable lipid II flippase MurJ 532 256-520 f a.7 1075 1075.5 1075.5.1 alpha bundles Type II ABC exporter transmembrane domain fold Multidrug and toxic compound extrusion (MATE) transporter Multidrug and toxic compound extrusion (MATE) transporter 002388910 e6cc4A2 002994810 Q87H88_nD4 Q87H88 Q87H88_VIBPA VPA1077 Lipoprotein 4156 236-315 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000144492 e3tdqA1 002994811 Q87H88_nD3 Q87H88 Q87H88_VIBPA VPA1077 Lipoprotein 4156 171-230 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000144492 e3tdqA1 002994812 Q87H88_nD1 Q87H88 Q87H88_VIBPA VPA1077 Lipoprotein 4156 36-105 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002036882 e5mp9L3 002994813 Q87H88_nD5 Q87H88 Q87H88_VIBPA VPA1077 Lipoprotein 4156 316-395 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000144492 e3tdqA1 002994814 Q87H88_nD2 Q87H88 Q87H88_VIBPA VPA1077 Lipoprotein 4156 106-170 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002643145 e6y96A1 002994815 Q87KY9_nD2 Q87KY9 Q87KY9_VIBPA VP2835 Acetyltransferase 2834 201-318 f a.12 5104 5104.1 5104.1.1 a+b three layers C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases 002388907 e6cc2A2 002994816 Q87KY9_nD1 Q87KY9 Q87KY9_VIBPA VP2835 Acetyltransferase 2834 1-200 f a.17 2006 2006.1 2006.1.2 a/b three-layered sandwiches HAD domain-like HAD domain-related DHH phosphoesterases 001891415 e5ghtA1 002994817 Q87GC8_nD1 Q87GC8 Q87GC8_VIBPA VPA1389 Type I-F CRISPR-associated protein Csy3 4468 1-345 f a.11 304 304.139 304.139.2 a+b two layers Alpha-beta plaits Cas7-related CRISPR-associated protein Cas7f/Csy3 002573194 e6v9qC1 002994818 Q79YW9_nD1 Q79YW9 Q79YW9_VIBPA VP2237 Flagellar biosynthetic protein FliR 2237 6-260 f a.7 5073 5073.1 5073.1.1 alpha bundles Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain-related Calcium ATPase transmembrane domain M 002784995 e7rd8A4 002994819 Q87FR5_nD1 Q87FR5 Q87FR5_VIBPA VPA1613 Gate domain-containing protein 4692 11-45,81-225 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 000185549 e3tijA1 002994820 Q87FW9_nD1 Q87FW9 Q87FW9_VIBPA VPA1559 bPH_1 domain-containing protein 4638 26-143 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 000000996 e3dcxA1 002994821 Q87NJ7_nD1 Q87NJ7 Q87NJ7_VIBPA VP1871 Nucleoside triphosphate hydrolase 1871 136-265 f a.6 7110 7110.1 7110.1.1 alpha arrays Helical insertion of YcjX stress protein Helical insertion of YcjX stress protein Helical insertion of YcjX stress protein 002577335 e6nz4B2 002994822 Q87NJ7_nD2 Q87NJ7 Q87NJ7_VIBPA VP1871 Nucleoside triphosphate hydrolase 1871 6-135,266-458 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002576220 e6nz4A1 002994823 Q87FU0_nD1 Q87FU0 Q87FU0_VIBPA VPA1588 Transporter 4667 1-70 f a.6 130 130.2 130.2.1 alpha arrays LEM/SAP HeH motif-like PF09905 (DUF2132) PF09905 (DUF2132) 000184691 e2jvwA1 002994824 Q87TL4_nD2 Q87TL4 Q87TL4_VIBPA VP0055 55 111-190 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002589357 e5vt0L3 002994825 Q87TL4_nD1 Q87TL4 Q87TL4_VIBPA VP0055 55 6-110 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 002817644 e7lq4A1 002994826 Q87HD5_nD3 Q87HD5 Q87HD5_VIBPA VPA1030 Type VI secretion system baseplate subunit TssF 4109 86-135,306-315,426-470 f a.1 1 1.16 1.16.1 beta barrels cradle loop barrel Baseplate wedge protein gp6 domain I Baseplate wedge protein gp6 domain I 001789804 e5hx2E4 002994827 Q87HD5_nD4 Q87HD5 Q87HD5_VIBPA VPA1030 Type VI secretion system baseplate subunit TssF 4109 316-425 f a.3 4081 4081.1 4081.1.1 beta sandwiches Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related 002512624 e6fpyA1 002994828 Q87HD5_nD2 Q87HD5 Q87HD5_VIBPA VPA1030 Type VI secretion system baseplate subunit TssF 4109 136-305 f a.3 4081 4081.1 4081.1.1 beta sandwiches Baculovirus p35 protein-related Baculovirus p35 protein-related Baculovirus p35 protein-related 002055582 e5mj6A2 002994829 Q87HD5_nD5 Q87HD5 Q87HD5_VIBPA VPA1030 Type VI secretion system baseplate subunit TssF 4109 486-605 f a.11 327 327.7 327.7.1 a+b two layers Alpha-lytic protease prodomain-like Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 000221616 e4hlbA1 002994830 Q87HD5_nD1 Q87HD5 Q87HD5_VIBPA VPA1030 Type VI secretion system baseplate subunit TssF 4109 6-65 f a.6 6027 6027.1 6027.1.1 alpha arrays Host-nuclease inhibitor protein Gam Host-nuclease inhibitor protein Gam Host-nuclease inhibitor protein Gam 001945601 e5mbvA1 002994831 Q87IB2_nD1 Q87IB2 Q87IB2_VIBPA VPA0694 BOF domain-containing protein 3773 21-110 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000000384 e1nnxA1 002994832 Q87PV5_nD1 Q87PV5 Q87PV5_VIBPA VP1396 CHAD domain-containing protein 1396 16-250 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001066839 e4g3aB1 002994833 Q87T32_nD2 Q87T32 Q87T32_VIBPA VP0238 Ribonuclease 238 211-400 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001498531 e3af5A4 002994834 Q87T32_nD1 Q87T32 Q87T32_VIBPA VP0238 Ribonuclease 238 1-210,401-449 f a.13 247 247.1 247.1.1 a+b four layers Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 002774031 e6v4xH2 002994835 Q87IG1_nD1 Q87IG1 Q87IG1_VIBPA VPA0645 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 3724 6-80 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 000007562 e1ghjA1 002994836 Q87IG1_nD2 Q87IG1 Q87IG1_VIBPA VPA0645 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 3724 132-165 f a.6 147 147.1 147.1.1 alpha arrays Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 000338927 e2eq9F1 002994837 Q87IG1_nD3 Q87IG1 Q87IG1_VIBPA VPA0645 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 3724 166-385 f a.14 323 323.1 323.1.1 a+b complex topology CoA-dependent acyltransferases CoA-dependent acyltransferases CoA-dependent acyltransferases 002771587 e6zzlA1 002994838 Q87L00_nD1 Q87L00 RSGA1_VIBPA VP2824 rsgA1 Small ribosomal subunit biogenesis GTPase RsgA 1 2823 31-105 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002080438 e5no3Z2 002994839 Q87L00_nD2 Q87L00 RSGA1_VIBPA VP2824 rsgA1 Small ribosomal subunit biogenesis GTPase RsgA 1 2823 106-345 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002506997 e6h4dA1 002994840 Q87SF4_nD1 Q87SF4 CARA_VIBPA VP0470 carA Carbamoyl-phosphate synthase small chain 470 6-150 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 000117875 e1a9xH2 002994841 Q87SF4_nD2 Q87SF4 CARA_VIBPA VP0470 carA Carbamoyl-phosphate synthase small chain 470 156-379 f a.17 2007 2007.1 2007.1.1 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 000104105 e1a9xH1 002994842 Q87KU8_nD1 Q87KU8 Q87KU8_VIBPA VP2877 2876 1-205 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 001501363 e4rg8A1 002994843 Q87MX3_nD3 Q87MX3 RNFB_VIBPA VP2103 rnfB Ion-translocating oxidoreductase complex subunit B 2103 96-165 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005481 e1gteA2 002994844 Q87MX3_nD1 Q87MX3 RNFB_VIBPA VP2103 rnfB Ion-translocating oxidoreductase complex subunit B 2103 1-25 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 001518894 e4wz7I1 002994845 Q87MX3_nD2 Q87MX3 RNFB_VIBPA VP2103 rnfB Ion-translocating oxidoreductase complex subunit B 2103 36-90 f a.19 3858 3858.1 3858.1.1 few secondary structure elements Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit 001322710 e4c1nC2 002994846 Q87KF6_nD3 Q87KF6 Q87KF6_VIBPA VP3021 3020 301-595 f a.15 283 283.1 283.1.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like Creatinase/aminopeptidase Creatinase/aminopeptidase 000167992 e3ctzA1 002994847 Q87KF6_nD1 Q87KF6 Q87KF6_VIBPA VP3021 3020 6-150 f a.18 2484 2484.3 2484.3.1 mixed a+b and a/b Ribonuclease H-like Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 000167993 e3ctzA2 002994848 Q87KF6_nD2 Q87KF6 Q87KF6_VIBPA VP3021 3020 156-300 f a.18 2484 2484.3 2484.3.1 mixed a+b and a/b Ribonuclease H-like Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 001548299 e4s2rP2 002994849 Q87RS2_nD1 Q87RS2 Q87RS2_VIBPA VP0705 705 16-225 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 000434629 e3tuiB1 002994850 Q87IH8_nD1 Q87IH8 Q87IH8_VIBPA VPA0628 Cytochrome bo(3) ubiquinol oxidase subunit 1 3707 1-660 f a.9 5038 5038.1 5038.1.1 alpha superhelices Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 002715167 e6wtiA1 002994851 Q87Q49_nD2 Q87Q49 Q87Q49_VIBPA VP1301 Exodeoxyribonuclease I 1301 216-350 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 002440131 e6ie6A1 002994852 Q87Q49_nD1 Q87Q49 Q87Q49_VIBPA VP1301 Exodeoxyribonuclease I 1301 6-215,351-470 f a.18 2484 2484.1 2484.1.1 mixed a+b and a/b Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like 000137783 e3hl8A1 002994853 Q87FJ8_nD1 Q87FJ8 Q87FJ8_VIBPA VPA1681 4760 1-140 f a.11 324 324.1 324.1.1 a+b two layers OsmC-like OsmC-like OsmC-like 000389241 e3lusB1 002994854 Q87FI2_nD3 Q87FI2 Q87FI2_VIBPA VPA1697 4776 226-270 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002565056 e6p7rA3 002994855 Q87FI2_nD2 Q87FI2 Q87FI2_VIBPA VPA1697 4776 171-225 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002080414 e5nlaA1 002994856 Q87FI2_nD1 Q87FI2 Q87FI2_VIBPA VPA1697 4776 16-170 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 000001294 e2arcA1 002994857 Q87QT7_nD1 Q87QT7 Q87QT7_VIBPA VP1062 cpoB Cell division coordinator CpoB 1062 46-110,131-245 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 000150575 e4f3vA1 002994858 Q87IK4_nD1 Q87IK4 Q87IK4_VIBPA VPA0602 3681 6-90 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002994859 Q87IK4_nD2 Q87IK4 Q87IK4_VIBPA VPA0602 3681 91-320 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002994860 Q87T15_nD1 Q87T15 RL31_VIBPA VP0255 rpmE 50S ribosomal protein L31 255 6-70 f a.19 4987 4987.1 4987.1.1 few secondary structure elements Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p 002408659 e5zet21 002994861 Q87G83_nD2 Q87G83 Q87G83_VIBPA VPA1434 4513 341-608 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001290282 e4mrpA1 002994862 Q87G83_nD1 Q87G83 Q87G83_VIBPA VPA1434 4513 1-340 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002797568 e7m33C2 002994863 Q87Q72_nD1 Q87Q72 Q87Q72_VIBPA VP1278 1278 1-140 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001720171 e5cl2A1 002994864 Q87Q72_nD2 Q87Q72 Q87Q72_VIBPA VP1278 1278 141-245 f a.11 241 241.15 241.15.1 a+b two layers Type III secretory system chaperone-like FP (Fbxo7/PI31) dimerization domain FP (Fbxo7/PI31) dimerization domain 001720172 e5cl2A2 002994865 Q87QQ7_nD2 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 181-215,236-275 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002816515 e7cz9B2 002994866 Q87QQ7_nD5 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 566-670 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001396261 e3w9iF5 002994867 Q87QQ7_nD8 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 511-560,866-1030 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002084608 e5khsB1 002994868 Q87QQ7_nD6 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 721-810 f a.11 304 304.28 304.28.2 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB TolC docking domain 002792356 e7b8sC4 002994869 Q87QQ7_nD7 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 671-720,811-865 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001396259 e3w9iF3 002994870 Q87QQ7_nD1 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 41-130 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002816520 e7cz9B7 002994871 Q87QQ7_nD3 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 131-180,276-330 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002502614 e6owsA8 002994872 Q87QQ7_nD4 Q87QQ7 Q87QQ7_VIBPA VP1092 Efflux pump membrane transporter 1092 1-35,331-505 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 001396264 e3w9iF8 002994873 Q87TL2_nD3 Q87TL2 Q87TL2_VIBPA VP0057 non-specific serine/threonine protein kinase 57 391-425 f a.7 164 164.1 164.1.1 alpha bundles Chorismate mutase II Chorismate mutase II Chorismate mutase II 000004050 e2d8dA1 002994874 Q87TL2_nD2 Q87TL2 Q87TL2_VIBPA VP0057 non-specific serine/threonine protein kinase 57 56-320 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 001423559 e4rerA1 002994875 Q87TL2_nD1 Q87TL2 Q87TL2_VIBPA VP0057 non-specific serine/threonine protein kinase 57 6-45 f a.14 206 206.1 206.1.1 a+b complex topology Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase 002739080 e6jxcA1 002994876 Q87R23_nD4 Q87R23 Q87R23_VIBPA VP0975 mfd Transcription-repair-coupling factor 975 476-990 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009733 e2eyqA5 002994877 Q87R23_nD3 Q87R23 Q87R23_VIBPA VP0975 mfd Transcription-repair-coupling factor 975 356-470 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002715894 e6x2nA7 002994878 Q87R23_nD5 Q87R23 Q87R23_VIBPA VP0975 mfd Transcription-repair-coupling factor 975 991-1150 f a.11 4354 4354.1 4354.1.1 a+b two layers TRCF domain TRCF domain TRCF domain 000005545 e2eyqA2 002994879 Q87R23_nD2 Q87R23 Q87R23_VIBPA VP0975 mfd Transcription-repair-coupling factor 975 1-130,216-355 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001544308 e1d2mA1 002994880 Q87R23_nD1 Q87R23 Q87R23_VIBPA VP0975 mfd Transcription-repair-coupling factor 975 131-215 f a.2 506 506.2 506.2.1 beta meanders Colicin E3 ribonuclease domain-like UvrB interaction domain UvrB interaction domain 000133732 e2eyqA3 002994881 Q87Q38_nD1 Q87Q38 BTUD_VIBPA VP1312 btuD Vitamin B12 import ATP-binding protein BtuD 1312 1-250 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000148528 e4dblC1 002994882 Q87IT6_nD2 Q87IT6 Q87IT6_VIBPA VPA0520 Bcr/CflA family efflux transporter 3599 196-390 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001680302 e4zp0A2 002994883 Q87IT6_nD1 Q87IT6 Q87IT6_VIBPA VPA0520 Bcr/CflA family efflux transporter 3599 6-195 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 001697376 e4yb9D1 002994884 Q87FM6_nD1 Q87FM6 Q87FM6_VIBPA VPA1653 4732 6-320 f a.7 5065 5065.1 5065.1.1 alpha bundles Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold Type II ABC importer transmembrane domain fold 001921594 e5b58A1 002994885 Q87PF6_nD2 Q87PF6 Q87PF6_VIBPA VP1546 Histidine kinase 1546 196-300 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002665647 e7cxmE5 002994886 Q87PF6_nD1 Q87PF6 Q87PF6_VIBPA VP1546 Histidine kinase 1546 1-195,301-393 f a.12 301 301.2 301.2.1 a+b three layers Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like 001176246 e3mcqA3 002994887 Q87IA6_nD3 Q87IA6 Q87IA6_VIBPA VPA0700 Fanconi-associated nuclease 3779 196-325 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001409358 e4r8aF2 002994888 Q87IA6_nD4 Q87IA6 Q87IA6_VIBPA VPA0700 Fanconi-associated nuclease 3779 326-535 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 002166053 e5y7qA3 002994889 Q87IA6_nD2 Q87IA6 Q87IA6_VIBPA