Raw domain results for proteome/proteome comparison of human to model organisms.

Raw domain files: (*_domains_raw)

Column1: UniProt/AFDB protein identifier
Column2: DPAM domain identifier
Column3: Domain range (against protein)
Column4: ECOD T-group identifier
Column5: ECOD hit domain uid for assignment
Column6: DPAM assigner confidence measure

HomSa combined domain file: 

Column1: UniProt/AFDB protein identifier
Column2: DPAM domain identifier
Column3: Domain range (against protein)
Column4: domain type (see Fig 1B)
	sequence_only: Domain was classified using sequence alone
	sequence_ok: Domain was classified using principally sequence and some structural data
	structure: Domain was classified using structural data
	manual: Domain was partitioned but could not be assigned automatically
Column5: ECOD T-group identifier
Column6: ECOD hit domain uid(s) for assignment
	May be column-delimited list where two or more
	domains were concatenated by 'short domain' rules


Cutoffs for assignment in HomSa raw varied slightly (see Methods in paper). HomSa_raw domains were not subject to short domain combination.

Domains in raw (D1) and combined (E1) human results may differ due to cutoffs and combination of short regions.

These domains are a snapshot of those used for the paper and may differ from future DPAM/ECOD website releases

11/28/2022
RD Schaeffer
Q Cong
J Zhang