Published October 23, 2026
| Version develop291
Dataset
Open
ECOD develop291: coordinates and ligand contacts of every domain
Authors/Creators
- 1. University of Texas Southwestern Medical Center
Description
Per-domain coordinate files for all domains of ECOD (Evolutionary Classification of protein Domains) release develop291 (2024-04-12), the last PDB-only ECOD release. The release itself distributed coordinates only for representative subsets; this record holds the full set the legacy ECOD website served.
ecod.develop291.pdbnum.pdb.tar.zst: 1,070,536 domain PDB files in author (PDB) residue numberingecod.develop291.seqres.pdb.tar.zst: 1,080,346 domain PDB files numbered by SEQRES positionecod.develop291.ligand_contact.txt.tar.zst: ligands within 4 Å of each domain (1,082,375 files)ecod.develop291.missing_files.tsv: the 13,650 domains lacking one or more of these files
The classification, release files and database are in the companion record. See README.md for layout and coverage.
Files
README.md
Files
(33.2 GB)
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md5:facfdb72e4481d59219755f3557b67a1
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20.5 MB | Download |
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md5:357953a52519154cbeae7d33472a2b3d
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593.5 kB | Download |
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md5:b9b484c5f781c01a37eb77aab5956453
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16.7 GB | Download |
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md5:ab35b587b74a1cf2212df4c5497ee90a
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16.5 GB | Download |
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md5:41c0c39ae9836de270cf9899dedfc61d
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382 Bytes | Download |
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md5:6094cfae7f203cfef5a0c39b6a195433
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2.7 kB | Preview Download |
Additional details
Related works
- Is described by
- Journal article: 10.1093/nar/gkw1137 (DOI)
- Is previous version of
- Dataset: 10.5281/zenodo.22290520 (DOI)
- Is supplement to
- Dataset: 10.5281/zenodo.23588067 (DOI)