VPA0700 Fanconi-associated nuclease 3779 96-140 f a.6 130 130.1 130.1.1 alpha arrays LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif 001409359 e4r8aF3 002994890 Q87IA6_nD1 Q87IA6 Q87IA6_VIBPA VPA0700 Fanconi-associated nuclease 3779 6-95,141-195 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002166052 e5y7qA2 002994891 Q87LE1_nD1 Q87LE1 Q87LE1_VIBPA VP2671 2670 1-90 f a.11 330 330.2 330.2.1 a+b two layers dsRBD-like Ribosome binding protein Y (YfiA homologue) Ribosome binding protein Y (YfiA homologue) 000153426 e4heiA1 002994892 Q87QE6_nD1 Q87QE6 Q87QE6_VIBPA VP1203 1203 31-145 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 002321478 e2ktsA1 002994893 Q87GN1_nD1 Q87GN1 Q87GN1_VIBPA VPA1284 Inner membrane protein YccF 4363 1-140 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 001411280 e1yuxA2 002994894 Q87GP2_nD1 Q87GP2 Q87GP2_VIBPA VPA1273 CBM20 domain-containing protein 4352 1-98 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001290945 e4pyhA1 002994895 Q87FG4_nD1 Q87FG4 Q87FG4_VIBPA VPA1715 4794 1-340 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002145196 e4pl0B2 002994896 Q87FG4_nD2 Q87FG4 Q87FG4_VIBPA VPA1715 4794 346-615 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000985775 e4a82C2 002994897 Q87JQ3_nD1 Q87JQ3 Q87JQ3_VIBPA VPA0195 Nucleoside permease 3274 1-400 f a.10 3415 3415.1 3415.1.1 alpha complex topology Concentrative nucleoside transporter Concentrative nucleoside transporter Concentrative nucleoside transporter 002649753 e6kswB1 002994898 Q87R40_nD1 Q87R40 Q87R40_VIBPA VP0958 958 1-135 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 001087106 e4gqyA1 002994899 Q87L48_nD1 Q87L48 Q87L48_VIBPA VP2767 2766 6-170 f a.17 2007 2007.1 2007.1.6 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Aminoacid dehydrogenase-like, N-terminal domain 002503524 e2dvmC1 002994900 Q87L48_nD2 Q87L48 Q87L48_VIBPA VP2767 2766 171-425 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002720138 e6znjA1 002994901 Q87MJ2_nD1 Q87MJ2 Q87MJ2_VIBPA VP2263 DUF2919 domain-containing protein 2263 6-150 f a.19 174 174.1 174.1.1 few secondary structure elements Tetraspanin transmembrane domain Tetraspanin transmembrane domain Tetraspanin transmembrane domain 002715279 e6wvdA2 002994902 Q87JN3_nD1 Q87JN3 Q87JN3_VIBPA VPA0215 Antibiotic biosynthesis monooxygenase 3294 1-100 f a.11 304 304.4 304.4.1 a+b two layers Alpha-beta plaits Dimeric alpha+beta barrel Dimeric alpha+beta barrel 000356036 e3bxvA1 002994903 Q87NY7_nD1 Q87NY7 Q87NY7_VIBPA VP1731 Biliverdin-producing heme oxygenase 1731 1-220 f a.7 150 150.1 150.1.2 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Heme oxygenase/Ribonucleotide reductase 000168212 e3ddeA1 002994904 Q87T62_nD2 Q87T62 Q87T62_VIBPA VP0208 208 166-350 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 002677047 e6zmzAAA2 002994905 Q87T62_nD1 Q87T62 Q87T62_VIBPA VP0208 208 1-165,351-368 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001498412 e4x7pA2 002994906 Q87NU3_nD1 Q87NU3 Q87NU3_VIBPA VP1775 1775 11-400 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002994907 Q87T40_nD1 Q87T40 Q87T40_VIBPA VP0230 230 1-195,391-405 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002994908 Q87T40_nD2 Q87T40 Q87T40_VIBPA VP0230 230 196-390 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717312 e1c50A2 002994909 Q87KZ9_nD1 Q87KZ9 PSD_VIBPA VP2825 psd Phosphatidylserine decarboxylase proenzyme 2824 16-44 f 002994910 Q87KZ9_nD2 Q87KZ9 PSD_VIBPA VP2825 psd Phosphatidylserine decarboxylase proenzyme 2824 81-285 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 000085243 e1glbF1 002994911 Q87T37_nD1 Q87T37 Q87T37_VIBPA VP0233 Hydrolase of the HAD superfamily 233 1-220 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000169819 e2w4mA1 002994912 Q87QV5_nD1 Q87QV5 CMOB_VIBPA VP1044 cmoB tRNA U34 carboxymethyltransferase 1044 1-323 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 001349699 e4qnuF1 002994913 Q87KA0_nD1 Q87KA0 Q87KA0_VIBPA VP3078 3077 1-255 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002448312 e6iubA1 002994914 Q87KK4_nD1 Q87KK4 Q87KK4_VIBPA VP2973 Homoserine/homoserine lactone efflux protein 2972 6-205 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002817096 e7l17A1 002994915 Q87G17_nD2 Q87G17 Q87G17_VIBPA VPA1500 HTH cro/C1-type domain-containing protein 4579 86-110 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001793543 e4yarA4 002994916 Q87G17_nD1 Q87G17 Q87G17_VIBPA VPA1500 HTH cro/C1-type domain-containing protein 4579 6-85 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001145736 e4o8bA1 002994917 Q87MB3_nD1 Q87MB3 Q87MB3_VIBPA VP2343 DUF2789 domain-containing protein 2343 6-75 f a.6 3099 3099.1 3099.1.1 alpha arrays Uncharacterized protein CV0237 Uncharacterized protein CV0237 Uncharacterized protein CV0237 000119230 e2kp6A1 002994918 Q87T56_nD1 Q87T56 HLDD_VIBPA VP0214 hldD ADP-L-glycero-D-manno-heptose-6-epimerase 214 1-313 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000385967 e2x6tG1 002994919 Q87T31_nD1 Q87T31 TPIS_VIBPA VP0239 tpiA Triosephosphate isomerase 239 1-255 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008741 e1aw1A1 002994920 Q87Q22_nD2 Q87Q22 Q87Q22_VIBPA VP1328 1328 76-215 f a.7 628 628.1 628.1.1 alpha bundles Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain Fatty acid responsive transcription factor FadR, C-terminal domain 001893733 e5tpmA1 002994921 Q87Q22_nD1 Q87Q22 Q87Q22_VIBPA VP1328 1328 1-75 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001893568 e5kvrA1 002994922 Q87RV3_nD1 Q87RV3 XGPT_VIBPA VP0673 gpt Xanthine-guanine phosphoribosyltransferase 673 6-150 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 000110313 e1a97B1 002994923 Q87N27_nD1 Q87N27 Q87N27_VIBPA VP2048 DNA polymerase III subunit delta' 2048 6-170 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001002400 e1a5tA5 002994924 Q87N27_nD2 Q87N27 Q87N27_VIBPA VP2048 DNA polymerase III subunit delta' 2048 171-205 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001002401 e1a5tA4 002994925 Q87N27_nD3 Q87N27 Q87N27_VIBPA VP2048 DNA polymerase III subunit delta' 2048 206-320 f a.6 138 138.1 138.1.1 alpha arrays DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain 001773078 e1xxhE3 002994926 Q87KR1_nD1 Q87KR1 Q87KR1_VIBPA VP2915 UDG domain-containing protein 2914 1-190 f a.17 7569 7569.1 7569.1.1 a/b three-layered sandwiches Uracil-DNA glycosylase-like Uracil-DNA glycosylase-like Uracil-DNA glycosylase-like 000370321 e3ikbB1 002994927 Q87PQ8_nD1 Q87PQ8 Q87PQ8_VIBPA VP1443 TerB domain-containing protein 1443 41-164 f a.6 4198 4198.1 4198.1.1 alpha arrays TerB-like TerB-like TerB-like 000002945 e2h5nA1 002994928 Q87NJ2_nD4 Q87NJ2 Q87NJ2_VIBPA VP1876 histidine kinase 1876 436-565 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001566347 e4qpjC1 002994929 Q87NJ2_nD3 Q87NJ2 Q87NJ2_VIBPA VP1876 histidine kinase 1876 271-425 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002568309 e6qrjA2 002994930 Q87NJ2_nD2 Q87NJ2 Q87NJ2_VIBPA VP1876 histidine kinase 1876 216-270 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 002708987 e6lgqC1 002994931 Q87NJ2_nD1 Q87NJ2 Q87NJ2_VIBPA VP1876 histidine kinase 1876 11-195 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001007429 e4g3kA1 002994932 Q87GE3_nD4 Q87GE3 Q87GE3_VIBPA VPA1373 Type III secretion system effector 4452 171-180,216-230,256-270,336-380,526-575,621-655,681-815 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001298172 e4pr7A1 002994933 Q87GE3_nD3 Q87GE3 Q87GE3_VIBPA VPA1373 Type III secretion system effector 4452 381-525 f a.7 192 192.5 192.5.1 alpha bundles Long alpha-hairpin HR1 repeat HR1 repeat 000060610 e2rmkB1 002994934 Q87GE3_nD1 Q87GE3 Q87GE3_VIBPA VPA1373 Type III secretion system effector 4452 61-170,276-335 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002388286 e6bfiB6 002994935 Q87GE3_nD5 Q87GE3 Q87GE3_VIBPA VPA1373 Type III secretion system effector 4452 821-845 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002388285 e6bfiB5 002994936 Q87GE3_nD2 Q87GE3 Q87GE3_VIBPA VPA1373 Type III secretion system effector 4452 181-255,656-680 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000141724 e2x27X1 002994937 Q87TD2_nD1 Q87TD2 Q87TD2_VIBPA VP0138 Type II secretion system protein I 138 1-109 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000006683 e3ci0I1 002994938 Q87JM9_nD1 Q87JM9 Q87JM9_VIBPA VPA0219 DUF2541 family protein 3298 26-140 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001068680 e4kncB2 002994939 Q87HY7_nD1 Q87HY7 Q87HY7_VIBPA VPA0819 3898 56-300 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002994940 Q87RN8_nD2 Q87RN8 KPRS_VIBPA VP0739 prs Ribose-phosphate pyrophosphokinase 739 151-305 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 002441983 e6asvA2 002994941 Q87RN8_nD1 Q87RN8 KPRS_VIBPA VP0739 prs Ribose-phosphate pyrophosphokinase 739 6-150 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 000168100 e3dahA1 002994942 Q87IP1_nD1 Q87IP1 Q87IP1_VIBPA VPA0565 3644 31-373 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 002756416 e7cdyA1 002994943 Q87G86_nD1 Q87G86 Q87G86_VIBPA VPA1431 4510 1-130 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002568350 e6s2jA1 002994944 Q87G86_nD2 Q87G86 Q87G86_VIBPA VPA1431 4510 136-215 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 002568351 e6s2jA2 002994945 Q87RM3_nD1 Q87RM3 Q87RM3_VIBPA VP0755 beta-N-acetylhexosaminidase 755 26-190 f a.3 11 11.1 11.1.5 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f 000001887 e1qbaA2 002994946 Q87RM3_nD2 Q87RM3 Q87RM3_VIBPA VP0755 beta-N-acetylhexosaminidase 755 196-330 f a.18 2498 2498.2 2498.2.1 mixed a+b and a/b Zincin-like beta-N-acetylhexosaminidase-like domain beta-N-acetylhexosaminidase-like domain 000011498 e1qbaA4 002994947 Q87RM3_nD4 Q87RM3 Q87RM3_VIBPA VP0755 beta-N-acetylhexosaminidase 755 821-883 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002526347 e6q63A3 002994948 Q87RM3_nD3 Q87RM3 Q87RM3_VIBPA VP0755 beta-N-acetylhexosaminidase 755 331-840 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000008884 e1qbaA3 002994949 Q87IQ6_nD1 Q87IQ6 Q87IQ6_VIBPA VPA0550 Transcriptional regulator 3629 1-70,96-165 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002063586 e5k7vC2 002994950 Q87IQ6_nD2 Q87IQ6 Q87IQ6_VIBPA VPA0550 Transcriptional regulator 3629 71-95 f a.6 4198 4198.1 4198.1.1 alpha arrays TerB-like TerB-like TerB-like 002106889 e5mlfF1 002994951 Q87TD6_nD2 Q87TD6 Q87TD6_VIBPA VP0134 Type II secretion system protein E 134 81-500 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001891751 e5it5A1 002994952 Q87TD6_nD1 Q87TD6 Q87TD6_VIBPA VP0134 Type II secretion system protein E 134 11-75 f a.11 327 327.8 327.8.1 a+b two layers Alpha-lytic protease prodomain-like GSPII protein E N-terminal domain-like GSPII protein E N-terminal domain-like 000070691 e2bh1Y1 002994953 Q87GD7_nD1 Q87GD7 Q87GD7_VIBPA VPA1380 4459 51-290 f a.17 7575 7575.1 7575.1.1 a/b three-layered sandwiches Caspase-like Caspase-like Caspase-like 002754181 e7d5yA1 002994954 Q87GH5_nD1 Q87GH5 Q87GH5_VIBPA VPA1341 4420 6-44 f a.7 3754 3754.1 3754.1.1 alpha bundles Bacterial cell wall synthesis membrane enzyme MraY-related Bacterial cell wall synthesis membrane enzyme MraY-related Bacterial cell wall synthesis membrane enzyme MraY-related 002165185 e5o5eA1 002994955 Q87GH5_nD2 Q87GH5 Q87GH5_VIBPA VPA1341 4420 56-225 f a.7 3877 3877.1 3877.1.1 alpha bundles Membrane protein insertase YidC-related Membrane protein insertase YidC-related Membrane protein insertase YidC 002819444 e6y86A2 002994956 Q87SD7_nD3 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 131-270 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002721694 e7a6pA1 002994957 Q87SD7_nD7 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 651-783 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003718 e2a0bA1 002994958 Q87SD7_nD4 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 286-340 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 000004346 e2c2aA1 002994959 Q87SD7_nD6 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 516-645 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002081078 e5kbxB1 002994960 Q87SD7_nD1 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 6-95 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002566250 e6pwpF1 002994961 Q87SD7_nD2 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 96-130 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 002085430 e5nugB10 002994962 Q87SD7_nD5 Q87SD7 Q87SD7_VIBPA VP0487 Aerobic respiration control sensor protein 487 341-510 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001481140 e4pl9A1 002994963 Q87TK5_nD1 Q87TK5 Q87TK5_VIBPA VP0064 64 11-455 f a.10 3355 3355.1 3355.1.1 alpha complex topology dicarboxylate/sodium symporter dicarboxylate/sodium symporter dicarboxylate/sodium symporter 002075440 e5ul7B1 002994964 Q87NK2_nD1 Q87NK2 Q87NK2_VIBPA VP1866 DUF2947 domain-containing protein 1866 31-155 f a.12 3425 3425.1 3425.1.1 a+b three layers Two-component system yycF/yycG regulatory protein yycH-like YycH N-terminal domain YycH N-terminal domain 000185950 e2fgtA1 002994965 Q87IQ7_nD1 Q87IQ7 Q87IQ7_VIBPA VPA0549 GST N-terminal domain-containing protein 3628 11-119 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 000116765 e1z9hB2 002994966 Q87NI7_nD3 Q87NI7 Q87NI7_VIBPA VP1881 EAL domain-containing protein 1881 151-165,326-345 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000006843 e2hjeA1 002994967 Q87NI7_nD4 Q87NI7 Q87NI7_VIBPA VP1881 EAL domain-containing protein 1881 126-145,346-570 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 000412323 e3pjuA1 002994968 Q87NI7_nD1 Q87NI7 Q87NI7_VIBPA VP1881 EAL domain-containing protein 1881 1-115 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000149512 e3rjpA1 002994969 Q87NI7_nD2 Q87NI7 Q87NI7_VIBPA VP1881 EAL domain-containing protein 1881 166-325 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002472915 e6d8vA1 002994970 Q87MA9_nD1 Q87MA9 NQRD_VIBPA VP2348 nqrD Na(+)-translocating NADH-quinone reductase subunit D 2348 11-205 f a.10 3921 3921.1 3921.1.1 alpha complex topology Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D Na(+)-translocating NADH-quinone reductase subunit D 001447932 e4p6vD1 002994971 Q87QA1_nD2 Q87QA1 Q87QA1_VIBPA VP1249 1249 321-570 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000985775 e4a82C2 002994972 Q87QA1_nD1 Q87QA1 Q87QA1_VIBPA VP1249 1249 1-320 f a.7 1075 1075.4 1075.4.