Published October 23, 2026 | Version develop291

ECOD develop291: coordinates and ligand contacts of every domain

  • 1. University of Texas Southwestern Medical Center

Description

Per-domain coordinate files for all domains of ECOD (Evolutionary Classification of protein Domains) release develop291 (2024-04-12), the last PDB-only ECOD release. The release itself distributed coordinates only for representative subsets; this record holds the full set the legacy ECOD website served.

  • ecod.develop291.pdbnum.pdb.tar.zst: 1,070,536 domain PDB files in author (PDB) residue numbering
  • ecod.develop291.seqres.pdb.tar.zst: 1,080,346 domain PDB files numbered by SEQRES position
  • ecod.develop291.ligand_contact.txt.tar.zst: ligands within 4 Å of each domain (1,082,375 files)
  • ecod.develop291.missing_files.tsv: the 13,650 domains lacking one or more of these files

The classification, release files and database are in the companion record. See README.md for layout and coverage.

Files

README.md

Files (33.2 GB)

Name Size
md5:facfdb72e4481d59219755f3557b67a1
20.5 MB Download
md5:357953a52519154cbeae7d33472a2b3d
593.5 kB Download
md5:b9b484c5f781c01a37eb77aab5956453
16.7 GB Download
md5:ab35b587b74a1cf2212df4c5497ee90a
16.5 GB Download
md5:41c0c39ae9836de270cf9899dedfc61d
382 Bytes Download
md5:6094cfae7f203cfef5a0c39b6a195433
2.7 kB Preview Download

Additional details

Related works

Is described by
Journal article: 10.1093/nar/gkw1137 (DOI)
Is previous version of
Dataset: 10.5281/zenodo.22290520 (DOI)
Is supplement to
Dataset: 10.5281/zenodo.23588067 (DOI)