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold Type I ABC exporter transmembrane domain fold 002145196 e4pl0B2 002994973 Q87MA0_nD1 Q87MA0 Q87MA0_VIBPA VP2357 2357 1-210 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001164611 e2q1zB3 002994974 Q87JR8_nD1 Q87JR8 Q87JR8_VIBPA VPA0180 3259 1-305,326-460 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002714588 e6wgdB1 002994975 Q87PG2_nD2 Q87PG2 Q87PG2_VIBPA VP1540 CcoH 1540 56-155 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000032434 e1bmwA1 002994976 Q87PG2_nD1 Q87PG2 Q87PG2_VIBPA VP1540 CcoH 1540 6-35 f a.8 7002 7002.1 7002.1.1 alpha duplicates or obligate multimers TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B TM trimerization region of envelope glycoprotein B 002423082 e5v2sA4 002994977 Q87NE6_nD1 Q87NE6 Q87NE6_VIBPA VP1922 3-demethylubiquinone-9 3-methyltransferase 1922 1-58 f a.8 165 165.1 165.1.1 alpha duplicates or obligate multimers Dimerisation interlock SinR repressor dimerisation domain-like SinR repressor dimerisation domain-like 002132818 e5tn2C1 002994978 Q87RB8_nD2 Q87RB8 FOLD_VIBPA VP0879 folD Bifunctional protein FolD 879 121-280 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002331918 e6debB2 002994979 Q87RB8_nD1 Q87RB8 FOLD_VIBPA VP0879 folD Bifunctional protein FolD 879 6-120 f a.17 2007 2007.1 2007.1.6 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Aminoacid dehydrogenase-like, N-terminal domain 000433013 e4a5oB2 002994980 Q87ME9_nD1 Q87ME9 LPXA_VIBPA VP2306 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2306 6-260 f a.4 208 208.1 208.1.1 beta duplicates or obligate multimers Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 000081173 e2qiaA1 002994981 Q87L60_nD1 Q87L60 Q87L60_VIBPA VP2752 2751 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001663571 e4x6gD2 002994982 Q87L60_nD2 Q87L60 Q87L60_VIBPA VP2752 2751 81-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002994983 Q87I56_nD1 Q87I56 Q87I56_VIBPA VPA0750 3829 6-295 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002994984 Q87GX3_nD1 Q87GX3 Q87GX3_VIBPA VPA1192 4271 1-154 f a.12 2492 2492.1 2492.1.1 a+b three layers Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like 000169960 e2w4lA1 002994985 Q87PH2_nD1 Q87PH2 Q87PH2_VIBPA VP1530 Proline and glycine rich transmembrane protein gene in bax 1530 16-240 f a.10 5076 5076.2 5076.2.1 alpha complex topology Mitochondrial ADP/ATP carrier-like Putative sulfate permease CysZ Putative sulfate permease CysZ 001146560 e3tx3A1 002994986 Q87KB8_nD1 Q87KB8 Q87KB8_VIBPA VP3059 3058 1-90 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001016357 e2lvwB1 002994987 Q87JT5_nD1 Q87JT5 Q87JT5_VIBPA VPA0163 3242 1-244 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002415226 e6hzmB2 002994988 Q87HH0_nD2 Q87HH0 Q87HH0_VIBPA VPA0995 CHAD domain-containing protein 4074 171-310 f a.7 601 601.33 601.33.1 alpha bundles Four-helical up-and-down bundle CHAD domain CHAD domain 002503462 e6rn5A1 002994989 Q87HH0_nD1 Q87HH0 Q87HH0_VIBPA VPA0995 CHAD domain-containing protein 4074 11-170 f a.7 601 601.33 601.33.1 alpha bundles Four-helical up-and-down bundle CHAD domain CHAD domain 002492495 e6qv5A2 002994990 Q87T04_nD1 Q87T04 RS17_VIBPA VP0266 rpsQ 30S ribosomal protein S17 266 6-80 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001555442 e1n32Q1 002994991 Q87M58_nD1 Q87M58 Q87M58_VIBPA VP2400 UDP-glucose 4-epimerase 2400 1-335 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 000169313 e3enkA1 002994992 Q87KP4_nD1 Q87KP4 Q87KP4_VIBPA VP2933 N-acetyltransferase domain-containing protein 2932 6-145 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000011053 e1m4iA1 002994993 Q87PT6_nD4 Q87PT6 Q87PT6_VIBPA VP1415 Tox-PAAR-like domain-containing protein 1415 306-390,441-460 f a.6 5000 5000.4 5000.4.1 alpha arrays Toxins' membrane translocation domains delta-Endotoxin (insectocide), N-terminal domain delta-Endotoxin (insectocide), N-terminal domain 001680528 e3x0uA1 002994994 Q87PT6_nD3 Q87PT6 Q87PT6_VIBPA VP1415 Tox-PAAR-like domain-containing protein 1415 236-295,391-440 f a.6 4156 4156.1 4156.1.1 alpha arrays Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like 001874720 e4u4cA7 002994995 Q87PT6_nD1 Q87PT6 Q87PT6_VIBPA VP1415 Tox-PAAR-like domain-containing protein 1415 26-150 f a.1 3174 3174.3 3174.3.1 beta barrels Ribosomal protein L14-like PAAR-repeat protein PAAR-repeat protein 001101701 e4jiwP1 002994996 Q87PT6_nD5 Q87PT6 Q87PT6_VIBPA VP1415 Tox-PAAR-like domain-containing protein 1415 526-690 f a.7 601 601.19 601.19.1 alpha bundles Four-helical up-and-down bundle Apolipoprotein Apolipoprotein 001758637 e2l7bA1 002994997 Q87PT6_nD2 Q87PT6 Q87PT6_VIBPA VP1415 Tox-PAAR-like domain-containing protein 1415 161-225,471-485 f a.3 11 11.1 11.1.4 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like 002474087 e6hifg1 002994998 Q87IQ5_nD1 Q87IQ5 Q87IQ5_VIBPA VPA0551 YaeQ family protein 3630 6-180 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 002807753 e7tcbB1 002994999 Q87HR6_nD1 Q87HR6 Q87HR6_VIBPA VPA0889 S-adenosylhomocysteine hydrolase 3969 1-55 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002808445 e7vjoA1 002995000 Q87HR6_nD2 Q87HR6 Q87HR6_VIBPA VPA0889 S-adenosylhomocysteine hydrolase 3969 56-100 f a.11 295 295.1 295.1.1 a+b two layers ssDNA-binding transcriptional regulator domain-like ssDNA-binding transcriptional regulator domain ssDNA-binding transcriptional regulator domain 000069908 e1pcfC1 002995001 Q87HK9_nD1 Q87HK9 Q87HK9_VIBPA VPA0954 4033 21-70,91-435 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 001841138 e5azsC1 002995002 Q87QS6_nD1 Q87QS6 Q87QS6_VIBPA VP1073 1073 6-70 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 000148652 e3vk0A1 002995003 Q87IK7_nD3 Q87IK7 Q87IK7_VIBPA VPA0599 3678 171-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002995004 Q87IK7_nD2 Q87IK7 Q87IK7_VIBPA VPA0599 3678 106-170,271-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002141460 e5y2vA1 002995005 Q87IK7_nD1 Q87IK7 Q87IK7_VIBPA VPA0599 3678 16-105 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002995006 Q87JJ6_nD2 Q87JJ6 Q87JJ6_VIBPA VPA0253 3332 226-485 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002445530 e6gs1A1 002995007 Q87JJ6_nD1 Q87JJ6 Q87JJ6_VIBPA VPA0253 3332 1-225 f a.10 5050 5050.1 5050.1.1 alpha complex topology Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter Major facilitator superfamily (MFS) general substrate transporter 002445531 e6gs1A2 002995008 Q87HS8_nD5 Q87HS8 Q87HS8_VIBPA VPA0878 Diguanylate cyclase 3957 481-650 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002995009 Q87HS8_nD2 Q87HS8 Q87HS8_VIBPA VPA0878 Diguanylate cyclase 3957 176-235 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 001392671 e4i5sB4 002995010 Q87HS8_nD1 Q87HS8 Q87HS8_VIBPA VPA0878 Diguanylate cyclase 3957 6-175 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001283430 e4onxF1 002995011 Q87HS8_nD4 Q87HS8 Q87HS8_VIBPA VPA0878 Diguanylate cyclase 3957 356-480 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002539974 e6hmjA1 002995012 Q87HS8_nD3 Q87HS8 Q87HS8_VIBPA VPA0878 Diguanylate cyclase 3957 236-355 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 001018828 e4hh3A1 002995013 Q87GA4_nD1 Q87GA4 Q87GA4_VIBPA VPA1413 VanZ domain-containing protein 4492 6-133 f a.7 5064 5064.1 5064.1.1 alpha bundles Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL 002568683 e6kmwaL1 002995014 Q87GP4_nD1 Q87GP4 Q87GP4_VIBPA VPA1271 Thiol:disulfide interchange protein 4350 16-199 f a.12 2485 2485.1 2485.1.1 a+b three layers Thioredoxin-like Thioredoxin-like Thioredoxin-like 002797418 e7luhA1 002995015 Q87GF7_nD1 Q87GF7 Q87GF7_VIBPA VPA1359 DUF2075 domain-containing protein 4438 46-130 f a.6 532 532.2 532.2.1 alpha arrays Type III secretion system domain-like Type III secretion system domains Type III secretion system domains 001697185 e5c9eA1 002995016 Q87G77_nD1 Q87G77 Q87G77_VIBPA VPA1440 OmpA family protein 4519 46-175 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002995017 Q87G77_nD2 Q87G77 Q87G77_VIBPA VPA1440 OmpA family protein 4519 26-45,181-295 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001945661 e5u1hC1 002995018 Q87KH0_nD4 Q87KH0 Q87KH0_VIBPA VP3007 DNA helicase 3006 536-605 f a.6 102 102.1 102.1.1 alpha arrays HhH/H2TH SAM/DNA-glycosylase SAM domain-like 000002976 e2e1fA1 002995019 Q87KH0_nD3 Q87KH0 Q87KH0_VIBPA VP3007 DNA helicase 3006 411-515 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002625 e1oywA1 002995020 Q87KH0_nD2 Q87KH0 Q87KH0_VIBPA VP3007 DNA helicase 3006 211-410 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001137367 e4cgzA3 002995021 Q87KH0_nD1 Q87KH0 Q87KH0_VIBPA VP3007 DNA helicase 3006 6-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001555872 e4q47A1 002995022 P40605_nD4 P40605 HFLK_VIBPA VP2815 hflK Protein HflK 2814 306-330 f a.15 5094 5094.1 5094.1.1 a+b duplicates or obligate multimers OmpH-like OmpH-like OmpH-like 001030831 e4kqtA1 002995023 P40605_nD3 P40605 HFLK_VIBPA VP2815 hflK Protein HflK 2814 271-305 f a.21 3297 3297.1 3297.1.1 extended segments Helical hairpin in Ndc80 Helical hairpin in Ndc80 Helical hairpin in Ndc80 001546235 e4r3zA1 002995024 P40605_nD2 P40605 HFLK_VIBPA VP2815 hflK Protein HflK 2814 246-270 f a.21 3462 3462.1 3462.1.1 extended segments V-type proton ATPase subunit G V-type proton ATPase subunit G V-type proton ATPase subunit G 002537583 e6qumI1 002995025 P40605_nD1 P40605 HFLK_VIBPA VP2815 hflK Protein HflK 2814 91-245 f a.11 230 230.5 230.5.1 a+b two layers T-fold Band 7/SPFH domain Band 7/SPFH domain 000996940 e3bk6B1 002995026 Q87FP3_nD2 Q87FP3 Q87FP3_VIBPA VPA1635 4714 116-425 f a.17 7577 7577.1 7577.1.1 a/b three-layered sandwiches PLP-dependent transferases PLP-dependent transferases PLP-dependent transferases 001180407 e2vycA5 002995027 Q87FP3_nD1 Q87FP3 Q87FP3_VIBPA VPA1635 4714 1-115 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010047 e1c4kA3 002995028 Q87FP3_nD3 Q87FP3 Q87FP3_VIBPA VPA1635 4714 426-575 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 000005569 e1c4kA2 002995029 Q87FP3_nD4 Q87FP3 Q87FP3_VIBPA VPA1635 4714 576-725 f a.11 275 275.1 275.1.1 a+b two layers MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 000004982 e1c4kA1 002995030 Q87IA1_nD2 Q87IA1 Q87IA1_VIBPA VPA0705 3784 31-165 f a.7 633 633.5 633.5.1 alpha bundles Bromodomain-like LemA-like LemA-like 000003644 e2etdA1 002995031 Q87IA1_nD1 Q87IA1 Q87IA1_VIBPA VPA0705 3784 1-30,166-180 f a.21 5046 5046.1 5046.1.1 extended segments F-type ATP synthase subunit b F-type ATP synthase subunit b F-type ATP synthase subunit b 002824827 e7p3np1 002995032 Q87GF3_nD1 Q87GF3 Q87GF3_VIBPA VPA1363 4442 56-85 f a.14 279 279.1 279.1.1 a+b complex topology LDH C-terminal domain-like LDH C-terminal domain-like LDH C-terminal domain-like 001853452 e1smkE1 002995033 Q87NW9_nD1 Q87NW9 Q87NW9_VIBPA VP1749 DUF4065 domain-containing protein 1749 36-90 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 001147599 e4lfuA2 002995034 Q87ST8_nD1 Q87ST8 APAH_VIBPA VP0334 apaH Bis(5'-nucleosyl)-tetraphosphatase, symmetrical 334 1-265 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 000162766 e2dfjA1 002995035 Q87LG0_nD1 Q87LG0 ARCA_VIBPA VP2652 arcA Arginine deiminase 2651 1-405 f a.15 232 232.1 232.1.1 a+b duplicates or obligate multimers Pentein Pentein Pentein 000081327 e2a9gA1 002995036 Q87NJ3_nD1 Q87NJ3 Q87NJ3_VIBPA VP1875 aminodeoxychorismate synthase 1875 6-454 f a.15 880 880.1 880.1.1 a+b duplicates or obligate multimers ADC synthase ADC synthase ADC synthase 001843182 e5kckA1 002995037 Q87RT9_nD1 Q87RT9 Q87RT9_VIBPA VP0687 687 1-294 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 000057144 e1rqiA1 002995038 Q87IL3_nD1 Q87IL3 Q87IL3_VIBPA VPA0593 3672 11-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002104055 e5whmA2 002995039 Q87IL3_nD2 Q87IL3 Q87IL3_VIBPA VPA0593 3672 1-10,81-244 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000166471 e3bjnA1 002995040 Q87QX2_nD1 Q87QX2 Q87QX2_VIBPA VP1027 TVP38/TMEM64 family membrane protein 1027 31-220 f a.7 5001 5001.1 5001.1.1 alpha bundles Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 002557446 e6su3A1 002995041 Q87QS3_nD1 Q87QS3 Q87QS3_VIBPA VP1076 Helix-turn-helix domain-containing protein 1076 26-120 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001284299 e4lmyB1 002995042 Q87G31_nD2 Q87G31 Q87G31_VIBPA VPA1486 4565 51-60,126-215 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005481 e1gteA2 002995043 Q87G31_nD1 Q87G31 Q87G31_VIBPA VPA1486 4565 61-125 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000067069 e2fjeB1 002995044 Q87LL6_nD3 Q87LL6 ARGP_VIBPA VP2595 argP HTH-type transcriptional regulator ArgP 2594 166-265 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001949017 e5mmhA1 002995045 Q87LL6_nD1 Q87LL6 ARGP_VIBPA VP2595 argP HTH-type transcriptional regulator ArgP 2594 6-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002674116 e6xtuB3 002995046 Q87LL6_nD2 Q87LL6 ARGP_VIBPA VP2595 argP HTH-type transcriptional regulator ArgP 2594 91-165,266-298 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002417223 e5ydwA1 002995047 Q87L35_nD1 Q87L35 Q87L35_VIBPA VP2781 2780 6-313 f a.13 210 210.1 210.1.4 a+b four layers Ntn/PP2C Ntn (Glycosyl)asparaginase 000958258 e3c17B1 002995048 Q87MX8_nD1 Q87MX8 LUXU_VIBPA VP2098 luxU Phosphorelay protein LuxU 2098 6-110 f a.7 601 601.3 601.3.1 alpha bundles Four-helical up-and-down bundle Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 000003719 e2r25A1 002995049 Q87JB0_nD3 Q87JB0 Q87JB0_VIBPA VPA0343 3422 56-65,216-305 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001096987 e4kksA2 002995050 Q87JB0_nD4 Q87JB0 Q87JB0_VIBPA VPA0343 3422 41-55,306-375 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001139845 e4kkuB1 002995051 Q87JB0_nD1 Q87JB0 Q87JB0_VIBPA VPA0343 3422 66-105,181-215 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001313623 e4tkoB2 002995052 Q87JB0_nD2 Q87JB0 Q87JB0_VIBPA VPA0343 3422 106-180 f a.7 5086 5086.1 5086.1.1 alpha bundles helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins helical hairpin of HlyD-like secretion proteins 001632108 e4dk0A2 002995053 Q87MN8_nD3 Q87MN8 PDXB_VIBPA VP2193 pdxB Erythronate-4-phosphate dehydrogenase 2193 286-375 f a.11 6096 6096.1 6096.1.1 a+b two layers Dimerization domain of erythronate-4-phosphate dehydrogenase PdxB Dimerization domain of erythronate-4-phosphate dehydrogenase PdxB Dimerization domain of erythronate-4-phosphate dehydrogenase PdxB 001688956 e5dt9A3 002995054 Q87MN8_nD2 Q87MN8 PDXB_VIBPA VP2193 pdxB Erythronate-4-phosphate dehydrogenase 2193 91-265 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 001394317 e2o4cA3 002995055 Q87MN8_nD1 Q87MN8 PDXB_VIBPA VP2193 pdxB Erythronate-4-phosphate dehydrogenase 2193 1-90,266-285 f a.17 2003 2003.1 2003.1.11 a/b three-layered sandwiches Rossmann-like Rossmann-related Formate/glycerate dehydrogenase catalytic domain-like 001394316 e2o4cA2 002995056 Q87TQ7_nD4 Q87TQ7 DNAA_VIBPA VP0011 dnaA Chromosomal replication initiator protein DnaA 11 376-468 f a.6 101 101.1 101.1.6 alpha arrays HTH HTH TrpR 000143350 e3pvpA1 002995057 Q87TQ7_nD3 Q87TQ7 DNAA_VIBPA VP0011 dnaA Chromosomal replication initiator protein DnaA 11 301-370 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001231895 e2z4sA3 002995058 Q87TQ7_nD1 Q87TQ7 DNAA_VIBPA VP0011 dnaA Chromosomal replication initiator protein DnaA 11 6-80 f a.11 327 327.10 327.10.1 a+b two layers Alpha-lytic protease prodomain-like Ribosome-binding factor A (RbfA)-related Ribosome-binding factor A (RbfA)-related 001317906 e4tpsD1 002995059 Q87TQ7_nD2 Q87TQ7 DNAA_VIBPA VP0011 dnaA Chromosomal replication initiator protein DnaA 11 121-300 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001231890 e2z4rB2 002995060 Q87I51_nD1 Q87I51 Q87I51_VIBPA VPA0755 3834 31-125 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 000146271 e3nqyA1 002995061 Q87I51_nD2 Q87I51 Q87I51_VIBPA VPA0755 3834 126-205 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001170467 e4k90B5 002995062 Q87I51_nD5 Q87I51 Q87I51_VIBPA VPA0755 3834 636-700 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001162365 e3wcyA8 002995063 Q87I51_nD3 Q87I51 Q87I51_VIBPA VPA0755 3834 211-505 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001860569 e3nqxA1 002995064 Q87I51_nD4 Q87I51 Q87I51_VIBPA VPA0755 3834 521-625 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001872117 e5sv5A1 002995065 Q87JG7_nD1 Q87JG7 CH102_VIBPA VPA0286 groES2 Co-chaperonin GroES 2 3365 1-95 f a.1 236 236.1 236.1.2 beta barrels GroES-like GroES-related GroES 001429695 e4v4oo1 002995066 Q87MM3_nD4 Q87MM3 FADJ_VIBPA VP2208 fadJ Fatty acid oxidation complex subunit alpha 2208 611-703 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002754039 e6ysvA4 002995067 Q87MM3_nD3 Q87MM3 FADJ_VIBPA VP2208 fadJ Fatty acid oxidation complex subunit alpha 2208 491-605 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002599985 e6tnmA3 002995068 Q87MM3_nD2 Q87MM3 FADJ_VIBPA VP2208 fadJ Fatty acid oxidation complex subunit alpha 2208 301-490 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002754038 e6ysvA3 002995069 Q87MM3_nD1 Q87MM3 FADJ_VIBPA VP2208 fadJ Fatty acid oxidation complex subunit alpha 2208 1-300 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 002754036 e6ysvA1 002995070 Q9LB13_nD2 Q9LB13 CHEZ_VIBPA VP2230 cheZ Protein phosphatase CheZ 2230 56-190 f a.7 3755 3755.1 3755.1.1 alpha bundles YscO-like Putative type III secretion protein YscO-related Putative type III secretion protein YscO-related 001097271 e4mh6A1 002995071 Q9LB13_nD1 Q9LB13 CHEZ_VIBPA VP2230 cheZ Protein phosphatase CheZ 2230 1-30 f a.11 243 243.1 243.1.1 a+b two layers Cystatin-like NTF2-like NTF2-like 001389718 e4r1kB1 002995072 Q79YY3_nD1 Q79YY3 Q79YY3_VIBPA VP1393 1393 1-165 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 002097776 e5mxn61 002995073 Q87K06_nD3 Q87K06 Q87K06_VIBPA VPA0092 3171 351-390 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 001240751 e4mb3A8 002995074 Q87K06_nD2 Q87K06 Q87K06_VIBPA VPA0092 3171 236-340 f a.3 3019 3019.1 3019.1.1 beta sandwiches gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain gp11/flagellar cap protein FliD insertion domain 001142018 e4nx9A2 002995075 Q87K06_nD1 Q87K06 Q87K06_VIBPA VPA0092 3171 26-225 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001514559 e4ow5A1 002995076 Q87I99_nD2 Q87I99 Q87I99_VIBPA VPA0707 3786 306-370 f a.8 4207 4207.1 4207.1.2 alpha duplicates or obligate multimers Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region 002758216 e7emfG1 002995077 Q87I99_nD1 Q87I99 Q87I99_VIBPA VPA0707 3786 6-305 f a.10 3978 3978.1 3978.1.1 alpha complex topology Integral membrane Acyl-CoA desaturase Integral membrane Acyl-CoA desaturase Integral membrane Acyl-CoA desaturase 001563524 e4ymkA1 002995078 Q87QM7_nD1 Q87QM7 Q87QM7_VIBPA VP1122 DUF1365 domain-containing protein 1122 11-53,77-150,176-220 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000028066 e3emmA1 002995079 Q87HE1_nD1 Q87HE1 Q87HE1_VIBPA VPA1024 Transhydrogenase beta subunit 4103 6-150 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002120488 e4cw4A1 002995080 Q87HE1_nD2 Q87HE1 Q87HE1_VIBPA VPA1024 Transhydrogenase beta subunit 4103 151-275 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002595479 e6ql5C3 002995081 Q87MF4_nD3 Q87MF4 TILS_VIBPA VP2301 tilS tRNA(Ile)-lysidine synthase 2301 321-435 f a.5 865 865.1 865.1.1 beta complex topology PheT/TilS domain PheT/TilS domain PheT/TilS domain 000002313 e1ni5A1 002995082 Q87MF4_nD2 Q87MF4 TILS_VIBPA VP2301 tilS tRNA(Ile)-lysidine synthase 2301 231-320 f a.11 3018 3018.1 3018.1.1 a+b two layers MesJ substrate recognition domain-like MesJ substrate recognition domain-like MesJ substrate recognition domain-like 000005669 e1ni5A2 002995083 Q87MF4_nD1 Q87MF4 TILS_VIBPA VP2301 tilS tRNA(Ile)-lysidine synthase 2301 1-230 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000009845 e1ni5A3 002995084 Q87JD6_nD3 Q87JD6 Q87JD6_VIBPA VPA0317 3396 111-160,281-355,546-575 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001546305 e2wopA3 002995085 Q87JD6_nD4 Q87JD6 Q87JD6_VIBPA VPA0317 3396 356-545 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002599881 e6lu2A1 002995086 Q87JD6_nD2 Q87JD6 Q87JD6_VIBPA VPA0317 3396 161-280 f a.11 304 304.136 304.136.1 a+b two layers Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain 002820817 e7og0B2 002995087 Q87JD6_nD1 Q87JD6 Q87JD6_VIBPA VPA0317 3396 1-130 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000143150 e3q5fA1 002995088 Q87G52_nD2 Q87G52 Q87G52_VIBPA VPA1465 P/Homo B domain-containing protein 4544 101-485 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 001120761 e4k90A1 002995089 Q87G52_nD1 Q87G52 Q87G52_VIBPA VPA1465 P/Homo B domain-containing protein 4544 21-100 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 001170468 e4k90B6 002995090 Q87G52_nD4 Q87G52 Q87G52_VIBPA VPA1465 P/Homo B domain-containing protein 4544 586-720 f a.3 10 10.1 10.1.2 beta sandwiches jelly-roll Concanavalin A-like Galactose-binding domain-like 001514578 e3wqbA2 002995091 Q87G52_nD3 Q87G52 Q87G52_VIBPA VPA1465 P/Homo B domain-containing protein 4544 486-585 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 001919941 e2pn5A9 002995092 Q87IW9_nD1 Q87IW9 Q87IW9_VIBPA VPA0487 DUF3139 domain-containing protein 3566 11-120 f a.11 243 243.3 243.3.1 a+b two layers Cystatin-like Cystatin/monellin Cystatin/monellin 000006417 e1roaA1 002995093 Q87H61_nD4 Q87H61 Q87H61_VIBPA VPA1104 EAL domain-containing protein 4183 321-465 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000006856 e1ew0A1 002995094 Q87H61_nD3 Q87H61 Q87H61_VIBPA VPA1104 EAL domain-containing protein 4183 296-320 f a.8 4168 4168.1 4168.1.1 alpha duplicates or obligate multimers HAMP domain HAMP domain HAMP domain 002082576 e5jeqA3 002995095 Q87H61_nD5 Q87H61 Q87H61_VIBPA VPA1104 EAL domain-containing protein 4183 466-645 f a.11 304 304.48 304.48.1 a+b two layers Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like 002141256 e5xgbA2 002995096 Q87H61_nD2 Q87H61 Q87H61_VIBPA VPA1104 EAL domain-containing protein 4183 16-40,266-295 f a.21 3757 3757.1 3757.1.1 extended segments AF1503 pre-HAMP domain AF1503 pre-HAMP domain AF1503 pre-HAMP domain 001283644 e4cq4A1 002995097 Q87H61_nD1 Q87H61 Q87H61_VIBPA VPA1104 EAL domain-containing protein 4183 41-265 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000006843 e2hjeA1 002995098 Q87H61_nD6 Q87H61 Q87H61_VIBPA VPA1104 EAL domain-containing protein 4183 646-900 f a.16 2002 2002.5 2002.5.1 a/b barrels TIM beta/alpha-barrel EAL domain EAL domain 002034028 e5m1tA1 002995099 Q87S79_nD1 Q87S79 Q87S79_VIBPA VP0545 nagZ Beta-hexosaminidase 545 1-325 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000321838 e2oxnA1 002995100 Q87K52_nD1 Q87K52 Q87K52_VIBPA VPA0046 Methylated-DNA--protein-cysteine methyltransferase 3125 1-70 f a.18 2484 2484.2 2484.2.1 mixed a+b and a/b Ribonuclease H-like Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase domain 001157767 e4bhbA4 002995101 Q87K52_nD2 Q87K52 Q87K52_VIBPA VPA0046 Methylated-DNA--protein-cysteine methyltransferase 3125 71-155 f a.6 101 101.1 101.1.7 alpha arrays HTH HTH Methylated DNA-protein cysteine methyltransferase-C 000990691 e4bhcA1 002995102 Q87LB6_nD1 Q87LB6 Q87LB6_VIBPA VP2696 2695 41-160 f a.11 274 274.1 274.1.1 a+b two layers Pili subunits Pili subunits Pili subunits 000868467 e4dq9B1 002995103 Q87L47_nD1 Q87L47 Q87L47_VIBPA VP2768 Bacterioferritin 2767 6-158 f a.7 150 150.1 150.1.1 alpha bundles Ferritin/Heme oxygenase/4-helical cytokines Ferritin/Heme oxygenase Ferritin 000362387 e3e1lA1 002995104 Q87R48_nD1 Q87R48 Q87R48_VIBPA VP0950 950 36-144 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002389367 e5wecB1 002995105 Q87J83_nD1 Q87J83 Q87J83_VIBPA VPA0371 Lipoprotein 3449 71-255 f a.1 3863 3863.1 3863.1.1 beta barrels Virulence associated protein B (Vapb) Virulence associated protein B (Vapb) Virulence associated protein B (Vapb) 002800455 e7ofnA1 002995106 Q87MQ3_nD1 Q87MQ3 Y2178_VIBPA VP2178 Nucleoid-associated protein VP2178 2178 11-95 f a.11 245 245.2 245.2.1 a+b two layers Ribonuclease PH domain 2-like YbaB YbaB 000005784 e1j8bA1 002995107 Q87TA8_nD1 Q87TA8 Q87TA8_VIBPA VP0162 TPR_REGION domain-containing protein 162 1-245 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001956215 e5wsgd1 002995108 Q87TA8_nD2 Q87TA8 Q87TA8_VIBPA VP0162 TPR_REGION domain-containing protein 162 246-400 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001281537 e4leuA1 002995109 Q87S67_nD2 Q87S67 Q87S67_VIBPA VP0557 557 131-240 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002995110 Q87S67_nD1 Q87S67 Q87S67_VIBPA VP0557 557 36-130,241-280 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 002062177 e4q0cC4 002995111 Q87S67_nD3 Q87S67 Q87S67_VIBPA VP0557 557 286-465 f a.14 235 235.1 235.1.1 a+b complex topology Lysozyme-like Lysozyme-like Lysozyme-like 001526271 e4p11A1 002995112 Q87L95_nD5 Q87L95 METH_VIBPA VP2717 metH Methionine synthase 2716 906-1225 f a.14 258 258.1 258.1.1 a+b complex topology Methionine synthase activation domain-like Methionine synthase activation domain-like Methionine synthase activation domain-like 000007459 e1mskA1 002995113 Q87L95_nD2 Q87L95 METH_VIBPA VP2717 metH Methionine synthase 2716 341-640 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001240122 e4cczA3 002995114 Q87L95_nD1 Q87L95 METH_VIBPA VP2717 metH Methionine synthase 2716 6-335 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001240123 e4cczA4 002995115 Q87L95_nD4 Q87L95 METH_VIBPA VP2717 metH Methionine synthase 2716 746-905 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010074 e3bulA3 002995116 Q87L95_nD3 Q87L95 METH_VIBPA VP2717 metH Methionine synthase 2716 646-740 f a.6 4995 4995.1 4995.1.1 alpha arrays Methionine synthase domain-like Methionine synthase domain-like Methionine synthase domain-like 000003239 e3bulA1 002995117 Q87P17_nD1 Q87P17 Q87P17_VIBPA VP1701 1701 1-140 f a.11 241 241.1 241.1.1 a+b two layers Type III secretory system chaperone-like Type III secretory system chaperone Type III secretory system chaperone 000394440 e3kxyG1 002995118 Q87SP0_nD1 Q87SP0 Q87SP0_VIBPA VP0382 Metallophos domain-containing protein 382 1-70,96-263 f a.13 246 246.2 246.2.1 a+b four layers Carbon-nitrogen hydrolase-like Metallo-dependent phosphatases Metallo-dependent phosphatases 002625415 e6uncB1 002995119 Q87LE4_nD1 Q87LE4 Q87LE4_VIBPA VP2668 lptA Lipopolysaccharide export system protein LptA 2667 26-160 f a.2 3523 3523.1 3523.1.1 beta meanders Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) 000340941 e2r19B1 002995120 Q87MH0_nD2 Q87MH0 PUR5_VIBPA VP2285 purM Phosphoribosylformylglycinamidine cyclo-ligase 2285 171-345 f a.11 304 304.111 304.111.1 a+b two layers Alpha-beta plaits PurM C-terminal domain-like PurM C-terminal domain-like 000066718 e1cliC1 002995121 Q87MH0_nD1 Q87MH0 PUR5_VIBPA VP2285 purM Phosphoribosylformylglycinamidine cyclo-ligase 2285 6-170 f a.12 301 301.2 301.2.1 a+b three layers Bacillus chorismate mutase-like PurM N-terminal domain-like PurM N-terminal domain-like 000079139 e1cliC2 002995122 Q87M07_nD1 Q87M07 Q87M07_VIBPA VP2451 Lipoprotein NlpI 2451 21-300 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002137743 e5wqlA1 002995123 Q87PN8_nD1 Q87PN8 Q87PN8_VIBPA VP1463 1463 1-190 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001262725 e2r60A2 002995124 Q87PN8_nD2 Q87PN8 Q87PN8_VIBPA VP1463 1463 191-370 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717304 e2c4mC2 002995125 Q87H57_nD1 Q87H57 Q87H57_VIBPA VPA1108 4187 21-244 f a.11 304 304.103 304.103.1 a+b two layers Alpha-beta plaits FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 000066618 e1v5zA1 002995126 Q87RS6_nD1 Q87RS6 QUEF_VIBPA VP0701 queF NADPH-dependent 7-cyano-7-deazaguanine reductase 701 21-140 f a.11 230 230.1 230.1.1 a+b two layers T-fold Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 001282307 e3s19D2 002995127 Q87RS6_nD2 Q87RS6 QUEF_VIBPA VP0701 queF NADPH-dependent 7-cyano-7-deazaguanine reductase 701 141-280 f a.11 230 230.1 230.1.1 a+b two layers T-fold Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 001282306 e3s19D1 002995128 Q87SQ2_nD3 Q87SQ2 Q87SQ2_VIBPA VP0370 PTS system mannitol-specific EIICBA component 370 506-645 f a.12 311 311.1 311.1.1 a+b three layers Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 000079435 e1a3aC1 002995129 Q87SQ2_nD1 Q87SQ2 Q87SQ2_VIBPA VP0370 PTS system mannitol-specific EIICBA component 370 1-345 f a.10 3227 3227.1 3227.1.1 alpha complex topology phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC phosphorylation-coupled saccharide transporter ChbC 000416667 e3qnqC1 002995130 Q87SQ2_nD2 Q87SQ2 Q87SQ2_VIBPA VP0370 PTS system mannitol-specific EIICBA component 370 381-495 f a.17 2007 2007.2 2007.2.2 a/b three-layered sandwiches Flavodoxin-like Flavoproteins/Phosphotyrosine protein phosphatases-like Phosphotyrosine protein phosphatases I-like 000010098 e1vkrA1 002995131 Q87L23_nD1 Q87L23 Q87L23_VIBPA VP2794 DUF1338 domain-containing protein 2793 1-135 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 000119464 e3lhoA1 002995132 Q87L23_nD2 Q87L23 Q87L23_VIBPA VP2794 DUF1338 domain-containing protein 2793 136-260 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 002774327 e6w1kB1 002995133 Q87JW4_nD1 Q87JW4 Q87JW4_VIBPA VPA0134 3213 26-265 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002701878 e7cagA1 002995134 Q87JP8_nD3 Q87JP8 Q87JP8_VIBPA VPA0200 HTH cro/C1-type domain-containing protein 3279 386-495 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002552681 e6kjuB1 002995135 Q87JP8_nD2 Q87JP8 Q87JP8_VIBPA VPA0200 HTH cro/C1-type domain-containing protein 3279 131-385 f a.18 2498 2498.1 2498.1.1 mixed a+b and a/b Zincin-like Metalloproteases ("zincins") catalytic domain Metalloproteases ("zincins") catalytic domain 002472901 e6cyyA1 002995136 Q87JP8_nD1 Q87JP8 Q87JP8_VIBPA VPA0200 HTH cro/C1-type domain-containing protein 3279 11-80,106-130 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 001510513 e3op9A1 002995137 Q87SC8_nD1 Q87SC8 Q87SC8_VIBPA VP0496 Threonine synthase 496 6-215 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002486236 e3ss7X2 002995138 Q87SC8_nD2 Q87SC8 Q87SC8_VIBPA VP0496 Threonine synthase 496 216-390 f a.17 2003 2003.4 2003.4.1 a/b three-layered sandwiches Rossmann-like Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes 002482210 e1vb3A3 002995139 Q87RL1_nD3 Q87RL1 Q87RL1_VIBPA VP0767 Flagellar basal-body protein 767 291-375 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 001005534 e3w1eA3 002995140 Q87RL1_nD1 Q87RL1 Q87RL1_VIBPA VP0767 Flagellar basal-body protein 767 21-120 f a.11 872 872.9 872.9.1 a+b two layers Dodecin subunit-like Flagella basal-body protein flgT N-terminal domain Flagella basal-body protein flgT N-terminal domain 001005532 e3w1eA1 002995141 Q87RL1_nD2 Q87RL1 Q87RL1_VIBPA VP0767 Flagellar basal-body protein 767 121-290 f a.17 7503 7503.1 7503.1.1 a/b three-layered sandwiches TolB, N-terminal domain TolB, N-terminal domain TolB, N-terminal domain 001005533 e3w1eA2 002995142 Q87SG4_nD2 Q87SG4 MURG_VIBPA VP0460 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 460 161-350 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717475 e1f0kB1 002995143 Q87SG4_nD1 Q87SG4 MURG_VIBPA VP0460 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 460 1-160 f a.17 7512 7512.1 7512.1.1 a/b three-layered sandwiches UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 001717476 e1f0kB2 002995144 Q87NE1_nD1 Q87NE1 Q87NE1_VIBPA VP1927 1927 41-220 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 002769939 e7b04A1 002995145 Q87TR3_nD1 Q87TR3 RL34_VIBPA VP0005 rpmH 50S ribosomal protein L34 5 6-44 f a.21 3074 3074.1 3074.1.1 extended segments 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34 001560298 e4wzdL51 002995146 Q87P06_nD1 Q87P06 Q87P06_VIBPA VP1712 histidine kinase 1712 6-200 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 000078207 e1p0zE1 002995147 Q87P06_nD2 Q87P06 Q87P06_VIBPA VP1712 histidine kinase 1712 206-315 f a.12 223 223.1 223.1.1 a+b three layers Profilin-like sensor domains sensor domains 002141257 e5xgbA3 002995148 Q87P06_nD3 Q87P06 Q87P06_VIBPA VP1712 histidine kinase 1712 321-365 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002710374 e6ph4B1 002995149 Q87P06_nD4 Q87P06 Q87P06_VIBPA VP1712 histidine kinase 1712 366-535 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223391 e3d2rB3 002995150 Q87N15_nD1 Q87N15 RLUC_VIBPA VP2061 rluC Ribosomal large subunit pseudouridine synthase C 2061 6-80 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 002774630 e6yxyEC2 002995151 Q87N15_nD2 Q87N15 RLUC_VIBPA VP2061 rluC Ribosomal large subunit pseudouridine synthase C 2061 81-310 f a.11 304 304.102 304.102.1 a+b two layers Alpha-beta plaits Pseudouridine synthase Pseudouridine synthase 000288626 e1xpiB1 002995152 Q87FU3_nD1 Q87FU3 Q87FU3_VIBPA VPA1585 RDD domain-containing protein 4664 6-145 f a.6 4085 4085.1 4085.1.1 alpha arrays RbcX-like RbcX-like RbcX-like 000044747 e2peqB1 002995153 Q87KG2_nD1 Q87KG2 Y3015_VIBPA VP3015 UPF0276 protein VP3015 3014 1-288 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000197695 e3bwwA1 002995154 Q87IY3_nD1 Q87IY3 Q87IY3_VIBPA VPA0473 OMP_b-brl domain-containing protein 3552 31-265 f a.1 5084 5084.3 5084.3.1 beta barrels Outer membrane meander beta-barrels Autotransporter Autotransporter 001503710 e3kvnX1 002995155 Q87QK5_nD1 Q87QK5 HIS2_VIBPA VP1144 hisI Histidine biosynthesis bifunctional protein HisIE 1144 6-120 f a.1 239 239.2 239.2.1 beta barrels Ribosomal protein L25-like HisI-like HisI-like 002565965 e6j2lA1 002995156 Q87QK5_nD2 Q87QK5 HIS2_VIBPA VP1144 hisI Histidine biosynthesis bifunctional protein HisIE 1144 121-210 f a.7 159 159.1 159.1.2 alpha bundles all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases MazG-related 002565966 e6j2lA2 002995157 Q87LW5_nD1 Q87LW5 Q87LW5_VIBPA VP2493 2493 1-110 f a.11 304 304.5 304.5.1 a+b two layers Alpha-beta plaits GlnB-like GlnB-like 002802079 e7p50A1 002995158 Q87H36_nD1 Q87H36 Q87H36_VIBPA VPA1129 4208 1-305 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000160017 e2ftpA1 002995159 Q87PL5_nD1 Q87PL5 Q87PL5_VIBPA VP1487 1487 6-135 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 002392999 e6hixAj1 002995160 Q87FX8_nD1 Q87FX8 Q87FX8_VIBPA VPA1542 fliP Flagellar biosynthetic protein FliP 4621 51-195 f a.7 1180 1180.1 1180.1.1 alpha bundles Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain Flagellar biosynthetic protein FliP periplasmic domain 002102658 e5h72B1 002995161 Q87FX8_nD2 Q87FX8 Q87FX8_VIBPA VPA1542 fliP Flagellar biosynthetic protein FliP 4621 196-245 f a.8 6026 6026.1 6026.1.1 alpha duplicates or obligate multimers cwf21 domain cwf21 domain cwf21 domain 001945939 e5mpsR1 002995162 Q87R93_nD1 Q87R93 Q87R93_VIBPA VP0904 904 6-140 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002568350 e6s2jA1 002995163 Q87R93_nD2 Q87R93 Q87R93_VIBPA VP0904 904 141-220 f a.11 4261 4261.1 4261.1.1 a+b two layers TrkA C-terminal domain-like TrkA C-terminal domain-like TrkA C-terminal domain-like 002547913 e6i8vA2 002995164 Q87PP4_nD1 Q87PP4 Q87PP4_VIBPA VP1457 ATP-binding protein 1457 1-129 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000009559 e1ly1A1 002995165 Q99289_nD2 Q99289 HLT_VIBPA VPA0226 Thermolabile hemolysin 3305 136-418 f a.17 2007 2007.5 2007.5.1 a/b three-layered sandwiches Flavodoxin-like SGNH hydrolase SGNH hydrolase 002532687 e6jl2A3 002995166 Q99289_nD1 Q99289 HLT_VIBPA VPA0226 Thermolabile hemolysin 3305 31-135 f a.11 7092 7092.1 7092.1.1 a+b two layers N-terminal domain of vibrio phospholipase N-terminal domain of vibrio phospholipase N-terminal domain of vibrio phospholipase 002526332 e6jl2A2 002995167 Q87LY8_nD1 Q87LY8 SYY2_VIBPA VP2470 tyrS2 Tyrosine--tRNA ligase 2 2470 6-325 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 002167746 e6byqA1 002995168 Q87LY8_nD2 Q87LY8 SYY2_VIBPA VP2470 tyrS2 Tyrosine--tRNA ligase 2 2470 326-395 f a.11 221 221.1 221.1.2 a+b two layers beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif 000006218 e1h3fA1 002995169 Q87TB4_nD1 Q87TB4 Q87TB4_VIBPA VP0156 156 21-450 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 001878861 e5i6cA1 002995170 Q87SS2_nD2 Q87SS2 Q87SS2_VIBPA VP0350 350 106-185,286-315 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002995171 Q87SS2_nD1 Q87SS2 Q87SS2_VIBPA VP0350 350 21-100 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002995172 Q87SS2_nD3 Q87SS2 Q87SS2_VIBPA VP0350 350 186-285 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002995173 Q87LY7_nD3 Q87LY7 Q87LY7_VIBPA VP2471 Peptidase M23 2471 266-425 f a.14 325 325.1 325.1.6 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Duplicated hybrid motif 002774289 e6ue4B1 002995174 Q87LY7_nD2 Q87LY7 Q87LY7_VIBPA VP2471 Peptidase M23 2471 161-260 f a.11 3953 3953.1 3953.1.1 a+b two layers Csd3 N-terminal domain Csd3 N-terminal domain Csd3 N-terminal domain 002774290 e6ue4B2 002995175 Q87LY7_nD1 Q87LY7 Q87LY7_VIBPA VP2471 Peptidase M23 2471 71-160 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 002740077 e6u2aA2 002995176 Q87PE9_nD1 Q87PE9 Q87PE9_VIBPA VP1559 1559 11-45 f a.21 6159 6159.1 6159.1.1 extended segments Nup54 C-terminal interacting domain Nup54 C-terminal interacting domain Nup54 C-terminal interacting domain 001397327 e4jnuB1 002995177 Q87RC4_nD1 Q87RC4 Q87RC4_VIBPA VP0873 Septum site-determining protein MinD 873 1-265 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000179683 e3q9lA1 002995178 Q87Q67_nD1 Q87Q67 Y1283_VIBPA VP1283 UPF0145 protein VP1283 1283 1-105 f a.11 872 872.3 872.3.1 a+b two layers Dodecin subunit-like YbjQ-like YbjQ-like 000068195 e1y2iC1 002995179 Q87JV1_nD1 Q87JV1 Q87JV1_VIBPA VPA0147 3226 1-140 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002544917 e6k13A1 002995180 Q87JV1_nD2 Q87JV1 Q87JV1_VIBPA VPA0147 3226 141-315 f a.14 279 279.1 279.1.1 a+b complex topology LDH C-terminal domain-like LDH C-terminal domain-like LDH C-terminal domain-like 002710035 e7nayA1 002995181 Q87IS9_nD1 Q87IS9 Q87IS9_VIBPA VPA0527 3606 6-349 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 002608455 e6v78B1 002995182 Q87FS4_nD4 Q87FS4 Q87FS4_VIBPA VPA1604 4683 271-395 f a.7 3755 3755.3 3755.3.1 alpha bundles YscO-like CT398 helical hairpin CT398 helical hairpin 002321117 e6gapA2 002995183 Q87FS4_nD3 Q87FS4 Q87FS4_VIBPA VPA1604 4683 21-50,421-450 f a.21 3470 3470.1 3470.1.1 extended segments Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain Glycophorin-A transmembrane domain 002735579 e6w9yB1 002995184 Q87FS4_nD5 Q87FS4 Q87FS4_VIBPA VPA1604 4683 451-719 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000398501 e3la6N1 002995185 Q87FS4_nD2 Q87FS4 Q87FS4_VIBPA VPA1604 4683 51-110,206-265,406-420 f a.11 304 304.58 304.58.1 a+b two layers Alpha-beta plaits FepE-like FepE-like 000005387 e3b8mA1 002995186 Q87FS4_nD1 Q87FS4 Q87FS4_VIBPA VPA1604 4683 111-205 f a.3 3943 3943.1 3943.1.1 beta sandwiches Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains Flagellar hook-associated protein 1 beta-sandwich domains 002409295 e5zj0A2 002995187 Q87Q97_nD1 Q87Q97 Q87Q97_VIBPA VP1253 1253 6-405 f a.11 3016 3016.1 3016.1.1 a+b two layers C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases C-terminal domain in some PLP-dependent transferases 002561579 e6ndnA2 002995188 Q87TN8_nD2 Q87TN8 Q87TN8_VIBPA VP0031 YigZ family protein 31 136-205 f a.11 304 304.24 304.24.1 a+b two layers Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like 000005300 e1vi7A1 002995189 Q87TN8_nD1 Q87TN8 Q87TN8_VIBPA VP0031 YigZ family protein 31 6-135 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000071560 e1vi7A2 002995190 Q87K09_nD2 Q87K09 Q87K09_VIBPA VPA0089 3168 121-250 f a.17 7514 7514.1 7514.1.1 a/b three-layered sandwiches Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain 002600703 e2gpjA3 002995191 Q87K09_nD1 Q87K09 Q87K09_VIBPA VPA0089 3168 6-120 f a.1 1 1.1 1.1.7 beta barrels cradle loop barrel RIFT-related Alanine racemase-C 002418866 e6gehA2 002995192 Q87T47_nD1 Q87T47 Q87T47_VIBPA VP0223 Glucose-1-phosphate thymidylyltransferase 223 1-285 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 001109214 e4ho4B1 002995193 Q87LS2_nD1 Q87LS2 GSH1_VIBPA VP2539 gshA Glutamate--cysteine ligase 2539 1-515 f a.11 321 321.1 321.1.1 a+b two layers Glutamine synthetase-like Glutamine synthetase/guanido kinase Glutamine synthetase/guanido kinase 000005520 e2d32A1 002995194 Q87J46_nD1 Q87J46 PYRC_VIBPA VPA0408 pyrC Dihydroorotase 3486 6-340 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002068267 e5vgmB1 002995195 Q87S09_nD3 Q87S09 EX7L_VIBPA VP0615 xseA Exodeoxyribonuclease 7 large subunit 615 406-443 f a.14 325 325.1 325.1.7 a+b complex topology alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif 001763676 e5c22B1 002995196 Q87S09_nD2 Q87S09 EX7L_VIBPA VP0615 xseA Exodeoxyribonuclease 7 large subunit 615 131-390 f a.17 2007 2007.1 2007.1.12 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Type II 3-dehydroquinate dehydratase 002634677 e6smfA1 002995197 Q87S09_nD1 Q87S09 EX7L_VIBPA VP0615 xseA Exodeoxyribonuclease 7 large subunit 615 6-105 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 001714442 e1se8A3 002995198 Q87PM6_nD2 Q87PM6 Q87PM6_VIBPA VP1475 OmpA-like domain-containing protein 1475 141-270 f a.12 301 301.3 301.3.1 a+b three layers Bacillus chorismate mutase-like OmpA-like OmpA-like 001285291 e4pwtC1 002995199 Q87PM6_nD1 Q87PM6 Q87PM6_VIBPA VP1475 OmpA-like domain-containing protein 1475 61-135 f a.7 632 632.11 632.11.1 alpha bundles immunoglobulin/albumin-binding domain-like AF1782-like AF1782-like 001124569 e4fzoA1 002995200 Q87SJ3_nD1 Q87SJ3 Q87SJ3_VIBPA VP0430 parE DNA topoisomerase 4 subunit B 430 6-215 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 002776927 e7cmpB2 002995201 Q87SJ3_nD2 Q87SJ3 Q87SJ3_VIBPA VP0430 parE DNA topoisomerase 4 subunit B 430 216-390 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000071290 e1s16B1 002995202 Q87SJ3_nD3 Q87SJ3 Q87SJ3_VIBPA VP0430 parE DNA topoisomerase 4 subunit B 430 396-605 f a.17 2006 2006.1 2006.1.3 a/b three-layered sandwiches HAD domain-like HAD domain-related Toprim domain 002126504 e4gfhA6 002995203 P59410_nD2 P59410 TDH_VIBPA VPA1509 tdh L-threonine 3-dehydrogenase 4588 151-310 f a.17 2003 2003.1 2003.1.1 a/b three-layered sandwiches Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains 002028297 e5kiaA1 002995204 P59410_nD1 P59410 TDH_VIBPA VPA1509 tdh L-threonine 3-dehydrogenase 4588 1-150,311-343 f a.1 236 236.1 236.1.1 beta barrels GroES-like GroES-related Alcohol dehydrogenase-like, N-terminal domain 000321633 e2dq4B1 002995205 Q87JK4_nD1 Q87JK4 Q87JK4_VIBPA VPA0244 DAO domain-containing protein 3324 1-465 f a.17 2003 2003.1 2003.1.3 a/b three-layered sandwiches Rossmann-like Rossmann-related Nucleotide-binding domain 002062168 e3ps9A2 002995206 Q87M65_nD2 Q87M65 Q87M65_VIBPA VP2393 2393 61-160,291-320 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001252984 e3oqoC4 002995207 Q87M65_nD1 Q87M65 Q87M65_VIBPA VP2393 2393 1-60 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002647093 e7ce1K1 002995208 Q87M65_nD3 Q87M65 Q87M65_VIBPA VP2393 2393 161-290,321-330 f a.17 2007 2007.1 2007.1.2 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Periplasmic binding protein-like I 001172998 e1jftA3 002995209 Q87R22_nD1 Q87R22 Q87R22_VIBPA VP0976 PilZ domain-containing protein 976 6-180 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 002407461 e5y6gA1 002995210 Q87NB4_nD1 Q87NB4 Q87NB4_VIBPA VP1954 1954 1-285 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001834356 e2yb1A1 002995211 Q87S34_nD3 Q87S34 Q87S34_VIBPA VP0590 secD Protein translocase subunit SecD 590 131-145,216-280,431-445 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 002075785 e5xanB2 002995212 Q87S34_nD4 Q87S34 Q87S34_VIBPA VP0590 secD Protein translocase subunit SecD 590 281-430 f a.1 1 1.1 1.1.5 beta barrels cradle loop barrel RIFT-related FMN-binding split barrel 001760082 e3aqoD1 002995213 Q87S34_nD1 Q87S34 Q87S34_VIBPA VP0590 secD Protein translocase subunit SecD 590 31-115 f a.11 304 304.28 304.28.1 a+b two layers Alpha-beta plaits Ferredoxin domains in multidrug efflux transporter Multidrug efflux transporter AcrB pore domain 001298173 e4pwuC1 002995214 Q87S34_nD2 Q87S34 Q87S34_VIBPA VP0590 secD Protein translocase subunit SecD 590 146-215 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 000387760 e2w7vB1 002995215 Q87S34_nD5 Q87S34 Q87S34_VIBPA VP0590 secD Protein translocase subunit SecD 590 1-30,116-130,446-615 f a.7 5067 5067.1 5067.1.1 alpha bundles Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 002075788 e5xanB5 002995216 Q87P25_nD1 Q87P25 Q87P25_VIBPA VP1693 1693 6-115 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002464284 e6hftA1 002995217 Q877K3_nD1 Q877K3 Q877K3_VIBPA VP1584VPA0909 1584 1-80 f a.1 220 220.1 220.1.1 beta barrels PH domain-like PH domain-like PH domain-like 001139664 e4iapB2 002995218 Q87JX6_nD1 Q87JX6 Q87JX6_VIBPA VPA0122 N-acetyltransferase domain-containing protein 3201 1-170 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001291869 e4hnyD1 002995219 Q87SU8_nD1 Q87SU8 ARGR_VIBPA VP0324 argR Arginine repressor 324 6-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002561 e1aoyA1 002995220 Q87SU8_nD2 Q87SU8 ARGR_VIBPA VP0324 argR Arginine repressor 324 81-155 f a.11 306 306.2 306.2.1 a+b two layers Glucose permease domain IIB-like arginine repressor C terminal domain-related C-terminal domain of arginine repressor 001016844 e3v4gA2 002995221 Q87J63_nD1 Q87J63 Q87J63_VIBPA VPA0390 rhlE ATP-dependent RNA helicase RhlE 3469 6-210 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001507990 e4px9C1 002995222 Q87J63_nD2 Q87J63 Q87J63_VIBPA VPA0390 rhlE ATP-dependent RNA helicase RhlE 3469 211-405 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001386767 e3i5xA1 002995223 Q87MG6_nD5 Q87MG6 Q87MG6_VIBPA VP2289 Acyl-coenzyme A dehydrogenase 2289 101-115,551-715 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 002321875 e2z1qB4 002995224 Q87MG6_nD2 Q87MG6 Q87MG6_VIBPA VP2289 Acyl-coenzyme A dehydrogenase 2289 116-230 f a.6 4033 4033.1 4033.1.1 alpha arrays Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like 001171952 e3b96A6 002995225 Q87MG6_nD6 Q87MG6 Q87MG6_VIBPA VP2289 Acyl-coenzyme A dehydrogenase 2289 716-795 f a.6 3151 3151.1 3151.1.1 alpha arrays SPP1 phage GP23.1 SPP1 phage GP23.1 SPP1 phage GP23.1 000397561 e2xf5B1 002995226 Q87MG6_nD1 Q87MG6 Q87MG6_VIBPA VP2289 Acyl-coenzyme A dehydrogenase 2289 1-85 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 002784228 e7oqeE1 002995227 Q87MG6_nD4 Q87MG6 Q87MG6_VIBPA VP2289 Acyl-coenzyme A dehydrogenase 2289 86-95,366-550,796-805 f a.7 633 633.6 633.6.1 alpha bundles Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 000054170 e1u8vC3 002995228 Q87MG6_nD3 Q87MG6 Q87MG6_VIBPA VP2289 Acyl-coenzyme A dehydrogenase 2289 231-365 f a.5 4052 4052.1 4052.1.1 beta complex topology Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like 000044273 e1w07B1 002995229 Q87LN3_nD2 Q87LN3 Q87LN3_VIBPA VP2578 RNA polymerase sigma factor 2577 106-190 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002505916 e6p18Q1 002995230 Q87LN3_nD1 Q87LN3 Q87LN3_VIBPA VP2578 RNA polymerase sigma factor 2577 6-100 f a.10 142 142.1 142.1.1 alpha complex topology Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors 002168198 e6bzoF2 002995231 Q87QG5_nD1 Q87QG5 Q87QG5_VIBPA VP1184 Transporter 1184 6-475 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 002647913 e6yu6B1 002995232 Q87SG7_nD1 Q87SG7 MRAY_VIBPA VP0457 mraY Phospho-N-acetylmuramoyl-pentapeptide-transferase 457 11-360 f a.7 3754 3754.1 3754.1.1 alpha bundles Bacterial cell wall synthesis membrane enzyme MraY-related Bacterial cell wall synthesis membrane enzyme MraY-related Bacterial cell wall synthesis membrane enzyme MraY-related 002515146 e6oyhA1 002995233 Q87PX9_nD1 Q87PX9 Q87PX9_VIBPA VP1371 1371 1-195 f a.17 7525 7525.1 7525.1.1 a/b three-layered sandwiches Phosphoglycerate mutase-like Phosphoglycerate mutase-like Phosphoglycerate mutase-like 000383568 e3lntA1 002995234 Q87PZ5_nD1 Q87PZ5 Q87PZ5_VIBPA VP1355 DUF4056 domain-containing protein 1355 131-295,366-410 f a.7 1075 1075.1 1075.1.1 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related ABCG5/ABCG8 transmembrane domain 002673983 e6xjhA1 002995235 Q87QY2_nD1 Q87QY2 BPT_VIBPA VP1017 bpt Aspartate/glutamate leucyltransferase 1017 6-230 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 001176053 e3tt2A6 002995236 Q87RX9_nD1 Q87RX9 Q87RX9_VIBPA VP0647 bamE Outer membrane protein assembly factor BamE 647 21-110 f a.11 809 809.1 809.1.1 a+b two layers BLIP-like beta-lactamase-inhibitor protein, BLIP beta-lactamase-inhibitor protein, BLIP 002804778 e7rj5E1 002995237 Q87KR4_nD2 Q87KR4 Q87KR4_VIBPA VP2912 Hemolysin 2911 161-325 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000314531 e2ooyE2 002995238 Q87KR4_nD1 Q87KR4 Q87KR4_VIBPA VP2912 Hemolysin 2911 1-145 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002995239 Q87KL1_nD1 Q87KL1 Q87KL1_VIBPA VP2966 2965 6-335 f a.6 3542 3542.1 3542.1.1 alpha arrays Presenilin family intramembrane aspartate proteases Presenilin family intramembrane aspartate proteases Presenilin family intramembrane aspartate proteases 002429565 e6idfB1 002995240 Q87J12_nD2 Q87J12 Q87J12_VIBPA VPA0443 Radical SAM core domain-containing protein 3522 86-375 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002322646 e5v1tA1 002995241 Q87J12_nD1 Q87J12 Q87J12_VIBPA VPA0443 Radical SAM core domain-containing protein 3522 16-85 f a.17 2487 2487.1 2487.1.1 a/b three-layered sandwiches The "swivelling" beta/beta/alpha domains The "swivelling" beta/beta/alpha domain The "swivelling" beta/beta/alpha domain 001517515 e3t07D4 002995242 Q87HD9_nD2 Q87HD9 Q87HD9_VIBPA VPA1026 Phage_base_V domain-containing protein 4105 111-195 f a.14 3070 3070.1 3070.1.1 a+b complex topology N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins 001117584 e2p5zX4 002995243 Q87HD9_nD5 Q87HD9 Q87HD9_VIBPA VPA1026 Phage_base_V domain-containing protein 4105 371-610 f a.1 2 2.7 2.7.1 beta barrels OB-fold Tail-associated lysozyme gp5-N Tail-associated lysozyme gp5-N 002468517 e6j0mA1 002995244 Q87HD9_nD1 Q87HD9 Q87HD9_VIBPA VPA1026 Phage_base_V domain-containing protein 4105 6-110 f a.1 1 1.1 1.1.13 beta barrels cradle loop barrel RIFT-related Phage tail proteins 001117585 e2p5zX1 002995245 Q87HD9_nD3 Q87HD9 Q87HD9_VIBPA VPA1026 Phage_base_V domain-containing protein 4105 226-290 f a.14 3071 3071.1 3071.1.1 a+b complex topology C-terminal insertion domain in phage tail proteins C-terminal insertion domain in phage tail proteins C-terminal insertion domain in phage tail proteins 002475125 e6rbkC4 002995246 Q87HD9_nD4 Q87HD9 Q87HD9_VIBPA VPA1026 Phage_base_V domain-containing protein 4105 196-225,291-365 f a.1 1 1.1 1.1.13 beta barrels cradle loop barrel RIFT-related Phage tail proteins 000119162 e3d37A2 002995247 Q87HF5_nD1 Q87HF5 Q87HF5_VIBPA VPA1010 4089 1-189 f a.11 221 221.4 221.4.1 a+b two layers beta-Grasp Nudix Nudix 001726007 e5c8lA1 002995248 Q87FV2_nD1 Q87FV2 Q87FV2_VIBPA VPA1576 4655 1-285 f a.7 5059 5059.1 5059.1.1 alpha bundles Drug/Metabolite transporter Drug/Metabolite transporter Drug/Metabolite transporter 002394246 e5y78A1 002995249 Q87GF5_nD1 Q87GF5 Q87GF5_VIBPA VPA1361 Type III secretion system protein 4440 51-85 f a.6 1014 1014.1 1014.1.1 alpha arrays AopB AopB AopB 001697351 e3wxxF1 002995250 Q87GF5_nD2 Q87GF5 Q87GF5_VIBPA VPA1361 Type III secretion system protein 4440 91-120 f a.21 5006 5006.1 5006.1.1 extended segments Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa Mitochondrial cytochrome c oxidase subunit VIIa 002619689 e6t0bt1 002995251 Q87GF5_nD3 Q87GF5 Q87GF5_VIBPA VPA1361 Type III secretion system protein 4440 136-175,201-230 f a.7 3065 3065.1 3065.1.1 alpha bundles Fatty acid- and retinoid-binding proteins Fatty acid- and retinoid-binding proteins Fatty acid- and retinoid-binding proteins 001299675 e2marA1 002995252 Q87MR8_nD1 Q87MR8 Q87MR8_VIBPA VP2164 Transcriptional regulator 2163 26-50 f a.11 304 304.110 304.110.1 a+b two layers Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like 001253281 e3gfzB4 002995253 Q87PP6_nD1 Q87PP6 Q87PP6_VIBPA VP1455 OMP_b-brl domain-containing protein 1455 21-170 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 000141724 e2x27X1 002995254 Q87TJ5_nD2 Q87TJ5 Q87TJ5_VIBPA VP0074 Coiled-coil domain-containing protein 86 74 131-165 f a.1 239 239.1 239.1.1 beta barrels Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like 002723601 e7aseP1 002995255 Q87TJ5_nD1 Q87TJ5 Q87TJ5_VIBPA VP0074 Coiled-coil domain-containing protein 86 74 12-50 f a.19 386 386.1 386.1.1 few secondary structure elements beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 000139147 e3mjhB1 002995256 P66478_nD1 P66478 RS18_VIBPA VP2738 rpsR 30S ribosomal protein S18 2737 11-70 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 002093022 e5o5jR1 002995257 Q87K31_nD1 Q87K31 Q87K31_VIBPA VPA0067 LPS export ABC transporter periplasmic protein LptC 3146 31-134 f a.4 5 5.1 5.1.3 beta duplicates or obligate multimers beta-propeller-like beta-propeller 6-bladed 002322283 e5jrkB3 002995258 Q87H06_nD1 Q87H06 GUAC_VIBPA VPA1159 guaC GMP reductase 4238 6-270,291-348 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000291929 e2c6qB1 002995259 Q87J19_nD1 Q87J19 Q87J19_VIBPA VPA0434 3513 1-290 f a.17 7565 7565.1 7565.1.1 a/b three-layered sandwiches Resolvase-like Resolvase-like Resolvase-like 000134345 e3guvA1 002995260 Q87J19_nD2 Q87J19 Q87J19_VIBPA VPA0434 3513 301-525 f a.19 375 375.1 375.1.9 few secondary structure elements Rubredoxin-like Rubredoxin-related Zinc-nucleated domain of serine integrase 001144772 e4kisA2 002995261 Q87NC9_nD1 Q87NC9 Q87NC9_VIBPA VP1939 Glycine cleavage system transcriptional repressor 1939 1-75 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 000005249 e1u8sA1 002995262 Q87NC9_nD2 Q87NC9 Q87NC9_VIBPA VP1939 Glycine cleavage system transcriptional repressor 1939 76-170 f a.11 304 304.8 304.8.1 a+b two layers Alpha-beta plaits ACT-like ACT-like 001103248 e2nyiA2 002995263 Q87TF7_nD1 Q87TF7 Q87TF7_VIBPA VP0112 112 16-50 f a.19 375 375.1 375.1.1 few secondary structure elements Rubredoxin-like Rubredoxin-related Rubredoxin-related 001886390 e5t6bB1 002995264 Q87TF7_nD2 Q87TF7 Q87TF7_VIBPA VP0112 112 51-224 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 002440810 e5yf0B1 002995265 Q87SC9_nD2 Q87SC9 KHSE_VIBPA VP0495 thrB Homoserine kinase 495 176-310 f a.11 304 304.1 304.1.1 a+b two layers Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain 001406886 e4rpfB1 002995266 Q87SC9_nD1 Q87SC9 KHSE_VIBPA VP0495 thrB Homoserine kinase 495 1-175 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 001406889 e4rpfC2 002995267 Q87L63_nD1 Q87L63 Q87L63_VIBPA VP2749 2748 11-50,71-180 f a.11 310 310.3 310.3.1 a+b two layers RRF/tRNA synthetase additional domain-like General secretion pathway protein M (EpsM) periplasmic domain-related General secretion pathway protein M (EpsM) periplasmic domain-related 001792626 e3jc9Oa1 002995268 Q87FF4_nD1 Q87FF4 Q87FF4_VIBPA VPA1725 1-pyrroline-5-carboxylate dehydrogenase 4804 6-230 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 002716203 e6x9aA2 002995269 Q87TF3_nD1 Q87TF3 ADD_VIBPA VP0116 add Adenosine deaminase 116 1-330 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 002429380 e6n91A1 002995270 Q87HD4_nD1 Q87HD4 Q87HD4_VIBPA VPA1031 GPW_gp25 domain-containing protein 4110 6-150 f a.15 283 283.2 283.2.1 a+b duplicates or obligate multimers Creatinase/aminopeptidase-like gpW/gp25-like gpW/gp25-like 002409489 e6gj1D1 002995271 Q87PQ1_nD1 Q87PQ1 Q87PQ1_VIBPA VP1450 1450 6-195 f a.7 629 629.1 629.1.1 alpha bundles TorD-like (Pfam 06192) TorD-like (Pfam 06192) TorD-like (Pfam 06192) 000360395 e3efpB1 002995272 P40611_nD1 P40611 RNR_VIBPA VP2807 rnr Ribonuclease R 2806 11-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000147301 e2lnbA1 002995273 P40611_nD5 P40611 RNR_VIBPA VP2807 rnr Ribonuclease R 2806 651-765 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002129749 e5xguA3 002995274 P40611_nD2 P40611 RNR_VIBPA VP2807 rnr Ribonuclease R 2806 86-155 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002722260 e7dicA3 002995275 P40611_nD4 P40611 RNR_VIBPA VP2807 rnr Ribonuclease R 2806 231-650 f a.1 2 2.9 2.9.1 beta barrels OB-fold RNB domain-like RNB domain-like 002129750 e5xguA4 002995276 P40611_nD3 P40611 RNR_VIBPA VP2807 rnr Ribonuclease R 2806 156-230 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 002129748 e5xguA2 002995277 Q87NE9_nD2 Q87NE9 Q87NE9_VIBPA VP1919 Cytochrome c domain-containing protein 1919 176-190,336-475 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 001088841 e4b2nA2 002995278 Q87NE9_nD1 Q87NE9 Q87NE9_VIBPA VP1919 Cytochrome c domain-containing protein 1919 41-230,251-335 f a.6 107 107.1 107.1.1 alpha arrays Cytochrome c-like Cytochrome c Cytochrome c 000373277 e3hq9B1 002995279 Q87N77_nD1 Q87N77 Q87N77_VIBPA VP1998 1998 31-420 f a.15 5085 5085.1 5085.1.1 a+b duplicates or obligate multimers Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 000411263 e2xmnC1 002995280 Q87ME6_nD1 Q87ME6 Q87ME6_VIBPA VP2309 Chaperone protein skp 2309 26-165 f a.15 5094 5094.1 5094.1.1 a+b duplicates or obligate multimers OmpH-like OmpH-like OmpH-like 001030831 e4kqtA1 002995281 Q87PT7_nD1 Q87PT7 Q87PT7_VIBPA VP1414 DotU domain-containing protein 1414 51-225 f a.7 3706 3706.1 3706.1.1 alpha bundles Conserved type six secretion component TssL-related Conserved type six secretion component TssL-related Conserved type six secretion component TssL-related 002641025 e6y4rB1 002995282 Q87PT7_nD2 Q87PT7 Q87PT7_VIBPA VP1414 DotU domain-containing protein 1414 231-260 f a.7 3928 3928.1 3928.1.1 alpha bundles Cell division protein CrgA Cell division protein CrgA Cell division protein CrgA 001487328 e2mmuA1 002995283 Q87M25_nD1 Q87M25 DEOD1_VIBPA VP2433 deoD1 Purine nucleoside phosphorylase DeoD-type 1 2433 1-235 f a.17 2011 2011.2 2011.2.1 a/b three-layered sandwiches Phosphorylase/hydrolase-like Peptidyl-tRNA hydrolase-like Peptidyl-tRNA hydrolase-like 000424039 e3opvL1 002995284 Q87TR1_nD1 Q87TR1 Q87TR1_VIBPA VP0007 7 1-215 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 002772273 e7mbzA1 002995285 Q87SV7_nD1 Q87SV7 Q87SV7_VIBPA VP0315 ubiX Flavin prenyltransferase UbiX 315 11-210 f a.17 7564 7564.1 7564.1.1 a/b three-layered sandwiches Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 001498326 e4rheB1 002995286 Q87HE7_nD1 Q87HE7 Q87HE7_VIBPA VPA1018 Outer membrane lipoprotein Blc 4097 21-173 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000161306 e2acoA1 002995287 Q87L67_nD1 Q87L67 AROK_VIBPA VP2745 aroK Shikimate kinase 2744 6-170 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001678297 e4y0aA1 002995288 Q87KG4_nD1 Q87KG4 Q87KG4_VIBPA VP3013 DNA helicase 3012 6-645 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001233610 e4cejB6 002995289 Q87KG4_nD2 Q87KG4 Q87KG4_VIBPA VP3013 DNA helicase 3012 666-724 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 001887572 e5dmaA1 002995290 Q87MJ0_nD1 Q87MJ0 Q87MJ0_VIBPA VP2265 2265 26-110 f a.11 872 872.3 872.3.1 a+b two layers Dodecin subunit-like YbjQ-like YbjQ-like 000416478 e2l8yA1 002995291 Q87SS7_nD2 Q87SS7 LEU1_VIBPA VP0346 leuA 2-isopropylmalate synthase 345 391-510 f a.11 330 330.6 330.6.1 a+b two layers dsRBD-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 000361464 e3f6hB1 002995292 Q87SS7_nD1 Q87SS7 LEU1_VIBPA VP0346 leuA 2-isopropylmalate synthase 345 1-380 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 000374859 e2ztjA1 002995293 Q87QL8_nD1 Q87QL8 Q87QL8_VIBPA VP1131 UPF0147 protein 1131 11-80 f a.6 101 101.1 101.1.4 alpha arrays HTH HTH tetra-helical, lambda repressor-like 002723200 e7bqqA1 002995294 Q87GF0_nD1 Q87GF0 Q87GF0_VIBPA VPA1366 DNA-binding protein 4445 1-150 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002581 e1lj9A1 002995295 Q87LG1_nD1 Q87LG1 Q87LG1_VIBPA VP2651 DUF3265 domain-containing protein 2650 1-25 f a.1 5084 5084.5 5084.5.1 beta barrels Outer membrane meander beta-barrels Porins Porin 001562388 e4ql0A3 002995296 Q87N73_nD1 Q87N73 Q87N73_VIBPA VP2002 Methyltransf_25 domain-containing protein 2002 6-230 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000141658 e3pfgA1 002995297 Q87H60_nD3 Q87H60 Q87H60_VIBPA VPA1105 4184 396-455 f a.1 2 2.1 2.1.1 beta barrels OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins 000168820 e2k14A1 002995298 Q87H60_nD2 Q87H60 Q87H60_VIBPA VPA1105 4184 261-390 f a.6 129 129.1 129.1.1 alpha arrays 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 002414893 e6hcyB1 002995299 Q87H60_nD1 Q87H60 Q87H60_VIBPA VPA1105 4184 21-260 f a.17 2486 2486.1 2486.1.1 a/b three-layered sandwiches ClpP/crotonase ClpP/crotonase ClpP/crotonase 001113196 e3wg5B1 002995300 Q87MR5_nD1 Q87MR5 Q87MR5_VIBPA VP2166 2166 1-60 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001214560 e2rk0B3 002995301 Q87MR5_nD2 Q87MR5 Q87MR5_VIBPA VP2166 2166 61-125 f a.11 211 211.1 211.1.1 a+b two layers Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 001160881 e3isqA2 002995302 Q87GS3_nD1 Q87GS3 Q87GS3_VIBPA VPA1242 4321 6-410 f a.10 5051 5051.1 5051.1.1 alpha complex topology Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like Sodium:neurotransmitter symporter family (SNF)-like 000390543 e2x79A1 002995303 Q87RV6_nD1 Q87RV6 Q87RV6_VIBPA VP0670 DUF3332 domain-containing protein 670 26-80 f a.4 6 6.1 6.1.1 beta duplicates or obligate multimers beta-Trefoil beta-Trefoil beta-Trefoil 000345607 e2qn4B1 002995304 Q87RV6_nD2 Q87RV6 Q87RV6_VIBPA VP0670 DUF3332 domain-containing protein 670 116-170 f a.1 9 9.1 9.1.1 beta barrels Lipocalins/Streptavidin Lipocalins Lipocalins 000000820 e1mdcA1 002995305 Q87G70_nD2 Q87G70 Q87G70_VIBPA VPA1447 4526 151-220 f a.6 101 101.1 101.1.3 alpha arrays HTH HTH tetra-helical, LuxR-like 000138024 e3klnA1 002995306 Q87G70_nD1 Q87G70 Q87G70_VIBPA VPA1447 4526 1-150 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 002050385 e3klnA2 002995307 Q87RR9_nD1 Q87RR9 Q87RR9_VIBPA VP0708 D,D-heptose 1,7-bisphosphate phosphatase 708 1-180 f a.17 2006 2006.1 2006.1.1 a/b three-layered sandwiches HAD domain-like HAD domain-related HAD-like 000383096 e3l8eA1 002995308 Q87L11_nD2 Q87L11 RLMB_VIBPA VP2806 rlmB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 2805 81-245 f a.17 2488 2488.1 2488.1.1 a/b three-layered sandwiches alpha/beta knot alpha/beta knot alpha/beta knot 000113957 e1gz0F2 002995309 Q87L11_nD1 Q87L11 RLMB_VIBPA VP2806 rlmB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 2805 6-80 f a.12 301 301.1 301.1.1 a+b three layers Bacillus chorismate mutase-like L30e-like L30e-like 000079113 e1gz0F1 002995310 Q87M52_nD3 Q87M52 Q87M52_VIBPA VP2406 2406 176-270 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001518799 e2esnA3 002995311 Q87M52_nD2 Q87M52 Q87M52_VIBPA VP2406 2406 86-175,271-305 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002995312 Q87M52_nD1 Q87M52 Q87M52_VIBPA VP2406 2406 1-85 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 000002611 e2esnA1 002995313 Q87T75_nD1 Q87T75 Q87T75_VIBPA VP0195 Diacylglycerol kinase 195 21-130 f a.7 601 601.1 601.1.1 alpha bundles Four-helical up-and-down bundle alpha-catenin-related alpha-catenin/vinculin 002105845 e5xa5A1 002995314 Q87H89_nD2 Q87H89 Q87H89_VIBPA VPA1076 4155 126-220 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002780796 e7lzaA2 002995315 Q87H89_nD1 Q87H89 Q87H89_VIBPA VPA1076 4155 1-125 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001712078 e4s04F2 002995316 Q87JI1_nD1 Q87JI1 Q87JI1_VIBPA VPA0272 3351 16-105 f a.7 5058 5058.1 5058.1.1 alpha bundles Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), transmembrane region 002832654 e7dluA2 002995317 Q87LE7_nD1 Q87LE7 Q87LE7_VIBPA VP2665 2664 1-320 f a.7 3745 3745.1 3745.1.1 alpha bundles Sodium/Calcium exchanger Sodium/Calcium exchanger Sodium/Calcium exchanger 001120729 e4k1cA1 002995318 Q87QT3_nD1 Q87QT3 Q87QT3_VIBPA VP1066 DUF1190 domain-containing protein 1066 41-170 f a.7 601 601.37 601.37.1 alpha bundles Four-helical up-and-down bundle Photosystem II lipoprotein Psb27 Photosystem II lipoprotein Psb27 002733865 e7nhp11 002995319 Q87NC1_nD1 Q87NC1 Q87NC1_VIBPA VP1947 Nucleotidyltransferase 1947 11-130 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 002151371 e5lpaB1 002995320 Q87NC1_nD2 Q87NC1 Q87NC1_VIBPA VP1947 Nucleotidyltransferase 1947 131-250 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 001851634 e3c18C1 002995321 Q87FJ3_nD1 Q87FJ3 Q87FJ3_VIBPA VPA1686 SCP domain-containing protein 4765 67-208 f a.12 273 273.1 273.1.1 a+b three layers PR-1-like PR-1-like PR-1-like 001031145 e4ifaA3 002995322 P40610_nD1 P40610 NSRR_VIBPA VP2808 nsrR HTH-type transcriptional repressor NsrR 2807 1-135 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002512618 e6hsdA1 002995323 P22095_nD1 P22095 TRPA_VIBPA VP1961 trpA Tryptophan synthase alpha chain 1961 1-268 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001125590 e4ht3A1 002995324 Q87LS1_nD2 Q87LS1 Q87LS1_VIBPA VP2540 2540 736-940 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 001182872 e3cwwB13 002995325 Q87LS1_nD1 Q87LS1 Q87LS1_VIBPA VP2540 2540 26-735 f a.11 309 309.1 309.1.1 a+b two layers LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase 001116572 e3s5iA3 002995326 Q87LE8_nD1 Q87LE8 Q87LE8_VIBPA VP2664 2663 6-265 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002754654 e7chaI1 002995327 Q87MC2_nD1 Q87MC2 Q87MC2_VIBPA VP2334 Tellurite resistance TerB family protein 2334 111-220 f a.6 4198 4198.1 4198.1.1 alpha arrays TerB-like TerB-like TerB-like 000047727 e2ou3B1 002995328 Q87NA8_nD2 Q87NA8 OPAM_VIBPA VP1967 opaM Acyl-homoserine-lactone synthase OpaM 1967 116-375 f a.12 213 213.1 213.1.1 a+b three layers Nat/Ivy Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 000147481 e3qb8A1 002995329 Q87NA8_nD1 Q87NA8 OPAM_VIBPA VP1967 opaM Acyl-homoserine-lactone synthase OpaM 1967 1-115 f a.7 189 189.1 189.1.1 alpha bundles GTPase activation domain, GAP GTPase activation domain, GAP GTPase activation domain, GAP 001871643 e5ircA1 002995330 Q87J40_nD1 Q87J40 Q87J40_VIBPA VPA0413 nicotinate-nucleotide adenylyltransferase 3492 1-175 f a.17 2005 2005.1 2005.1.1 a/b three-layered sandwiches HUP domain-like HUP domains HUP domains 000361566 e3h05B1 002995331 Q87K43_nD4 Q87K43 Q87K43_VIBPA VPA0055 3134 601-690 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000165770 e2yrlA1 002995332 Q87K43_nD3 Q87K43 Q87K43_VIBPA VPA0055 3134 466-495 f a.11 284 284.2 284.2.1 a+b two layers FKBP-like Chitinase insertion domain Chitinase insertion domain 002649747 e6kstA1 002995333 Q87K43_nD5 Q87K43 Q87K43_VIBPA VPA0055 3134 701-785 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 002387783 e5ngjA3 002995334 Q87K43_nD2 Q87K43 Q87K43_VIBPA VPA0055 3134 136-465,496-600 f a.16 2002 2002.1 2002.1.1 a/b barrels TIM beta/alpha-barrel TIM barrels TIM barrels 001098086 e3b9eA3 002995335 Q87K43_nD6 Q87K43 Q87K43_VIBPA VPA0055 3134 796-845 f a.2 64 64.3 64.3.1 beta meanders WW domain-like Carbohydrate binding domain Carbohydrate binding domain 002389402 e5zl9A4 002995336 Q87K43_nD1 Q87K43 Q87K43_VIBPA VPA0055 3134 21-135 f a.3 11 11.1 11.1.1 beta sandwiches Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like 000955078 e3b9eA1 002995337 Q87HP3_nD1 Q87HP3 Q87HP3_VIBPA VPA0920 3999 66-150 f a.9 109 109.43 109.43.1 alpha superhelices Repetitive alpha hairpins Helical insertion in sensor domain of histidine kinase VC_A0565 Helical insertion in sensor domain of histidine kinase VC_A0565 001411828 e4r7qA2 002995338 Q87HP3_nD5 Q87HP3 Q87HP3_VIBPA VPA0920 3999 346-480 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 001223387 e3crlB3 002995339 Q87HP3_nD2 Q87HP3 Q87HP3_VIBPA VPA0920 3999 21-65,151-240 f a.12 6156 6156.1 6156.1.1 a+b three layers Sensor domain of histidine kinase VC_A0565 Sensor domain of histidine kinase VC_A0565 Sensor domain of histidine kinase VC_A0565 002665607 e7cusA2 002995340 Q87HP3_nD4 Q87HP3 Q87HP3_VIBPA VPA0920 3999 286-340 f a.8 605 605.1 605.1.1 alpha duplicates or obligate multimers ROP-like Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 000004346 e2c2aA1 002995341 Q87HP3_nD3 Q87HP3 Q87HP3_VIBPA VPA0920 3999 246-270 f a.7 633 633.15 633.15.1 alpha bundles Bromodomain-like alpha-ketoacid dehydrogenase kinase-N alpha-ketoacid dehydrogenase kinase-N 000003667 e1gkzA1 002995342 Q87SA6_nD1 Q87SA6 MUTH_VIBPA VP0518 mutH DNA mismatch repair protein MutH 518 1-220 f a.17 2008 2008.1 2008.1.1 a/b three-layered sandwiches Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like 000288783 e2aorB1 002995343 Q87SW4_nD1 Q87SW4 Q87SW4_VIBPA VP0308 Translocation/assembly module TamB 308 21-115 f a.2 7026 7026.1 7026.1.1 beta meanders N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 N-terminal region of lipid transporter Vps13 002485672 e6cbcB1 002995344 Q87SW4_nD6 Q87SW4 Q87SW4_VIBPA VP0308 Translocation/assembly module TamB 308 1181-1250 f a.1 5084 5084.1 5084.1.1 beta barrels Outer membrane meander beta-barrels OMPA-like OMPA-like 002715752 e6x1kA1 002995345 Q87SW4_nD5 Q87SW4 Q87SW4_VIBPA VP0308 Translocation/assembly module TamB 308 1026-1130 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 002534564 e6i96A1 002995346 Q87SW4_nD2 Q87SW4 Q87SW4_VIBPA VP0308 Translocation/assembly module TamB 308 141-190,216-300 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001716664 e2gufA2 002995347 Q87SW4_nD4 Q87SW4 Q87SW4_VIBPA VP0308 Translocation/assembly module TamB 308 461-475,496-985,1016-1025 f a.1 5084 5084.5 5084.5.3 beta barrels Outer membrane meander beta-barrels Porins Ligand-gated protein channel 001716629 e1fepA2 002995348 Q87SW4_nD3 Q87SW4 Q87SW4_VIBPA VP0308 Translocation/assembly module TamB 308 301-440,476-495 f a.2 77 77.1 77.1.1 beta meanders open-sided beta-meander Outer surface protein Outer surface protein 002642884 e6kk9B1 002995349 Q87HB6_nD2 Q87HB6 Q87HB6_VIBPA VPA1049 4128 156-395 f a.13 210 210.2 210.2.1 a+b four layers Ntn/PP2C Protein serine/threonine phosphatase 2C, catalytic domain Protein serine/threonine phosphatase 2C, catalytic domain 000404793 e3ke6B1 002995350 Q87HB6_nD1 Q87HB6 Q87HB6_VIBPA VPA1049 4128 1-135 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 001178794 e3eq2A3 002995351 Q87L05_nD4 Q87L05 MUTL_VIBPA VP2819 mutL DNA mismatch repair protein MutL 2818 486-520,621-669 f a.11 4337 4337.1 4337.1.1 a+b two layers DNA mismatch repair protein MutL dimerization subdomain DNA mismatch repair protein MutL dimerization subdomain DNA mismatch repair protein MutL dimerization subdomain 001875107 e1x9zB1 002995352 Q87L05_nD3 Q87L05 MUTL_VIBPA VP2819 mutL DNA mismatch repair protein MutL 2818 526-620 f a.11 327 327.19 327.19.1 a+b two layers Alpha-lytic protease prodomain-like DNA mismatch repair protein MutL regulatory subdomain DNA mismatch repair protein MutL regulatory subdomain 001874159 e3ncvB2 002995353 Q87L05_nD1 Q87L05 MUTL_VIBPA VP2819 mutL DNA mismatch repair protein MutL 2818 6-200 f a.11 225 225.1 225.1.1 a+b two layers ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 000006555 e1b63A2 002995354 Q87L05_nD2 Q87L05 MUTL_VIBPA VP2819 mutL DNA mismatch repair protein MutL 2818 221-330 f a.11 212 212.1 212.1.1 a+b two layers Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 000006007 e1b63A1 002995355 Q87LR0_nD1 Q87LR0 Q87LR0_VIBPA VP2551 2551 1-160 f a.17 7520 7520.1 7520.1.1 a/b three-layered sandwiches CinA-like CinA-like CinA-like 000010332 e2a9sA1 002995356 Q87S47_nD1 Q87S47 Q87S47_VIBPA VP0577 Phosphate-specific transport system accessory protein PhoU 577 6-225 f a.7 604 604.5 604.5.1 alpha bundles Spectrin repeat-like PhoU-like (Pfam 01895) PhoU-like (Pfam 01895) 000314469 e2oltC1 002995357 Q87R95_nD3 Q87R95 Q87R95_VIBPA VP0902 902 351-435 f a.14 217 217.2 217.2.1 a+b complex topology FAD-binding domain-like CorC/HlyC domain-like CorC/HlyC domain-like 001016923 e4hg0A2 002995358 Q87R95_nD1 Q87R95 Q87R95_VIBPA VP0902 902 1-175 f a.7 7064 7064.1 7064.1.1 alpha bundles Transmembrane domain of VIT1 Transmembrane domain of VIT1 Transmembrane domain of VIT1 002502907 e6iu4A1 002995359 Q87R95_nD2 Q87R95 Q87R95_VIBPA VP0902 902 186-345 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000140947 e3ocmA1 002995360 Q87T81_nD1 Q87T81 FPG_VIBPA VP0189 mutM Formamidopyrimidine-DNA glycosylase 189 6-130 f a.1 3504 3504.2 3504.2.1 beta barrels MutM N-terminal domain-like N-terminal domain of MutM-like DNA repair proteins N-terminal domain of MutM-like DNA repair proteins 002670935 e6tc9A1 002995361 Q87T81_nD2 Q87T81 FPG_VIBPA VP0189 mutM Formamidopyrimidine-DNA glycosylase 189 131-220 f a.6 102 102.2 102.2.1 alpha arrays HhH/H2TH H2TH H2TH 000376368 e3jr5A1 002995362 Q87T81_nD3 Q87T81 FPG_VIBPA VP0189 mutM Formamidopyrimidine-DNA glycosylase 189 221-269 f a.19 377 377.2 377.2.1 few secondary structure elements Glucocorticoid receptor-like C-terminal, Zn-finger domain of MutM-like DNA repair proteins C-terminal, Zn-finger domain of MutM-like DNA repair proteins 000376369 e3jr5A2 002995363 Q87MK5_nD2 Q87MK5 CHEB1_VIBPA VP2228 cheB Protein-glutamate methylesterase/protein-glutamine glutaminase 2228 171-369 f a.17 7548 7548.1 7548.1.1 a/b three-layered sandwiches Methylesterase CheB, C-terminal domain Methylesterase CheB, C-terminal domain Methylesterase CheB, C-terminal domain 000143951 e3sftA1 002995364 Q87MK5_nD1 Q87MK5 CHEB1_VIBPA VP2228 cheB Protein-glutamate methylesterase/protein-glutamine glutaminase 2228 1-140 f a.17 2007 2007.1 2007.1.3 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like CheY-like 000010030 e1a2oA1 002995365 Q87Q21_nD1 Q87Q21 Q87Q21_VIBPA VP1329 1329 6-505 f a.17 7524 7524.1 7524.1.1 a/b three-layered sandwiches ALDH-like ALDH-like ALDH-like 001900990 e1eyyA2 002995366 Q87SU2_nD1 Q87SU2 OBG_VIBPA VP0330 obg GTPase Obg 330 11-150 f a.5 710 710.1 710.1.1 beta complex topology Obg GTP-binding protein N-terminal domain Obg GTP-binding protein N-terminal domain Obg GTP-binding protein N-terminal domain 002757041 e7o9kG2 002995367 Q87SU2_nD2 Q87SU2 OBG_VIBPA VP0330 obg GTPase Obg 330 156-364 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002034026 e5m04A1 002995368 Q87SK5_nD1 Q87SK5 Q87SK5_VIBPA VP0418 Phosphate transporter 418 6-415 f a.10 3226 3226.1 3226.1.1 alpha complex topology Uracil Transporter UraA Uracil Transporter UraA Uracil Transporter UraA 001886253 e5l25A1 002995369 Q87KG1_nD2 Q87KG1 Q87KG1_VIBPA VP3016 DUF2063 domain-containing protein 3015 136-250 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001291237 e4cckA2 002995370 Q87KG1_nD1 Q87KG1 Q87KG1_VIBPA VP3016 DUF2063 domain-containing protein 3015 6-125 f a.6 3552 3552.1 3552.1.1 alpha arrays Pfam family PF09836 N-terminal domain Pfam family PF09836 N-terminal domain Pfam family PF09836 N-terminal domain 000185159 e3deeA1 002995371 Q87L42_nD1 Q87L42 Q87L42_VIBPA VP2774 Sulfurtransferase complex subunit TusB 2773 1-90 f a.17 7545 7545.1 7545.1.1 a/b three-layered sandwiches YchN-like YchN-like YchN-like 000109625 e2d1pI1 002995372 Q87KP1_nD1 Q87KP1 MURI_VIBPA VP2936 murI Glutamate racemase 2935 6-100 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 002420009 e5w16D1 002995373 Q87KP1_nD2 Q87KP1 MURI_VIBPA VP2936 murI Glutamate racemase 2935 101-260 f a.17 2007 2007.1 2007.1.5 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like ATC-like 000164867 e2jfnA2 002995374 Q87G47_nD3 Q87G47 Q87G47_VIBPA VPA1470 LysM domain-containing protein 4549 281-305 f a.11 3743 3743.1 3743.1.1 a+b two layers L,D-transpeptidase C-terminal domain L,D-transpeptidase C-terminal domain L,D-transpeptidase C-terminal domain 001097266 e4lzhA3 002995375 Q87G47_nD1 Q87G47 Q87G47_VIBPA VPA1470 LysM domain-containing protein 4549 31-95 f a.6 101 101.15 101.15.1 alpha arrays HTH LysM domain LysM domain 001097264 e4lzhA1 002995376 Q87G47_nD2 Q87G47 Q87G47_VIBPA VPA1470 LysM domain-containing protein 4549 96-280 f a.5 4091 4091.1 4091.1.1 beta complex topology L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like L,D-transpeptidase catalytic domain-like 002705902 e7kgmA1 002995377 Q87KM0_nD1 Q87KM0 Q87KM0_VIBPA VP2957 Ribosomal RNA small subunit methyltransferase D 2956 6-195 f a.17 2003 2003.1 2003.1.5 a/b three-layered sandwiches Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases 000099784 e2fpoD1 002995378 Q87I41_nD1 Q87I41 Q87I41_VIBPA VPA0766 tRNA_edit domain-containing protein 3844 71-220 f a.14 299 299.1 299.1.1 a+b complex topology YbaK/ProRS associated domain YbaK/ProRS associated domain YbaK/ProRS associated domain 000084903 e1vkiB1 002995379 Q87TI7_nD1 Q87TI7 Y082_VIBPA VP0082 UPF0391 membrane protein VP0082 82 26-50 f a.21 5002 5002.1 5002.1.1 extended segments Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region 000157075 e1vrnH2 002995380 Q87T22_nD1 Q87T22 Q87T22_VIBPA VP0248 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase 248 1-305 f a.7 141 141.1 141.1.1 alpha bundles Terpenoid synthases Terpenoid synthases Terpenoid synthases 001314501 e4tq4D1 002995381 Q87PR4_nD1 Q87PR4 Q87PR4_VIBPA VP1437 Aspartokinase 1437 6-30 f a.11 322 322.1 322.1.1 a+b two layers HPr-like HPr-like HPr-like 000063653 e1qr5A1 002995382 Q87RD7_nD1 Q87RD7 Q87RD7_VIBPA VP0860 860 6-148 f a.12 312 312.1 312.1.1 a+b three layers HIT-like HIT-related HIT-related 000135738 e3i24A1 002995383 Q87HT1_nD1 Q87HT1 Q87HT1_VIBPA VPA0875 3954 6-180 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001153570 e3va7A19 002995384 Q87HT1_nD2 Q87HT1 Q87HT1_VIBPA VPA0875 3954 181-305 f a.1 75 75.1 75.1.1 beta barrels Cyclophilin-like Cyclophilin-like Cyclophilin-like 001153572 e3va7A21 002995385 Q87T19_nD1 Q87T19 Q87T19_VIBPA VP0251 251 101-180 f a.11 304 304.14 304.14.1 a+b two layers Alpha-beta plaits Sporulation related repeat (SPOR) Sporulation related repeat (SPOR) 000157953 e1x60A1 002995386 Q87LU2_nD3 Q87LU2 Q87LU2_VIBPA VP2519 Pyruvate dehydrogenase E1 component 2519 701-885 f a.17 7522 7522.1 7522.1.1 a/b three-layered sandwiches TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like 001397350 e4qoyC1 002995387 Q87LU2_nD2 Q87LU2 Q87LU2_VIBPA VP2519 Pyruvate dehydrogenase E1 component 2519 471-700 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 001397351 e4qoyC2 002995388 Q87LU2_nD1 Q87LU2 Q87LU2_VIBPA VP2519 Pyruvate dehydrogenase E1 component 2519 6-470 f a.17 7574 7574.1 7574.1.1 a/b three-layered sandwiches Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 001397352 e4qoyC3 002995389 Q87GG8_nD1 Q87GG8 Q87GG8_VIBPA VPA1348 4427 1-105 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002067753 e5ju7A1 002995390 Q87S12_nD1 Q87S12 DER_VIBPA VP0612 der GTPase Der 612 1-175 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002809907 e7siqA1 002995391 Q87S12_nD2 Q87S12 DER_VIBPA VP0612 der GTPase Der 612 176-385 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001760315 e4dcuA3 002995392 Q87S12_nD3 Q87S12 DER_VIBPA VP0612 der GTPase Der 612 386-480 f a.11 327 327.9 327.9.1 a+b two layers Alpha-lytic protease prodomain-like Probable GTPase Der, C-terminal domain Probable GTPase Der, C-terminal domain 001697249 e5dn8A3 002995393 Q87JM4_nD2 Q87JM4 MACB_VIBPA VPA0224 macB Macrolide export ATP-binding/permease protein MacB 3303 306-360,476-520 f a.11 304 304.128 304.128.1 a+b two layers Alpha-beta plaits ferredoxin-like domain in periplasmic region of MacB ferredoxin-like domain in periplasmic region of MacB 002589208 e5nikK4 002995394 Q87JM4_nD1 Q87JM4 MACB_VIBPA VPA0224 macB Macrolide export ATP-binding/permease protein MacB 3303 1-240 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 002417768 e5gkoA1 002995395 Q87JM4_nD3 Q87JM4 MACB_VIBPA VPA0224 macB Macrolide export ATP-binding/permease protein MacB 3303 361-475 f a.1 1 1.1 1.1.2 beta barrels cradle loop barrel RIFT-related double psi 002417770 e5gkoA3 002995396 Q87JM4_nD4 Q87JM4 MACB_VIBPA VPA0224 macB Macrolide export ATP-binding/permease protein MacB 3303 256-305,521-654 f a.7 1075 1075.1 1075.1.2 alpha bundles Type II ABC exporter transmembrane domain fold Type II ABC exporter transmembrane domain-related MacB transmembrane domain 002394420 e5xu1S3 002995397 Q87ST3_nD1 Q87ST3 LPTD_VIBPA VP0339 lptD LPS-assembly protein LptD 339 31-215 f a.2 3523 3523.1 3523.1.1 beta meanders Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) Periplasmic lipopolysaccharide transport protein LptA (YhbN) 001313004 e4q35A1 002995398 Q87ST3_nD2 Q87ST3 LPTD_VIBPA VP0339 lptD LPS-assembly protein LptD 339 216-775 f a.1 5084 5084.10 5084.10.1 beta barrels Outer membrane meander beta-barrels LPS-assembly protein LptD LPS-assembly protein LptD 001879384 e5iv8A1 002995399 Q87M69_nD1 Q87M69 ZNTB_VIBPA VP2389 zntB Zinc transport protein ZntB 2389 1-245 f a.12 4121 4121.1 4121.1.1 a+b three layers CorA soluble domain-like CorA soluble domain-like CorA soluble domain-like 000338468 e3ck6E1 002995400 Q87M69_nD2 Q87M69 ZNTB_VIBPA VP2389 zntB Zinc transport protein ZntB 2389 246-305 f a.21 5042 5042.1 5042.1.1 extended segments Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region Magnesium transport protein CorA, transmembrane region 001252174 e4ev6E5 002995401 P46234_nD1 P46234 Y2110_VIBPA VP2110 Uncharacterized protein VP2110 2110 1-144 f a.9 109 109.4 109.4.1 alpha superhelices Repetitive alpha hairpins ARM repeat ARM repeat 001890278 e5fzsA1 002995402 Q87GH6_nD1 Q87GH6 Q87GH6_VIBPA VPA1340 Type III secretion protein 4419 46-75 f a.15 3567 3567.1 3567.1.1 a+b duplicates or obligate multimers MPER trimer MPER trimer MPER trimer 002068819 e4owiB1 002995403 Q87QB4_nD2 Q87QB4 Q87QB4_VIBPA VP1236 Transcriptional regulator HexR 1236 76-280 f a.17 2007 2007.6 2007.6.1 a/b three-layered sandwiches Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain 001114600 e3fj1D1 002995404 Q87QB4_nD1 Q87QB4 Q87QB4_VIBPA VP1236 Transcriptional regulator HexR 1236 1-75 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 001066900 e4ivnA2 002995405 Q87RB6_nD1 Q87RB6 Q87RB6_VIBPA VP0881 881 6-255 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 000150042 e4ewgA1 002995406 Q87RB6_nD2 Q87RB6 Q87RB6_VIBPA VP0881 881 256-405 f a.17 7581 7581.1 7581.1.1 a/b three-layered sandwiches Thiolase-like Thiolase-like Thiolase-like 002634731 e6smpH1 002995407 Q87IG3_nD1 Q87IG3 Q87IG3_VIBPA VPA0643 Electron transfer flavoprotein-ubiquinone oxidoreductase 3722 1-455 f a.17 2003 2003.1 2003.1.2 a/b three-layered sandwiches Rossmann-like Rossmann-related FAD/NAD(P)-binding domain 000009236 e2gmhA3 002995408 Q87IG3_nD2 Q87IG3 Q87IG3_VIBPA VPA0643 Electron transfer flavoprotein-ubiquinone oxidoreductase 3722 456-550 f a.11 205 205.1 205.1.1 a+b two layers 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin 000005491 e2gmhA1 002995409 Q87SH3_nD2 Q87SH3 Q87SH3_VIBPA VP0450 rsmI Ribosomal RNA small subunit methyltransferase I 450 121-235 f a.11 1137 1137.1 1137.1.1 a+b two layers Tetrapyrrole methylase C-terminal domain-like Tetrapyrrole methylase C-terminal domain Tetrapyrrole methylase C-terminal domain 001937720 e5hw4A1 002995410 Q87SH3_nD1 Q87SH3 Q87SH3_VIBPA VP0450 rsmI Ribosomal RNA small subunit methyltransferase I 450 11-120 f a.17 7550 7550.1 7550.1.1 a/b three-layered sandwiches Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain Tetrapyrrole methylase N-terminal domain 001937721 e5hw4A2 002995411 Q87SH3_nD3 Q87SH3 Q87SH3_VIBPA VP0450 rsmI Ribosomal RNA small subunit methyltransferase I 450 241-285 f a.6 101 101.1 101.1.1 alpha arrays HTH HTH tri-helical 000162780 e2d5vA2 002995412 Q87NZ3_nD4 Q87NZ3 Q87NZ3_VIBPA VP1725 Cyclic nucleotide-binding protein 1725 476-620 f a.7 601 601.7 601.7.1 alpha bundles Four-helical up-and-down bundle HEPN Nucleotidyltransferase substrate binding subunit/domain 000003734 e1v4aA1 002995413 Q87NZ3_nD3 Q87NZ3 Q87NZ3_VIBPA VP1725 Cyclic nucleotide-binding protein 1725 291-475 f a.12 316 316.1 316.1.1 a+b three layers Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase 001179387 e3k7dA3 002995414 Q87NZ3_nD2 Q87NZ3 Q87NZ3_VIBPA VP1725 Cyclic nucleotide-binding protein 1725 146-290 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 001087106 e4gqyA1 002995415 Q87NZ3_nD1 Q87NZ3 Q87NZ3_VIBPA VP1725 Cyclic nucleotide-binding protein 1725 6-140 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002071023 e5jizA1 002995416 Q87FW5_nD1 Q87FW5 Q87FW5_VIBPA VPA1563 4642 1-135 f a.6 101 101.1 101.1.9 alpha arrays HTH HTH Putative DNA-binding domain 001844200 e5e01B1 002995417 Q87LX7_nD2 Q87LX7 Q87LX7_VIBPA VP2481 2481 301-325 f a.19 912 912.1 912.1.1 few secondary structure elements HIV-1 VPU cytoplasmic domain HIV-1 VPU cytoplasmic domain HIV-1 VPU cytoplasmic domain 001688261 e2n28A1 002995418 Q87LX7_nD1 Q87LX7 Q87LX7_VIBPA VP2481 2481 11-40,86-300 f a.7 1075 1075.3 1075.3.1 alpha bundles Type II ABC exporter transmembrane domain fold Type I ABC importer transmembrane domain fold Type I ABC importer transmembrane domain fold 001551360 e4ymtB1 002995419 Q87G66_nD1 Q87G66 Q87G66_VIBPA VPA1450 4530 1-215 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 001614408 e2r44A1 002995420 Q87G66_nD2 Q87G66 Q87G66_VIBPA VPA1450 4530 216-315 f a.6 148 148.1 148.1.3 alpha arrays Histone-like Histone-related AAA+ ATPase lid domain 001614409 e2r44A2 002995421 Q9ALY5_nD1 Q9ALY5 Q9ALY5_VIBPA VP2793 2792 11-135 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 002388964 e6dt4A1 002995422 Q9ALY5_nD2 Q9ALY5 Q9ALY5_VIBPA VP2793 2792 136-210 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 001567546 e4r8hB1 002995423 Q87SE7_nD1 Q87SE7 BTUF_VIBPA VP0477 btuF Vitamin B12-binding protein 477 21-140 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002392428 e5yscA2 002995424 Q87SE7_nD2 Q87SE7 BTUF_VIBPA VP0477 btuF Vitamin B12-binding protein 477 141-275 f a.17 2007 2007.1 2007.1.14 a/b three-layered sandwiches Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like 002392427 e5yscA1 002995425 Q87QT1_nD1 Q87QT1 Q87QT1_VIBPA VP1068 UPF0149 family protein 1068 11-200 f a.6 635 635.1 635.1.1 alpha arrays YgfB-like YgfB-like YgfB-like 000003454 e1izmA1 002995426 Q87IZ9_nD2 Q87IZ9 Q87IZ9_VIBPA VPA0456 3535 81-295 f a.17 7523 7523.1 7523.1.1 a/b three-layered sandwiches Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II 001549312 e4x6gE2 002995427 Q87IZ9_nD1 Q87IZ9 Q87IZ9_VIBPA VPA0456 3535 1-80 f a.6 101 101.1 101.1.2 alpha arrays HTH HTH winged 002760441 e7dwnC2 002995428 Q87RH1_nD1 Q87RH1 Q87RH1_VIBPA VP0825 rfaH Transcription antitermination protein RfaH 825 1-110 f a.11 304 304.17 304.17.1 a+b two layers Alpha-beta plaits N-utilization substance G protein NusG, N-terminal domain N-utilization substance G protein NusG, N-terminal domain 002389933 e6c6sD1 002995429 Q87RH1_nD2 Q87RH1 Q87RH1_VIBPA VP0825 rfaH Transcription antitermination protein RfaH 825 111-165 f a.1 4 4.1 4.1.1 beta barrels SH3 SH3 SH3 000000597 e1nppA1 002995430 Q87N11_nD1 Q87N11 Q87N11_VIBPA VP2065 Corrinoid adenosyltransferase 2065 6-200 f a.17 2004 2004.1 2004.1.1 a/b three-layered sandwiches P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases 000867042 e4hutA1 002995431 Q87MP6_nD1 Q87MP6 Q87MP6_VIBPA VP2185 purF Amidophosphoribosyltransferase 2185 1-250 f a.13 210 210.1 210.1.3 a+b four layers Ntn/PP2C Ntn Class II glutamine amidotransferases 000087478 e1ecgA1 002995432 Q87MP6_nD2 Q87MP6 Q87MP6_VIBPA VP2185 purF Amidophosphoribosyltransferase 2185 251-475 f a.17 7573 7573.1 7573.1.1 a/b three-layered sandwiches PRTase-like PRTase-like PRTase-like 002393417 e6czfA2 002995433 Q87P91_nD1 Q87P91 ACYP_VIBPA VP1627 acyP Acylphosphatase 1627 1-90 f a.11 304 304.110 304.110.1 a+b two layers Alpha-beta plaits Acylphosphatase-like Acylphosphatase-like 000145036 e3trgA1 002995434 Q87PS9_nD1 Q87PS9 Q87PS9_VIBPA VP1422 1422 1-200 f a.3 10 10.12 10.12.1 beta sandwiches jelly-roll Double-stranded beta-helix Double-stranded beta-helix 001311099 e4iw3A1 002995435 Q87S39_nD1 Q87S39 Q87S39_VIBPA VP0585 585 1-135 f a.15 282 282.1 282.1.1 a+b duplicates or obligate multimers CBS-domain CBS-domain CBS-domain 000081412 e2o16B1 002995436 Q87PK5_nD1 Q87PK5 MOBA_VIBPA VP1497 mobA Molybdenum cofactor guanylyltransferase 1497 1-190 f a.17 7516 7516.1 7516.1.1 a/b three-layered sandwiches Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 000010288 e1e5kA1